Query 028329
Match_columns 210
No_of_seqs 148 out of 1666
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.7E-41 3E-45 247.4 17.8 206 1-210 1-207 (216)
2 2bov_A RAla, RAS-related prote 100.0 2E-36 6.7E-41 222.6 18.7 178 1-180 1-179 (206)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 1.8E-35 6.3E-40 217.7 22.5 171 11-183 5-176 (206)
4 3cpj_B GTP-binding protein YPT 100.0 4.9E-35 1.7E-39 218.1 19.9 174 9-184 8-182 (223)
5 2nzj_A GTP-binding protein REM 100.0 4.7E-34 1.6E-38 204.5 19.0 167 12-179 2-170 (175)
6 4dsu_A GTPase KRAS, isoform 2B 100.0 6.3E-34 2.2E-38 206.3 19.4 169 12-182 2-170 (189)
7 3tkl_A RAS-related protein RAB 100.0 2.2E-33 7.6E-38 204.7 22.1 172 9-182 11-183 (196)
8 3kkq_A RAS-related protein M-R 100.0 2.5E-33 8.7E-38 202.3 21.6 167 10-178 14-182 (183)
9 1vg8_A RAS-related protein RAB 100.0 3.6E-34 1.2E-38 210.7 17.3 169 11-181 5-178 (207)
10 3t5g_A GTP-binding protein RHE 100.0 2.3E-33 7.8E-38 202.2 20.8 169 11-181 3-172 (181)
11 2gf9_A RAS-related protein RAB 100.0 3.8E-33 1.3E-37 202.6 22.0 171 7-179 15-186 (189)
12 2hup_A RAS-related protein RAB 100.0 1.1E-33 3.6E-38 207.6 18.9 171 8-180 23-195 (201)
13 3reg_A RHO-like small GTPase; 100.0 4.9E-33 1.7E-37 202.8 22.2 174 5-181 14-191 (194)
14 1z0f_A RAB14, member RAS oncog 100.0 2.5E-33 8.4E-38 201.4 20.3 168 9-178 10-178 (179)
15 1x3s_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 202.9 21.8 174 10-185 11-185 (195)
16 3q72_A GTP-binding protein RAD 100.0 8.8E-34 3E-38 201.5 17.5 164 14-179 2-165 (166)
17 2ew1_A RAS-related protein RAB 100.0 3.6E-33 1.2E-37 204.8 20.7 169 9-179 21-190 (201)
18 2g6b_A RAS-related protein RAB 100.0 8.3E-33 2.8E-37 199.0 22.0 170 9-180 5-176 (180)
19 2gf0_A GTP-binding protein DI- 100.0 1.2E-33 4.1E-38 206.6 17.7 167 12-181 6-174 (199)
20 2j0v_A RAC-like GTP-binding pr 100.0 1.2E-33 4E-38 208.9 17.8 168 12-182 7-184 (212)
21 2a5j_A RAS-related protein RAB 100.0 5.1E-33 1.7E-37 202.3 20.8 170 8-179 15-185 (191)
22 2efe_B Small GTP-binding prote 100.0 7.2E-33 2.5E-37 199.5 20.6 169 9-179 7-176 (181)
23 3q85_A GTP-binding protein REM 100.0 3E-33 1E-37 199.3 18.3 165 14-179 2-168 (169)
24 3tw8_B RAS-related protein RAB 100.0 1E-32 3.6E-37 198.4 21.2 168 10-180 5-173 (181)
25 1r2q_A RAS-related protein RAB 100.0 5.8E-33 2E-37 197.7 19.3 164 12-177 4-168 (170)
26 1z08_A RAS-related protein RAB 100.0 5.5E-33 1.9E-37 198.0 19.1 166 11-178 3-169 (170)
27 1u8z_A RAS-related protein RAL 100.0 7.6E-33 2.6E-37 196.6 19.5 164 13-178 3-167 (168)
28 3ihw_A Centg3; RAS, centaurin, 100.0 6.6E-33 2.3E-37 200.7 19.4 165 9-180 15-182 (184)
29 3cbq_A GTP-binding protein REM 100.0 4.6E-33 1.6E-37 203.3 18.6 170 11-181 20-191 (195)
30 2g3y_A GTP-binding protein GEM 100.0 5E-33 1.7E-37 205.2 18.9 169 10-179 33-204 (211)
31 2fu5_C RAS-related protein RAB 100.0 3.2E-33 1.1E-37 201.8 17.4 167 11-179 5-172 (183)
32 2bme_A RAB4A, RAS-related prot 100.0 1.4E-32 4.9E-37 198.8 20.8 169 10-180 6-175 (186)
33 1zbd_A Rabphilin-3A; G protein 100.0 2E-32 6.8E-37 200.9 21.8 168 10-179 4-172 (203)
34 3oes_A GTPase rhebl1; small GT 100.0 2.4E-33 8.3E-38 205.6 16.8 171 10-182 20-191 (201)
35 2fg5_A RAB-22B, RAS-related pr 100.0 4.9E-33 1.7E-37 202.6 18.3 171 7-179 16-187 (192)
36 2oil_A CATX-8, RAS-related pro 100.0 1.5E-32 5.1E-37 200.1 20.8 169 9-179 20-189 (193)
37 2il1_A RAB12; G-protein, GDP, 100.0 4E-33 1.4E-37 203.1 17.6 172 6-179 18-191 (192)
38 3q3j_B RHO-related GTP-binding 100.0 6.4E-33 2.2E-37 205.4 18.7 172 9-183 22-208 (214)
39 1z06_A RAS-related protein RAB 100.0 6.9E-33 2.4E-37 201.2 18.6 168 10-178 16-188 (189)
40 1z2a_A RAS-related protein RAB 100.0 9.1E-33 3.1E-37 196.4 18.6 164 12-178 3-167 (168)
41 1c1y_A RAS-related protein RAP 100.0 1E-32 3.4E-37 196.0 18.8 163 13-177 2-166 (167)
42 2fn4_A P23, RAS-related protei 100.0 1.2E-32 3.9E-37 198.2 19.3 169 10-180 5-174 (181)
43 3bc1_A RAS-related protein RAB 100.0 2.3E-32 7.7E-37 198.8 20.9 170 9-179 6-186 (195)
44 2o52_A RAS-related protein RAB 100.0 5.4E-33 1.8E-37 203.7 17.6 168 10-179 21-189 (200)
45 1ek0_A Protein (GTP-binding pr 100.0 1.4E-32 4.7E-37 195.8 19.2 163 13-177 2-168 (170)
46 2a9k_A RAS-related protein RAL 100.0 8E-33 2.7E-37 200.0 18.0 169 9-179 13-182 (187)
47 1z0j_A RAB-22, RAS-related pro 100.0 3E-32 1E-36 194.1 20.4 164 12-177 4-168 (170)
48 2atx_A Small GTP binding prote 100.0 4E-32 1.4E-36 197.9 21.4 167 9-178 13-193 (194)
49 3dz8_A RAS-related protein RAB 100.0 8.3E-34 2.8E-38 206.5 12.2 169 10-180 19-188 (191)
50 3c5c_A RAS-like protein 12; GD 100.0 1.2E-32 4.1E-37 199.8 18.1 164 12-178 19-186 (187)
51 1kao_A RAP2A; GTP-binding prot 100.0 1.2E-32 4E-37 195.5 17.7 165 13-178 2-166 (167)
52 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.1E-32 2.8E-36 193.3 22.2 167 11-179 4-175 (177)
53 1g16_A RAS-related protein SEC 100.0 2.6E-32 9E-37 194.4 19.3 164 13-179 2-166 (170)
54 2p5s_A RAS and EF-hand domain 100.0 1E-32 3.5E-37 202.0 17.1 167 10-178 24-197 (199)
55 2hxs_A RAB-26, RAS-related pro 100.0 1.2E-32 4.2E-37 197.7 17.2 169 11-180 3-175 (178)
56 2atv_A RERG, RAS-like estrogen 100.0 2E-32 6.8E-37 200.0 17.7 166 12-180 26-193 (196)
57 2y8e_A RAB-protein 6, GH09086P 100.0 3.4E-32 1.2E-36 195.4 18.7 166 11-178 11-177 (179)
58 3con_A GTPase NRAS; structural 100.0 2.3E-31 7.9E-36 193.2 21.4 167 11-180 18-185 (190)
59 2q3h_A RAS homolog gene family 100.0 6.1E-32 2.1E-36 198.0 18.4 168 10-180 16-197 (201)
60 2j1l_A RHO-related GTP-binding 100.0 6.2E-32 2.1E-36 200.1 18.6 166 12-180 32-211 (214)
61 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.3E-31 4.6E-36 193.5 19.9 166 12-180 3-182 (186)
62 2f7s_A C25KG, RAS-related prot 100.0 2.8E-32 9.6E-37 202.1 16.6 169 11-180 22-201 (217)
63 2iwr_A Centaurin gamma 1; ANK 100.0 1.2E-31 4.2E-36 192.6 19.5 162 12-180 5-171 (178)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 7.5E-32 2.6E-36 195.0 18.2 165 11-178 4-183 (184)
65 2ce2_X GTPase HRAS; signaling 100.0 3.6E-31 1.2E-35 187.5 21.3 162 14-178 3-165 (166)
66 3cph_A RAS-related protein SEC 100.0 1.2E-31 4.2E-36 197.9 19.1 168 9-179 15-183 (213)
67 2gco_A H9, RHO-related GTP-bin 100.0 4.4E-31 1.5E-35 193.6 21.6 164 12-178 23-200 (201)
68 3clv_A RAB5 protein, putative; 100.0 2.8E-31 9.6E-36 194.5 19.9 163 12-179 5-205 (208)
69 1gwn_A RHO-related GTP-binding 100.0 1.2E-31 4.1E-36 197.3 18.0 165 11-178 25-204 (205)
70 4djt_A GTP-binding nuclear pro 100.0 1E-31 3.5E-36 199.3 17.5 177 10-188 7-185 (218)
71 1ky3_A GTP-binding protein YPT 100.0 9.3E-32 3.2E-36 193.6 16.7 168 11-179 5-179 (182)
72 2erx_A GTP-binding protein DI- 100.0 1.8E-31 6.1E-36 190.3 17.2 164 13-178 2-167 (172)
73 2cjw_A GTP-binding protein GEM 100.0 3.5E-31 1.2E-35 192.9 18.7 168 12-180 4-174 (192)
74 2fv8_A H6, RHO-related GTP-bin 100.0 7.6E-31 2.6E-35 193.2 20.6 166 12-180 23-202 (207)
75 4gzl_A RAS-related C3 botulinu 100.0 2.5E-31 8.6E-36 195.4 16.7 163 12-176 28-203 (204)
76 2yc2_C IFT27, small RAB-relate 100.0 8.4E-32 2.9E-36 198.0 13.9 168 12-180 18-194 (208)
77 1upt_A ARL1, ADP-ribosylation 100.0 3.8E-31 1.3E-35 188.7 16.0 162 12-180 5-171 (171)
78 3bwd_D RAC-like GTP-binding pr 100.0 5.6E-32 1.9E-36 194.9 11.5 164 12-178 6-181 (182)
79 3gj0_A GTP-binding nuclear pro 100.0 1.5E-31 5.1E-36 198.9 14.1 173 7-184 8-181 (221)
80 4bas_A ADP-ribosylation factor 100.0 3.7E-31 1.3E-35 193.3 14.9 172 5-180 8-191 (199)
81 3l0i_B RAS-related protein RAB 100.0 4.5E-33 1.6E-37 203.9 4.2 167 11-179 30-197 (199)
82 3t1o_A Gliding protein MGLA; G 100.0 2E-31 6.7E-36 194.4 12.6 167 9-180 9-194 (198)
83 1r8s_A ADP-ribosylation factor 100.0 1.8E-31 6.2E-36 189.2 10.9 157 15-178 1-162 (164)
84 1m2o_B GTP-binding protein SAR 100.0 3.8E-30 1.3E-34 187.1 17.3 157 12-175 21-189 (190)
85 1f6b_A SAR1; gtpases, N-termin 100.0 1.6E-30 5.6E-35 190.2 15.4 157 12-175 23-196 (198)
86 1ksh_A ARF-like protein 2; sma 100.0 1.6E-29 5.5E-34 182.8 18.3 161 12-179 16-181 (186)
87 2b6h_A ADP-ribosylation factor 100.0 6.2E-31 2.1E-35 191.6 10.2 160 12-178 27-191 (192)
88 1zd9_A ADP-ribosylation factor 100.0 2.5E-30 8.4E-35 187.7 12.7 161 12-179 20-186 (188)
89 1fzq_A ADP-ribosylation factor 100.0 7.5E-31 2.6E-35 189.4 9.8 161 12-179 14-179 (181)
90 2x77_A ADP-ribosylation factor 100.0 1.1E-30 3.8E-35 189.5 10.7 162 12-180 20-186 (189)
91 2h17_A ADP-ribosylation factor 100.0 4.8E-30 1.7E-34 185.0 13.5 160 9-175 16-180 (181)
92 1zj6_A ADP-ribosylation factor 100.0 2.3E-29 7.8E-34 182.3 16.7 163 12-181 14-181 (187)
93 2h57_A ADP-ribosylation factor 100.0 2.4E-29 8.2E-34 182.7 16.4 161 11-178 18-187 (190)
94 2f9l_A RAB11B, member RAS onco 100.0 1.6E-28 5.6E-33 179.6 19.3 166 12-179 3-169 (199)
95 2wkq_A NPH1-1, RAS-related C3 100.0 1.7E-28 5.7E-33 192.7 19.5 165 12-179 153-331 (332)
96 1moz_A ARL1, ADP-ribosylation 100.0 4.7E-30 1.6E-34 185.1 9.9 161 12-179 16-181 (183)
97 3llu_A RAS-related GTP-binding 100.0 9.5E-30 3.3E-34 185.8 11.3 167 6-176 12-195 (196)
98 1oix_A RAS-related protein RAB 100.0 5.5E-28 1.9E-32 175.8 20.0 166 9-176 24-190 (191)
99 3th5_A RAS-related C3 botulinu 99.9 1.7E-31 5.8E-36 196.2 0.0 162 12-176 28-203 (204)
100 2zej_A Dardarin, leucine-rich 100.0 6.3E-29 2.1E-33 179.7 10.4 164 14-180 2-180 (184)
101 2fh5_B SR-beta, signal recogni 100.0 7.5E-28 2.6E-32 177.9 15.3 162 12-175 5-213 (214)
102 3o47_A ADP-ribosylation factor 100.0 9.6E-29 3.3E-33 193.8 10.6 160 13-179 164-328 (329)
103 3lvq_E ARF-GAP with SH3 domain 100.0 6.5E-28 2.2E-32 199.1 12.6 163 12-181 320-487 (497)
104 3c5h_A Glucocorticoid receptor 100.0 1.7E-28 6E-33 186.1 8.1 166 9-177 14-254 (255)
105 2qu8_A Putative nucleolar GTP- 99.9 8.3E-27 2.8E-31 174.1 14.2 165 12-180 27-207 (228)
106 3iev_A GTP-binding protein ERA 99.9 1.5E-26 5E-31 179.9 15.8 173 9-186 5-190 (308)
107 2lkc_A Translation initiation 99.9 3.4E-26 1.2E-30 164.0 16.3 159 11-180 5-173 (178)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 1.1E-26 3.8E-31 180.6 14.4 164 13-181 2-184 (307)
109 1svi_A GTP-binding protein YSX 99.9 1E-26 3.6E-31 169.2 13.4 160 9-177 18-194 (195)
110 2wji_A Ferrous iron transport 99.9 1.4E-26 4.9E-31 164.5 13.3 152 14-176 3-163 (165)
111 2cxx_A Probable GTP-binding pr 99.9 3.7E-27 1.3E-31 170.7 10.1 159 15-181 2-187 (190)
112 2dyk_A GTP-binding protein; GT 99.9 5E-27 1.7E-31 165.6 9.1 149 15-176 2-160 (161)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 3.3E-28 1.1E-32 188.1 2.6 169 16-192 1-188 (331)
114 3pqc_A Probable GTP-binding pr 99.9 1.2E-25 4.2E-30 163.3 14.2 160 10-178 19-194 (195)
115 3a1s_A Iron(II) transport prot 99.9 4.5E-26 1.5E-30 172.9 10.7 157 12-178 3-167 (258)
116 2gj8_A MNME, tRNA modification 99.9 3.7E-26 1.3E-30 163.4 8.8 152 14-177 4-165 (172)
117 2wjg_A FEOB, ferrous iron tran 99.9 1.3E-25 4.3E-30 162.5 11.6 157 13-180 6-171 (188)
118 3dpu_A RAB family protein; roc 99.9 5.3E-26 1.8E-30 189.0 9.5 165 11-181 38-211 (535)
119 3b1v_A Ferrous iron uptake tra 99.9 6.8E-26 2.3E-30 172.9 9.0 154 13-177 2-163 (272)
120 4dhe_A Probable GTP-binding pr 99.9 2.4E-25 8.3E-30 165.3 11.4 166 9-180 24-213 (223)
121 1wf3_A GTP-binding protein; GT 99.9 7.4E-25 2.5E-29 169.6 12.5 167 12-184 5-179 (301)
122 3gee_A MNME, tRNA modification 99.9 2.6E-24 9E-29 175.5 13.1 156 13-177 232-397 (476)
123 3k53_A Ferrous iron transport 99.9 8.4E-25 2.9E-29 167.3 8.5 157 14-180 3-168 (271)
124 3iby_A Ferrous iron transport 99.9 9.5E-25 3.3E-29 165.4 8.5 150 15-175 2-164 (256)
125 3i8s_A Ferrous iron transport 99.9 2.2E-25 7.7E-30 170.6 4.8 156 14-179 3-170 (274)
126 2hjg_A GTP-binding protein ENG 99.9 1.9E-24 6.6E-29 175.5 8.9 162 12-181 173-352 (436)
127 1nrj_B SR-beta, signal recogni 99.9 1.2E-24 4.2E-29 161.1 5.6 148 11-164 9-170 (218)
128 4dcu_A GTP-binding protein ENG 99.9 4.5E-24 1.5E-28 174.3 9.3 163 12-182 193-373 (456)
129 1ega_A Protein (GTP-binding pr 99.9 4.9E-23 1.7E-27 159.5 12.9 165 13-184 7-181 (301)
130 2e87_A Hypothetical protein PH 99.9 1.2E-22 4.1E-27 161.0 13.9 161 12-179 165-337 (357)
131 3qq5_A Small GTP-binding prote 99.9 1.1E-24 3.9E-29 175.0 2.0 160 9-179 29-197 (423)
132 1mky_A Probable GTP-binding pr 99.9 5.1E-23 1.7E-27 167.3 10.9 153 15-179 2-167 (439)
133 1xzp_A Probable tRNA modificat 99.9 3E-23 1E-27 169.4 9.1 151 14-177 243-404 (482)
134 2hjg_A GTP-binding protein ENG 99.9 2.2E-23 7.4E-28 169.3 8.0 154 15-179 4-166 (436)
135 1lnz_A SPO0B-associated GTP-bi 99.9 9.6E-23 3.3E-27 159.9 11.3 161 15-181 159-333 (342)
136 3lxx_A GTPase IMAP family memb 99.9 3.4E-22 1.2E-26 150.1 13.2 166 10-180 25-216 (239)
137 3sjy_A Translation initiation 99.9 5.7E-22 1.9E-26 159.5 13.9 166 11-180 5-194 (403)
138 2xtp_A GTPase IMAP family memb 99.9 2.8E-22 9.5E-27 152.4 9.8 165 10-180 18-210 (260)
139 1cip_A Protein (guanine nucleo 99.9 1.1E-21 3.7E-26 154.5 13.3 118 61-179 192-345 (353)
140 3cb4_D GTP-binding protein LEP 99.9 1.2E-21 4.1E-26 163.5 14.1 159 13-179 3-183 (599)
141 3geh_A MNME, tRNA modification 99.9 8.6E-23 2.9E-27 166.1 6.3 154 13-180 223-386 (462)
142 1s0u_A EIF-2-gamma, translatio 99.9 5.9E-21 2E-25 153.8 16.2 164 12-179 6-199 (408)
143 1wb1_A Translation elongation 99.9 1.8E-21 6.2E-26 159.5 13.3 158 12-177 17-188 (482)
144 2ywe_A GTP-binding protein LEP 99.9 3.1E-21 1E-25 160.8 14.8 160 12-179 4-185 (600)
145 3lxw_A GTPase IMAP family memb 99.9 1.8E-21 6.1E-26 146.8 12.2 167 12-181 19-211 (247)
146 3j2k_7 ERF3, eukaryotic polype 99.9 5.9E-21 2E-25 154.9 15.8 156 10-170 13-217 (439)
147 3p26_A Elongation factor 1 alp 99.9 5E-22 1.7E-26 163.2 8.6 153 12-167 31-227 (483)
148 3ohm_A Guanine nucleotide-bind 99.9 2.5E-21 8.4E-26 150.4 12.0 120 60-180 165-320 (327)
149 1mky_A Probable GTP-binding pr 99.9 3.1E-21 1.1E-25 156.8 13.1 161 12-180 178-357 (439)
150 4dcu_A GTP-binding protein ENG 99.9 3.1E-22 1.1E-26 163.4 6.9 159 9-178 18-185 (456)
151 1kk1_A EIF2gamma; initiation o 99.9 6.1E-21 2.1E-25 153.8 14.3 167 9-179 5-201 (410)
152 3t5d_A Septin-7; GTP-binding p 99.9 1.9E-21 6.5E-26 148.8 9.3 159 12-176 6-202 (274)
153 2qag_A Septin-2, protein NEDD5 99.8 7.1E-22 2.4E-26 156.5 6.8 164 12-182 35-237 (361)
154 2xtz_A Guanine nucleotide-bind 99.8 1.4E-20 4.9E-25 148.1 13.3 118 60-178 181-345 (354)
155 2qtf_A Protein HFLX, GTP-bindi 99.8 3.6E-20 1.2E-24 146.7 15.6 163 15-182 179-358 (364)
156 1zun_B Sulfate adenylate trans 99.8 1E-20 3.5E-25 153.5 12.5 153 12-169 22-215 (434)
157 2elf_A Protein translation elo 99.8 1.2E-20 4E-25 149.8 11.1 146 16-178 23-180 (370)
158 1d2e_A Elongation factor TU (E 99.8 1.2E-20 3.9E-25 151.5 11.0 160 13-178 2-195 (397)
159 1jny_A EF-1-alpha, elongation 99.8 1.8E-21 6.2E-26 157.9 6.3 157 12-170 4-205 (435)
160 3tr5_A RF-3, peptide chain rel 99.8 3E-21 1E-25 159.4 7.4 120 10-135 9-149 (528)
161 1zcb_A G alpha I/13; GTP-bindi 99.8 7.4E-21 2.5E-25 150.2 9.2 118 61-179 200-354 (362)
162 3izy_P Translation initiation 99.8 1.8E-22 6.2E-27 166.2 -0.2 158 13-177 3-167 (537)
163 2ged_A SR-beta, signal recogni 99.8 5.8E-21 2E-25 138.5 7.2 122 11-137 45-173 (193)
164 2c78_A Elongation factor TU-A; 99.8 1E-20 3.5E-25 152.3 9.2 161 11-177 8-211 (405)
165 4fid_A G protein alpha subunit 99.8 1.3E-20 4.4E-25 146.9 9.0 118 60-178 159-328 (340)
166 3izq_1 HBS1P, elongation facto 99.8 6E-21 2E-25 160.2 7.4 156 12-168 165-362 (611)
167 1g7s_A Translation initiation 99.8 3.4E-20 1.2E-24 154.8 11.4 157 13-178 4-218 (594)
168 1r5b_A Eukaryotic peptide chai 99.8 8.1E-21 2.8E-25 155.2 5.5 156 12-169 41-243 (467)
169 3avx_A Elongation factor TS, e 99.8 1.2E-19 4E-24 158.7 11.5 161 11-177 293-485 (1289)
170 1pui_A ENGB, probable GTP-bind 99.8 2.9E-19 9.8E-24 131.3 11.0 160 10-178 22-199 (210)
171 2aka_B Dynamin-1; fusion prote 99.8 3.7E-20 1.3E-24 143.3 6.3 159 11-174 23-249 (299)
172 1f60_A Elongation factor EEF1A 99.8 5.9E-21 2E-25 155.7 1.2 152 12-168 5-202 (458)
173 3def_A T7I23.11 protein; chlor 99.8 4.8E-19 1.7E-23 134.6 11.4 122 12-136 34-167 (262)
174 3mca_A HBS1, elongation factor 99.8 9.6E-21 3.3E-25 158.5 2.0 151 11-166 174-371 (592)
175 1zo1_I IF2, translation initia 99.8 3.2E-21 1.1E-25 157.6 -1.2 156 12-174 2-163 (501)
176 1h65_A Chloroplast outer envel 99.8 1.6E-18 5.6E-23 132.3 11.6 123 13-136 38-170 (270)
177 2h5e_A Peptide chain release f 99.8 4.1E-18 1.4E-22 140.8 13.8 118 11-134 10-148 (529)
178 2dy1_A Elongation factor G; tr 99.8 3.8E-18 1.3E-22 144.7 13.7 117 11-133 6-139 (665)
179 2j69_A Bacterial dynamin-like 99.8 3.7E-18 1.3E-22 145.4 12.5 164 12-180 67-327 (695)
180 1udx_A The GTP-binding protein 99.8 1.3E-17 4.5E-22 133.7 14.2 162 15-181 158-328 (416)
181 1dar_A EF-G, elongation factor 99.8 8E-18 2.7E-22 143.3 13.5 120 9-134 7-143 (691)
182 2qnr_A Septin-2, protein NEDD5 99.8 7.3E-19 2.5E-23 136.0 6.4 164 12-182 16-218 (301)
183 1jwy_B Dynamin A GTPase domain 99.8 7.2E-18 2.5E-22 131.4 11.3 166 11-181 21-265 (315)
184 2qag_C Septin-7; cell cycle, c 99.7 8.2E-18 2.8E-22 135.0 10.1 159 13-176 30-225 (418)
185 3t34_A Dynamin-related protein 99.7 2.8E-18 9.6E-23 136.1 6.8 157 13-173 33-256 (360)
186 2xex_A Elongation factor G; GT 99.7 2E-17 7E-22 140.8 12.1 119 10-134 6-141 (693)
187 2rdo_7 EF-G, elongation factor 99.7 9.4E-17 3.2E-21 136.9 15.3 119 10-134 6-148 (704)
188 1wxq_A GTP-binding protein; st 99.7 5.3E-18 1.8E-22 135.6 6.9 84 15-98 1-114 (397)
189 1azs_C GS-alpha; complex (lyas 99.7 4.2E-17 1.4E-21 129.9 10.2 123 54-179 211-386 (402)
190 1u0l_A Probable GTPase ENGC; p 99.7 2.9E-17 9.8E-22 127.1 6.7 132 29-173 32-168 (301)
191 3p32_A Probable GTPase RV1496/ 99.7 8.9E-17 3E-21 127.2 6.8 105 61-178 171-284 (355)
192 2wsm_A Hydrogenase expression/ 99.7 2.4E-16 8.1E-21 116.6 8.1 154 13-179 29-215 (221)
193 2hf9_A Probable hydrogenase ni 99.6 5.7E-18 1.9E-22 125.8 -2.0 153 13-178 37-224 (226)
194 2x2e_A Dynamin-1; nitration, h 99.6 2E-17 6.7E-22 130.9 0.2 158 12-174 29-254 (353)
195 3vqt_A RF-3, peptide chain rel 99.6 1.5E-15 5.1E-20 126.1 11.3 118 11-134 28-166 (548)
196 1jal_A YCHF protein; nucleotid 99.6 1.4E-14 4.8E-19 113.9 15.5 143 15-160 3-239 (363)
197 2qpt_A EH domain-containing pr 99.6 6E-16 2E-20 128.6 7.6 121 10-136 61-234 (550)
198 1n0u_A EF-2, elongation factor 99.6 1.1E-15 3.9E-20 132.6 8.2 117 11-133 16-163 (842)
199 1yrb_A ATP(GTP)binding protein 99.6 2E-14 7E-19 108.9 10.8 113 62-178 109-257 (262)
200 2dby_A GTP-binding protein; GD 99.5 4.2E-14 1.4E-18 111.8 11.4 150 15-167 2-251 (368)
201 2www_A Methylmalonic aciduria 99.5 2.2E-14 7.5E-19 113.1 9.4 102 62-177 167-278 (349)
202 4a9a_A Ribosome-interacting GT 99.5 4.9E-14 1.7E-18 111.4 10.8 154 13-170 71-240 (376)
203 2p67_A LAO/AO transport system 99.5 6.4E-15 2.2E-19 115.9 4.3 104 61-177 148-260 (341)
204 3j25_A Tetracycline resistance 99.5 9.7E-15 3.3E-19 123.4 4.5 113 15-133 3-132 (638)
205 4fn5_A EF-G 1, elongation fact 99.5 6.8E-13 2.3E-17 113.5 15.5 123 5-133 4-150 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.4 3.2E-13 1.1E-17 115.0 9.4 158 12-175 49-275 (772)
207 3l82_B F-box only protein 4; T 99.4 2.7E-13 9.1E-18 97.7 6.3 108 69-179 109-224 (227)
208 2yv5_A YJEQ protein; hydrolase 99.4 1.3E-12 4.5E-17 101.0 10.0 97 72-173 66-164 (302)
209 2qm8_A GTPase/ATPase; G protei 99.4 3.1E-13 1.1E-17 106.0 4.2 104 61-177 147-260 (337)
210 3l2o_B F-box only protein 4; s 99.3 4.1E-12 1.4E-16 95.9 6.2 109 69-180 194-310 (312)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 7E-11 2.4E-15 94.0 11.7 86 12-97 18-127 (392)
212 2ohf_A Protein OLA1, GTP-bindi 99.2 7.3E-12 2.5E-16 99.5 5.4 89 12-100 20-131 (396)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 2.9E-11 9.8E-16 95.9 2.8 140 15-164 163-317 (369)
214 3h2y_A GTPase family protein; 98.9 1.3E-10 4.6E-15 92.1 1.2 134 15-158 161-310 (368)
215 3h2y_A GTPase family protein; 98.9 1.8E-09 6.1E-14 85.6 5.7 97 71-176 55-158 (368)
216 2qag_B Septin-6, protein NEDD5 98.9 1.4E-09 4.9E-14 87.1 5.1 139 14-159 42-217 (427)
217 3sop_A Neuronal-specific septi 98.9 7.5E-09 2.6E-13 78.6 8.9 136 14-156 2-178 (270)
218 2j37_W Signal recognition part 98.8 5.1E-09 1.7E-13 85.9 7.1 151 12-175 99-310 (504)
219 1tq4_A IIGP1, interferon-induc 98.8 2.4E-08 8.1E-13 80.0 10.3 161 13-182 68-257 (413)
220 1puj_A YLQF, conserved hypothe 98.8 4.5E-09 1.5E-13 80.3 5.0 59 12-73 118-176 (282)
221 3ec1_A YQEH GTPase; atnos1, at 98.8 4.6E-09 1.6E-13 83.3 4.2 98 71-177 57-161 (369)
222 3cnl_A YLQF, putative uncharac 98.8 3E-09 1E-13 80.4 2.9 57 15-74 100-156 (262)
223 1puj_A YLQF, conserved hypothe 98.8 1.7E-08 5.8E-13 77.1 7.0 100 68-177 5-105 (282)
224 3dm5_A SRP54, signal recogniti 98.5 3.7E-07 1.3E-11 73.6 7.7 86 62-159 183-274 (443)
225 1t9h_A YLOQ, probable GTPase E 98.3 4E-07 1.4E-11 70.2 4.4 90 77-170 78-169 (307)
226 3cnl_A YLQF, putative uncharac 98.3 3.6E-07 1.2E-11 69.0 4.1 93 69-174 4-97 (262)
227 1f5n_A Interferon-induced guan 98.3 1.2E-06 4E-11 73.2 6.3 63 12-74 36-103 (592)
228 3kl4_A SRP54, signal recogniti 98.1 1.9E-06 6.6E-11 69.4 4.8 87 61-159 179-273 (433)
229 2v3c_C SRP54, signal recogniti 98.0 1.3E-05 4.4E-10 64.7 7.8 85 61-158 180-272 (432)
230 1j8m_F SRP54, signal recogniti 98.0 3.7E-06 1.3E-10 64.6 4.5 91 61-166 180-279 (297)
231 3szr_A Interferon-induced GTP- 98.0 1.2E-05 4E-10 67.9 7.2 26 15-40 46-71 (608)
232 3e70_C DPA, signal recognition 97.9 1.2E-05 4.3E-10 62.5 5.1 84 63-158 213-302 (328)
233 2rcn_A Probable GTPase ENGC; Y 97.9 3.9E-05 1.3E-09 60.3 7.8 86 81-171 126-212 (358)
234 1bif_A 6-phosphofructo-2-kinas 97.9 4.7E-07 1.6E-11 74.1 -3.5 101 12-114 37-147 (469)
235 3q5d_A Atlastin-1; G protein, 97.8 4.8E-05 1.6E-09 61.5 6.6 25 12-36 65-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.5 4.8E-05 1.6E-09 53.9 3.1 22 16-37 2-23 (178)
237 3ney_A 55 kDa erythrocyte memb 97.4 6.5E-05 2.2E-09 54.0 2.9 32 6-37 11-42 (197)
238 2xxa_A Signal recognition part 97.4 0.00053 1.8E-08 55.3 8.4 84 61-157 183-273 (433)
239 1kgd_A CASK, peripheral plasma 97.4 7.2E-05 2.5E-09 52.9 2.9 22 16-37 7-28 (180)
240 1lvg_A Guanylate kinase, GMP k 97.4 8.1E-05 2.8E-09 53.6 2.9 22 16-37 6-27 (198)
241 2rcn_A Probable GTPase ENGC; Y 97.4 0.00015 5.2E-09 56.9 4.4 24 16-39 217-240 (358)
242 1t9h_A YLOQ, probable GTPase E 97.4 4.7E-05 1.6E-09 58.6 1.4 24 15-38 174-197 (307)
243 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 52.2 2.8 21 17-37 4-24 (186)
244 1zp6_A Hypothetical protein AT 97.3 0.00012 4.2E-09 52.0 3.0 23 15-37 10-32 (191)
245 3tr0_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 52.7 2.9 22 16-37 9-30 (205)
246 2yv5_A YJEQ protein; hydrolase 97.3 0.00059 2E-08 52.4 6.6 24 15-39 166-189 (302)
247 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.6E-09 52.7 2.8 24 15-38 21-44 (207)
248 4gp7_A Metallophosphoesterase; 97.3 0.00014 4.7E-09 51.0 2.8 20 16-35 11-30 (171)
249 1s96_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 53.2 2.9 24 15-38 17-40 (219)
250 2ffh_A Protein (FFH); SRP54, s 97.2 0.0011 3.6E-08 53.4 8.0 86 62-159 181-272 (425)
251 1z6g_A Guanylate kinase; struc 97.2 0.00016 5.3E-09 52.9 2.8 24 15-38 24-47 (218)
252 3c8u_A Fructokinase; YP_612366 97.2 0.00017 6E-09 52.2 2.6 26 12-37 20-45 (208)
253 3tif_A Uncharacterized ABC tra 97.2 0.0002 7E-09 53.0 3.0 23 16-38 33-55 (235)
254 1htw_A HI0065; nucleotide-bind 97.2 0.00021 7.2E-09 49.5 2.8 24 15-38 34-57 (158)
255 1ex7_A Guanylate kinase; subst 97.2 0.00023 7.8E-09 50.7 3.1 21 17-37 4-24 (186)
256 3tau_A Guanylate kinase, GMP k 97.2 0.00021 7.2E-09 51.8 2.9 23 16-38 10-32 (208)
257 2pcj_A ABC transporter, lipopr 97.1 0.00024 8.2E-09 52.2 3.0 23 16-38 32-54 (224)
258 1kag_A SKI, shikimate kinase I 97.1 0.00027 9.1E-09 49.4 2.9 23 15-37 5-27 (173)
259 3asz_A Uridine kinase; cytidin 97.1 0.00029 9.8E-09 51.0 3.1 25 13-37 5-29 (211)
260 2onk_A Molybdate/tungstate ABC 97.1 0.00029 1E-08 52.3 3.1 23 16-38 26-48 (240)
261 2qor_A Guanylate kinase; phosp 97.1 0.0003 1E-08 50.7 3.1 23 15-37 13-35 (204)
262 2bdt_A BH3686; alpha-beta prot 97.1 0.00028 9.7E-09 50.1 2.8 21 16-36 4-24 (189)
263 2j41_A Guanylate kinase; GMP, 97.1 0.00028 9.6E-09 50.7 2.8 24 15-38 7-30 (207)
264 1sgw_A Putative ABC transporte 97.1 0.00031 1.1E-08 51.2 3.0 23 16-38 37-59 (214)
265 3lw7_A Adenylate kinase relate 97.1 0.00031 1.1E-08 48.9 3.0 19 16-34 3-21 (179)
266 1b0u_A Histidine permease; ABC 97.1 0.00031 1.1E-08 52.9 3.0 23 16-38 34-56 (262)
267 2cbz_A Multidrug resistance-as 97.1 0.00034 1.2E-08 51.8 3.2 23 16-38 33-55 (237)
268 2cdn_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 50.3 3.1 28 9-36 15-42 (201)
269 3gfo_A Cobalt import ATP-bindi 97.1 0.00032 1.1E-08 53.2 3.0 23 16-38 36-58 (275)
270 2bbw_A Adenylate kinase 4, AK4 97.0 0.00038 1.3E-08 51.7 3.4 21 15-35 28-48 (246)
271 4eun_A Thermoresistant glucoki 97.0 0.00033 1.1E-08 50.4 2.9 22 15-36 30-51 (200)
272 1mv5_A LMRA, multidrug resista 97.0 0.00038 1.3E-08 51.7 3.3 23 16-38 30-52 (243)
273 1ly1_A Polynucleotide kinase; 97.0 0.00042 1.5E-08 48.5 3.4 22 15-36 3-24 (181)
274 2ff7_A Alpha-hemolysin translo 97.0 0.00038 1.3E-08 51.9 3.2 23 16-38 37-59 (247)
275 1g6h_A High-affinity branched- 97.0 0.00034 1.2E-08 52.5 3.0 23 16-38 35-57 (257)
276 3kb2_A SPBC2 prophage-derived 97.0 0.00038 1.3E-08 48.4 3.1 21 16-36 3-23 (173)
277 4g1u_C Hemin import ATP-bindin 97.0 0.00036 1.2E-08 52.6 3.1 23 16-38 39-61 (266)
278 2olj_A Amino acid ABC transpor 97.0 0.00037 1.3E-08 52.5 3.0 23 16-38 52-74 (263)
279 2pze_A Cystic fibrosis transme 97.0 0.00041 1.4E-08 51.1 3.3 23 16-38 36-58 (229)
280 2i3b_A HCR-ntpase, human cance 97.0 0.00034 1.2E-08 50.0 2.7 22 16-37 3-24 (189)
281 1ji0_A ABC transporter; ATP bi 97.0 0.00038 1.3E-08 51.7 3.0 23 16-38 34-56 (240)
282 1vpl_A ABC transporter, ATP-bi 97.0 0.00039 1.3E-08 52.1 3.0 23 16-38 43-65 (256)
283 2qi9_C Vitamin B12 import ATP- 97.0 0.00044 1.5E-08 51.6 3.3 23 16-38 28-50 (249)
284 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00042 1.4E-08 51.8 3.1 22 16-37 31-52 (250)
285 2ghi_A Transport protein; mult 97.0 0.00046 1.6E-08 51.9 3.2 22 16-37 48-69 (260)
286 1qhx_A CPT, protein (chloramph 97.0 0.00044 1.5E-08 48.5 3.0 21 16-36 5-25 (178)
287 3ec2_A DNA replication protein 97.0 0.00034 1.1E-08 49.3 2.4 23 15-37 39-61 (180)
288 2ihy_A ABC transporter, ATP-bi 97.0 0.00047 1.6E-08 52.4 3.3 23 16-38 49-71 (279)
289 1knq_A Gluconate kinase; ALFA/ 97.0 0.00048 1.7E-08 48.2 3.2 22 15-36 9-30 (175)
290 2ixe_A Antigen peptide transpo 97.0 0.00048 1.6E-08 52.1 3.2 23 16-38 47-69 (271)
291 2zu0_C Probable ATP-dependent 97.0 0.0005 1.7E-08 51.9 3.3 22 16-37 48-69 (267)
292 3fb4_A Adenylate kinase; psych 96.9 0.00045 1.5E-08 50.1 2.9 21 16-36 2-22 (216)
293 3vaa_A Shikimate kinase, SK; s 96.9 0.00054 1.8E-08 49.2 3.3 23 14-36 25-47 (199)
294 2v9p_A Replication protein E1; 96.9 0.00045 1.5E-08 53.1 3.0 23 15-37 127-149 (305)
295 3t61_A Gluconokinase; PSI-biol 96.9 0.00046 1.6E-08 49.6 2.8 22 15-36 19-40 (202)
296 1jjv_A Dephospho-COA kinase; P 96.9 0.00062 2.1E-08 49.0 3.5 22 15-36 3-24 (206)
297 1u0l_A Probable GTPase ENGC; p 96.9 0.00059 2E-08 52.4 3.6 25 16-40 171-195 (301)
298 3dl0_A Adenylate kinase; phosp 96.9 0.00048 1.6E-08 50.0 2.9 21 16-36 2-22 (216)
299 1ukz_A Uridylate kinase; trans 96.9 0.00065 2.2E-08 48.7 3.6 26 11-36 12-37 (203)
300 3b85_A Phosphate starvation-in 96.9 0.00034 1.2E-08 50.8 2.1 22 16-37 24-45 (208)
301 2nq2_C Hypothetical ABC transp 96.9 0.00055 1.9E-08 51.2 3.2 23 16-38 33-55 (253)
302 2eyu_A Twitching motility prot 96.9 0.00046 1.6E-08 51.9 2.8 23 15-37 26-48 (261)
303 2yz2_A Putative ABC transporte 96.9 0.00055 1.9E-08 51.6 3.2 23 16-38 35-57 (266)
304 2if2_A Dephospho-COA kinase; a 96.9 0.0005 1.7E-08 49.4 2.8 22 15-36 2-23 (204)
305 1np6_A Molybdopterin-guanine d 96.9 0.00054 1.8E-08 48.2 2.9 23 15-37 7-29 (174)
306 2pjz_A Hypothetical protein ST 96.9 0.00059 2E-08 51.4 3.3 23 16-38 32-54 (263)
307 3uie_A Adenylyl-sulfate kinase 96.9 0.00052 1.8E-08 49.3 2.8 24 14-37 25-48 (200)
308 3aez_A Pantothenate kinase; tr 96.9 0.00065 2.2E-08 52.4 3.5 27 11-37 87-113 (312)
309 1nks_A Adenylate kinase; therm 96.9 0.00065 2.2E-08 48.1 3.3 22 15-36 2-23 (194)
310 3sr0_A Adenylate kinase; phosp 96.9 0.00059 2E-08 49.4 3.0 21 16-36 2-22 (206)
311 2qt1_A Nicotinamide riboside k 96.9 0.00076 2.6E-08 48.6 3.7 27 11-37 18-44 (207)
312 3lnc_A Guanylate kinase, GMP k 96.9 0.00034 1.2E-08 51.4 1.7 23 15-37 28-51 (231)
313 1cke_A CK, MSSA, protein (cyti 96.9 0.00063 2.1E-08 49.7 3.1 22 15-36 6-27 (227)
314 3cm0_A Adenylate kinase; ATP-b 96.9 0.00085 2.9E-08 47.3 3.7 23 14-36 4-26 (186)
315 2ehv_A Hypothetical protein PH 96.8 0.00063 2.2E-08 50.3 3.1 20 16-35 32-51 (251)
316 1aky_A Adenylate kinase; ATP:A 96.8 0.00062 2.1E-08 49.6 2.9 23 14-36 4-26 (220)
317 4a74_A DNA repair and recombin 96.8 0.00058 2E-08 49.9 2.7 22 16-37 27-48 (231)
318 2f1r_A Molybdopterin-guanine d 96.8 0.00035 1.2E-08 49.1 1.4 22 16-37 4-25 (171)
319 3trf_A Shikimate kinase, SK; a 96.8 0.00075 2.6E-08 47.6 3.1 22 15-36 6-27 (185)
320 3tlx_A Adenylate kinase 2; str 96.8 0.00082 2.8E-08 49.9 3.5 24 13-36 28-51 (243)
321 2jaq_A Deoxyguanosine kinase; 96.8 0.00079 2.7E-08 48.1 3.3 21 16-36 2-22 (205)
322 2rhm_A Putative kinase; P-loop 96.8 0.0008 2.7E-08 47.7 3.2 23 14-36 5-27 (193)
323 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00068 2.3E-08 53.3 3.0 24 16-39 32-55 (359)
324 1kht_A Adenylate kinase; phosp 96.8 0.00084 2.9E-08 47.5 3.2 22 15-36 4-25 (192)
325 3nh6_A ATP-binding cassette SU 96.8 0.00055 1.9E-08 52.7 2.3 23 16-38 82-104 (306)
326 1lw7_A Transcriptional regulat 96.8 0.00066 2.2E-08 53.6 2.8 25 14-38 170-194 (365)
327 2jeo_A Uridine-cytidine kinase 96.8 0.00079 2.7E-08 50.0 3.1 24 13-36 24-47 (245)
328 2bbs_A Cystic fibrosis transme 96.8 0.00079 2.7E-08 51.4 3.1 23 16-38 66-88 (290)
329 1tev_A UMP-CMP kinase; ploop, 96.8 0.00095 3.3E-08 47.3 3.4 23 14-36 3-25 (196)
330 2x8a_A Nuclear valosin-contain 96.8 0.00072 2.5E-08 51.2 2.8 21 17-37 47-67 (274)
331 1e4v_A Adenylate kinase; trans 96.7 0.00079 2.7E-08 48.8 2.9 21 16-36 2-22 (214)
332 1via_A Shikimate kinase; struc 96.7 0.00078 2.7E-08 47.2 2.8 21 16-36 6-26 (175)
333 3uc9_A Increased recombination 96.7 0.0025 8.4E-08 46.6 5.4 87 13-104 28-121 (233)
334 1z47_A CYSA, putative ABC-tran 96.7 0.00081 2.8E-08 52.8 3.1 23 16-38 43-65 (355)
335 3tqc_A Pantothenate kinase; bi 96.7 0.001 3.5E-08 51.5 3.5 26 11-36 89-114 (321)
336 2yyz_A Sugar ABC transporter, 96.7 0.00087 3E-08 52.7 3.1 23 16-38 31-53 (359)
337 2it1_A 362AA long hypothetical 96.7 0.0009 3.1E-08 52.7 3.1 23 16-38 31-53 (362)
338 1y63_A LMAJ004144AAA protein; 96.7 0.001 3.5E-08 47.1 3.1 24 14-37 10-33 (184)
339 3tui_C Methionine import ATP-b 96.7 0.00092 3.1E-08 52.6 3.1 23 16-38 56-78 (366)
340 3rlf_A Maltose/maltodextrin im 96.7 0.00091 3.1E-08 52.9 3.1 23 16-38 31-53 (381)
341 1zd8_A GTP:AMP phosphotransfer 96.7 0.00088 3E-08 49.1 2.9 22 14-35 7-28 (227)
342 2plr_A DTMP kinase, probable t 96.7 0.0012 4E-08 47.5 3.4 22 15-36 5-26 (213)
343 1ixz_A ATP-dependent metallopr 96.7 0.0009 3.1E-08 49.8 2.9 21 17-37 52-72 (254)
344 1gvn_B Zeta; postsegregational 96.7 0.001 3.4E-08 50.8 3.1 25 12-36 31-55 (287)
345 3co5_A Putative two-component 96.7 0.0033 1.1E-07 42.5 5.4 23 15-37 28-50 (143)
346 1g29_1 MALK, maltose transport 96.7 0.00097 3.3E-08 52.7 3.1 23 16-38 31-53 (372)
347 1v43_A Sugar-binding transport 96.7 0.001 3.4E-08 52.6 3.1 23 16-38 39-61 (372)
348 1odf_A YGR205W, hypothetical 3 96.7 0.0012 4.2E-08 50.3 3.5 25 11-35 28-52 (290)
349 2pt5_A Shikimate kinase, SK; a 96.6 0.0012 4.2E-08 45.7 3.2 21 16-36 2-22 (168)
350 2kjq_A DNAA-related protein; s 96.6 0.00058 2E-08 46.7 1.5 22 16-37 38-59 (149)
351 1xjc_A MOBB protein homolog; s 96.6 0.0011 3.9E-08 46.3 3.0 23 14-36 4-26 (169)
352 3iij_A Coilin-interacting nucl 96.6 0.0011 3.7E-08 46.6 2.9 23 14-36 11-33 (180)
353 1sq5_A Pantothenate kinase; P- 96.6 0.0012 4.2E-08 50.8 3.4 26 12-37 78-103 (308)
354 3jvv_A Twitching mobility prot 96.6 0.001 3.5E-08 52.3 2.8 22 16-37 125-146 (356)
355 1ak2_A Adenylate kinase isoenz 96.6 0.0012 4E-08 48.6 3.0 24 13-36 15-38 (233)
356 3d31_A Sulfate/molybdate ABC t 96.6 0.00081 2.8E-08 52.7 2.3 23 16-38 28-50 (348)
357 1uf9_A TT1252 protein; P-loop, 96.6 0.0014 4.6E-08 46.9 3.3 25 13-37 7-31 (203)
358 1zak_A Adenylate kinase; ATP:A 96.6 0.00089 3E-08 48.8 2.3 23 14-36 5-27 (222)
359 1uj2_A Uridine-cytidine kinase 96.6 0.0013 4.4E-08 49.0 3.2 26 11-36 19-44 (252)
360 3be4_A Adenylate kinase; malar 96.6 0.0011 3.8E-08 48.2 2.8 23 14-36 5-27 (217)
361 1jbk_A CLPB protein; beta barr 96.6 0.0013 4.5E-08 46.1 3.1 23 15-37 44-66 (195)
362 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.5E-08 48.0 3.1 21 16-36 2-22 (223)
363 1rz3_A Hypothetical protein rb 96.6 0.0014 5E-08 47.0 3.2 25 12-36 20-44 (201)
364 3umf_A Adenylate kinase; rossm 96.6 0.0018 6E-08 47.3 3.6 22 15-36 30-51 (217)
365 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0012 4.2E-08 51.3 3.0 23 16-38 173-195 (330)
366 2yvu_A Probable adenylyl-sulfa 96.6 0.0019 6.5E-08 45.6 3.7 24 13-36 12-35 (186)
367 1qf9_A UMP/CMP kinase, protein 96.6 0.0017 5.9E-08 45.9 3.5 22 15-36 7-28 (194)
368 1rj9_A FTSY, signal recognitio 96.5 0.0012 4.3E-08 50.7 2.8 85 63-159 186-282 (304)
369 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.3E-08 46.3 3.2 23 14-36 9-31 (196)
370 2ze6_A Isopentenyl transferase 96.5 0.0014 4.9E-08 48.9 3.1 21 16-36 3-23 (253)
371 3gd7_A Fusion complex of cysti 96.5 0.0013 4.5E-08 52.3 3.0 22 16-37 49-70 (390)
372 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0016 5.6E-08 48.7 3.4 23 14-36 4-26 (260)
373 1in4_A RUVB, holliday junction 96.5 0.0013 4.4E-08 51.2 2.8 22 16-37 53-74 (334)
374 1e6c_A Shikimate kinase; phosp 96.5 0.0015 5.2E-08 45.4 3.0 21 16-36 4-24 (173)
375 4e22_A Cytidylate kinase; P-lo 96.5 0.0016 5.6E-08 48.5 3.3 21 15-35 28-48 (252)
376 2p5t_B PEZT; postsegregational 96.5 0.001 3.6E-08 49.6 2.2 26 11-36 29-54 (253)
377 2gza_A Type IV secretion syste 96.5 0.0013 4.6E-08 51.8 2.9 24 15-38 176-199 (361)
378 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.6E-08 46.5 3.2 23 15-37 5-27 (204)
379 1iy2_A ATP-dependent metallopr 96.5 0.0014 4.7E-08 49.6 2.9 21 17-37 76-96 (278)
380 3b9q_A Chloroplast SRP recepto 96.5 0.0014 4.9E-08 50.2 2.9 24 13-36 99-122 (302)
381 1oxx_K GLCV, glucose, ABC tran 96.5 0.00081 2.8E-08 52.8 1.5 23 16-38 33-55 (353)
382 2bwj_A Adenylate kinase 5; pho 96.5 0.0018 6E-08 46.1 3.2 23 14-36 12-34 (199)
383 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.5E-08 45.9 2.9 21 16-36 4-24 (184)
384 1gtv_A TMK, thymidylate kinase 96.5 0.00068 2.3E-08 49.0 0.9 21 16-36 2-22 (214)
385 2ewv_A Twitching motility prot 96.5 0.0015 5.2E-08 51.6 3.0 23 15-37 137-159 (372)
386 2z0h_A DTMP kinase, thymidylat 96.4 0.0017 5.7E-08 46.2 2.9 21 16-36 2-22 (197)
387 2pbr_A DTMP kinase, thymidylat 96.4 0.0019 6.4E-08 45.8 3.2 21 16-36 2-22 (195)
388 2wwf_A Thymidilate kinase, put 96.4 0.0018 6.1E-08 46.6 3.1 23 14-36 10-32 (212)
389 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0082 2.8E-07 48.5 7.1 63 12-74 65-152 (457)
390 1nn5_A Similar to deoxythymidy 96.4 0.0016 5.6E-08 46.9 2.8 23 14-36 9-31 (215)
391 1vht_A Dephospho-COA kinase; s 96.4 0.0021 7.1E-08 46.6 3.4 23 14-36 4-26 (218)
392 2vli_A Antibiotic resistance p 96.4 0.001 3.5E-08 46.7 1.6 23 14-36 5-27 (183)
393 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0017 5.8E-08 47.3 2.8 22 16-37 25-46 (235)
394 2vp4_A Deoxynucleoside kinase; 96.4 0.0015 5E-08 48.0 2.4 26 12-37 18-43 (230)
395 1lv7_A FTSH; alpha/beta domain 96.4 0.0018 6.1E-08 48.3 2.9 23 15-37 46-68 (257)
396 1zuh_A Shikimate kinase; alpha 96.4 0.0022 7.6E-08 44.4 3.2 22 15-36 8-29 (168)
397 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0015 5E-08 53.2 2.5 23 15-37 139-161 (460)
398 1p9r_A General secretion pathw 96.4 0.0017 5.9E-08 52.1 2.8 22 16-37 169-190 (418)
399 2pez_A Bifunctional 3'-phospho 96.4 0.0021 7E-08 45.2 3.0 22 15-36 6-27 (179)
400 3kta_A Chromosome segregation 96.4 0.002 7E-08 45.2 3.0 21 16-36 28-48 (182)
401 2oap_1 GSPE-2, type II secreti 96.4 0.0018 6.3E-08 53.3 3.0 23 16-38 262-284 (511)
402 3n70_A Transport activator; si 96.3 0.0035 1.2E-07 42.5 3.8 25 14-38 24-48 (145)
403 2p65_A Hypothetical protein PF 96.3 0.0018 6.3E-08 45.2 2.5 23 15-37 44-66 (187)
404 2w58_A DNAI, primosome compone 96.3 0.0022 7.5E-08 45.9 2.8 23 15-37 55-77 (202)
405 2f6r_A COA synthase, bifunctio 96.3 0.0026 9E-08 48.2 3.3 24 12-35 73-96 (281)
406 3r20_A Cytidylate kinase; stru 96.3 0.0023 7.8E-08 47.2 2.9 24 13-36 8-31 (233)
407 2obl_A ESCN; ATPase, hydrolase 96.3 0.0023 8E-08 50.1 3.0 24 15-38 72-95 (347)
408 3bos_A Putative DNA replicatio 96.3 0.0027 9.2E-08 46.4 3.2 23 14-36 52-74 (242)
409 1cr0_A DNA primase/helicase; R 96.2 0.0022 7.6E-08 48.9 2.7 22 16-37 37-58 (296)
410 3nwj_A ATSK2; P loop, shikimat 96.2 0.0023 7.9E-08 47.7 2.7 22 15-36 49-70 (250)
411 2og2_A Putative signal recogni 96.2 0.0024 8.2E-08 50.2 2.9 24 13-36 156-179 (359)
412 1nij_A Hypothetical protein YJ 96.2 0.0016 5.6E-08 50.3 1.9 24 15-38 5-28 (318)
413 1p5z_B DCK, deoxycytidine kina 96.2 0.0021 7.2E-08 48.2 2.4 26 11-36 21-46 (263)
414 2yhs_A FTSY, cell division pro 96.2 0.0025 8.6E-08 52.1 2.9 24 13-36 292-315 (503)
415 1n0w_A DNA repair protein RAD5 96.2 0.0027 9.3E-08 46.6 2.9 22 16-37 26-47 (243)
416 1m7g_A Adenylylsulfate kinase; 96.2 0.0028 9.7E-08 45.8 2.9 23 14-36 25-47 (211)
417 2cvh_A DNA repair and recombin 96.2 0.0028 9.4E-08 45.8 2.8 21 16-36 22-42 (220)
418 2grj_A Dephospho-COA kinase; T 96.2 0.0037 1.3E-07 44.6 3.4 24 13-36 11-34 (192)
419 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0049 1.7E-07 51.1 4.4 23 16-38 49-71 (538)
420 1ltq_A Polynucleotide kinase; 96.1 0.0032 1.1E-07 48.1 3.1 22 15-36 3-24 (301)
421 4eaq_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 46.1 3.1 25 13-37 25-49 (229)
422 3b9p_A CG5977-PA, isoform A; A 96.1 0.003 1E-07 48.1 2.8 24 14-37 54-77 (297)
423 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0032 1.1E-07 46.8 2.9 23 14-36 39-61 (262)
424 3h4m_A Proteasome-activating n 96.1 0.0031 1.1E-07 47.6 2.8 24 14-37 51-74 (285)
425 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.004 1.4E-07 42.5 3.1 19 17-35 26-44 (149)
426 1svm_A Large T antigen; AAA+ f 96.1 0.0032 1.1E-07 49.8 2.8 23 14-36 169-191 (377)
427 3euj_A Chromosome partition pr 96.0 0.0032 1.1E-07 51.4 2.9 22 15-36 30-51 (483)
428 1tue_A Replication protein E1; 96.0 0.0029 1E-07 45.6 2.3 21 16-36 60-80 (212)
429 3t15_A Ribulose bisphosphate c 96.0 0.0036 1.2E-07 47.8 3.0 25 13-37 35-59 (293)
430 2chg_A Replication factor C sm 96.0 0.0039 1.3E-07 44.8 3.0 21 16-36 40-60 (226)
431 2dpy_A FLII, flagellum-specifi 96.0 0.0036 1.2E-07 50.6 3.0 23 16-38 159-181 (438)
432 3ozx_A RNAse L inhibitor; ATP 96.0 0.0046 1.6E-07 51.3 3.7 24 16-39 27-50 (538)
433 3cf0_A Transitional endoplasmi 96.0 0.0034 1.2E-07 48.0 2.8 23 15-37 50-72 (301)
434 1njg_A DNA polymerase III subu 96.0 0.004 1.4E-07 45.3 3.0 21 16-36 47-67 (250)
435 3b60_A Lipid A export ATP-bind 96.0 0.005 1.7E-07 51.6 3.8 23 16-38 371-393 (582)
436 3j16_B RLI1P; ribosome recycli 95.9 0.0053 1.8E-07 51.7 3.8 24 16-39 105-128 (608)
437 3b5x_A Lipid A export ATP-bind 95.9 0.0059 2E-07 51.2 4.0 23 16-38 371-393 (582)
438 1l8q_A Chromosomal replication 95.9 0.004 1.4E-07 48.1 2.8 23 15-37 38-60 (324)
439 3bk7_A ABC transporter ATP-bin 95.9 0.0072 2.5E-07 50.9 4.3 24 16-39 119-142 (607)
440 3zvl_A Bifunctional polynucleo 95.9 0.0056 1.9E-07 49.1 3.5 25 13-37 257-281 (416)
441 3syl_A Protein CBBX; photosynt 95.8 0.0053 1.8E-07 46.9 3.2 24 13-36 66-89 (309)
442 1nlf_A Regulatory protein REPA 95.8 0.0045 1.6E-07 46.7 2.7 21 16-36 32-52 (279)
443 1d2n_A N-ethylmaleimide-sensit 95.8 0.0074 2.5E-07 45.3 3.9 26 12-37 62-87 (272)
444 3ozx_A RNAse L inhibitor; ATP 95.8 0.0054 1.9E-07 50.9 3.3 24 16-39 296-319 (538)
445 3gmt_A Adenylate kinase; ssgci 95.8 0.0059 2E-07 44.8 3.1 23 14-36 8-30 (230)
446 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0056 1.9E-07 50.8 3.3 24 16-39 314-337 (538)
447 3ake_A Cytidylate kinase; CMP 95.8 0.0062 2.1E-07 43.5 3.1 21 16-36 4-24 (208)
448 1ofh_A ATP-dependent HSL prote 95.8 0.0057 1.9E-07 46.6 3.1 24 14-37 50-73 (310)
449 3bk7_A ABC transporter ATP-bin 95.8 0.0059 2E-07 51.4 3.3 24 16-39 384-407 (607)
450 4b4t_K 26S protease regulatory 95.7 0.0053 1.8E-07 49.4 2.9 24 14-37 206-229 (428)
451 4b4t_M 26S protease regulatory 95.7 0.0055 1.9E-07 49.4 2.9 25 13-37 214-238 (434)
452 2yl4_A ATP-binding cassette SU 95.7 0.0038 1.3E-07 52.5 2.1 23 16-38 372-394 (595)
453 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.006 2E-07 48.1 3.1 19 17-35 26-44 (365)
454 4a82_A Cystic fibrosis transme 95.7 0.0052 1.8E-07 51.5 2.8 23 16-38 369-391 (578)
455 1sxj_E Activator 1 40 kDa subu 95.7 0.0045 1.5E-07 48.2 2.3 20 17-36 39-58 (354)
456 1q3t_A Cytidylate kinase; nucl 95.7 0.0063 2.2E-07 44.7 3.0 25 12-36 14-38 (236)
457 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0056 1.9E-07 47.4 2.8 23 15-37 46-68 (322)
458 4fcw_A Chaperone protein CLPB; 95.7 0.0057 2E-07 46.7 2.8 23 15-37 48-70 (311)
459 2dr3_A UPF0273 protein PH0284; 95.7 0.0066 2.2E-07 44.6 3.0 21 16-36 25-45 (247)
460 1sxj_C Activator 1 40 kDa subu 95.7 0.0058 2E-07 47.5 2.8 22 16-37 48-69 (340)
461 4b4t_L 26S protease subunit RP 95.6 0.0061 2.1E-07 49.1 2.9 24 14-37 215-238 (437)
462 2qby_A CDC6 homolog 1, cell di 95.6 0.0059 2E-07 47.9 2.8 24 14-37 45-68 (386)
463 2px0_A Flagellar biosynthesis 95.6 0.0067 2.3E-07 46.4 3.0 86 61-158 182-273 (296)
464 3qf4_B Uncharacterized ABC tra 95.6 0.006 2E-07 51.3 2.9 23 16-38 383-405 (598)
465 3eie_A Vacuolar protein sortin 95.6 0.0062 2.1E-07 47.0 2.8 24 14-37 51-74 (322)
466 1c9k_A COBU, adenosylcobinamid 95.6 0.0077 2.6E-07 42.5 3.0 21 17-37 2-22 (180)
467 3qf4_A ABC transporter, ATP-bi 95.6 0.0052 1.8E-07 51.6 2.4 23 16-38 371-393 (587)
468 3j16_B RLI1P; ribosome recycli 95.6 0.0068 2.3E-07 51.0 3.1 23 17-39 381-403 (608)
469 4b4t_J 26S protease regulatory 95.6 0.0067 2.3E-07 48.3 2.8 24 14-37 182-205 (405)
470 1fnn_A CDC6P, cell division co 95.5 0.0071 2.4E-07 47.6 2.9 22 16-37 46-67 (389)
471 2qmh_A HPR kinase/phosphorylas 95.5 0.0077 2.6E-07 43.2 2.7 23 15-37 35-57 (205)
472 2r62_A Cell division protease 95.5 0.0032 1.1E-07 47.1 0.8 21 16-36 46-66 (268)
473 1pzn_A RAD51, DNA repair and r 95.5 0.0072 2.5E-07 47.3 2.7 23 15-37 132-154 (349)
474 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0095 3.3E-07 46.6 3.4 22 14-35 24-45 (359)
475 1vma_A Cell division protein F 95.5 0.008 2.7E-07 46.2 2.9 87 62-160 187-285 (306)
476 4dzz_A Plasmid partitioning pr 95.5 0.042 1.4E-06 39.0 6.6 86 62-155 76-162 (206)
477 3crm_A TRNA delta(2)-isopenten 95.5 0.0087 3E-07 46.2 3.1 22 15-36 6-27 (323)
478 3d3q_A TRNA delta(2)-isopenten 95.4 0.0086 2.9E-07 46.6 3.0 22 15-36 8-29 (340)
479 1sxj_D Activator 1 41 kDa subu 95.4 0.0079 2.7E-07 46.7 2.8 21 17-37 61-81 (353)
480 2qgz_A Helicase loader, putati 95.4 0.0097 3.3E-07 45.7 3.2 23 14-36 152-174 (308)
481 3uk6_A RUVB-like 2; hexameric 95.4 0.0083 2.8E-07 47.0 2.9 23 15-37 71-93 (368)
482 2bjv_A PSP operon transcriptio 95.4 0.013 4.5E-07 43.7 3.9 24 15-38 30-53 (265)
483 2iw3_A Elongation factor 3A; a 95.4 0.0095 3.3E-07 52.7 3.3 24 16-39 463-486 (986)
484 3cr8_A Sulfate adenylyltranfer 95.3 0.0064 2.2E-07 50.6 2.1 25 13-37 368-392 (552)
485 3qks_A DNA double-strand break 95.3 0.011 3.7E-07 42.6 3.1 19 17-35 26-44 (203)
486 2qp9_X Vacuolar protein sortin 95.3 0.0096 3.3E-07 46.7 3.0 23 15-37 85-107 (355)
487 3m6a_A ATP-dependent protease 95.3 0.0084 2.9E-07 49.8 2.8 22 16-37 110-131 (543)
488 2dhr_A FTSH; AAA+ protein, hex 95.3 0.0086 2.9E-07 49.2 2.8 22 16-37 66-87 (499)
489 2z4s_A Chromosomal replication 95.3 0.0087 3E-07 48.4 2.8 23 14-36 130-152 (440)
490 3tqf_A HPR(Ser) kinase; transf 95.3 0.011 3.8E-07 41.3 2.9 23 15-37 17-39 (181)
491 3pfi_A Holliday junction ATP-d 95.3 0.0098 3.3E-07 46.1 2.9 23 15-37 56-78 (338)
492 1um8_A ATP-dependent CLP prote 95.3 0.01 3.5E-07 46.8 3.1 24 14-37 72-95 (376)
493 2v1u_A Cell division control p 95.3 0.0088 3E-07 46.9 2.7 23 14-36 44-66 (387)
494 4b4t_I 26S protease regulatory 95.3 0.0095 3.2E-07 47.8 2.8 24 14-37 216-239 (437)
495 2ce7_A Cell division protein F 95.3 0.0095 3.3E-07 48.6 2.9 22 16-37 51-72 (476)
496 2iw3_A Elongation factor 3A; a 95.3 0.0065 2.2E-07 53.7 2.0 23 16-38 701-723 (986)
497 3hws_A ATP-dependent CLP prote 95.3 0.011 3.6E-07 46.5 3.1 24 14-37 51-74 (363)
498 3d8b_A Fidgetin-like protein 1 95.2 0.011 3.7E-07 46.4 3.0 24 14-37 117-140 (357)
499 2ocp_A DGK, deoxyguanosine kin 95.2 0.013 4.6E-07 43.1 3.3 22 15-36 3-24 (241)
500 3pxg_A Negative regulator of g 95.2 0.01 3.4E-07 48.4 2.7 23 15-37 202-224 (468)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.7e-41 Score=247.39 Aligned_cols=206 Identities=34% Similarity=0.580 Sum_probs=142.8
Q ss_pred CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028329 1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT 79 (210)
Q Consensus 1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (210)
|.++... .+..+.+||+|+|++|||||||+++|+.+.|...+ +|.+.++....+..++..+.+.||||+|++.+..++
T Consensus 1 ms~~~~~-~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~ 79 (216)
T 4dkx_A 1 MSTGGDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI 79 (216)
T ss_dssp -------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH
T ss_pred CCCCCCC-CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH
Confidence 4444433 23346699999999999999999999999987665 488888888888999999999999999999999999
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
..+++++|++++|||+++.++|+.+.. |+..+.... ..++|++|||||+|+...+.+..+++..++..+++.|++|||
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SA 157 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA 157 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeC
Confidence 999999999999999999999999998 777776543 457999999999999888899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++|.||+++|.+|++.+.+............ ......+++++++.+++||
T Consensus 158 ktg~nV~e~F~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~C~ 207 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAAALPGMESTQDRSREDM-IDIKLEKPQEQPVSEGGCS 207 (216)
T ss_dssp TTTBSHHHHHHHHHHHC----------------------------------
T ss_pred CCCcCHHHHHHHHHHHHHhhhcccccccccc-cccccCCCCCCCCCCCCCc
Confidence 9999999999999999876554433322221 2223344455556666774
No 2
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=222.56 Aligned_cols=178 Identities=34% Similarity=0.526 Sum_probs=147.4
Q ss_pred CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028329 1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT 79 (210)
Q Consensus 1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (210)
|.+......+....++|+|+|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+
T Consensus 1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence 44445555566778999999999999999999999888766555 444433 4567788888999999999999999999
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
..++..+|++++|||+++..++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 158 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence 999999999999999999999999887 7777776665668999999999999777777888889999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 028329 160 KTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+++.|++++|++|.+.+.+..
T Consensus 159 ~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcc
Confidence 999999999999999997653
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.8e-35 Score=217.65 Aligned_cols=171 Identities=51% Similarity=0.846 Sum_probs=151.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.+..++|+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 467899999999999999999999998876544 4777778778888899999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++.++..+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 85 ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999888 877776543 4578999999999998777778888889999999999999999999999999
Q ss_pred HHHHHHHHcCCCcc
Q 028329 170 EELVLKILDTPSLL 183 (210)
Q Consensus 170 ~~l~~~~~~~~~~~ 183 (210)
.+|.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 163 LTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998765443
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=218.05 Aligned_cols=174 Identities=43% Similarity=0.735 Sum_probs=143.6
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
...+..++|+|+|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 34577899999999999999999999998886554 47777777777888998899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++|+|||++++.++..+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 88 ~vilV~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNH-WLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHH-HHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 887776643 45789999999999977667777888899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccc
Q 028329 168 CFEELVLKILDTPSLLA 184 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~ 184 (210)
+|++|.+.+.+......
T Consensus 166 l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 166 AFEELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999987765543
No 5
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=204.54 Aligned_cols=167 Identities=29% Similarity=0.429 Sum_probs=136.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccchhhcccCccEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLTSSYYRGAQGI 89 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~ 89 (210)
...+||+++|++|||||||+++|++..+...+++.+.++....+.+++..+.+.+||+||... +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999998877777777787777788899999999999999887 566677788999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999987 77766654445579999999999998777777888888888899999999999999999999
Q ss_pred HHHHHHHHcC
Q 028329 170 EELVLKILDT 179 (210)
Q Consensus 170 ~~l~~~~~~~ 179 (210)
++|.+.+.++
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 6
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=6.3e-34 Score=206.27 Aligned_cols=169 Identities=33% Similarity=0.513 Sum_probs=143.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||+++|.++.+...++....+.....+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999998877666544445556667789999999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||++++.++..+.. |...+.......+.|+++|+||+|+. .+....+.+..++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999888 77777766666789999999999996 4456667788899999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028329 172 LVLKILDTPSL 182 (210)
Q Consensus 172 l~~~~~~~~~~ 182 (210)
|.+.+.+....
T Consensus 160 l~~~~~~~~~~ 170 (189)
T 4dsu_A 160 LVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99999766543
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=204.68 Aligned_cols=172 Identities=53% Similarity=0.894 Sum_probs=152.5
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
...+..+||+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 44467899999999999999999999998876554 47777888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 91 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999988 888776643 45789999999999988888888889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028329 168 CFEELVLKILDTPSL 182 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~ 182 (210)
+|++|.+.+.++...
T Consensus 169 l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 169 SFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876543
No 8
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.5e-33 Score=202.35 Aligned_cols=167 Identities=34% Similarity=0.507 Sum_probs=148.1
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....+||+++|++|||||||+++|++..+...+. +.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 34568999999999999999999999888766555 555444 6667889999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC-CCCCHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQ 167 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~ 167 (210)
+++|||++++.+++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+ ++.|+++
T Consensus 93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 999999999999999988 77777665666789999999999998888888899999999999999999999 9999999
Q ss_pred HHHHHHHHHHc
Q 028329 168 CFEELVLKILD 178 (210)
Q Consensus 168 ~~~~l~~~~~~ 178 (210)
+|++|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 9
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3.6e-34 Score=210.68 Aligned_cols=169 Identities=36% Similarity=0.635 Sum_probs=142.9
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....++|+++|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4567999999999999999999999988765444 777778788888888889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEEccCCCCCH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVNV 165 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i 165 (210)
|+|||++++.++..+.. |+..+..... ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999999877 7776655432 1468999999999997 44556667777777 56788999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 028329 166 QQCFEELVLKILDTPS 181 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~~ 181 (210)
+++|++|.+.+.+...
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 163 EQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987553
No 10
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.3e-33 Score=202.25 Aligned_cols=169 Identities=29% Similarity=0.428 Sum_probs=146.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....++|+++|++|||||||+++|+++.+...+. +.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 3467999999999999999999999888765554 666655 66678899999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++++++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 99999999999999988 77777665666689999999999998888888999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028329 170 EELVLKILDTPS 181 (210)
Q Consensus 170 ~~l~~~~~~~~~ 181 (210)
+++.+.+.+...
T Consensus 161 ~~l~~~~~~~~~ 172 (181)
T 3t5g_A 161 RRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHhcC
Confidence 999999987664
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.8e-33 Score=202.64 Aligned_cols=171 Identities=47% Similarity=0.827 Sum_probs=149.8
Q ss_pred cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028329 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85 (210)
Q Consensus 7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (210)
.....+..++|+++|++|||||||+++|++..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..++..
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 3445567899999999999999999999998876544 477777877778888889999999999999999999999999
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 165 (210)
+|++++|||++++.+++.+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999887 777776643 457899999999999776777778889999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028329 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
+++|++|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=207.64 Aligned_cols=171 Identities=41% Similarity=0.775 Sum_probs=143.2
Q ss_pred ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
+++.+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 355567899999999999999999999988876544 4666677777788888889999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNV 165 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i 165 (210)
|++++|||++++.+++.+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...++ +++++||+++.|+
T Consensus 103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 99999999999999999887 877776643 46799999999999987677788888999999999 8999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028329 166 QQCFEELVLKILDTP 180 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~ 180 (210)
+++|++|.+.+.++.
T Consensus 181 ~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 181 EEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987643
No 13
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.9e-33 Score=202.82 Aligned_cols=174 Identities=29% Similarity=0.547 Sum_probs=146.5
Q ss_pred cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY 83 (210)
Q Consensus 5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (210)
..........+||+++|++|||||||+++|+++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..++
T Consensus 14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 92 (194)
T 3reg_A 14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92 (194)
T ss_dssp -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence 3334455678999999999999999999999988765544 6655554 4577889999999999999999999999999
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhCCc-EEEEccC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE--RVVTKKEGINFAREYGCL-FIECSAK 160 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~ 160 (210)
+++|++++|||++++.++..+...|...+... ..++|+++|+||+|+... +.+..+++..++...++. ++++||+
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 99999999999999999999866688888764 357999999999999653 667888899999999998 9999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 028329 161 TRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++.|++++|+++.+.+.+++.
T Consensus 171 ~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999987654
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.5e-33 Score=201.37 Aligned_cols=168 Identities=51% Similarity=0.855 Sum_probs=147.6
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+.+..++|+++|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 345678999999999999999999999988765554 7777787888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEeCcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 777776543 35789999999999977677778888999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 028329 168 CFEELVLKILD 178 (210)
Q Consensus 168 ~~~~l~~~~~~ 178 (210)
+|+++.+.+.+
T Consensus 168 l~~~l~~~i~~ 178 (179)
T 1z0f_A 168 AFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999998854
No 15
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-33 Score=202.91 Aligned_cols=174 Identities=61% Similarity=0.961 Sum_probs=151.3
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 3346799999999999999999999998876444 477788888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.......++|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++
T Consensus 91 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 999999999999999887 88887765555689999999999994 4456677788899999999999999999999999
Q ss_pred HHHHHHHHHcCCCcccc
Q 028329 169 FEELVLKILDTPSLLAE 185 (210)
Q Consensus 169 ~~~l~~~~~~~~~~~~~ 185 (210)
|++|.+.+.+.......
T Consensus 169 ~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 169 FEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHhhhhhhcc
Confidence 99999999877655443
No 16
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=8.8e-34 Score=201.54 Aligned_cols=164 Identities=30% Similarity=0.405 Sum_probs=122.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.+||+++|++|||||||+++|.+.......++.+.++ ...+.+++..+.+.+||++|+..+...+..++..+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 4799999999999999999999877665556666655 455688999999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|++++++++.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999999999988 666666544556899999999999988888888888999999999999999999999999999999
Q ss_pred HHHHcC
Q 028329 174 LKILDT 179 (210)
Q Consensus 174 ~~~~~~ 179 (210)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988654
No 17
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-33 Score=204.81 Aligned_cols=169 Identities=42% Similarity=0.806 Sum_probs=148.6
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+.+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34467899999999999999999999988876544 47777888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 101 ~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPE-WLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 888776643 45789999999999977667778888888888999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028329 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|.+|.+.+.+.
T Consensus 179 l~~~l~~~i~~~ 190 (201)
T 2ew1_A 179 LFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 18
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-33 Score=198.97 Aligned_cols=170 Identities=44% Similarity=0.824 Sum_probs=140.1
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
+..+..++|+++|++|||||||+++|++..+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 344678999999999999999999999988742 334777777777778899899999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
|++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 162 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999887 777776643 3678999999999998777778888888999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028329 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.++.
T Consensus 163 ~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 163 LAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 19
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=206.59 Aligned_cols=167 Identities=29% Similarity=0.437 Sum_probs=138.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|||||||+++|.++.+...+. +.+.++ ...+..++..+.+.+||+||+..+...+..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 456999999999999999999999988765443 444333 344567888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
+|||++++.++..+.. |+..+..... ..++|+++|+||+|+.. +.+..+++..++..++++++++||+++.|++++|
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 9999999999999887 6555554322 24689999999999964 4456677788888899999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028329 170 EELVLKILDTPS 181 (210)
Q Consensus 170 ~~l~~~~~~~~~ 181 (210)
++|.+.+.++..
T Consensus 163 ~~l~~~~~~~~~ 174 (199)
T 2gf0_A 163 QELLTLETRRNM 174 (199)
T ss_dssp HHHHHHCSSSCE
T ss_pred HHHHHHHhhhhc
Confidence 999998866543
No 20
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-33 Score=208.89 Aligned_cols=168 Identities=30% Similarity=0.593 Sum_probs=140.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 467999999999999999999999888765544 555443 445677888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--------ecHHHHHHHHHHhCC-cEEEEccCC
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--------VTKKEGINFAREYGC-LFIECSAKT 161 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa~~ 161 (210)
+|||+++++++..+...|+..+.... .++|++||+||+|+...+. +..+++..++...++ +++++||++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 99999999999999855888887653 4799999999999965543 367778888888886 899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCc
Q 028329 162 RVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~~ 182 (210)
+.|++++|++|.+.+.+....
T Consensus 164 g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999876543
No 21
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=5.1e-33 Score=202.32 Aligned_cols=170 Identities=49% Similarity=0.845 Sum_probs=147.3
Q ss_pred ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
.......+||+++|++|||||||+++|+++.+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 3445678999999999999999999999988765544 667777777788899999999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
|++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999888 777776543 4579999999999997766777888899999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028329 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=7.2e-33 Score=199.46 Aligned_cols=169 Identities=39% Similarity=0.658 Sum_probs=146.4
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 44567899999999999999999999998876654 47777787788888888999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 9999999999999999887 777776543 35799999999999987777788888999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028329 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|++|.+.+.+.
T Consensus 165 l~~~l~~~~~~~ 176 (181)
T 2efe_B 165 IFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhc
Confidence 999999877554
No 23
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3e-33 Score=199.32 Aligned_cols=165 Identities=27% Similarity=0.369 Sum_probs=132.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQGIIM 91 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~ 91 (210)
.+||+++|++|||||||+++|++..+..... +.+.+.....+.+++..+.+.+||++|+..+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999776654433 555666777778899999999999999988876 66777888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||+++++++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 999999999999988 6666666555568999999999999877888888999999999999999999999999999999
Q ss_pred HHHHHHcC
Q 028329 172 LVLKILDT 179 (210)
Q Consensus 172 l~~~~~~~ 179 (210)
+.+.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988765
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=198.44 Aligned_cols=168 Identities=50% Similarity=0.861 Sum_probs=147.4
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
..+..+||+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 4567899999999999999999999988876444 477778888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999887 77777654 357999999999999877778888889999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028329 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|++|.+.+.+..
T Consensus 162 ~~~l~~~~~~~~ 173 (181)
T 3tw8_B 162 FNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.8e-33 Score=197.74 Aligned_cols=164 Identities=40% Similarity=0.692 Sum_probs=144.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999988876654 47788887888888999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 84 VVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999887 777666532 45799999999999976667777888899999999999999999999999999
Q ss_pred HHHHHHH
Q 028329 171 ELVLKIL 177 (210)
Q Consensus 171 ~l~~~~~ 177 (210)
+|.+.+.
T Consensus 162 ~i~~~~~ 168 (170)
T 1r2q_A 162 AIAKKLP 168 (170)
T ss_dssp HHHHTSC
T ss_pred HHHHHHh
Confidence 9988764
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=5.5e-33 Score=198.04 Aligned_cols=166 Identities=37% Similarity=0.717 Sum_probs=139.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 356799999999999999999999988876544 4777777777788888899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999887 777776543 3468999999999997777777888899999999999999999999999999
Q ss_pred HHHHHHHHc
Q 028329 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
++|.+.+.+
T Consensus 161 ~~l~~~~~~ 169 (170)
T 1z08_A 161 LDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998865
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.6e-33 Score=196.63 Aligned_cols=164 Identities=35% Similarity=0.566 Sum_probs=140.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..++|+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999888765554 444433 4556788888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||+++++++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 999999999999987 7777776665668999999999999776677788889999999999999999999999999999
Q ss_pred HHHHHHc
Q 028329 172 LVLKILD 178 (210)
Q Consensus 172 l~~~~~~ 178 (210)
+.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998864
No 28
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=6.6e-33 Score=200.71 Aligned_cols=165 Identities=18% Similarity=0.334 Sum_probs=140.2
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
......+||+++|++|||||||+++|+++.+...+.+.+..+ ...+.+++..+.+.+||++|++.+. +++.+|+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 445678999999999999999999999998876555333333 4677889999999999999987766 6778999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--CCCceecHHHHHHHHHHhC-CcEEEEccCCCCCH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVTKKEGINFAREYG-CLFIECSAKTRVNV 165 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i 165 (210)
+++|||++++.+++.+.. |+..+.......++|+++|+||+|+ ...+.+..+++..++...+ ++++++||+++.|+
T Consensus 89 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 999999999999999988 8888876554467999999999999 3456678888999999987 89999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028329 166 QQCFEELVLKILDTP 180 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~ 180 (210)
+++|+++.+.+.+.+
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 29
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=203.34 Aligned_cols=170 Identities=27% Similarity=0.366 Sum_probs=141.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~ 88 (210)
....+||+++|++|||||||+++|++.... ...++.+.+.....+.+++..+.+.+||++|...+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 356799999999999999999999765432 2234445555566678899999999999999987765 67778889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 999999999999999988 7777766544467999999999999877778888889999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028329 169 FEELVLKILDTPS 181 (210)
Q Consensus 169 ~~~l~~~~~~~~~ 181 (210)
|+++.+.+.+...
T Consensus 179 f~~l~~~i~~~~~ 191 (195)
T 3cbq_A 179 FEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999876543
No 30
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5e-33 Score=205.21 Aligned_cols=169 Identities=26% Similarity=0.364 Sum_probs=137.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGA 86 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~ 86 (210)
.....+||+++|++|||||||+++|++... ...+++.+.++....+.+++..+.+.+||++|... +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 345679999999999999999999996543 44445566666667778899999999999999776 445666778899
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
|++++|||+++..+|+.+.. |...+.......++|++||+||+|+...+.+..+++..++...+++++++||++|.|++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999987 76666543334579999999999997666777778888888899999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028329 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|++|.+.+..+
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
No 31
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.2e-33 Score=201.85 Aligned_cols=167 Identities=48% Similarity=0.899 Sum_probs=119.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.+..++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 457899999999999999999999988765433 3667677777788888899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999887 877776542 3578999999999998777778888899999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028329 170 EELVLKILDT 179 (210)
Q Consensus 170 ~~l~~~~~~~ 179 (210)
.+|.+.+.++
T Consensus 163 ~~l~~~i~~~ 172 (183)
T 2fu5_C 163 FTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 32
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.4e-32 Score=198.82 Aligned_cols=169 Identities=47% Similarity=0.811 Sum_probs=148.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
..+..++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 3467899999999999999999999998876544 477777877888889988999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 86 ALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 999999999999999887 777776533 357999999999999766677778888999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028329 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|+++.+.+.++.
T Consensus 164 ~~~l~~~~~~~~ 175 (186)
T 2bme_A 164 FVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 33
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=200.90 Aligned_cols=168 Identities=48% Similarity=0.850 Sum_probs=148.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
..+..+||+++|++|||||||+++|++..+...+ ++.+.++....+..++..+.+.+||+||...+...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 3457899999999999999999999998876544 477778887888889999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 84 ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 999999999999998887 777776543 457899999999999877777888889999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028329 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
|++|.+.+.++
T Consensus 162 ~~~l~~~i~~~ 172 (203)
T 1zbd_A 162 FERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 34
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=205.65 Aligned_cols=171 Identities=29% Similarity=0.433 Sum_probs=140.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||.+.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 33568999999999999999999999998876554 555554 5556667778899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 999999999999999987 7777766555668999999999999877888888899999999999999999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028329 169 FEELVLKILDTPSL 182 (210)
Q Consensus 169 ~~~l~~~~~~~~~~ 182 (210)
|++|.+.+.+....
T Consensus 178 ~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 178 FTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999876543
No 35
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-33 Score=202.62 Aligned_cols=171 Identities=37% Similarity=0.668 Sum_probs=146.6
Q ss_pred cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028329 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85 (210)
Q Consensus 7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (210)
+.+..+..+||+++|++|||||||+++|++..+.. ..++.+.++....+.+++....+.+||+||+..+...+..++..
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 33455678999999999999999999999988754 44588888888888888889999999999999999999999999
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 165 (210)
+|++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI 173 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred CCEEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 999999999999999999977 877776643 457899999999999766677788889999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028329 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
+++|++|.+.+.+.
T Consensus 174 ~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 174 EELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877543
No 36
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=200.06 Aligned_cols=169 Identities=41% Similarity=0.732 Sum_probs=148.2
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
++.+..++|+|+|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||...+...+..++..+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 344678999999999999999999999988875554 7777887788888899999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVER-WLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 777776532 45789999999999977666777888889989999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028329 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|++|.+.+.++
T Consensus 178 l~~~l~~~i~~~ 189 (193)
T 2oil_A 178 AFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=203.10 Aligned_cols=172 Identities=49% Similarity=0.859 Sum_probs=142.4
Q ss_pred ccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028329 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84 (210)
Q Consensus 6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (210)
....+.+..++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++
T Consensus 18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 33455678899999999999999999999988876543 47777888888888998999999999999999999999999
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~ 163 (210)
.+|++++|||+++..+++.+.. |+..+... ...++|++||+||+|+...+.+..+++..++... +++++++||+++.
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred CCCEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 9999999999999999999877 87777654 3457999999999999776777777888888774 7889999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028329 164 NVQQCFEELVLKILDT 179 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (210)
|++++|++|.+.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 38
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=6.4e-33 Score=205.41 Aligned_cols=172 Identities=24% Similarity=0.471 Sum_probs=141.7
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|||||||+++|+++.+...+. +.+.++ ...+.+++..+.+.+||++|++.+...+..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 344567999999999999999999999998876654 666555 455677888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cE
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LF 154 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 154 (210)
++|+|||+++++++..+...|+..+... ..++|++||+||+|+... +.+..+++..++...++ ++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 9999999999999999545588888775 357999999999999653 56788889999999999 89
Q ss_pred EEEccCCCCC-HHHHHHHHHHHHHcCCCcc
Q 028329 155 IECSAKTRVN-VQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 155 ~~~sa~~~~~-i~~~~~~l~~~~~~~~~~~ 183 (210)
++|||+++.| ++++|+++.+.+.+.....
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 9999999998 9999999999998766543
No 39
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=6.9e-33 Score=201.23 Aligned_cols=168 Identities=37% Similarity=0.638 Sum_probs=143.5
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCcc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQ 87 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d 87 (210)
.....+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||.+.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 3356799999999999999999999988876544 477777777888889989999999999999888 78888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC---CC
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR---VN 164 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~ 164 (210)
++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++ .|
T Consensus 96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 9999999999999999988 8887777665678999999999999777777788888999999999999999999 99
Q ss_pred HHHHHHHHHHHHHc
Q 028329 165 VQQCFEELVLKILD 178 (210)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (210)
++++|.+|.+.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 175 VEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887743
No 40
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=9.1e-33 Score=196.44 Aligned_cols=164 Identities=33% Similarity=0.587 Sum_probs=144.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+..+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988876544 47777777778888888999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||++++.++..+.. |+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999888 777776544 5789999999999976666777888899999999999999999999999999
Q ss_pred HHHHHHHc
Q 028329 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
+|.+.+.+
T Consensus 160 ~l~~~~~~ 167 (168)
T 1z2a_A 160 YLAEKHLQ 167 (168)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998865
No 41
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1e-32 Score=196.05 Aligned_cols=163 Identities=40% Similarity=0.637 Sum_probs=140.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988765554 555444 4556778888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~ 170 (210)
|||++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++... +.+++++||++|.|++++|+
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999999888 7776666555678999999999999777777788888888887 78999999999999999999
Q ss_pred HHHHHHH
Q 028329 171 ELVLKIL 177 (210)
Q Consensus 171 ~l~~~~~ 177 (210)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.2e-32 Score=198.20 Aligned_cols=169 Identities=33% Similarity=0.507 Sum_probs=145.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....++|+++|++|||||||+++|++..+...+. +.+..+. ..+.+++..+.+.+||+||+..+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 44567999999999999999999999988766555 5555544 557788888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 999999999999999987 6666644445667999999999999777777788888898899999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028329 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|++|.+.+.+..
T Consensus 163 ~~~l~~~~~~~~ 174 (181)
T 2fn4_A 163 FEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.3e-32 Score=198.80 Aligned_cols=170 Identities=35% Similarity=0.697 Sum_probs=147.1
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeE-EEEEEECCe---------EEEEEEEeCCCcccccc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFK-VKYVDVGGK---------KLKLAIWDTAGQERFRT 77 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~ 77 (210)
.+.+..++|+++|++|||||||+++|+++.+...+ ++.+.++. ...+..++. .+.+.+||+||+..+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 45678899999999999999999999988875443 46676666 555666665 78999999999999999
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.+..+++.+|++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999887 88877766555689999999999997766777788889999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028329 158 SAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
||+++.|++++|++|.+.+.++
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998654
No 44
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=203.71 Aligned_cols=168 Identities=46% Similarity=0.773 Sum_probs=139.9
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+.+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 3467899999999999999999999988876544 466777777778888989999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 101 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999887 777776533 367999999999999776777778888999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028329 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
|++|.+.+.++
T Consensus 179 ~~~l~~~i~~~ 189 (200)
T 2o52_A 179 FLKCARTILNK 189 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-32 Score=195.78 Aligned_cols=163 Identities=45% Similarity=0.723 Sum_probs=142.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..++|+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4689999999999999999999988876544 577888877888889999999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC---ceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE---RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
|+|++++.++..+.. |+..+.... ..++|+++|+||+|+... +.+..+++..++...+++++++||+++.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999888 777776543 457999999999999654 566777888888889999999999999999999
Q ss_pred HHHHHHHHH
Q 028329 169 FEELVLKIL 177 (210)
Q Consensus 169 ~~~l~~~~~ 177 (210)
|++|.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987653
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=8e-33 Score=200.03 Aligned_cols=169 Identities=35% Similarity=0.530 Sum_probs=144.4
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|||||||+++|++..+...+. +.+.. ....+.+++..+.+.+||+||+..+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 334567999999999999999999999888766555 44433 3455677888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999988 777777666666899999999999977667778888999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028329 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3e-32 Score=194.10 Aligned_cols=164 Identities=37% Similarity=0.674 Sum_probs=145.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.+.++|+++|++|||||||+++|.+..+... .++.+.++....+.+.+....+.+||+||.+.+...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999887544 458888888888888999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||++++.++..+.. |+..+... .....|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 84 IVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 9999999999999877 87777663 346789999999999977677777888888889999999999999999999999
Q ss_pred HHHHHHH
Q 028329 171 ELVLKIL 177 (210)
Q Consensus 171 ~l~~~~~ 177 (210)
+|.+.+.
T Consensus 162 ~i~~~i~ 168 (170)
T 1z0j_A 162 EISRRIP 168 (170)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9998764
No 48
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4e-32 Score=197.92 Aligned_cols=167 Identities=30% Similarity=0.571 Sum_probs=142.7
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+....++|+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 344678999999999999999999999988765544 554443 445677888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cE
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LF 154 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 154 (210)
++++|||+++++++..+...|+..+... ..++|+++|+||+|+... +.+..+++..++...++ ++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 9999999999999999985588888764 347899999999999653 35677888899999998 89
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHc
Q 028329 155 IECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 155 ~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+++||+++.|++++|++|.+.++.
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998864
No 49
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-34 Score=206.49 Aligned_cols=169 Identities=50% Similarity=0.841 Sum_probs=149.5
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+.+..+||+|+|++|||||||+++|++..+...+. +.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34567999999999999999999999888765443 66777777888888888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQD-WATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999988 888887643 457999999999999877788888899999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028329 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|++|.+.+.++.
T Consensus 177 ~~~l~~~i~~~~ 188 (191)
T 3dz8_A 177 FERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999987643
No 50
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=199.84 Aligned_cols=164 Identities=30% Similarity=0.451 Sum_probs=138.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||++|++.+... ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 567999999999999999999999988765544 666554 445677888999999999999888775 56889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc-CCCCCHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA-KTRVNVQQ 167 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~ 167 (210)
+|||++++++++.+.. |+..+..... ..++|+++|+||+|+...+.+..+++..++...+++++++|| +++.|+++
T Consensus 97 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 9999999999999987 7777766432 257899999999999777778888899999999999999999 89999999
Q ss_pred HHHHHHHHHHc
Q 028329 168 CFEELVLKILD 178 (210)
Q Consensus 168 ~~~~l~~~~~~ 178 (210)
+|++|.+.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.2e-32 Score=195.50 Aligned_cols=165 Identities=35% Similarity=0.560 Sum_probs=141.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..++|+++|++|||||||+++|.++.+...+.....+.....+.+++....+.+||+||+..+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 35899999999999999999999888766555333344466678888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||++++.+++.+.. |...+.......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 99999999999888 66666555555689999999999997777777888888999999999999999999999999999
Q ss_pred HHHHHc
Q 028329 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988754
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.1e-32 Score=193.28 Aligned_cols=167 Identities=40% Similarity=0.700 Sum_probs=142.8
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 456799999999999999999999988875443 4777777778888899899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEEccCCCCCH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVNV 165 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i 165 (210)
++|||++++.++..+.. |...+..... ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|+
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999999877 7777765433 2678999999999996 45566777888887 55788999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028329 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
+++|+++.+.+.+.
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 53
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.6e-32 Score=194.42 Aligned_cols=164 Identities=54% Similarity=0.854 Sum_probs=139.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999988875443 466767777778888888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||++++.++..+.. |+..+.... ..+.|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|.+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999998877 777776543 357899999999999 44556677788888899999999999999999999999
Q ss_pred HHHHHHcC
Q 028329 172 LVLKILDT 179 (210)
Q Consensus 172 l~~~~~~~ 179 (210)
|.+.+.++
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998765
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=201.98 Aligned_cols=167 Identities=37% Similarity=0.663 Sum_probs=136.6
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 3456799999999999999999999998875443 477778878888889999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 162 (210)
+++|||++++.++..+.. |+..+.... ..++|++||+||+|+. ..+.+..+++..++...+++++++||+++
T Consensus 104 iilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181 (199)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 999999999999999887 887776542 3478999999999985 44567778888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028329 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
.|++++|.+|.+.+.+
T Consensus 182 ~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 182 SNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998864
No 55
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.2e-32 Score=197.73 Aligned_cols=169 Identities=33% Similarity=0.550 Sum_probs=143.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
....++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 346799999999999999999999988875433 3666667777777776 67899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCI-KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
+++|||++++.+++.+.. |+..+..... ..+.| +++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 999999999999998876 7777765432 12344 89999999997766777788889999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028329 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|++|.+.+.+..
T Consensus 162 ~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 162 LCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987654
No 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=199.96 Aligned_cols=166 Identities=31% Similarity=0.479 Sum_probs=143.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||... ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 457999999999999999999999988766554 544433 45567888899999999999887 777888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC-CHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCF 169 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~ 169 (210)
+|||++++++++.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++. |++++|
T Consensus 104 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 104 LVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 9999999999999987 77777765556789999999999997767778888899999999999999999999 999999
Q ss_pred HHHHHHHHcCC
Q 028329 170 EELVLKILDTP 180 (210)
Q Consensus 170 ~~l~~~~~~~~ 180 (210)
++|.+.+.+++
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999987643
No 57
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.4e-32 Score=195.37 Aligned_cols=166 Identities=39% Similarity=0.648 Sum_probs=144.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 346699999999999999999999988876554 4777777778888899999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 91 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSK-WIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999887 777666533 3578999999999997777777888888899999999999999999999999
Q ss_pred HHHHHHHHc
Q 028329 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
++|.+.+.+
T Consensus 169 ~~l~~~~~~ 177 (179)
T 2y8e_A 169 RRVAAALPG 177 (179)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHhh
Confidence 999887643
No 58
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.3e-31 Score=193.22 Aligned_cols=167 Identities=34% Similarity=0.518 Sum_probs=132.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....++|+++|++|||||||+++|+++.+...+. +.+ +.....+..++..+.+.+||+||...+...+..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 3467999999999999999999999888765554 443 33345677788889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||+++..++..+.. |+..+.......++|+++|+||+|+.. +....+++..++...+++++++||+++.|++++|
T Consensus 97 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 97 LCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999998877 877777666556799999999999865 4566778888999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 028329 170 EELVLKILDTP 180 (210)
Q Consensus 170 ~~l~~~~~~~~ 180 (210)
++|.+.+.+.+
T Consensus 175 ~~l~~~~~~~~ 185 (190)
T 3con_A 175 YTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 59
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=6.1e-32 Score=197.99 Aligned_cols=168 Identities=28% Similarity=0.468 Sum_probs=135.5
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....++|+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34567999999999999999999999888765444 544333 4556778888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEE
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFI 155 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~ 155 (210)
+++|||++++.++..+...|+..+.... .++|+++|+||+|+.. .+.+..+++..++...++ +++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 9999999999999999755888877643 4799999999999964 245677788888888887 899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 156 ECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++||+++.|++++|++|.+.+.+..
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999887543
No 60
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=6.2e-32 Score=200.05 Aligned_cols=166 Identities=32% Similarity=0.576 Sum_probs=123.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|+++.+...+. +.+ +.....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 457999999999999999999999888765544 443 334555778888999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+.... .++|+++|+||+|+.... .+..+++..++...++ +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999755888887643 578999999999996543 5666778888888897 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028329 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
||+++.|++++|++|.+.+.+.+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998664
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.3e-31 Score=193.53 Aligned_cols=166 Identities=30% Similarity=0.523 Sum_probs=141.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|||||||+++|+++.+...+. +.+.. ....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 357999999999999999999999888765554 44433 3455678889999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 99999999999999855888877643 37899999999998553 45667778888888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028329 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
||++|.|++++|+++.+.+.+..
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999987654
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.8e-32 Score=202.14 Aligned_cols=169 Identities=37% Similarity=0.698 Sum_probs=144.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe----------EEEEEEEeCCCccccccch
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK----------KLKLAIWDTAGQERFRTLT 79 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~ 79 (210)
.++.+||+|+|++|||||||+++|++..+...+. +.+.++....+.+++. .+.+.+||+||+..+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 4678999999999999999999999887754333 5565666666666655 7899999999999999999
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
..++..+|++++|||+++..++..+.. |+..+.......++|++||+||+|+...+.+..+++..++...+++++++||
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 999999999999999999999998887 7777665443467999999999999776677788889999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 028329 160 KTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+++.|++++|++|.+.+.++.
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999987643
No 63
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.2e-31 Score=192.65 Aligned_cols=162 Identities=23% Similarity=0.331 Sum_probs=134.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||+++|+++.+..+.++.+.. ....+.+++..+.+.+||++|++. ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 45799999999999999999999999887755566544 356677888899999999999875 456778999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~ 166 (210)
|||+++++++..+.. |+..+..... ..++|+++|+||+|+. ..+.+..+++..++... +++++++||+++.|++
T Consensus 79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999988 6666554332 2578999999999993 45567778888888876 6899999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028329 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.+..
T Consensus 158 ~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 158 RVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=7.5e-32 Score=195.02 Aligned_cols=165 Identities=27% Similarity=0.537 Sum_probs=139.5
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 3567999999999999999999999988865543 555544 34567788889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CcEEE
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIE 156 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
++|||++++.++..+...|...+.... .+.|+++|+||+|+... +.+..+++..++...+ +++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 999999999999998555888877643 57899999999999642 4567788889998887 68999
Q ss_pred EccC-CCCCHHHHHHHHHHHHHc
Q 028329 157 CSAK-TRVNVQQCFEELVLKILD 178 (210)
Q Consensus 157 ~sa~-~~~~i~~~~~~l~~~~~~ 178 (210)
+||+ ++.|++++|+++.+.+++
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999998875
No 65
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3.6e-31 Score=187.52 Aligned_cols=162 Identities=34% Similarity=0.571 Sum_probs=139.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.++|+++|++|||||||+++|.+..+...+. +.+ +.....+..++..+.+.+||+||+..+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999888765554 443 33355567788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||+++..++..+.. |...+.......++|+++|+||+|+.. +....+++..++...+++++++||+++.|++++|+++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999877 777777665556799999999999865 4456677888888899999999999999999999999
Q ss_pred HHHHHc
Q 028329 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=197.95 Aligned_cols=168 Identities=53% Similarity=0.854 Sum_probs=142.4
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34456799999999999999999999988875443 47777777777888998899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++..++...+++++++||+++.|+++
T Consensus 95 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 777776543 347899999999999 4455667778888888999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028329 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|++|.+.+.+.
T Consensus 172 l~~~l~~~~~~~ 183 (213)
T 3cph_A 172 IFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=4.4e-31 Score=193.64 Aligned_cols=164 Identities=32% Similarity=0.586 Sum_probs=140.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|.++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 467999999999999999999999988765554 5554443 34677888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+.... .++|+++|+||+|+... +.+..+++..++...+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 99999999999999655888887643 47899999999999655 34667788888888888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHc
Q 028329 158 SAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~ 178 (210)
||+++.|++++|++|.+.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.8e-31 Score=194.51 Aligned_cols=163 Identities=36% Similarity=0.627 Sum_probs=139.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeE-----------------------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK----------------------------- 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------------------- 61 (210)
+..++|+++|++|||||||+++|++..+...+. +.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999988765444 67767777667766655
Q ss_pred --------EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 62 --------LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 62 --------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
..+.+||+||+..+...+..+++.+|++++|||++++.++..+.. |+..+.... +.|+++|+||+| .
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D-~ 159 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID-K 159 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-C
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-c
Confidence 899999999999999999999999999999999999999998887 777776543 399999999999 5
Q ss_pred CCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
..+.+..+++..++...+++++++||+++.|++++|++|.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5566777888999999999999999999999999999999988653
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=197.28 Aligned_cols=165 Identities=27% Similarity=0.535 Sum_probs=139.5
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 3567999999999999999999999988865544 555554 44567788889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CcEEE
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYG-CLFIE 156 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
++|||++++.++..+...|...+.... .++|+++|+||+|+.. .+.+..+++..++...+ +++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998555888887643 5799999999999964 24567788889998887 68999
Q ss_pred EccC-CCCCHHHHHHHHHHHHHc
Q 028329 157 CSAK-TRVNVQQCFEELVLKILD 178 (210)
Q Consensus 157 ~sa~-~~~~i~~~~~~l~~~~~~ 178 (210)
+||+ ++.|++++|+++.+.+++
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999998875
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1e-31 Score=199.27 Aligned_cols=177 Identities=30% Similarity=0.452 Sum_probs=144.8
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.....+||+++|++|||||||+++|+++.+...+ ++.+.+.....+... +..+.+.+||+||+..+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 4456799999999999999999999988876544 366666665555443 44489999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||+++..++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLAR-WVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 9999999999999999987 877776643 34689999999999987777888888888888899999999999999999
Q ss_pred HHHHHHHHHHcCCCccccccc
Q 028329 168 CFEELVLKILDTPSLLAEGSK 188 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~~~~~ 188 (210)
+|++|.+.+.+..........
T Consensus 165 l~~~l~~~~~~~~~~~~~~~~ 185 (218)
T 4djt_A 165 PFLHLARIFTGRPDLIFVSNV 185 (218)
T ss_dssp HHHHHHHHHHCCTTCCBCSCC
T ss_pred HHHHHHHHHhccccccccccc
Confidence 999999999988877654333
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=9.3e-32 Score=193.60 Aligned_cols=168 Identities=36% Similarity=0.637 Sum_probs=129.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
....++|+++|++|||||||+++|++..+...+ ++.+.++....+.++ +....+.+||+||+..+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 456799999999999999999999998876544 366677777777766 567899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCC-ceecHHHHHHHHH-HhCCcEEEEccCCCC
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESE-RVVTKKEGINFAR-EYGCLFIECSAKTRV 163 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~sa~~~~ 163 (210)
+++|||++++.+++.+.. |+..+..... ..++|+++|+||+|+... +.+..+++..++. ..+.+++++||+++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 999999999999999887 7776655432 267899999999999533 4456777788877 456789999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028329 164 NVQQCFEELVLKILDT 179 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (210)
|++++|++|.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-31 Score=190.34 Aligned_cols=164 Identities=29% Similarity=0.433 Sum_probs=135.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..++|+++|++|||||||+++|+++.+...+. +.+.++ ...+..++..+.+.+||+||+..+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 36899999999999999999999888754443 444443 3445678888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
|||++++.+++.+.. |+..+.... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|+
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 999999999998887 555554432 235789999999999977667777788888888999999999999999999999
Q ss_pred HHHHHHHc
Q 028329 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
+|.+.+.+
T Consensus 160 ~l~~~~~~ 167 (172)
T 2erx_A 160 ELLNLEKR 167 (172)
T ss_dssp HHHHTCCS
T ss_pred HHHHHHhh
Confidence 99987643
No 73
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=3.5e-31 Score=192.90 Aligned_cols=168 Identities=26% Similarity=0.363 Sum_probs=134.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCccE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGAQG 88 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~ 88 (210)
...+||+++|++|||||||+++|++.. +...+++.+.++....+.+++..+.+.+||++|... +...+..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 356999999999999999999999643 334444566666667778899999999999999766 45566677888999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++|||+++.++|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999987 6666655433457899999999999766667777778888888899999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028329 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|+++.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999885443
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=7.6e-31 Score=193.21 Aligned_cols=166 Identities=32% Similarity=0.555 Sum_probs=138.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|+++.+...+. +.+..+. ..+..++..+.+.+||+||+..+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 467999999999999999999999988866554 4444443 34677888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+... ..++|+++|+||+|+... +.+..+++..++...++ +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999965588887764 357899999999999654 34666778888888888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028329 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
||+++.|++++|++|.+.+.+..
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987654
No 75
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=2.5e-31 Score=195.41 Aligned_cols=163 Identities=28% Similarity=0.514 Sum_probs=136.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||+++|+.+.+...+...........+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45799999999999999999999988886655533334445567778889999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHhCC-cEEEEc
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VTKKEGINFAREYGC-LFIECS 158 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~s 158 (210)
|||++++.+++.+...|...+.... .++|+++|+||+|+..... +..+++..++...++ +++++|
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 9999999999999855888887754 6799999999999965433 667788888888886 599999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028329 159 AKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~~ 176 (210)
|++|.|++++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.98 E-value=8.4e-32 Score=197.98 Aligned_cols=168 Identities=24% Similarity=0.358 Sum_probs=110.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEECCe--EEEEEEEeCCCccccccchhhcccCc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVGGK--KLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
...++|+++|++|||||||+++|++. .+...+ ++.+.++....+.+++. .+.+.+||+||+..+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999988 665443 36666677777777777 89999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCC-CceecHHHHHHHHHHhCCcEEEEccCC-C
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKES-ERVVTKKEGINFAREYGCLFIECSAKT-R 162 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~ 162 (210)
|++++|||++++.++..+.. |+..+..... ..++|+++|+||+|+.. .+.+..+++..++...+++++++||++ +
T Consensus 98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 99999999999999999987 8888876543 25799999999999977 677778889999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 028329 163 VNVQQCFEELVLKILDTP 180 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~ 180 (210)
.|++++|++|.+.+.+..
T Consensus 177 ~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 177 KDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ---CHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999886543
No 77
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.8e-31 Score=188.68 Aligned_cols=162 Identities=22% Similarity=0.318 Sum_probs=126.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|+++.+....++.+... ..+.++ ...+.+||+||+..+...+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 346999999999999999999999988876666666443 334444 5779999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~ 166 (210)
|||++++.++..... |+..+.......++|+++|+||+|+..... ..+.... +...+++++++||+++.|++
T Consensus 81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 81 VVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999999887 444443323336799999999999965432 1222221 22335679999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028329 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.+++
T Consensus 158 ~l~~~l~~~i~~~q 171 (171)
T 1upt_A 158 EAMEWLVETLKSRQ 171 (171)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999987653
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=5.6e-32 Score=194.94 Aligned_cols=164 Identities=32% Similarity=0.607 Sum_probs=126.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 456999999999999999999999888755443 4443332 22445666788899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce----------ecHHHHHHHHHHhCC-cEEEEcc
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV----------VTKKEGINFAREYGC-LFIECSA 159 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa 159 (210)
+|||++++.+++.+...|...+.... .++|+++|+||+|+...+. +..+++..++...++ +++++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999999855888887653 4799999999999865544 366778888888886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 028329 160 KTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (210)
+++.|++++|+++.+.+++
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998754
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.5e-31 Score=198.85 Aligned_cols=173 Identities=32% Similarity=0.556 Sum_probs=147.6
Q ss_pred cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028329 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85 (210)
Q Consensus 7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (210)
........+||+++|++|||||||+++|+.+.+.. ..++.+.++....+.+++..+.+.+||+||+..+...+..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34455678999999999999999999977666544 34588888888888899999999999999999999999999999
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 165 (210)
+|++++|||++++.++..+.. |+..+.... .++|+++|+||+|+....... +...++...+++++++||+++.|+
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHH-HHHHHHHHS--TTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTT
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999987 887777643 478999999999996544322 456677788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccc
Q 028329 166 QQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~ 184 (210)
+++|++|.+.+.+......
T Consensus 163 ~~l~~~l~~~l~~~~~~~~ 181 (221)
T 3gj0_A 163 EKPFLWLARKLIGDPNLEF 181 (221)
T ss_dssp THHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHhCccccc
Confidence 9999999999988876543
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=3.7e-31 Score=193.31 Aligned_cols=172 Identities=13% Similarity=0.225 Sum_probs=124.6
Q ss_pred cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028329 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY 82 (210)
Q Consensus 5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (210)
..+..+....++|+|+|++|||||||+++|+++.+... .++.+..... + ++..+.+.+||+||++.+...+..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHH
Confidence 34445667889999999999999999999999988763 4466644432 2 3456789999999999999999999
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc------CCCCcEEEEEeCCCCCCCcee---cHHHHHH-HHHHhCC
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST------NQDCIKLLVGNKVDKESERVV---TKKEGIN-FAREYGC 152 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------~~~~piivv~nK~D~~~~~~~---~~~~~~~-~~~~~~~ 152 (210)
++.+|++|+|||+++++++..+..++...+..... ..++|++||+||+|+...... ....... ++...++
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence 99999999999999999999998844444332111 137899999999999755321 1111111 1134567
Q ss_pred cEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 153 LFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 153 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+++++||+++.|++++|++|.+.+.+..
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999987653
No 81
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.5e-33 Score=203.87 Aligned_cols=167 Identities=54% Similarity=0.916 Sum_probs=136.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.+..+||+++|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 4578999999999999999999999888765443 667777778888899999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 110 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp EECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999988 88777653 23479999999999998777777677788888899999999999999999999
Q ss_pred HHHHHHHHcC
Q 028329 170 EELVLKILDT 179 (210)
Q Consensus 170 ~~l~~~~~~~ 179 (210)
++|.+.+.++
T Consensus 188 ~~l~~~l~~~ 197 (199)
T 3l0i_B 188 MTMAAEIKKR 197 (199)
T ss_dssp HHHTTTTTTT
T ss_pred HHHHHHHHHh
Confidence 9998877543
No 82
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2e-31 Score=194.37 Aligned_cols=167 Identities=21% Similarity=0.215 Sum_probs=132.7
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEE-EECCeEEEEEEEeCCCccccc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYV-DVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~ 76 (210)
...+..+||+++|++|||||||++.+.+...... .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456789999999999999999987765433221 1234444433333 556778999999999999999
Q ss_pred cchhhcccCccEEEEEEeCC------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q 028329 77 TLTSSYYRGAQGIIMVYDVT------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY 150 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~ 150 (210)
..+..+++++|++++|||++ +.+++..+.. |+..+. ....++|+++|+||+|+... +..+++..++...
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~--~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYG--LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE 163 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTT--CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhc--cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence 99999999999999999999 4456666655 665553 23467999999999998654 6777888899889
Q ss_pred CC-cEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 151 GC-LFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 151 ~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++ +++++||+++.|++++|++|.+.+.++.
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 99 9999999999999999999999987654
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.8e-31 Score=189.17 Aligned_cols=157 Identities=22% Similarity=0.384 Sum_probs=121.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++|+++.+....++.+.. ...+.. ....+.+||+||+..+...+..++.++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988887665665533 223333 45789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
+++++++..+.. |+..+.......+.|+++|+||+|+.... ..++..... ...+++++++||+++.|++++|
T Consensus 77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999887 55555433344679999999999996542 222222211 1134569999999999999999
Q ss_pred HHHHHHHHc
Q 028329 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999988754
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=3.8e-30 Score=187.11 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=125.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|.++.+..+.++.+.+ ...+.+++ ..+.+||+||+..++..+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999998887666666654 34455565 789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEEEEcc
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA 159 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 159 (210)
|||+++++++..+.. |+..+.......++|+++|+||+|+.. ....+++...+.. .+++++++||
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999988 555554433446799999999999975 3445555554432 3457999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028329 160 KTRVNVQQCFEELVLK 175 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~ 175 (210)
+++.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.6e-30 Score=190.21 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=119.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|.++.+....++.+.+. ..+.+++ ..+.+||+||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 356899999999999999999999888766556666543 3445555 789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------hCCcE
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----------------YGCLF 154 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 154 (210)
|||+++++++..+.. |+..+.......++|+++|+||+|+.. .+..+++..++.. .++++
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999988 555554433346799999999999975 4556666665542 23569
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 028329 155 IECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 155 ~~~sa~~~~~i~~~~~~l~~~ 175 (210)
++|||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.6e-29 Score=182.85 Aligned_cols=161 Identities=23% Similarity=0.361 Sum_probs=126.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|+++......++.+.+. ..+.++ ...+.+||+||+..+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999999888444445666443 334444 4789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 166 (210)
|+|++++.++..+.. |+..+.......++|+++|+||+|+..... .++...... ..+++++++||+++.|++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999888 555444333446799999999999965432 233332221 235679999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028329 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=6.2e-31 Score=191.57 Aligned_cols=160 Identities=23% Similarity=0.365 Sum_probs=118.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|+++.+....++.+. ....+.. ..+.+.+||+||.+.+...+..++.++|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE--EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCce--eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999998887654444442 2233333 34789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 166 (210)
|||+++++++..+.. |+..+.......++|+++|+||+|+.... ..+++.... ...+++++++||+++.|++
T Consensus 103 v~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 103 VVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 999999999999887 55554433334579999999999996542 222222211 1124569999999999999
Q ss_pred HHHHHHHHHHHc
Q 028329 167 QCFEELVLKILD 178 (210)
Q Consensus 167 ~~~~~l~~~~~~ 178 (210)
++|++|.+.+.+
T Consensus 180 ~l~~~l~~~i~~ 191 (192)
T 2b6h_A 180 DGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.5e-30 Score=187.69 Aligned_cols=161 Identities=22% Similarity=0.329 Sum_probs=123.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|||||||+++|+++.+... .++.+.++.. +. ...+.+.+||+||+..+...+..++..+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 4679999999999999999999998887643 3466655543 22 24578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNV 165 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 165 (210)
+|||+++.+++..+.. |+..+.......++|+++|+||+|+.... ..++...... ..+++++++||+++.|+
T Consensus 96 ~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 96 YMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 9999999999999988 54444332334679999999999996542 2222222111 23456899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028329 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
+++|++|.+.+.++
T Consensus 173 ~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 173 DITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877543
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=7.5e-31 Score=189.38 Aligned_cols=161 Identities=25% Similarity=0.339 Sum_probs=122.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|.+..+....++.+.+ ...+.++ .+.+.+||+||+..+...+..++..+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45799999999999999999999988665444555543 3334444 4679999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 166 (210)
|||+++++++..+.. |+..+.......+.|+++|+||+|+..... .+++.... ...+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999887 555443323346789999999999975432 22222221 1224579999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028329 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+++.+.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.1e-30 Score=189.51 Aligned_cols=162 Identities=21% Similarity=0.307 Sum_probs=126.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|+.+.+....++.+... ..+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 467999999999999999999999888766556665333 334444 4789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~ 166 (210)
|+|+++++++..... |+..+.......+.|+++|+||+|+..... .++.... +...+++++++||+++.|++
T Consensus 96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 999999999999887 444443333345799999999999965432 1222221 12234579999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028329 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.+++
T Consensus 173 ~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 173 EGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987654
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=4.8e-30 Score=185.01 Aligned_cols=160 Identities=23% Similarity=0.335 Sum_probs=122.1
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
......++|+++|++|||||||+++|+++.+....++.+.+.. .+.+++ ..+.+||+||++.+...+..++.++|+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 3345679999999999999999999999888555556665443 334444 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCC
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRV 163 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~ 163 (210)
+++|||+++.+++..+.. |+..+.......++|+++|+||+|+... ...+++.... ...+++++++||+++.
T Consensus 92 ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 92 VIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999999999988 4444433233467999999999999653 2233333332 1234579999999999
Q ss_pred CHHHHHHHHHHH
Q 028329 164 NVQQCFEELVLK 175 (210)
Q Consensus 164 ~i~~~~~~l~~~ 175 (210)
|++++|++|.+.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.3e-29 Score=182.33 Aligned_cols=163 Identities=22% Similarity=0.328 Sum_probs=123.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|+++.+....++.+.+.. .+.+++ ..+.+||+||++.+...+..++.++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4579999999999999999999998887654456554433 334443 789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 166 (210)
|+|+++++++..+.. |+..+.......+.|+++|+||+|+... ...+++..... ..+++++++||+++.|++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 999999999999988 6555554333467999999999999653 23333333332 235679999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028329 167 QCFEELVLKILDTPS 181 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~ 181 (210)
++|++|.+.+.+...
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998866554
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=182.67 Aligned_cols=161 Identities=22% Similarity=0.283 Sum_probs=123.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCC-CCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
....++|+++|++|||||||+++|++.. +.. ..++.+ +....+.+++ ..+.+||+||++.+...+..++.++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3467999999999999999999999887 333 333555 3344445443 689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCC
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKT 161 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~ 161 (210)
+++|||++++.++..+.. |+..+...... .++|+++|+||+|+... ...+++..... ..+++++++||++
T Consensus 94 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 999999999999999888 55544432222 57899999999999653 33444454442 2356799999999
Q ss_pred CCCHHHHHHHHHHHHHc
Q 028329 162 RVNVQQCFEELVLKILD 178 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (210)
+.|++++|++|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999987743
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=1.6e-28 Score=179.62 Aligned_cols=166 Identities=45% Similarity=0.772 Sum_probs=142.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+..++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999998876544 46677777777888999999999999999998888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|+|+++..++..+.. |+..+... ...+.|+++++||+|+...+....+++..++...++.++++|++++.+++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 83 LVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999988877 76666543 235689999999999977666777788889999999999999999999999999
Q ss_pred HHHHHHHcC
Q 028329 171 ELVLKILDT 179 (210)
Q Consensus 171 ~l~~~~~~~ 179 (210)
+|.+.+.+.
T Consensus 161 ~l~~~~~~~ 169 (199)
T 2f9l_A 161 NILTEIYRI 169 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.7e-28 Score=192.66 Aligned_cols=165 Identities=28% Similarity=0.513 Sum_probs=140.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|||||||+++|+++.+...+. +.+.. ....+.+++..+.+.+||+||.+.+...+..++..+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 346999999999999999999999888765555 44433 3555678889999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+.... .++|+++|+||+|+... +.+..+++..++...++ +++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 99999999999998855888887643 37999999999998543 45677888899999997 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028329 158 SAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
||+++.|++++|++|.+.+++.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999988754
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=4.7e-30 Score=185.08 Aligned_cols=161 Identities=23% Similarity=0.339 Sum_probs=123.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|+++.+....++.+... ..+.+++ ..+.+||+||...+...+..++..+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 567999999999999999999999887755555666433 3344443 789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 166 (210)
|+|++++.++..+.. |+..+.......+.|+++|+||+|+... ...+++...... .+++++++||+++.|++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 999999999999888 5555544333567999999999999653 223333333221 23469999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028329 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=9.5e-30 Score=185.79 Aligned_cols=167 Identities=21% Similarity=0.210 Sum_probs=118.8
Q ss_pred ccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccch---hh
Q 028329 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLT---SS 81 (210)
Q Consensus 6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~---~~ 81 (210)
....+....+||+++|++|||||||++++.+............+.......+ ++..+.+.+||++|++.+.... ..
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 3445566789999999999999999998886433321112222222333333 3566889999999999987766 78
Q ss_pred cccCccEEEEEEeCCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------CceecHHHHHHHHH----
Q 028329 82 YYRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------ERVVTKKEGINFAR---- 148 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------~~~~~~~~~~~~~~---- 148 (210)
+++++|++|+|||+++. +++..+.. |+..+.. ...++|++||+||+|+.. .+.+..++...++.
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 89999999999999997 45555544 4444432 245899999999999854 23445555667777
Q ss_pred HhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 149 EYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 149 ~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
..+++++++||++ .|++++|..+++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6678899999999 99999999998865
No 98
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=5.5e-28 Score=175.79 Aligned_cols=166 Identities=46% Similarity=0.794 Sum_probs=143.0
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+.+..++|+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||++|...+...+..+++.++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 34567899999999999999999999998876544 47787888888889999999999999999988888888899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|+|.++..+++.+.. |...+... ...+.|+++++||.|+...+.....++..++...++.++++|++++.++++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999888776 66655542 235689999999999976666777788889999999999999999999999
Q ss_pred HHHHHHHHH
Q 028329 168 CFEELVLKI 176 (210)
Q Consensus 168 ~~~~l~~~~ 176 (210)
+|++|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.7e-31 Score=196.17 Aligned_cols=162 Identities=29% Similarity=0.521 Sum_probs=133.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|+++.+...+. +.+. .....+.+++..+.+.+||+||+..+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 467999999999999999999999887755444 4333 33444566777888999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+.... .++|+++|+||+|+.... .+..+++..++...++ +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 99999999999998755877776533 378999999999996543 4555667777888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~ 176 (210)
||+++.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=6.3e-29 Score=179.70 Aligned_cols=164 Identities=21% Similarity=0.365 Sum_probs=120.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC--CCCC-CCCCceeeeEEEEEEE---CCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD--NFEE-LSPTIGVDFKVKYVDV---GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~--~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+||+++|++|||||||+++|++. .+.. +.++.+.++....+.+ ++..+.+.+||++|.+.+...+..+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 3333 2346666655444433 345678999999999999988888899999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCc----EEEEcc
Q 028329 88 GIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---KKEGINFAREYGCL----FIECSA 159 (210)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa 159 (210)
++++|||++++ .++..+.. |+..+... ..+.|+++|+||+|+...+... .+....++...+++ ++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 99999999997 47888876 77776553 2478999999999997554332 23344555556776 999999
Q ss_pred CCCC-CHHHHHHHHHHHHHcCC
Q 028329 160 KTRV-NVQQCFEELVLKILDTP 180 (210)
Q Consensus 160 ~~~~-~i~~~~~~l~~~~~~~~ 180 (210)
+++. +++++++.+.+.+.+.+
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC-
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 9997 99999999999886643
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=7.5e-28 Score=177.91 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=117.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-chhhcccCccEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRT-LTSSYYRGAQGI 89 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~ 89 (210)
...+||+++|++|||||||+++|+++.+...+++....+.. +.+++. .+.+.+||+||+..+.. .+..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 45699999999999999999999998887766654444433 555544 68899999999999887 788889999999
Q ss_pred EEEEeCCCcc-cHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHH-----------------
Q 028329 90 IMVYDVTRRD-TFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVT--KKEGINFAR----------------- 148 (210)
Q Consensus 90 i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~----------------- 148 (210)
++|||+++.. ++.....+|...+... ....++|+++|+||+|+....... .+.......
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999854 4666666566665442 234578999999999996543221 111111111
Q ss_pred ----------------Hh--CCcEEEEccCCC------CCHHHHHHHHHHH
Q 028329 149 ----------------EY--GCLFIECSAKTR------VNVQQCFEELVLK 175 (210)
Q Consensus 149 ----------------~~--~~~~~~~sa~~~------~~i~~~~~~l~~~ 175 (210)
.+ +++|++|||++| .|++++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.6e-29 Score=193.83 Aligned_cols=160 Identities=21% Similarity=0.355 Sum_probs=119.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..+||+|+|++|||||||+++|.++.+....++.+..+. .+. ...+.+.||||||++.+...+..+++.+|++|+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 568999999999999999999998887554444443332 222 3457899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 167 (210)
||+++..++..+..+|...+.. ....++|++||+||+|+..... .+++..... ..+++++++||+++.|+++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 9999999999998855555544 3345799999999999975432 222222221 1245699999999999999
Q ss_pred HHHHHHHHHHcC
Q 028329 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|++|.+.+.++
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=6.5e-28 Score=199.08 Aligned_cols=163 Identities=23% Similarity=0.358 Sum_probs=125.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|.+|||||||+++|+++.+....+|.+.++.. +. ...+.+.+|||+|+..+...+..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE--EE--SSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE--EE--eCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45799999999999999999999999877666677655543 22 345789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 166 (210)
|||+++++++..+..+|...+. .....++|++||+||+|+.... ...+...... ..+++++++||++|.|++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIIN-DREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHT-SGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECcchhHHHHHHHHHHHHhh-hhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999884444443 3344679999999999996532 2222222111 123459999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028329 167 QCFEELVLKILDTPS 181 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~ 181 (210)
++|++|.+.+.+...
T Consensus 473 ~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999998755543
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=186.10 Aligned_cols=166 Identities=23% Similarity=0.287 Sum_probs=118.9
Q ss_pred cccceEEEEEEEcCC---------CCcHHHHHHHHhcC---CCCCCC-CCc-eeeeEEEE--------------EEECCe
Q 028329 9 QEFDYLFKLLMIGDS---------GVGKSSLLLSFTSD---NFEELS-PTI-GVDFKVKY--------------VDVGGK 60 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~---------~~GKTtli~~l~~~---~~~~~~-~~~-~~~~~~~~--------------~~~~~~ 60 (210)
......+||+++|++ |||||||+++|+++ .+...+ ++. +.++.... ..+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 344567999999999 99999999999984 443322 222 22221111 124567
Q ss_pred EEEEEEEe-----------------------CCCccccccchhhccc---------------------CccEEEEEEeCC
Q 028329 61 KLKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDVT 96 (210)
Q Consensus 61 ~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 96 (210)
.+.+.+|| ++|++.+...+..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 5566666666666666 799999999999
Q ss_pred Cc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEEccCCCCCHHHHHHHHH
Q 028329 97 RR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 97 ~~--~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
++ .+++.+.. |+..+.......++|++||+||+|+...+.+ +++..++.. .+++++++||+++.|++++|++|.
T Consensus 174 ~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 174 RGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp C----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 98 99999887 7777765433457999999999999655443 466677765 478999999999999999999999
Q ss_pred HHHH
Q 028329 174 LKIL 177 (210)
Q Consensus 174 ~~~~ 177 (210)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8774
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=8.3e-27 Score=174.08 Aligned_cols=165 Identities=18% Similarity=0.059 Sum_probs=113.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSS 81 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~ 81 (210)
...++|+++|++|||||||+++|++..+... .+....+.....+... ...+.+||+||.... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4579999999999999999999998876421 1111222222222333 367999999998321 112233
Q ss_pred cccCccEEEEEEeCCCcccHHHHH-HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhC--CcEE
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLS-DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYG--CLFI 155 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~ 155 (210)
++..+|++++|||++++.++.... ..|+..+... ..++|+++|+||+|+...+.+..+ ....++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 467889999999999988875221 1244444331 247899999999999766555443 4455666666 7899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 156 ECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++||+++.|++++|++|.+.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 106
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=1.5e-26 Score=179.91 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=132.8
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc----------c
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR----------T 77 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~----------~ 77 (210)
.+....-.|+++|.+|||||||+|+|++..+....+.++++........... ...+.+|||||..... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4456678999999999999999999999988766665555554443333333 5789999999985543 4
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEE
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFI 155 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 155 (210)
.+...+..+|++++|+|+++..++..... |...+.. .++|+++|+||+|+.............+....+ .+++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 55667889999999999999888877655 6676664 468999999999997444455555666767665 6799
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCCccccc
Q 028329 156 ECSAKTRVNVQQCFEELVLKILDTPSLLAEG 186 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 186 (210)
++||+++.|++++|+++.+.+.+....+..+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence 9999999999999999999997776655443
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=3.4e-26 Score=163.97 Aligned_cols=159 Identities=21% Similarity=0.231 Sum_probs=116.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++. .+.+||+||+..+...+...+..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 356789999999999999999999988775433 34444444444555654 577999999999999998999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-------C--CcEEEEccC
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-------G--CLFIECSAK 160 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~sa~ 160 (210)
++|+|+++........ ++..+. ..++|+++|+||+|+.... .++........ + ++++++||+
T Consensus 83 i~v~d~~~~~~~~~~~--~l~~~~----~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVE--AINHAK----AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEEETTCCCCHHHHH--HHHHHG----GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEEECCCCCcHHHHH--HHHHHH----hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 9999998854333222 122222 3468999999999996532 22222222221 2 579999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 028329 161 TRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~ 180 (210)
++.|++++|++|.+.+...+
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhhhhhc
Confidence 99999999999999886654
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=1.1e-26 Score=180.58 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=127.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC----CCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL----SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-----RTLTSSYY 83 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~ 83 (210)
..+||+++|++|||||||+++|+++..... .+|.+.... .+.+++ .+.+.+||+||+..+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 358999999999999999999998743322 224443333 333444 688999999999888 67788889
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC---Cc
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES--ERV----VTKKEGINFAREYG---CL 153 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~ 153 (210)
+++|++++|||+++.++++.+.. |...+... ....++|+++|+||+|+.. .+. ...+++..++..++ ++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 99999999999999999998876 55544332 1245799999999999976 443 55577888888887 68
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028329 154 FIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++++||++ .++.++|..+++.+....+
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li~~~~ 184 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLIPNMS 184 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred EEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence 99999999 8999999998887655443
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=1e-26 Score=169.17 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=111.5
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRT 77 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 77 (210)
.+....++|+++|++|||||||+++|++..+. ...++++.+........++ .+.+||+|| ...+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence 34457899999999999999999999988743 3444666666555555544 589999999 566666
Q ss_pred chhhcccCc---cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHH-HHHHhC
Q 028329 78 LTSSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGIN-FAREYG 151 (210)
Q Consensus 78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~-~~~~~~ 151 (210)
.+..++..+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+...+.... +++.. +....+
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence 676776666 9999999999988776643 2333332 5689999999999976544322 22222 222235
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 152 CLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 152 ~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
.+++++||+++.|++++|++|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999998764
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=1.4e-26 Score=164.46 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=109.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR-- 84 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~-- 84 (210)
.++|+++|++|||||||+++|++..+.. ..++.+.+.....+.+++ ..+.+|||||...+.. ....++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 4899999999999999999999876532 223323333344445554 5799999999877642 2344443
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 164 (210)
.+|++++|+|+++.++ ... |...+.. .++|+++|+||+|+...+.+.. ++..++..++++++++||++|.|
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred CCCEEEEEecCCchhH---hHH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence 7999999999987543 333 5555443 3689999999999854333332 35677778899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028329 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
++++|+++.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=3.7e-27 Score=170.73 Aligned_cols=159 Identities=22% Similarity=0.268 Sum_probs=117.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhcc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG-----------QERFRTLTSSYY 83 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~~ 83 (210)
+||+++|++|||||||+++|++..+...+ .++.+.....+... .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK-RPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSS-STTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCC-CCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999988765332 23333444444444 589999999 556666676777
Q ss_pred cC-ccEEEEEEeCCCcccHHHHHHHHHHH--------HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-
Q 028329 84 RG-AQGIIMVYDVTRRDTFTNLSDVWAKE--------IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL- 153 (210)
Q Consensus 84 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 153 (210)
.. ++++++++++.+..++..+...|... +.......++|+++|+||+|+.... .++...++..++++
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCG
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhh
Confidence 76 77777777777777887775546542 2222334579999999999997654 45667777777764
Q ss_pred ------EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028329 154 ------FIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ------~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++++||++|.|++++|+++.+.+.+.+.
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999999876553
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=5e-27 Score=165.62 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=106.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRG 85 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 85 (210)
+||+++|++|||||||+++|.+..+....+ ....+.....+..++. .+.+||+||... +...+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999887543333 3333344444555554 688999999876 34455667889
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCC
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 164 (210)
+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.... +++..++ ..++ +++++||+++.|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 999999999998655432 213333332 468999999999996542 2233344 5677 799999999999
Q ss_pred HHHHHHHHHHHH
Q 028329 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=3.3e-28 Score=188.09 Aligned_cols=169 Identities=20% Similarity=0.221 Sum_probs=125.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC----CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEE----LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQG 88 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~ 88 (210)
||+++|++|||||||++++.++.++. ..+|.+.++.. ++ ..+.+.+|||+|++.+.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988665433 23455555542 22 347899999999999964 35788999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHHH----hCCcEEE
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE-------RVVTKKEGINFARE----YGCLFIE 156 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~ 156 (210)
+|+|||+++. +.....+|...+... ...+++|+++++||+|+... +.+..+++..++.. .++.|++
T Consensus 76 ~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 76 LVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999997 334444354444321 12457999999999999754 34556666666664 5788999
Q ss_pred EccCCCCCHHHHHHHHHHHHHcCCCcccccccCccc
Q 028329 157 CSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK 192 (210)
Q Consensus 157 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (210)
|||++ .++.+.|..+.+.+..+.+.++.....+..
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~~~ 188 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNLIQ 188 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGGGC
T ss_pred eccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998 589999999999988777776665555443
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=1.2e-25 Score=163.26 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=116.9
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRTLT 79 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 79 (210)
+....++|+++|++|||||||+++|++.......++.+.+........+. .+.+||+|| ...+...+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 34566899999999999999999999988666666666666555444443 478999999 55566666
Q ss_pred hhcccCc---cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHHhC-Cc
Q 028329 80 SSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKKEGINFAREYG-CL 153 (210)
Q Consensus 80 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~-~~ 153 (210)
..++..+ |++++|+|+++..+..... +...+.. .++|+++|+||+|+.... ....+++..++...+ ++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 6666554 9999999998765443331 2233332 268999999999986443 233345555555534 68
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 154 FIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 154 ~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
++++||+++.|++++|++|.+.+.+
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999988754
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=4.5e-26 Score=172.93 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=115.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch------hhcc--
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT------SSYY-- 83 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~-- 83 (210)
...++|+++|++|||||||+++|++..+. ....++.++......+......+.+||+||...+.+.+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 35699999999999999999999987653 11223444444443333334789999999987776532 4444
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 163 (210)
..+|++++|+|+++.++... |...+.. .++|+++|+||+|+...+.+.. +...++..++++++++||+++.
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLY----LLLEILE----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHH----HHHHHHT----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred cCCCEEEEEeCCCchhhHHH----HHHHHHh----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence 58999999999998765432 3333332 3689999999999854433332 3577788889999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028329 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++|+++.+.+..
T Consensus 153 gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 153 GLEELKEKIVEYAQK 167 (258)
T ss_dssp THHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998753
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=3.7e-26 Score=163.44 Aligned_cols=152 Identities=22% Similarity=0.181 Sum_probs=109.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYY 83 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~ 83 (210)
.++|+++|++|||||||+++|++...... ++..+.++....+.+++. .+.+||+||...+... ....+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 47999999999999999999998765322 233333344555666664 4789999997643211 12347
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 163 (210)
+.+|++++|||+++..++.. .. |+..+.... ..++|+++|+||+|+...... ++...+.+++++||+++.
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~-~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AE-IWPEFIARL-PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HH-HCHHHHHHS-CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCT
T ss_pred HhCCEEEEEEECCCCCCHHH-HH-HHHHHHHhc-ccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCCC
Confidence 89999999999999888763 33 656555432 346899999999998432211 111246789999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028329 164 NVQQCFEELVLKIL 177 (210)
Q Consensus 164 ~i~~~~~~l~~~~~ 177 (210)
|++++|++|.+.+.
T Consensus 152 gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 152 GVDVLRNHLKQSMG 165 (172)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988763
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.3e-25 Score=162.51 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=115.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc-
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR- 84 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 84 (210)
..++|+++|++|||||||+++|++..+. ...++.+.+.....+..++ ..+.+||+||...+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 5699999999999999999999986542 2233333344444455544 678999999987764 23444553
Q ss_pred -CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329 85 -GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 163 (210)
.+|++++|+|.++ ++.... |...+.. .+.|+++|+||+|+...+.+. .+...++...+++++++||+++.
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLY-LTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCEEEEEecchh---HHHHHH-HHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 5899999999875 444444 5555543 468999999999985433333 34567778889999999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028329 164 NVQQCFEELVLKILDTP 180 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~ 180 (210)
|++++|+++.+.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999987665
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=5.3e-26 Score=189.04 Aligned_cols=165 Identities=22% Similarity=0.292 Sum_probs=124.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE------E--EECCeEEEEEEEeCCCccccccchhh
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY------V--DVGGKKLKLAIWDTAGQERFRTLTSS 81 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~------~--~~~~~~~~~~l~D~~g~~~~~~~~~~ 81 (210)
....+||+++|.+|||||||+++|++..+...+. +.+.++.... + ..++....+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4567999999999999999999999888754443 6665554331 1 12334678999999999999999999
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
+++.+|++++|+|+++. +.... |...+..+. .+.|+++|+||+|+...+.+..+++...+...+++++++||++
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HccCCcEEEEEEeCCCc---hhHHH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCc
Confidence 99999999999999765 34444 777777653 4689999999999987777778888888888899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q 028329 162 RVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~ 181 (210)
+.|++++|+++.+.+.+...
T Consensus 192 g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 192 GDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ---CTTHHHHHHHHHTCTTS
T ss_pred ccCHHHHHHHHHHHHhcccc
Confidence 99999999999999977654
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=6.8e-26 Score=172.92 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=115.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc--
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR-- 84 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-- 84 (210)
+.++|+++|++|||||||+++|++.... ....++.++......+.. ...+.+||+||...+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 3589999999999999999999986532 223445556555555665 6679999999987765 23445554
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 164 (210)
.+|++++|+|+++.++. .. |...+.. .++|+++|+||+|+...+.+. .+...++..++++++++||++|.|
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~-~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LY-LTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HH-HHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCEEEEEecCCchHhH---HH-HHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 69999999999886543 22 4444433 478999999999985433333 345677788899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028329 165 VQQCFEELVLKIL 177 (210)
Q Consensus 165 i~~~~~~l~~~~~ 177 (210)
++++|+++.+.+.
T Consensus 151 i~el~~~i~~~~~ 163 (272)
T 3b1v_A 151 VDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=2.4e-25 Score=165.34 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=114.0
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcc----------ccc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQE----------RFR 76 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~----------~~~ 76 (210)
.+....++|+++|.+|||||||+++|++.. .......++.+......... .....+.+|||||.. .+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 334567999999999999999999999887 33444455555554445544 445679999999942 334
Q ss_pred cchhhcccC---ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHH--
Q 028329 77 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFARE-- 149 (210)
Q Consensus 77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~-- 149 (210)
..+..++.. +|++++|+|+++..+.. ...|...+.. .++|+++|+||+|+....... .+........
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL--DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH--HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 444444444 88999999999864432 2225555543 468999999999986544321 1222233333
Q ss_pred -----hCCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 150 -----YGCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 150 -----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.+.+++++||+++.|++++|++|.+.+....
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4567999999999999999999999886544
No 121
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=7.4e-25 Score=169.56 Aligned_cols=167 Identities=19% Similarity=0.153 Sum_probs=115.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhcc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYY 83 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~ 83 (210)
.+..+|+++|++|||||||+|+|++..+....+.++++..............+.+|||||... +.......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 355789999999999999999999988765444333333322222223356899999999765 344556678
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 163 (210)
+.+|++++|+|+++..+... .++...+... ..++|+++|+||+|+........+.+..+ ....+++++||+++.
T Consensus 85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDER 158 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHH
T ss_pred hcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCC
Confidence 89999999999998755442 3234455542 24689999999999865433111222222 112468999999999
Q ss_pred CHHHHHHHHHHHHHcCCCccc
Q 028329 164 NVQQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~ 184 (210)
|++++|+++.+.+.+....++
T Consensus 159 gv~~l~~~l~~~l~~~~~~y~ 179 (301)
T 1wf3_A 159 QVAELKADLLALMPEGPFFYP 179 (301)
T ss_dssp HHHHHHHHHHTTCCBCCCSSC
T ss_pred CHHHHHHHHHHhcccCCCCCC
Confidence 999999999988766555443
No 122
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=2.6e-24 Score=175.53 Aligned_cols=156 Identities=17% Similarity=0.076 Sum_probs=99.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccccccch--------hhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRTLT--------SSY 82 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 82 (210)
..++|+++|.+|||||||+|+|++.......+.++++.. ...+.+++ ..+.+|||||...+...+ ...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 458999999999999999999998765444443444333 34445555 579999999987655433 336
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 162 (210)
+..+|++++|+|++++.++..... +...+... .++|+++|+||+|+........ ..+......+++++||+++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg 382 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALNG 382 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCC
Confidence 789999999999999988865433 44444432 2689999999999976654422 2233322368999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028329 163 VNVQQCFEELVLKIL 177 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~ 177 (210)
.|++++|++|.+.+.
T Consensus 383 ~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 383 DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BSHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999887
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=8.4e-25 Score=167.28 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=113.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--c
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--R 84 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~ 84 (210)
.++|+++|++|||||||+++|++..+.. ..+..+.+.....+...+ ..+.+||+||...+.. .+..++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 5899999999999999999999876521 222333334444444454 3589999999877665 344444 6
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 164 (210)
.+|++++|+|+++.+ .... |...+.. ...+|+++|+||+|+...+..... ...+...++++++++||+++.|
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLF-LTLELFE---MEVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHH-HHHHHHH---TTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBT
T ss_pred CCcEEEEEecCCcch---hhHH-HHHHHHh---cCCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCC
Confidence 899999999998853 2333 2222322 123899999999998543333322 5677788899999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 028329 165 VQQCFEELVLKILDTP 180 (210)
Q Consensus 165 i~~~~~~l~~~~~~~~ 180 (210)
++++|+++.+.+.+..
T Consensus 153 i~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 153 VEELKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999886554
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=9.5e-25 Score=165.38 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=109.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhcc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----------LTSSYY 83 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~ 83 (210)
.+|+++|.+|||||||+++|++.... ...+..+.+.....+..++. .+.+||+||...+.+ ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999987642 12233333344444555554 789999999876654 344555
Q ss_pred --cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 84 --RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
..+|++++|+|+++.++...+. ..+. ..++|+++|+||+|+...+.... ....+...++++++++||++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~ 150 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK 150 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence 7899999999999865544332 2232 24789999999999854332222 23456777899999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVLK 175 (210)
Q Consensus 162 ~~~i~~~~~~l~~~ 175 (210)
|.|++++|+++.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999887
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=2.2e-25 Score=170.58 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=109.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhc-
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----------TSSY- 82 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~- 82 (210)
.++|+++|++|||||||+|+|++..+. ....++.+.......+......+.+||+||...+... +..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEE-EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcc-cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 589999999999999999999987642 2223343333333333223346888999998766521 2222
Q ss_pred -ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 83 -YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
...+|++++|+|+++.++...+ ...+.. .++|+++|+||+|+...+.... ....+...++++++++||++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYL----TLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHH----HHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGG
T ss_pred hhcCCCEEEEEecCCChHHHHHH----HHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCC
Confidence 2689999999999986544333 333332 2689999999999854333222 24566778899999999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028329 162 RVNVQQCFEELVLKILDT 179 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (210)
|.|++++|+++.+.+.+.
T Consensus 153 g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GHHHHHHHHHHHTCCCCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999998876544
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.9e-24 Score=175.49 Aligned_cols=162 Identities=19% Similarity=0.123 Sum_probs=114.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCc----------cccccch
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQ----------ERFRTLT 79 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~ 79 (210)
+..++|+++|++|||||||+++|++.......+.++++. ....+..++. .+.+|||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 456999999999999999999999887643333333333 3334455554 4899999997 3333222
Q ss_pred h-hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-H----HhCCc
Q 028329 80 S-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-R----EYGCL 153 (210)
Q Consensus 80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~ 153 (210)
. ..++.+|++++|+|++++.++.... |...+.. .++|+++|+||+|+...+....++..... . ..+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence 2 3677899999999999998877653 5555543 46899999999999765544333332222 2 23678
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028329 154 FIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++++||++|.|++++|+.+.+.+.+...
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998876543
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.2e-24 Score=161.05 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=103.5
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A 86 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 86 (210)
....++|+++|++|||||||+++|++..+.........+. ........+.+||+||+..+...+..++.. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4567999999999999999999999887654221111111 111144578999999999998888888876 8
Q ss_pred cEEEEEEeCC-CcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCcEEE
Q 028329 87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVT------KKEGINFAREYGCLFIE 156 (210)
Q Consensus 87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~ 156 (210)
|++++|+|++ +.+++..... |+..+.... ...++|+++|+||+|+.....+. .++...++...++.+++
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 162 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE 162 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999 8889988888 444443322 23679999999999997665443 34556666677788999
Q ss_pred EccCCCCC
Q 028329 157 CSAKTRVN 164 (210)
Q Consensus 157 ~sa~~~~~ 164 (210)
+|++++.+
T Consensus 163 ~Sa~~~~~ 170 (218)
T 1nrj_B 163 VERKINEE 170 (218)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99998874
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=4.5e-24 Score=174.27 Aligned_cols=163 Identities=19% Similarity=0.146 Sum_probs=118.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAG----------QERFRTLT 79 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 79 (210)
...++|+++|.+|+|||||+++|++.......+.++++ .....+..++. .+.+||||| .+.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45799999999999999999999977643333323332 22344555554 789999999 45555443
Q ss_pred h-hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-----CCc
Q 028329 80 S-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-----GCL 153 (210)
Q Consensus 80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~ 153 (210)
. .+++.+|++++|+|+++..+... ..|...+.. .++|+++|+||+|+...+....+++...+... .++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 3 36788999999999998654322 225555543 46899999999999876666666666666655 578
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 154 FIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 154 ~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
++++||++|.|++++|+++.+.+.+....
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999988665544
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=4.9e-23 Score=159.53 Aligned_cols=165 Identities=19% Similarity=0.119 Sum_probs=112.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLTSSYY 83 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 83 (210)
+..+|+++|++|||||||+++|++.......+.++++.......+......+.+|||||.. .+.......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4568999999999999999999988764333333333222221222234678999999986 2334456678
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 162 (210)
..+|++++|+|+++ - ......+...+. ..+.|+++++||+|+........+....+...+++ .++++||+++
T Consensus 87 ~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 87 GDVELVIFVVEGTR-W--TPDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCEEEEEEEEETTC-C--CHHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred hcCCEEEEEEeCCC-C--CHHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 89999999999977 2 222222333332 35689999999999875322233344445555565 6999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccc
Q 028329 163 VNVQQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~~~ 184 (210)
.|++++++++...+.+....++
T Consensus 160 ~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp TTHHHHHHHHHTTCCBCCCSSC
T ss_pred CCHHHHHHHHHHhCCcCCCCCC
Confidence 9999999999988766554443
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.2e-22 Score=160.98 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=114.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSS 81 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~ 81 (210)
...++|+++|.+|||||||+++|++..... ..+..........+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876421 12211112222222223 35789999999744221 1123
Q ss_pred cccCccEEEEEEeCCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 82 YYRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
....+|++++|+|+++.. +++.... |+..+.... .+.|+++|+||+|+.....+ +++..++...+++++++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence 445699999999999876 6666666 666665532 27899999999999754432 4455666677889999999
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 028329 160 KTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (210)
++|.|++++|+++.+.+...
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999988554
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=1.1e-24 Score=175.02 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=111.8
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--eeEEEEEEECCeEEEEEEEeCCCccccccc-------h
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--DFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------T 79 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~ 79 (210)
.+....++|+++|++|+|||||+++|++..+.......++ +.....+.+.+. ..+.+|||||+..+... +
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 3455679999999999999999999998876443333333 333444555443 27899999998776544 3
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
..++..+|++++|+|++..+ .. ..|...+... ++|+++|+||+|+...... +....+...++++++++||
T Consensus 108 ~~~l~~aD~vllVvD~~~~~---~~-~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSA 177 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPTP---YE-DDVVNLFKEM----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSA 177 (423)
T ss_dssp HHHHTSCSEEEEECSSSCCH---HH-HHHHHHHHHT----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSS
T ss_pred HHHHhcCCEEEEEEeCCChH---HH-HHHHHHHHhc----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEEC
Confidence 44788899999999993322 22 2266666542 7899999999999765544 4455666667889999999
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 028329 160 KTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (210)
+++.|++++|++|.+.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999998554
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=5.1e-23 Score=167.30 Aligned_cols=153 Identities=24% Similarity=0.273 Sum_probs=102.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccc---------cccchhhcc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSYY 83 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 83 (210)
.+|+++|.||||||||+|+|++.......+.++.+. ....+.+++. .+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999999887654444455443 3344455554 578999999653 234556678
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHhCC-cEEEEccCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG-INFAREYGC-LFIECSAKT 161 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~ 161 (210)
+.+|++++|+|+++..+.... .+...++. .++|+++|+||+|+... . ..+. ..+ ..+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~-~~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRK----STVDTILVANKAENLRE--F-EREVKPEL-YSLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHH-GGGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHH-HhcCCCCEEEEeccC
Confidence 999999999999887654331 12233332 36899999999997532 1 1222 233 25676 689999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028329 162 RVNVQQCFEELVLKILDT 179 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (210)
|.|++++|+++.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999988754
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=3e-23 Score=169.41 Aligned_cols=151 Identities=20% Similarity=0.190 Sum_probs=110.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE-RFRT--------LTSSY 82 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~~ 82 (210)
.++|+++|.+|||||||+|+|++.......+ .++.+.....+.+++ ..+.+|||||.. .+.. .....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999876543333 233333444455555 468999999987 5432 23456
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 162 (210)
+..+|++++|+|++++.+++... ++..+ .++|+++|+||+|+... ...+++..++ ..+.+++++||+++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg 389 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKG 389 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCC
Confidence 78899999999999988876542 22332 36899999999999653 3334444432 23468999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028329 163 VNVQQCFEELVLKIL 177 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~ 177 (210)
.|++++|++|.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999765
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=2.2e-23 Score=169.33 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhcccCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSSYYRGA 86 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~ 86 (210)
++|+++|.+|||||||+++|++.......++++.+..............+.+|||||.. .+...+..++..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998877666677777766655665555679999999975 5566677788999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNV 165 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i 165 (210)
|++++|+|+++..+.... .+...+. ..++|+++|+||+|+....... ..+. .+++ +++++||++|.|+
T Consensus 84 d~il~vvD~~~~~~~~d~--~~~~~l~----~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADE--EVAKILY----RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp SEEEEEEETTTCSCHHHH--HHHHHHT----TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBTH
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCCh
Confidence 999999999987765432 1344443 3578999999999986432211 1111 3455 6899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028329 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
.++++++.+.+.+.
T Consensus 153 ~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 153 GDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999888643
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=9.6e-23 Score=159.90 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=114.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhcc---cCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----FRTLTSSYY---RGA 86 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~~ 86 (210)
.+|+|+|.+|||||||+++|++.... ..++..........+.+++ ...+.+||+||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999976532 2223111112222233333 24689999999533 333434443 459
Q ss_pred cEEEEEEeCCC---cccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccC
Q 028329 87 QGIIMVYDVTR---RDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAK 160 (210)
Q Consensus 87 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 160 (210)
|++|+|+|+++ .++++.+.. |...+..+.. ..++|+++|+||+|+.... +....+...+. .+++++||+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSC
T ss_pred cEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECC
Confidence 99999999998 778888876 7777776532 2578999999999986432 23455555555 679999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 028329 161 TRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++.|+++++.+|.+.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSCCC
T ss_pred CCcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999976554
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=150.08 Aligned_cols=166 Identities=11% Similarity=0.147 Sum_probs=106.2
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceee--eEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVD--FKVKYVDVGGKKLKLAIWDTAGQE-----------RF 75 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~-----------~~ 75 (210)
+....++|+++|++|||||||+++|++....... +..+.+ .....+..++ ..+.+|||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 3456799999999999999999999988764332 222232 3333344444 468999999943 33
Q ss_pred ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHh-hhccCCCCcEEEEEeCCCCCCCceec------HHHHHHHHH
Q 028329 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID-LYSTNQDCIKLLVGNKVDKESERVVT------KKEGINFAR 148 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~ 148 (210)
...+...+..+|++++|+|+++...... . |+..+. .+......|+++|+||+|+.....+. .+....+..
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~-~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEH--K-ATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHH--H-HHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHH--H-HHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 4444555678899999999986544221 1 222221 11112346899999999986544332 235677778
Q ss_pred HhCCcEEEEccCCC-----CCHHHHHHHHHHHHHcCC
Q 028329 149 EYGCLFIECSAKTR-----VNVQQCFEELVLKILDTP 180 (210)
Q Consensus 149 ~~~~~~~~~sa~~~-----~~i~~~~~~l~~~~~~~~ 180 (210)
..+..++.++...+ .++.++|..+.+.+.++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 88888888877644 689999999988886653
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=5.7e-22 Score=159.49 Aligned_cols=166 Identities=16% Similarity=0.092 Sum_probs=115.7
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE------------------E-EEECCeEEEEEEEeCCC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK------------------Y-VDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~l~D~~g 71 (210)
....++|+++|++++|||||+++|++............+.... . .........+.+||+||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 4567999999999999999999999754332111111111000 0 00012237899999999
Q ss_pred ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH
Q 028329 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFARE 149 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~ 149 (210)
+..+...+...+..+|++++|+|+++..++..... |+..+... ...|+++|+||+|+...... ..++...+...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876666666 55555442 22589999999999654322 11222232222
Q ss_pred h---CCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 150 Y---GCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 150 ~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
. +++++++||++|.|+++++++|.+.+....
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 2 567999999999999999999998775443
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=2.8e-22 Score=152.36 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=104.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--C-ceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--T-IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------- 78 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------- 78 (210)
+....++|+|+|++|||||||+++|++........ + ...+.........+ ..+.+|||||.......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34467999999999999999999999877433222 2 22223333334444 46899999997654322
Q ss_pred ---hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEe-CCCCCCCceecH-------HHHHHH
Q 028329 79 ---TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGN-KVDKESERVVTK-------KEGINF 146 (210)
Q Consensus 79 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piivv~n-K~D~~~~~~~~~-------~~~~~~ 146 (210)
....++.+|++++|+|+++.... ...+...+.... .....|.++++| |+|+.... ... .+...+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~---~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQ---DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHH---HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHH---HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence 22356889999999999863322 221223333221 112356666666 99997432 211 223445
Q ss_pred HHHhCCc---E--EEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 147 AREYGCL---F--IECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 147 ~~~~~~~---~--~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
....+.. + +++||+++.|++++|++|.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5555533 2 78999999999999999999998765
No 139
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.1e-21 Score=154.48 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=96.5
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 130 (210)
.+.+.+||++|++.++..|..++++++++|+|||+++ .+++..... |+..+.......++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence 5789999999999999999999999999999999999 466888877 55555443334679999999999
Q ss_pred CCCCCc---------------eecHHHHHHHHH-----------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 131 DKESER---------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 131 D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|+...+ ....+++..++. ..++.+++|||+++.||.++|+++.+.+.+.
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 984322 256677777776 2456799999999999999999999988653
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=1.2e-21 Score=163.47 Aligned_cols=159 Identities=23% Similarity=0.282 Sum_probs=111.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCC--CC---------CC---CCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDN--FE---------EL---SPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~--~~---------~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~ 73 (210)
...+|+++|+.++|||||+++|+... .. .. ....+.++......+ ++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998532 11 00 012333443222222 5567899999999999
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC- 152 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~- 152 (210)
.+...+...++.+|++|+|+|+++..+...... |..... .++|+++++||+|++... ..+....+...++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCC
Confidence 999999999999999999999999887777665 555443 368999999999997543 22223445555565
Q ss_pred --cEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 153 --LFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 153 --~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
+++++||++|.|++++++++.+.+...
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 389999999999999999999887544
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=8.6e-23 Score=166.05 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=102.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT--------SSY 82 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 82 (210)
..++|+++|++|||||||+|+|++........ ..+.++....+.+++ ..+.+|||||...+...+ ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 45899999999999999999999876543333 333333333445555 457999999976544332 235
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 162 (210)
+..+|++++|+|++++.+.... . |+..+. ..|+++|+||+|+....... ....+. .+.+++++||+++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l~------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg 368 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ-E-IYEQVK------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK 368 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH-H-HHHHHT------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred hhcCCEEEEEeccCCCCCHHHH-H-HHHhcc------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence 7889999999999998776542 2 444443 26999999999997554332 111111 3567999999999
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 028329 163 VNVQQCFEELVLKILDTP 180 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~ 180 (210)
.|+++++++|.+.+....
T Consensus 369 ~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 369 QGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BSHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 999999999999886543
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=5.9e-21 Score=153.79 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=104.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLKLAI 66 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 66 (210)
...++|+++|+.++|||||+++|++... .... + |....+....+.. . + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4569999999999999999999985432 1111 1 3322332222211 1 1 1378999
Q ss_pred EeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHH
Q 028329 67 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGI 144 (210)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~ 144 (210)
||+||+..+...+...+..+|++++|+|+++........+ .+..+.. ....|+++++||+|+..... ...+++.
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988887777888999999999996532222222 1222222 12257999999999965432 2344555
Q ss_pred HHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 145 NFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 145 ~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.++.. .+++++++||+++.|+++++++|.+.+...
T Consensus 162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 65554 357899999999999999999999876543
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=1.8e-21 Score=159.51 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=109.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCC----CC--CCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN----FE--ELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY 83 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~----~~--~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (210)
...++|+++|++++|||||+++|++.. .. ......+.+.. ...+.+++ ..+.+||+||+..+...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999999766 11 11112222221 12233333 6799999999999988888889
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHh----CCcEEEE
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREY----GCLFIEC 157 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~ 157 (210)
..+|++++|+|+++...-... + ++..+.. .++|+++++||+|+..... ...+++..++... +++++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~-e-~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTG-E-HMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hhCCEEEEEEecCCCccHHHH-H-HHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 999999999999984322221 1 2222222 3578899999999975322 1233445555554 5679999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~ 177 (210)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999875
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=3.1e-21 Score=160.81 Aligned_cols=160 Identities=21% Similarity=0.282 Sum_probs=114.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCC---------CC---CCceeeeE----EEEEEE-CCeEEEEEEEeCCCc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE---------LS---PTIGVDFK----VKYVDV-GGKKLKLAIWDTAGQ 72 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~---------~~---~~~~~~~~----~~~~~~-~~~~~~~~l~D~~g~ 72 (210)
+...+|+++|+.++|||||+++|+... ... .. ...+.++. ...+.. ++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456899999999999999999997521 110 00 01222322 111221 556789999999999
Q ss_pred cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 152 (210)
..+...+...++.+|++|+|+|+++..+...... |..... .++|+++++||+|++... ..+...++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCC
Confidence 9999888888999999999999999888777666 554443 468999999999997543 12223444455565
Q ss_pred ---cEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 153 ---LFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 153 ---~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
+++++||++|.|++++|+++.+.+...
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 389999999999999999999988543
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=1.8e-21 Score=146.80 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=105.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhhc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQ--------ERFRTLTSSY 82 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~ 82 (210)
...++|+++|.+|||||||+|+|++........ +.+++..............+.+|||||. ..+.......
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 467999999999999999999999887654332 3233333322222223456899999995 2222222222
Q ss_pred ----ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHh
Q 028329 83 ----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVT------KKEGINFAREY 150 (210)
Q Consensus 83 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~~~ 150 (210)
...+|++++|+|+++..... ..+...+.... ...+.|++|++||.|+....... .+....+....
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 38999999999998532221 11333333221 11268999999999996542211 13456667777
Q ss_pred CCcEEEEccCC-----CCCHHHHHHHHHHHHHcCCC
Q 028329 151 GCLFIECSAKT-----RVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 151 ~~~~~~~sa~~-----~~~i~~~~~~l~~~~~~~~~ 181 (210)
+..++.++... +.+++++++.|.+.+.++..
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 87777777654 57999999999999886543
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=5.9e-21 Score=154.89 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=106.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC------------------------------CCCCceeeeEEEEEEECC
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------------------------LSPTIGVDFKVKYVDVGG 59 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 59 (210)
+....++|+++|++++|||||+++|+...... .....+.+.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 44567999999999999999999995432100 001234455554445555
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCccc---HH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDK 132 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~ 132 (210)
....+.+|||||+..|...+...+..+|++|+|+|+++... |+ .... .+..+. ..++| +++++||+|+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCCC
Confidence 56789999999999999988888999999999999998642 11 1111 112222 23466 8999999998
Q ss_pred CCCc------eecHHHHHHHHHHhC------CcEEEEccCCCCCHHHHHH
Q 028329 133 ESER------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 133 ~~~~------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 170 (210)
.... ....++...++...+ ++++++||++|.|++++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5321 112233444444444 4699999999999999665
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=5e-22 Score=163.18 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=101.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCeE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...+||+++|++++|||||+++|++.... ......+.++......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35799999999999999999999754110 001123444444444555566
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHH-----HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN-----LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
..+.|||+||+..|...+...+..+|++|+|+|+++..++.. ........... ....|++||+||+|+...+
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTTC
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccch
Confidence 789999999999999999999999999999999998754322 11112222221 2235699999999997543
Q ss_pred eecHHHH----HHHHHHh-----CCcEEEEccCCCCCHHH
Q 028329 137 VVTKKEG----INFAREY-----GCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 137 ~~~~~~~----~~~~~~~-----~~~~~~~sa~~~~~i~~ 167 (210)
....+++ ..++... +++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 3333333 3333333 35799999999999875
No 148
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=2.5e-21 Score=150.44 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=95.7
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
..+.+.+||++|++.++..|..++++++++|+|||++ +.+++.+... |+..+.......++|++|++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence 3478999999999999999999999999999999665 6677877777 4444433344467999999999
Q ss_pred CCCCCCc----------------eecHHHHHHHHH----------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 130 VDKESER----------------VVTKKEGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 130 ~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+|+..++ ..+.+++..++. ..++.+++|||+++.||+.+|+.+.+.+++..
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 9985433 356677777743 34566899999999999999999999998654
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=3.1e-21 Score=156.79 Aligned_cols=161 Identities=22% Similarity=0.186 Sum_probs=108.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL----------- 78 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------- 78 (210)
+..++|+++|++|||||||+++|++.......+.++++. ....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 456999999999999999999999887543334333333 2334556665 5789999996432221
Q ss_pred -hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-H----HhCC
Q 028329 79 -TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-R----EYGC 152 (210)
Q Consensus 79 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~ 152 (210)
....+..+|++++|+|+++..+..... +...+. ..++|+++|+||+|+...+....++..... . ...+
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 329 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence 123466789999999999876655421 333333 246899999999999765443333332222 2 2357
Q ss_pred cEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 153 LFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 153 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+++++||++|.|++++|+.+.+.+.+..
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998876644
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=3.1e-22 Score=163.42 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=105.3
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC--------ccccccchh
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG--------QERFRTLTS 80 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~ 80 (210)
.......+|+++|.+|||||||+++|++..+....++++.+..............+.+||||| +..+...+.
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 333456899999999999999999999988766666778777777667766667899999999 666677777
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEcc
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSA 159 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa 159 (210)
.++..+|++|+|+|..+..+... ..+...+. ..++|+++|+||+|+...... ... ...++. .++++||
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~~----~~e-~~~lg~~~~~~iSA 166 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRAN----IYD-FYSLGFGEPYPISG 166 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CC-SGGGSSSSEEECCT
T ss_pred hhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhhh----HHH-HHHcCCCceEEeec
Confidence 88899999999999877544322 22444443 357899999999998533211 111 112343 4789999
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 028329 160 KTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (210)
++|.|+.++++++.+.+.+
T Consensus 167 ~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGG
T ss_pred ccccchHHHHHHHHhhccc
Confidence 9999999999999887654
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=6.1e-21 Score=153.82 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=111.7
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEE
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLK 63 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~ 63 (210)
......++|+++|++++|||||+++|++... .... + |....+....+.. . + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 3456779999999999999999999985432 1111 1 3322232222211 0 1 1378
Q ss_pred EEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHH
Q 028329 64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKK 141 (210)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~ 141 (210)
+.+||+||+..+.......+..+|++|+|+|+++........+ .+..+... ...|+++++||+|+..... ...+
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHH
Confidence 9999999999888877777888999999999996531222222 11222221 2257899999999975432 2233
Q ss_pred HHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 142 EGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 142 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
++..++.. .+++++++||+++.|+++++++|.+.+...
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 44455443 357899999999999999999998876543
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=1.9e-21 Score=148.84 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=92.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-C--------CCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------c
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-L--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------F 75 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~ 75 (210)
...++|+++|.+|+|||||+|+|++..... . .++.+.+.....+..++..+.+.+|||||... +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 356999999999999999999988765432 2 22344444444444455667999999999632 2
Q ss_pred ccch-------hhcc-------------cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 76 RTLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 76 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
.... ..++ ..+|+++++++.+..... .....+...+.. .+|+++|+||+|+...
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE-----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence 2221 1112 237899999987653222 222224444432 6899999999998644
Q ss_pred ceec--HHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 136 RVVT--KKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 136 ~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
.... .+.+...+...+++++.+|++++.++++++++|.+.+
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 3322 2344555566789999999999999999999988754
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.1e-22 Score=156.50 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=92.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 74 (210)
...++|+++|++|+|||||+++|++.... ..+ ++.+.......+..++....+.+||+||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 35699999999999999999998765432 111 22333333333344566778999999998 55
Q ss_pred cccchh-------hcccCc-------------cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 75 FRTLTS-------SYYRGA-------------QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
+..++. .++..+ |+++|+++.. ..++..+...|...+ ...+|+|+|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence 555554 333332 3455555432 345555543354443 25689999999999976
Q ss_pred CceecH--HHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 135 ERVVTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 135 ~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+.+.. +++..++...+++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 554443 456666667789999999999999 88899999988766544
No 154
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=1.4e-20 Score=148.06 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=91.1
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
..+.+.+||++|++.++..|..++++++++|+|||++ +.++++.... |+..+.......++|++||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5789999999999999999999999999999999998 7788999888 5555544333467999999999
Q ss_pred CCCCCCce---------------------ecHHHHHHHHHH----------------hCCcEEEEccCCCCCHHHHHHHH
Q 028329 130 VDKESERV---------------------VTKKEGINFARE----------------YGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 130 ~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
+|+..++. ...+++..++.. ..+.+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99843211 124556666433 12346899999999999999999
Q ss_pred HHHHHc
Q 028329 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+.+
T Consensus 340 ~~~I~~ 345 (354)
T 2xtz_A 340 DETLRR 345 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=3.6e-20 Score=146.66 Aligned_cols=163 Identities=19% Similarity=0.112 Sum_probs=107.0
Q ss_pred EE-EEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhhcc
Q 028329 15 FK-LLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSYY 83 (210)
Q Consensus 15 ~~-i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 83 (210)
++ |+++|++|||||||+++|++..... ..+....+.....+.+++ ..+.+|||+|... +...+ ..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 44 9999999999999999999876521 122222234455566666 4678999999622 22222 246
Q ss_pred cCccEEEEEEeCCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHh---CCcEEEE
Q 028329 84 RGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREY---GCLFIEC 157 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 157 (210)
..+|++++|+|++++. ....... |...+... ...+.|+++|+||+|+...... ....+..++... +.+++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 7899999999999876 4444433 55555542 2356899999999998654311 112222333444 2368999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 158 SAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
||+++.|+++++++|.+.+......
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred ECCCCcCHHHHHHHHHHHhcccCCC
Confidence 9999999999999999987655433
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=1e-20 Score=153.47 Aligned_cols=153 Identities=21% Similarity=0.170 Sum_probs=104.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC---CC---------C-CC-------------------ceeeeEEEEEEECC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE---EL---------S-PT-------------------IGVDFKVKYVDVGG 59 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~---~~---------~-~~-------------------~~~~~~~~~~~~~~ 59 (210)
...++|+++|++++|||||+++|++.... .. . .+ .+.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45699999999999999999999865411 00 0 01 12222222223333
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV- 138 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~- 138 (210)
....+.+||+||+..|...+...+..+|++|+|+|+++...... .. ++..+.. ..-.|+++|+||+|+......
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~-~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RR-HSYIASL---LGIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HH-HHHHHHH---TTCCEEEEEEECTTTTTSCHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHHH---cCCCeEEEEEEcCcCCcccHHH
Confidence 45679999999999998888888999999999999998754332 22 3333332 122368999999999753211
Q ss_pred ---cHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHH
Q 028329 139 ---TKKEGINFAREYG-----CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 139 ---~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 169 (210)
..++...++..++ ++++++||++|.|+++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 2344556666677 679999999999998843
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=1.2e-20 Score=149.82 Aligned_cols=146 Identities=8% Similarity=0.029 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
+|+++|++++|||||+++|+ ..+.+.......+......+.+||+||+..|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 12233322223444445679999999999988877778899999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEe-CCCCCCCceecH--HHHHHHHHHh---CCcEEE--EccCC---CC
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGN-KVDKESERVVTK--KEGINFAREY---GCLFIE--CSAKT---RV 163 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~sa~~---~~ 163 (210)
++ ..+....+ ++..+.. .++|. ++++| |+|+ ....... +++..++... .+++++ +||++ +.
T Consensus 93 ~~-g~~~qt~e-~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 PQ-GLDAHTGE-CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp TT-CCCHHHHH-HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred CC-CCcHHHHH-HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 54 33444444 4444433 34666 88888 9998 4332221 3444444443 367999 99999 99
Q ss_pred CHHHHHHHHHHHHHc
Q 028329 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++++.|.+.+..
T Consensus 166 gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 166 GVDELKARINEVAEK 180 (370)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccc
Confidence 999999999987754
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=1.2e-20 Score=151.54 Aligned_cols=160 Identities=17% Similarity=0.116 Sum_probs=112.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCC-------CCCC--------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDN-------FEEL--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
..++|+++|++++|||||+++|++.. +... ....+.+.......+......+.+||+||+..|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998631 1110 01233344433344444556789999999999888
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHhC--
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREYG-- 151 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 151 (210)
.....+..+|++|+|+|+++......... | ..+.. .++| +++++||+|+..... ...+++..++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88888999999999999998654433322 3 33332 3577 689999999864221 12245566666665
Q ss_pred ---CcEEEEccCCCCC----------HHHHHHHHHHHHHc
Q 028329 152 ---CLFIECSAKTRVN----------VQQCFEELVLKILD 178 (210)
Q Consensus 152 ---~~~~~~sa~~~~~----------i~~~~~~l~~~~~~ 178 (210)
++++++||+++.| +.++++.|.+.+..
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5799999998764 88888888876643
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=1.8e-21 Score=157.91 Aligned_cols=157 Identities=21% Similarity=0.249 Sum_probs=103.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC--CCCCCC----------------------------CCceeeeEEEEEEECCeE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS----------------------------PTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|++++|||||+++|+.. .+.... ...+.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35699999999999999999999864 221100 012233333333444455
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHH---HHHHHHhhhccCCC-CcEEEEEeCCCCCCCc-
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSD---VWAKEIDLYSTNQD-CIKLLVGNKVDKESER- 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~-~piivv~nK~D~~~~~- 136 (210)
..+.+||+||+..+...+...+..+|++|+|+|+++ .+|+.... +..+.+.. ....+ .|+++++||+|+....
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~-~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIIL-AKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHH-HHHTTCTTCEEEEECGGGSSSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHH-HHHcCCCeEEEEEEcccCCCccc
Confidence 679999999999999988889999999999999998 66664332 01111111 11123 3689999999996521
Q ss_pred -----eecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHHH
Q 028329 137 -----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 137 -----~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~ 170 (210)
....+++..++...+ ++++++||++|.|+.++++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 122345666666665 6799999999999986554
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=3e-21 Score=159.38 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=85.0
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------CC---CCCceeeeEEEEEEECCeEEEEEEEe
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------EL---SPTIGVDFKVKYVDVGGKKLKLAIWD 68 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D 68 (210)
+.....+|+++|++|+|||||+++|+..... .. ....+.++......+......+.|||
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD 88 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD 88 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence 3456789999999999999999999621110 00 00122222222223333457799999
Q ss_pred CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
|||+..+...+...++.+|++|+|+|+++..+...... |.. +. ..++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999999877665543 433 32 246899999999998643
No 161
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=7.4e-21 Score=150.22 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=87.5
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 130 (210)
.+.+.+||++|+..++..|..++++++++|+|||+++ .+++..... |+..+.......++|+||++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEECh
Confidence 4789999999999999999999999999999999999 778998888 44444433334679999999999
Q ss_pred CCCCCc----------------eecHHHHHHHHH-----------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 131 DKESER----------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 131 D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|+..++ ....+++..++. ..++.+++|||+++.|++++|+++.+.+.+.
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 985322 145666666652 2356789999999999999999999988643
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.83 E-value=1.8e-22 Score=166.17 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=109.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+.++|+++|++++|||||+++|.+..+.... ++.+.++....+... ....+.||||||+..+...+...+..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4678999999999999999999876543222 222222222222221 12368999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHH---HHHh--CCcEEEEccCCCCCH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINF---AREY--GCLFIECSAKTRVNV 165 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~~~~i 165 (210)
|+|+++......... | ..+. ..++|++|++||+|++...... ..+...+ +..+ .++++++||++|.|+
T Consensus 82 VVDa~dg~~~qt~e~-l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 82 VVAADDGVMKQTVES-I-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp ECBSSSCCCHHHHHH-H-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEECCCCccHHHHHH-H-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999998765544432 2 2222 3468999999999986433221 1111111 0111 247999999999999
Q ss_pred HHHHHHHHHHHH
Q 028329 166 QQCFEELVLKIL 177 (210)
Q Consensus 166 ~~~~~~l~~~~~ 177 (210)
+++|+++...+.
T Consensus 156 ~eLle~I~~l~~ 167 (537)
T 3izy_P 156 MALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHhhh
Confidence 999999998764
No 163
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.8e-21 Score=138.53 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=86.7
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A 86 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 86 (210)
....++|+++|++|||||||+++|++..+.........+. ..+.....+.+||+||...+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3567899999999999999999999887644221111111 111144678999999999888877777765 8
Q ss_pred cEEEEEEeCC-CcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCce
Q 028329 87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERV 137 (210)
Q Consensus 87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~ 137 (210)
|++++|||++ +..++..+..++...+.... ...++|+++|+||+|+.....
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 9999999999 88889888874444433221 235799999999999975543
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=1e-20 Score=152.33 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=113.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcC--------CCCCCC--------CCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD--------NFEELS--------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
....++|+++|++++|||||+++|++. .+.... ...+.++......+......+.+||+||+..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999999863 211110 0233444444444544556789999999999
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHh
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREY 150 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~ 150 (210)
|.......+..+|++|+|+|+++..... ... |+..+.. .++| +++++||+|+..... ...+++..++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9888888899999999999999876433 333 4444443 3577 889999999974221 1223455666665
Q ss_pred C-----CcEEEEccCCCCC------------------HHHHHHHHHHHHH
Q 028329 151 G-----CLFIECSAKTRVN------------------VQQCFEELVLKIL 177 (210)
Q Consensus 151 ~-----~~~~~~sa~~~~~------------------i~~~~~~l~~~~~ 177 (210)
+ ++++++||+++.| +.++++.+.+.+.
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 5 6799999999987 6777777766554
No 165
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.3e-20 Score=146.90 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=93.4
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
..+.+.+||++|++.++..|..++++++++|+|||++ +.+++.+... |+..+.......++|++|++||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEEC
Confidence 4578999999999999999999999999999999998 6788888888 4444443344567999999999
Q ss_pred CCCCCCce---------------ecHHHHHHHHHHh---------------------------CCcEEEEccCCCCCHHH
Q 028329 130 VDKESERV---------------VTKKEGINFAREY---------------------------GCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 130 ~D~~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~sa~~~~~i~~ 167 (210)
+|+..++. ...+++..++... .+.++++||++..+++.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 99843211 1345555444322 35689999999999999
Q ss_pred HHHHHHHHHHc
Q 028329 168 CFEELVLKILD 178 (210)
Q Consensus 168 ~~~~l~~~~~~ 178 (210)
+|+.+.+.+++
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6e-21 Score=160.19 Aligned_cols=156 Identities=16% Similarity=0.114 Sum_probs=102.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------------------------------CceeeeEEEEEEECCeE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------------------------------TIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|++++|||||+++|++........ ..|.++......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999998663321110 12333333333334445
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 138 (210)
..+.||||||+..+...+...+..+|++|+|+|+++.. ++....+ +...+.........|++||+||+|+......
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q-t~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH-HHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhH-HHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 67999999999999998889999999999999998742 1100111 2222211111222459999999999753322
Q ss_pred c----HHHHHHHHHHhC-----CcEEEEccCCCCCHHHH
Q 028329 139 T----KKEGINFAREYG-----CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 139 ~----~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 168 (210)
. ..+...++...+ ++++++||++|.|+.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2 223334444443 57999999999999876
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=3.4e-20 Score=154.82 Aligned_cols=157 Identities=21% Similarity=0.147 Sum_probs=104.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYV------------DVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~~ 75 (210)
+.++|+++|++++|||||+++|++.......+ +.+..+..... .++.....+.||||||+..|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765433221 22211110000 00011125899999999999
Q ss_pred ccchhhcccCccEEEEEEeCCC---cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------H
Q 028329 76 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------K 140 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~------------~ 140 (210)
...+...++.+|++|+|+|+++ +.+++.+. .+. ..++|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 9998888999999999999998 44443332 222 2468999999999986432110 0
Q ss_pred H-----------HHHHHHHHhC---------------CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 141 K-----------EGINFAREYG---------------CLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 141 ~-----------~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+ +........+ ++++++||++|.|+++++++|...+..
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 1111111112 379999999999999999999987753
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=8.1e-21 Score=155.20 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=90.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCC----------------------C------CCCceeeeEEEEEEECCeE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE----------------------L------SPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|++++|||||+++|+... +.. . ....+.|.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 467999999999999999999997421 110 0 0012222222211222234
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCc-
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESER- 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~- 136 (210)
..+.|||+||+..|...+...+..+|++|+|+|+++.. +|+...+ +.+.+... ...++| ++|++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~-~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLA-RTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHH-HHTTCSSEEEEEECTTSTTCSS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHH-HHcCCCEEEEEEECccCCCccc
Confidence 67899999999999988888899999999999999862 3322111 22222211 123566 89999999995421
Q ss_pred -----eecHHHHHHHHHHh-------CCcEEEEccCCCCCHHHHH
Q 028329 137 -----VVTKKEGINFAREY-------GCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 137 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~ 169 (210)
....+++..++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223455666655 3569999999999998765
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=1.2e-19 Score=158.68 Aligned_cols=161 Identities=15% Similarity=0.062 Sum_probs=110.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCC-------CC--------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-------FE--------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|++.. +. ....+.+.++....+.++.....+.+|||||+..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4467999999999999999999998631 10 01113444444333444455577999999999999
Q ss_pred ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHhC
Q 028329 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREYG 151 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 151 (210)
.......+..+|++|+|+|+++....+ ... ++..+.. .++| +||++||+|+..... ...+++..++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrE-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TRE-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHH-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHH-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 888888899999999999999875433 333 3333332 2577 789999999975322 12345566666665
Q ss_pred -----CcEEEEccCCC--------CCHHHHHHHHHHHHH
Q 028329 152 -----CLFIECSAKTR--------VNVQQCFEELVLKIL 177 (210)
Q Consensus 152 -----~~~~~~sa~~~--------~~i~~~~~~l~~~~~ 177 (210)
++++++||++| .|+.++++.|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 57999999999 468888888776554
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=2.9e-19 Score=131.27 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=101.1
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTL 78 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~ 78 (210)
+.....+|+++|++|||||||+++|++..+ ....++.+.+.....+.+++ .+.+||+||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 345568999999999999999999998763 33344666655444344333 478999999642 2222
Q ss_pred hhhcc---cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhC--
Q 028329 79 TSSYY---RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYG-- 151 (210)
Q Consensus 79 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~-- 151 (210)
...++ ..++++++++|+++..+..... +...+. ..+.|+++++||+|+..... .....+..++...+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 22233 5789999999999876653211 222222 24688899999999864321 11334455555444
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 152 CLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 152 ~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+.++++|++++.++++++++|.+.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999887643
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=3.7e-20 Score=143.25 Aligned_cols=159 Identities=21% Similarity=0.154 Sum_probs=100.8
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----CCCce----------------------eeeE------------
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----SPTIG----------------------VDFK------------ 51 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----~~~~~----------------------~~~~------------ 51 (210)
....++|+++|.+|||||||+++|++..+... ...++ ++..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999998876421 11121 0000
Q ss_pred -----------EEEEEECC-eEEEEEEEeCCCcc-------------ccccchhhcccCccEEE-EEEeCCCcccHHHHH
Q 028329 52 -----------VKYVDVGG-KKLKLAIWDTAGQE-------------RFRTLTSSYYRGAQGII-MVYDVTRRDTFTNLS 105 (210)
Q Consensus 52 -----------~~~~~~~~-~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 105 (210)
...+.+.+ ....+.+|||||.. .+......++..++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00000000 12579999999964 23445566777787666 799998765444332
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hC-CcEEEEccCCCCCHHHHHHHHHH
Q 028329 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE--YG-CLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
. +...+. ..+.|+++|+||+|+........+........ .+ .+++++||+++.|++++|+++.+
T Consensus 183 ~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp H-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred H-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 2 444433 35689999999999965443222221110001 12 35789999999999999999877
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=5.9e-21 Score=155.67 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=101.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCC----------------C------C------CceeeeEEEEEEECCeE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL----------------S------P------TIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~----------------~------~------~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|++++|||||+++|++.. +... . + ..+.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 456999999999999999999998641 1100 0 0 01222222222333445
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES 134 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~ 134 (210)
..+.|||+||+..|...+...+..+|++|+|+|+++.. +|+ .... ++..... .++| ++|++||+|+..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH----cCCCeEEEEEEcccccc
Confidence 67999999999999988888999999999999999753 221 2222 2222221 3454 899999999963
Q ss_pred Cce----ecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHH
Q 028329 135 ERV----VTKKEGINFAREYG-----CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 135 ~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 168 (210)
... ...+++..++...+ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 12334555556665 57999999999998754
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=4.8e-19 Score=134.62 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=83.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccchhhccc-----
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR----- 84 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----- 84 (210)
...++|+++|++|+|||||+++|++.......+..+.+. ....+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 357999999999999999999999887644333333333 333334444 47999999998776654433332
Q ss_pred ----CccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCc
Q 028329 85 ----GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 85 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~ 136 (210)
.+|++++|++++... +......|+..+..... ....|+++|+||+|+...+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 789999999987654 44443336666654322 2235899999999995443
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=9.6e-21 Score=158.52 Aligned_cols=151 Identities=21% Similarity=0.168 Sum_probs=81.8
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCe
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGK 60 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
....++|+++|++++|||||+++|+..... ......+.|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 346799999999999999999999632100 00012344444444444555
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cH---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~ 133 (210)
...+.||||||+..|...+...+..+|++|+|+|+++.. .+ ..... .+..+.. .++| +|||+||+|+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~----lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRA----LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHH----SSCCCEEEEEECGGGG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHH----cCCCeEEEEEeccccc
Confidence 678999999999999988888899999999999998643 11 11111 2222222 2454 89999999986
Q ss_pred CCceec----HHHHHHHH-HHhCC-----cEEEEccCCCCCHH
Q 028329 134 SERVVT----KKEGINFA-REYGC-----LFIECSAKTRVNVQ 166 (210)
Q Consensus 134 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~ 166 (210)
...... ..++..++ ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 422111 22333333 33344 69999999999998
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=3.2e-21 Score=157.57 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=102.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.+..+|+++|++++|||||+++|....+.... ..+.+.......+......+.||||||+..|...+...+..+|++++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCcccc-CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 35679999999999999999999865443211 11111111111122223468999999999999998888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHH--HHHHHHHHhC--CcEEEEccCCCCCH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKK--EGINFAREYG--CLFIECSAKTRVNV 165 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~sa~~~~~i 165 (210)
|+|+++......... | ..+. ..++|+++++||+|++... .+..+ +...+...++ ++++++||++|.|+
T Consensus 81 VVda~~g~~~qT~e~-l-~~~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA-I-QHAK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp EEETTTBSCTTTHHH-H-HHHH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred EeecccCccHHHHHH-H-HHHH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 999998533222221 2 2222 2468999999999996421 11100 0000111222 68999999999999
Q ss_pred HHHHHHHHH
Q 028329 166 QQCFEELVL 174 (210)
Q Consensus 166 ~~~~~~l~~ 174 (210)
+++|+++..
T Consensus 155 ~eLle~I~~ 163 (501)
T 1zo1_I 155 DELLDAILL 163 (501)
T ss_dssp TTHHHHTTT
T ss_pred chhhhhhhh
Confidence 999999864
No 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1.6e-18 Score=132.25 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=83.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh-------h--cc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS-------S--YY 83 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~--~~ 83 (210)
..++|+++|.+|+|||||+++|++..+....+..+.+.....+.+......+.+|||||...+..... . ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 57999999999999999999999887654444444444333333433456799999999866543221 1 13
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCc
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~ 136 (210)
..+|++++|+|++.. ++......|...+..... ....|+++|+||+|+....
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 468999999998753 344443336666654321 2237999999999996554
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=4.1e-18 Score=140.82 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=80.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------CCCCceeeeEEEEEEECCeEEEEEEEeC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE---------------------LSPTIGVDFKVKYVDVGGKKLKLAIWDT 69 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 69 (210)
.....+|+++|++++|||||+++|+...... .....+.++......+......+.+|||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 3567999999999999999999998532100 0012222222222223334567999999
Q ss_pred CCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
||+..+...+...+..+|++|+|+|+++...... .. ++..+ ...++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~~----~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEVT----RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHHH----TTTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHHH----HHcCCCEEEEEcCcCCcc
Confidence 9999998888888999999999999998643221 22 22222 235789999999999854
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=3.8e-18 Score=144.75 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=83.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.....+|+++|++|+|||||+++|++........ ..+.++......+....+.+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 4566899999999999999999998433210000 01223333333333345789999999999
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
.+...+...++.+|++++|+|+++....... . ++..+.. .++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHHH----ccCCEEEEecCCchh
Confidence 9988888899999999999998876544333 2 3333332 368999999999986
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=3.7e-18 Score=145.42 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=107.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--------------eeE--------------------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--------------DFK-------------------------- 51 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--------------~~~-------------------------- 51 (210)
...++|+|+|.+|+|||||+|+|++.........+++ +..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3579999999999999999999998876443332221 110
Q ss_pred ---------------EEEEEECCeE--EEEEEEeCCCccc---cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHH
Q 028329 52 ---------------VKYVDVGGKK--LKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKE 111 (210)
Q Consensus 52 ---------------~~~~~~~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 111 (210)
...+...... ..+.||||||... ....+..++..+|++++|+|++++.+...... |...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence 0000110000 2589999999654 33455677889999999999998877766544 5444
Q ss_pred HhhhccCCCCcEEEEEeCCCCCCCceecHH----------HHHHH----H-HH--------hCCcEEEEccC--------
Q 028329 112 IDLYSTNQDCIKLLVGNKVDKESERVVTKK----------EGINF----A-RE--------YGCLFIECSAK-------- 160 (210)
Q Consensus 112 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~sa~-------- 160 (210)
+.. .+.|+++|+||+|+........+ ..... . .. ...+++++||+
T Consensus 226 l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IKG----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TTT----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHh----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 432 36789999999998543311110 11111 1 11 12368999999
Q ss_pred ------CCCCHHHHHHHHHHHHHcCC
Q 028329 161 ------TRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 161 ------~~~~i~~~~~~l~~~~~~~~ 180 (210)
++.|++++++++.+.+.+..
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred CchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998776543
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=1.3e-17 Score=133.70 Aligned_cols=162 Identities=22% Similarity=0.201 Sum_probs=107.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchh---hcccCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----RTLTS---SYYRGA 86 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~~~~ 86 (210)
-.|+++|++|||||||+++|++.... ..++........-.+..++ ...+.+||+||.... ..+.. ..+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 34789999999999999999976431 1222111111222233332 246889999996321 11212 234579
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 165 (210)
+.+++++|++ ...+..+.. |...+..+.. ....|.++++||+|+... ...+.........+.+++.+||+++.|+
T Consensus 237 ~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 9999999998 556666655 4444443321 124788999999998654 3334445555556789999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 028329 166 QQCFEELVLKILDTPS 181 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~~ 181 (210)
++++++|.+.+.+...
T Consensus 313 ~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 313 PALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987654
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=8e-18 Score=143.28 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=83.2
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCC---------------CCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL---------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
.+.....+|+++|++|+|||||+++|+... +... ....+.+.......+......+.+|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 344678999999999999999999998321 1000 00112222211222222346799999999
Q ss_pred ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
+..+...+...++.+|++|+|+|+++..+...... |... .. .++|+++++||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~-~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-EK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHH-HH----TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHH-HH----cCCCEEEEEECCCccc
Confidence 99998888899999999999999999887766554 5433 22 3789999999999854
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=7.3e-19 Score=136.00 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=88.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC-CCCCCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD-NFEELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 74 (210)
...++|+++|++|||||||+++|.+. .++..+ ++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998875 333221 11111111111222444578999999997 44
Q ss_pred cccchh-------hccc-------------CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 75 FRTLTS-------SYYR-------------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
+..... .++. .+++++|+.+.+. .++..... ..++.. ...+++++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l--~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI--HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH--TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH--HhcCCEEEEEEeCCCCC
Confidence 444332 2222 2344555555432 12333322 223222 23578999999999975
Q ss_pred Ccee--cHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 135 ERVV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+.+ ..+++..++...+++++++||+++ +++++|.++.+.+.+..+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 4433 345778888889999999999999 9999999999999765543
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=7.2e-18 Score=131.36 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=99.8
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-C----CCceeeeEEE--------------------------------
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-S----PTIGVDFKVK-------------------------------- 53 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~----~~~~~~~~~~-------------------------------- 53 (210)
.....+|+|+|++|||||||+++|++..+... . ..++......
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 34568999999999999999999998876211 1 1111000000
Q ss_pred ---------------------EEE-ECCeEEEEEEEeCCCccc-------------cccchhhcccCccEEEEEEeCCCc
Q 028329 54 ---------------------YVD-VGGKKLKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRR 98 (210)
Q Consensus 54 ---------------------~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~ 98 (210)
.+. .......+.+|||||... +......++..+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 011124689999999643 344566678899999999997443
Q ss_pred ccH-HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC---C---CCCHHHHHHH
Q 028329 99 DTF-TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK---T---RVNVQQCFEE 171 (210)
Q Consensus 99 ~s~-~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~~~~~ 171 (210)
... ..... +...+. ..+.|+++|+||+|+........+.........+..++++++. + +.|+.++++.
T Consensus 181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211 11111 333332 3578999999999996544322222211001122456666654 4 7899999999
Q ss_pred HHHHHHcCCC
Q 028329 172 LVLKILDTPS 181 (210)
Q Consensus 172 l~~~~~~~~~ 181 (210)
+...+.....
T Consensus 256 ~~~~~~~~~~ 265 (315)
T 1jwy_B 256 EILYFKNHPI 265 (315)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHhCCCc
Confidence 9888866544
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=8.2e-18 Score=134.97 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=83.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-C--------CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-S--------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------- 76 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------- 76 (210)
-.++|+|+|++|||||||+++|++..+... . ++.........+...+....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 458899999999999999999998765311 1 111111111111223334578999999965431
Q ss_pred c------------------chhhcccCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce
Q 028329 77 T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV 137 (210)
Q Consensus 77 ~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 137 (210)
. ....++..+++.+++|+.... .++......|+..+. ..+|+|+|+||+|+...+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHH
Confidence 1 112344555554455554432 344444333555553 3689999999999876555
Q ss_pred ecH--HHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 138 VTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 138 ~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
+.. +.+...+...+++++++|++++.+++++|..+...+
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 543 567778888899999999999999998887776543
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.73 E-value=2.8e-18 Score=136.09 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=101.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-Cce---eeeE-------------------------------------
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIG---VDFK------------------------------------- 51 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~---~~~~------------------------------------- 51 (210)
...+|+|+|++|||||||+++|++..+..... ... ....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 44599999999999999999999977632221 110 0000
Q ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcccc-------------ccchhhcccCccEEEEEEeCCCcccHHHHH
Q 028329 52 ------------VKYVDV-GGKKLKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLS 105 (210)
Q Consensus 52 ------------~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 105 (210)
...+.+ ......+.+|||||...+ ......++.++|++++|+|..+.......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~- 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence 000000 011235899999997665 45566778999999999987654433222
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|...+.. ....+.|+++|+||+|+........+....+...++.+|++++++.+.++++.+....
T Consensus 192 --~~~l~~~-~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 192 --AIKISRE-VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp --HHHHHHH-SCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred --HHHHHHH-hcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 3444433 2345679999999999976554444333333344567899999999988887665543
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=2e-17 Score=140.82 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=82.6
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhc--CCCCCC---CC------------CceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL---SP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~--~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+.+...+|+++|++|+|||||+++|+. +.+... .+ ..+.+.......+......+.||||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 345679999999999999999999984 222100 00 1122221111122222467999999999
Q ss_pred cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
..+...+...++.+|++|+|+|+++..+...... |.. +.. .++|+++|+||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCccc
Confidence 9998888889999999999999999877665544 443 332 3689999999999854
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=9.4e-17 Score=136.90 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=83.1
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCC------------CC---CceeeeEEE--EEEEC-----CeEEEEE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL------------SP---TIGVDFKVK--YVDVG-----GKKLKLA 65 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~------------~~---~~~~~~~~~--~~~~~-----~~~~~~~ 65 (210)
+.++..+|+++|+.++|||||+++|+... +... .+ ..+.++... .+.+. +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34567899999999999999999997431 1110 00 122222222 22222 2348899
Q ss_pred EEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
||||||+..+...+...++.+|++|+|+|+++......... |.. .. ..++|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~-~~----~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQ-AN----KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEeCCCccc
Confidence 99999999988888889999999999999998765544433 432 22 24689999999999853
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=5.3e-18 Score=135.62 Aligned_cols=84 Identities=29% Similarity=0.352 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD-------------------VGG-KKLKLAIWDTAG 71 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g 71 (210)
++|+++|.+|||||||+|+|++.... ..++ |...+.....+. +++ ....+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987621 1222 111112211111 122 247899999999
Q ss_pred ccc----cccchh---hcccCccEEEEEEeCCCc
Q 028329 72 QER----FRTLTS---SYYRGAQGIIMVYDVTRR 98 (210)
Q Consensus 72 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 98 (210)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 222222 346899999999999875
No 189
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.71 E-value=4.2e-17 Score=129.86 Aligned_cols=123 Identities=19% Similarity=0.143 Sum_probs=95.8
Q ss_pred EEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcE
Q 028329 54 YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIK 123 (210)
Q Consensus 54 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~pi 123 (210)
.+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ .+++..+.. |+..+.......++|+
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeE
Confidence 344443 789999999999999999999999999999999999 889999988 6665554334567999
Q ss_pred EEEEeCCCCCCCce---e---------------------------cHHHHHHHH-----HH--------hCCcEEEEccC
Q 028329 124 LLVGNKVDKESERV---V---------------------------TKKEGINFA-----RE--------YGCLFIECSAK 160 (210)
Q Consensus 124 ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~ 160 (210)
+||+||+|+...+. . ..+++..++ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999843322 1 134555553 21 24567899999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 028329 161 TRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (210)
++.||+++|.++.+.+.+.
T Consensus 368 d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999999999888654
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=2.9e-17 Score=127.14 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=102.3
Q ss_pred HHHHHHhcCCCC-CC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc-cHHHHH
Q 028329 29 SLLLSFTSDNFE-EL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLS 105 (210)
Q Consensus 29 tli~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 105 (210)
+|+.+++.+.|. .. .|+.+..+. ..+..++ .+.+||+ ++.++.++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888875 43 357774443 2222222 6899999 8889999999999999999999999987 676666
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccCCCCCHHHHHHHHH
Q 028329 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
. |+..+.. .++|+++|+||+|+...+.+ +++..++..++ .+++++||+++.|++++|.++.
T Consensus 106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 5 7776654 47899999999999754432 44566677666 8999999999999999998764
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=8.9e-17 Score=127.17 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=70.7
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 140 (210)
.+.+.||||||... .....+..+|++++|+|....+....+.. .-.+.|+++|+||+|+........
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~----------~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK----------GVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT----------TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH----------hHhhcCCEEEEECCCCcChhHHHH
Confidence 35789999999432 23344588999999999877655433321 012358899999999854322211
Q ss_pred --HHHHHHHHH-------hCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 141 --KEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 141 --~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.+....... ++.+++.+||+++.|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111111111 25789999999999999999999988754
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=2.4e-16 Score=116.59 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=94.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-C----cee----------eeEEEEEEE----------------CCeE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-T----IGV----------DFKVKYVDV----------------GGKK 61 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~----~~~----------~~~~~~~~~----------------~~~~ 61 (210)
...+|+++|.+|||||||+++|.......... . .+. ......+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999998653211100 0 000 001111111 0123
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK 141 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~ 141 (210)
..+.+||++|...... .+....+.+++|+|+++.... ... +... .+.|+++|+||+|+........+
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI-------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence 5688999988411110 111256889999998875421 111 1111 13678999999998543223445
Q ss_pred HHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 142 EGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 142 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
+....+... +++++++||+++.|++++|++|.+.+.+.
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 555555554 46899999999999999999999887554
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.64 E-value=5.7e-18 Score=125.78 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=89.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE------------EEEEEEC-Ce------------------
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK------------VKYVDVG-GK------------------ 60 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~------------~~~~~~~-~~------------------ 60 (210)
..++|+++|++|||||||+++|+...+...+. +.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 46899999999999999999999765543222 2222221 1111111 10
Q ss_pred -EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028329 61 -KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT 139 (210)
Q Consensus 61 -~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~ 139 (210)
...+.++|++|.-.... .+-...+..+.++|.......... +... ...|.++|+||+|+.......
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~-------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGI-------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHH-------HTTCSEEEEECGGGHHHHTCC
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhH-------hhcCCEEEEeccccCchhHHH
Confidence 01344555555211100 011123455666664322211110 1111 136779999999986443345
Q ss_pred HHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 140 KKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 140 ~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.+++..++... +++++++||+++.|++++|+++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 55666666654 5789999999999999999999988754
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=2e-17 Score=130.88 Aligned_cols=158 Identities=21% Similarity=0.161 Sum_probs=92.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCcee----------------------eeE-------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----PTIGV----------------------DFK------------- 51 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----~~~~~----------------------~~~------------- 51 (210)
...++|+|+|.+|||||||+++|++..+.... ..++. ++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999988764211 11220 000
Q ss_pred ----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhcccCc-cEEEEEEeCCCcccHHHHHH
Q 028329 52 ----------VKYVDVG-GKKLKLAIWDTAGQER-------------FRTLTSSYYRGA-QGIIMVYDVTRRDTFTNLSD 106 (210)
Q Consensus 52 ----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~ 106 (210)
...+.+. .....+.||||||... +......++..+ +++++|.|++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0001111 1135699999999532 333455556555 55566667665322211111
Q ss_pred HHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CcEEEEccCCCCCHHHHHHHHHH
Q 028329 107 VWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN--FAREYG-CLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 107 ~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
+...+ ...+.|+++|+||+|+............. +....+ ..++.+||+++.|++++++++.+
T Consensus 189 -i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 -VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred -HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22322 23578999999999996543311111110 000123 24788999999999999999876
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.63 E-value=1.5e-15 Score=126.11 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=82.9
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcC---------------------CCCCCCCCceeeeEEEEEEECCeEEEEEEEeC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD---------------------NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 69 (210)
..+.-+|+|+|+.++|||||..+|+.. ++.......+.++....+.+......++|+||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 346789999999999999999999521 11111113333443333333344577999999
Q ss_pred CCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
||+..|.......++-+|++|+|+|+...-....... |....+ .++|.++++||+|.+.
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a~~-----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVCRM-----RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHHHH-----hCCceEEEEecccchh
Confidence 9999999999999999999999999998765555443 544333 4799999999999853
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=1.4e-14 Score=113.92 Aligned_cols=143 Identities=21% Similarity=0.197 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQERFR 76 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~ 76 (210)
++|+++|.||||||||+++|++.... ..+| |...+... +.+.+. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~--v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEE--EecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999999987631 2222 22222222 233332 1579999999976543
Q ss_pred ----cc---hhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHH----------------------------
Q 028329 77 ----TL---TSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKE---------------------------- 111 (210)
Q Consensus 77 ----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~---------------------------- 111 (210)
.+ ....++.+|++++|+|+++. +.+..+.. +...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~ 159 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEAK 159 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence 12 23347899999999999863 22222211 1111
Q ss_pred ------------Hh-------------------hhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329 112 ------------ID-------------------LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 112 ------------~~-------------------~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
+. .+......|+++++|+.|..-........+..++...+.+++++||+
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 11 01112358999999999864322334566777888889999999965
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=6e-16 Score=128.58 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=81.3
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCe-------E-------------------
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGK-------K------------------- 61 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~------------------- 61 (210)
.....++|+|+|.+|+|||||+|+|++..+. ...+.+.++.... +..+.. .
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE-EECCSSSEEECCC------------------CC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE-EEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 3456799999999999999999999988764 2222222211111 100000 0
Q ss_pred --------------EEEEEEeCCCccc-----------cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhc
Q 028329 62 --------------LKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS 116 (210)
Q Consensus 62 --------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 116 (210)
..+.||||||... +...+..++..+|++++|+|+++......... |+..+..
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~-- 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALRG-- 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTTT--
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHHh--
Confidence 2589999999764 33455667788999999999988654444444 5555443
Q ss_pred cCCCCcEEEEEeCCCCCCCc
Q 028329 117 TNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 117 ~~~~~piivv~nK~D~~~~~ 136 (210)
...|+++|+||+|+....
T Consensus 217 --~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp --CGGGEEEEEECGGGSCHH
T ss_pred --cCCCEEEEEECCCccCHH
Confidence 457899999999986543
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=1.1e-15 Score=132.60 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=85.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCC------------CCCC-----CC--CceeeeEEEEEE------------ECC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN------------FEEL-----SP--TIGVDFKVKYVD------------VGG 59 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~------------~~~~-----~~--~~~~~~~~~~~~------------~~~ 59 (210)
.....+|+|+|++++|||||+++|+... +... .. +.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3567899999999999999999998641 1100 00 111111122222 234
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
....+.||||||+..|...+...++.+|++|+|+|+++..++..... |..... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~-----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG-----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCCeEEEEECCCcc
Confidence 57899999999999999999999999999999999999888777654 544332 468999999999985
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.56 E-value=2e-14 Score=108.87 Aligned_cols=113 Identities=16% Similarity=-0.001 Sum_probs=70.4
Q ss_pred EEEEEEeCCCccccccchh------hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+.+.+|||||......... ..+.. +++++++|+....+.......+...... ....+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEeccccccc
Confidence 4799999999766543211 23455 8999999976544433332211111111 11235789999999998644
Q ss_pred ceecHHHHHH----------------------------HHHHhC--CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 136 RVVTKKEGIN----------------------------FAREYG--CLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 136 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
... ++... ++...+ .+++++||+++.|+++++++|.+.+..
T Consensus 187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 321 11111 123333 479999999999999999999887753
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.54 E-value=4.2e-14 Score=111.80 Aligned_cols=150 Identities=18% Similarity=0.134 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECC-------------------eEEEEEEEeCCCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGG-------------------KKLKLAIWDTAGQ 72 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~ 72 (210)
++|+++|.||||||||+++|++... ...++ |...+.... .+.. ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 6899999999999999999997642 12222 222222221 2221 2356999999997
Q ss_pred ccccc-------chhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHH------------------------
Q 028329 73 ERFRT-------LTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKE------------------------ 111 (210)
Q Consensus 73 ~~~~~-------~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~------------------------ 111 (210)
....+ .....++.+|++++|+|+++. +.+..+.. +...
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~ 158 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADR 158 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccch
Confidence 65421 223347899999999999862 11211110 0000
Q ss_pred ---------------Hhh-------------------hccCCCCcEEEEEeCCCCC--CC-ceecHHHHHHHHHHhCCcE
Q 028329 112 ---------------IDL-------------------YSTNQDCIKLLVGNKVDKE--SE-RVVTKKEGINFAREYGCLF 154 (210)
Q Consensus 112 ---------------~~~-------------------~~~~~~~piivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~ 154 (210)
+.. +.....+|+++++|+.|.. .. +......+..++...+.++
T Consensus 159 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~v 238 (368)
T 2dby_A 159 ERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEV 238 (368)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeE
Confidence 000 0001237999999999742 22 1345566788888889999
Q ss_pred EEEccCCCCCHHH
Q 028329 155 IECSAKTRVNVQQ 167 (210)
Q Consensus 155 ~~~sa~~~~~i~~ 167 (210)
+++||+...++.+
T Consensus 239 v~iSAk~E~el~e 251 (368)
T 2dby_A 239 VVVSARLEAELAE 251 (368)
T ss_dssp EEECHHHHHHHHT
T ss_pred EEeechhHHHHHH
Confidence 9999887444433
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=113.08 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=61.8
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK 141 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~ 141 (210)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ .+.|.++|+||+|+....... .
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i------l~~~~ivVlNK~Dl~~~~~~~-~ 232 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI------IEMADLVAVTKSDGDLIVPAR-R 232 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHHH-H
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH------HhcCCEEEEeeecCCCchhHH-H
Confidence 46789999995321 2344678999999999987643221211 11 135779999999985321110 0
Q ss_pred HHHHHHH----------HhCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 142 EGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 142 ~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
....+.. .+..+++.+||+++.|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1112211 12456899999999999999999988764
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.9e-14 Score=111.42 Aligned_cols=154 Identities=16% Similarity=0.082 Sum_probs=91.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG 85 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~ 85 (210)
...+|.++|.||||||||+|+|++... .....+++|.......+.....++.++|+||...-. ......++.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 457999999999999999999998653 333333444433333222233567888999953221 122345678
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC--------CceecHHHHHHHHHHhCCcEEE
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES--------ERVVTKKEGINFAREYGCLFIE 156 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+|++++|+|++++..-... +...+... ......|.+++.||.|... ......++...+.....+..-+
T Consensus 150 ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp CSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred cCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 9999999999987443332 22222221 1123467789999999632 1233455556555555544333
Q ss_pred EccCCCCCHHHHHH
Q 028329 157 CSAKTRVNVQQCFE 170 (210)
Q Consensus 157 ~sa~~~~~i~~~~~ 170 (210)
+-...+.+.+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 33344455555544
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=6.4e-15 Score=115.89 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 140 (210)
.+.+.||||||...... .....+|++++|+|++..+.+..+.. .. .+.|.++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~----~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK----GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH----HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH----hh------hcccCEEEEECCCCCChHHHHH
Confidence 35799999999654332 24578999999999976543222111 00 1357899999999864322211
Q ss_pred --HHHHHHHHHh-------CCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 141 --KEGINFAREY-------GCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 141 --~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
++........ ..+++++||+++.|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222212221 346899999999999999999998764
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=9.7e-15 Score=123.42 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=81.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC--CC------------CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN--FE------------ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~--~~------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
.+|.|+|+.++|||||..+|+... .. ...+ ..+.++....+.+......++|+||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 368999999999999999986211 10 0000 124445444455555667899999999999999
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
.....++-+|++|+|+|+...-....... |..... .++|.++++||+|.+
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v-~~~a~~-----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRIL-FHALRK-----MGIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHH-HHHHHH-----HTCSCEECCEECCSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHH-HHHHHH-----cCCCeEEEEeccccc
Confidence 99999999999999999987654433332 444333 368889999999974
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.49 E-value=6.8e-13 Score=113.53 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=83.5
Q ss_pred cccccccceEEEEEEEcCCCCcHHHHHHHHhcCC--------------CCC---CCCCceeeeEE--EEEEEC-----Ce
Q 028329 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDN--------------FEE---LSPTIGVDFKV--KYVDVG-----GK 60 (210)
Q Consensus 5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~--------------~~~---~~~~~~~~~~~--~~~~~~-----~~ 60 (210)
+....+.++.-+|+|+|+.++|||||..+|+... +.. .....+.++.. ..+.+. +.
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 3444556778899999999999999999985211 111 11122333332 223332 23
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
.+.++|+||||+..|.......++-+|++|+|+|+...-......- |...... ++|.++++||+|.+
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~~-----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANKY-----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHHH-----TCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHHc-----CCCeEEEEcccccc
Confidence 6889999999999999999999999999999999998765444433 5554443 68999999999974
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.44 E-value=3.2e-13 Score=114.97 Aligned_cols=158 Identities=20% Similarity=0.134 Sum_probs=96.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee-----------------------------------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF----------------------------------------- 50 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~----------------------------------------- 50 (210)
....+|+|+|.+++|||||+|+|++..+......+.+.+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 456799999999999999999999877622111110000
Q ss_pred ---------E--EEEEEECCeEEEEEEEeCCCccc-------------cccchhhcc-cCccEEEEEEeCCCcccHHHHH
Q 028329 51 ---------K--VKYVDVGGKKLKLAIWDTAGQER-------------FRTLTSSYY-RGAQGIIMVYDVTRRDTFTNLS 105 (210)
Q Consensus 51 ---------~--~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 105 (210)
. ...+... ....+.|+||||... +......++ ..+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0 0011111 112478999999543 112223333 5789999999998764433332
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH--HHhC-CcEEEEccCCCCCHHHHHHHHHHH
Q 028329 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA--REYG-CLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
. +...+. ..+.|+++|+||+|+............... ...+ .+++.+||+++.|++++++.+...
T Consensus 208 ~-ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp H-HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred H-HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2 333333 346899999999999654433221111000 0112 247889999999999999998873
No 207
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=97.72 Aligned_cols=108 Identities=9% Similarity=-0.039 Sum_probs=70.0
Q ss_pred CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHH---HHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHH
Q 028329 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVW---AKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGI 144 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~piivv~nK~-D~~~~~~~~~~~~~ 144 (210)
.+|+..++++|..++.++|++|||+|.+|.+.++ ....+ ...+.......++|++|++||. |++. .....++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 3478899999999999999999999999987665 33324 2222221112578999999995 6643 34444443
Q ss_pred HHHHH----hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 145 NFARE----YGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 145 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
+.... ....+..|||++|+|+.+.++||.+.+..+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 33221 233489999999999999999998777544
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.40 E-value=1.3e-12 Score=100.98 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=76.6
Q ss_pred ccccccchhhcccCccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHHHHH
Q 028329 72 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINFARE 149 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~ 149 (210)
++.+..+...++.++|++++|+|++++. ++..+.. |+..+.. .++|+++|+||+|+.....+. .++...++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~ 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 4566677778899999999999999986 7776665 7766654 578999999999996544222 3455666677
Q ss_pred hCCcEEEEccCCCCCHHHHHHHHH
Q 028329 150 YGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 150 ~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
.+++++++||+++.|++++++.+.
T Consensus 141 ~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 141 AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHhhcc
Confidence 789999999999999999987753
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=3.1e-13 Score=105.97 Aligned_cols=104 Identities=8% Similarity=0.069 Sum_probs=62.9
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 140 (210)
.+.+.|+||+|..... ......+|.+++++|+...+....+.. .+. +.+.++++||+|+........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~------~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF------ELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH------HHCSEEEEECCSTTCCHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh------ccccEEEEEchhccCchhHHH
Confidence 3568999999964322 233468999999999865432211111 000 235577789999743322222
Q ss_pred HHHHHHHHH----------hCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 141 KEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 141 ~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
.....+... +..+++.+|++++.|++++++.|.+.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222222221 1356889999999999999999988654
No 210
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.29 E-value=4.1e-12 Score=95.89 Aligned_cols=109 Identities=9% Similarity=-0.037 Sum_probs=74.9
Q ss_pred CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHH---HHHhhhccCCCCcEEEEEeC-CCCCCCceecHHHHH
Q 028329 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA---KEIDLYSTNQDCIKLLVGNK-VDKESERVVTKKEGI 144 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~piivv~nK-~D~~~~~~~~~~~~~ 144 (210)
.+|+..++++|..++.++|++|||+|.+|.+.++ ....+. ..+.......++|++|++|| .|++. .....++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4678999999999999999999999999998765 333232 23322112357999999996 68753 33444433
Q ss_pred HHHHH----hCCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 145 NFARE----YGCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 145 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+.... ....+..|||.+|+|+.+.++||.+.+.+++
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 33221 2234899999999999999999998875443
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=7e-11 Score=93.98 Aligned_cols=86 Identities=22% Similarity=0.229 Sum_probs=57.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~ 74 (210)
....+|+++|++|||||||+|+|++..... .+|........-.+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 446899999999999999999999866422 2332222222333444431 13588999999432
Q ss_pred -------cccchhhcccCccEEEEEEeCCC
Q 028329 75 -------FRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 75 -------~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455788999999999864
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=99.47 Aligned_cols=89 Identities=22% Similarity=0.195 Sum_probs=50.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQERF 75 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~ 75 (210)
...++|+++|.+|||||||+++|++.... ..+|..+.+.....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987642 12222222222223333332 235999999997654
Q ss_pred cc-------chhhcccCccEEEEEEeCCCccc
Q 028329 76 RT-------LTSSYYRGAQGIIMVYDVTRRDT 100 (210)
Q Consensus 76 ~~-------~~~~~~~~~d~~i~v~d~~~~~s 100 (210)
.+ .+...++.+|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 45566889999999999986544
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=2.9e-11 Score=95.95 Aligned_cols=140 Identities=15% Similarity=0.146 Sum_probs=84.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC-----CCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD-----NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS 81 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~ 81 (210)
.+|+++|.+|+|||||+|+|++. ........+++|.....+.+... +.++||||....... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 57999999999999999999975 23333334555665555555443 788999995432211 111
Q ss_pred cc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 82 YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
.+ ...+.++++++......+..+. . +. .....+.|+++++||.|........ .....+.+..+..+...++
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~--~---l~-~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLA--R---LD-YIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCG
T ss_pred HhcccccCceEEEEcCCceEEECCEE--E---EE-EccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCc
Confidence 11 5689999999985331111111 0 11 1234568999999999975443332 2334444556666555555
Q ss_pred CCCCC
Q 028329 160 KTRVN 164 (210)
Q Consensus 160 ~~~~~ 164 (210)
.+..+
T Consensus 313 ~~~~~ 317 (369)
T 3ec1_A 313 RYAAE 317 (369)
T ss_dssp GGTTT
T ss_pred hhhhh
Confidence 54433
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.94 E-value=1.3e-10 Score=92.06 Aligned_cols=134 Identities=12% Similarity=0.120 Sum_probs=77.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TS 80 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~ 80 (210)
.+|+++|.+|+|||||+|+|.+.. .......+++|.....+.+... +.++||||....... ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998753 2223345566666666655443 788999995432211 11
Q ss_pred hc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEc
Q 028329 81 SY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (210)
.. ....+.++++++......+..+. . + ......+.|+++++||.|....... ......+.+..+..++..+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---~-d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA--R---F-DYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--E---E-EEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE--E---E-EEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 11 35678899999875332111111 0 1 1123456899999999997543322 2222334444555444443
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=1.8e-09 Score=85.60 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=71.4
Q ss_pred CccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HH
Q 028329 71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NF 146 (210)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~ 146 (210)
..+.|.+++..+.+.+|++++|+|++++. ..|...+..+. .+.|+++|+||+|+..... ..+... .+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~-~~~~~~~~l~~~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKSV-KHDKVKHWMRYS 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTTS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCccc-CHHHHHHHHHHH
Confidence 35678888888888999999999999853 12555555443 3689999999999964432 222233 33
Q ss_pred HHHhCC---cEEEEccCCCCCHHHHHHHHHHHH
Q 028329 147 AREYGC---LFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 147 ~~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
+...+. +++.+||+++.|++++++.+.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 556677 799999999999999999987755
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=1.4e-09 Score=87.09 Aligned_cols=139 Identities=21% Similarity=0.243 Sum_probs=70.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC---CCceeeeEEEEEEE--CCeEEEEEEEeCCCccccc------------
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS---PTIGVDFKVKYVDV--GGKKLKLAIWDTAGQERFR------------ 76 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~------------ 76 (210)
.++++|+|++|+|||||++.|++..+.... ..++.+.....+.. .+....++++|++|.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 467999999999999999999987542111 11222222222222 2223478899998743210
Q ss_pred --cch----hhc---------ccC--ccE-EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329 77 --TLT----SSY---------YRG--AQG-IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 77 --~~~----~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 138 (210)
..+ ... +.. +|+ ++++.|....-+...+ . +...+. .++|+|+|.||+|.......
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-e-ilk~L~-----~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-V-TMKKLD-----SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-H-HHHHTC-----SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-H-HHHHHh-----hCCCEEEEEcchhccchHHH
Confidence 011 111 112 233 5556666544332221 1 233322 57899999999997544332
Q ss_pred cH--HHHHHHHHHhCCcEEEEcc
Q 028329 139 TK--KEGINFAREYGCLFIECSA 159 (210)
Q Consensus 139 ~~--~~~~~~~~~~~~~~~~~sa 159 (210)
.. ..+.......+++++.+|.
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHHcCCcEEecCC
Confidence 11 1222222335677777764
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.88 E-value=7.5e-09 Score=78.58 Aligned_cols=136 Identities=18% Similarity=0.115 Sum_probs=71.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------C-CceeeeEEEEEEECC--eEEEEEEEeCCCcccccc------
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------P-TIGVDFKVKYVDVGG--KKLKLAIWDTAGQERFRT------ 77 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-------~-~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~------ 77 (210)
.++++++|++|+|||||++.|++...+... + ..........+.... ....++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999865432211 0 000001111111121 223678999987321100
Q ss_pred ----c--------h----------hhcccCccEEEEEEeCC-CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 78 ----L--------T----------SSYYRGAQGIIMVYDVT-RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 78 ----~--------~----------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
. . ...+..+++.++++|.. .+-.-.. ......+.. . +++++|.+|.|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT----T-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh----c-CcEEEEEeccccCC
Confidence 0 0 01123468889999954 3322222 113333332 2 89999999999864
Q ss_pred Ccee--cHHHHHHHHHHhCCcEEE
Q 028329 135 ERVV--TKKEGINFAREYGCLFIE 156 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~ 156 (210)
.... ....+.......++.+|.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 4332 122334445566776654
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.84 E-value=5.1e-09 Score=85.87 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=84.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHh------cCCCC----C-CCCCc-----------eeeeEEEEEE-------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFT------SDNFE----E-LSPTI-----------GVDFKVKYVD------------- 56 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~------~~~~~----~-~~~~~-----------~~~~~~~~~~------------- 56 (210)
.....|+++|.+||||||+++.|. +.... . ..+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999997 32210 0 01100 0111100000
Q ss_pred ECCeEEEEEEEeCCCcccccc-chhh---c--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeC
Q 028329 57 VGGKKLKLAIWDTAGQERFRT-LTSS---Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNK 129 (210)
Q Consensus 57 ~~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK 129 (210)
.....+.+.|+||||...... ++.. . +..+|.+++|+|+....... . ....+.. .+|+ ++|+||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~-~a~~~~~-----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---A-QAKAFKD-----KVDVASVIVTK 249 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---H-HHHHHHH-----HHCCCCEEEEC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---H-HHHHHHh-----hcCceEEEEeC
Confidence 000235689999999654321 1111 1 22689999999998764321 1 1222222 1564 799999
Q ss_pred CCCCCCceecHHHHHHHHHHhCCcE------------------EEEccCCCCC-HHHHHHHHHHH
Q 028329 130 VDKESERVVTKKEGINFAREYGCLF------------------IECSAKTRVN-VQQCFEELVLK 175 (210)
Q Consensus 130 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~l~~~ 175 (210)
.|...... .+.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99863321 1222334455543 3367888888 98888887665
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.83 E-value=2.4e-08 Score=80.02 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=86.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee--eEEEEEEECCeEEEEEEEeCCCccccccchhh-----cc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD--FKVKYVDVGGKKLKLAIWDTAGQERFRTLTSS-----YY 83 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----~~ 83 (210)
....++++|++|||||||+|.|.+...+.... ..+.. ....... ......+.+||++|.......... .+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34589999999999999999999754322111 11111 1111111 111124788999985322111111 13
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceec----HHHHHHHH----H
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVT----KKEGINFA----R 148 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-------~~~~~~----~~~~~~~~----~ 148 (210)
...+..++ ++..... ..+..+...+.. .+.|+++|.||.|+. .-.... .+.+..+. .
T Consensus 147 ~~~~~~~~-lS~G~~~---kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 147 YEYDFFII-ISATRFK---KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp GGCSEEEE-EESSCCC---HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCcc---HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 33455554 7765322 111112333332 357999999999862 111111 22223332 1
Q ss_pred HhC---CcEEEEcc--CCCCCHHHHHHHHHHHHHcCCCc
Q 028329 149 EYG---CLFIECSA--KTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 149 ~~~---~~~~~~sa--~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
..+ ..++.+|+ ..+.|++++.+.+.+.+.+.+..
T Consensus 219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~ 257 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 257 (413)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence 222 25788899 56667999999999888665533
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.79 E-value=4.5e-09 Score=80.33 Aligned_cols=59 Identities=29% Similarity=0.450 Sum_probs=37.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
...++|+++|.||||||||+|+|.+.......+.+++|.....+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999877666666666665544444433 47899999964
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.76 E-value=4.6e-09 Score=83.27 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=70.1
Q ss_pred CccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH----H
Q 028329 71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN----F 146 (210)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~----~ 146 (210)
.++.|.+++..++..++++++|+|++++++. |...+..+. .+.|+++|+||+|+..... ..+.... +
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s------~~~~l~~~l--~~~piilV~NK~DLl~~~~-~~~~~~~~l~~~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS------FIPGLPRFA--ADNPILLVGNKADLLPRSV-KYPKLLRWMRRM 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG------CCSSHHHHC--TTSCEEEEEECGGGSCTTC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc------hhhHHHHHh--CCCCEEEEEEChhcCCCcc-CHHHHHHHHHHH
Confidence 4677888888888899999999999997641 333333332 3689999999999964432 2222233 3
Q ss_pred HHHhCC---cEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 147 AREYGC---LFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 147 ~~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
+...+. .++.+||+++.|++++++.+.+...
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 455666 6899999999999999999877653
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.76 E-value=3e-09 Score=80.44 Aligned_cols=57 Identities=18% Similarity=0.358 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
++++++|.+|+|||||+|+|.+.......++++++.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999877655556666665544444332 578999999654
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=1.7e-08 Score=77.12 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=69.0
Q ss_pred eCCCcc-ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028329 68 DTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF 146 (210)
Q Consensus 68 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~ 146 (210)
.+||+. .........+..+|+++.|+|+.++.+.... . +...+ .++|.++|+||+|+.... ..+....+
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~-l~~~l------~~kp~ilVlNK~DL~~~~--~~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-M-IEDIL------KNKPRIMLLNKADKADAA--VTQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-H-HHHHC------SSSCEEEEEECGGGSCHH--HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-H-HHHHH------CCCCEEEEEECcccCCHH--HHHHHHHH
Confidence 578875 3444566678899999999999998776431 1 11111 468999999999997532 12223344
Q ss_pred HHHhCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 147 AREYGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 147 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
....+++++.+||+++.|++++++.+.+.+.
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 4456789999999999999999998887765
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.48 E-value=3.7e-07 Score=73.57 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=50.7
Q ss_pred EEEEEEeCCCccccccchh------hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+.+.|+||+|......... .....+|.+++|+|+......... ...+.. . -.+..||.||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~---~-~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKE---A-TPIGSIIVTKLDGSAK 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHH---S-CTTEEEEEECCSSCSS
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHh---h-CCCeEEEEECCCCccc
Confidence 5688999999543222111 112357999999998865432222 122222 1 1344689999998533
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
. ..+.......+.|+.+++.
T Consensus 255 g----G~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 G----GGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp H----HHHHHHHHTTCCCEEEEEC
T ss_pred c----cHHHHHHHHHCCCEEEEEc
Confidence 2 2344555667888877775
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.33 E-value=4e-07 Score=70.15 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=62.1
Q ss_pred cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCcE
Q 028329 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLF 154 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~ 154 (210)
.+.+..+.++|.+++|+|+.++..-......++.... ..++|.++|+||+|+..... ...+.........+.++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445568899999999999987654444332333322 35688899999999976533 11234455556678899
Q ss_pred EEEccCCCCCHHHHHH
Q 028329 155 IECSAKTRVNVQQCFE 170 (210)
Q Consensus 155 ~~~sa~~~~~i~~~~~ 170 (210)
+.+|+.++.|++++++
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999998888776554
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.32 E-value=3.6e-07 Score=68.99 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=61.9
Q ss_pred CCCccccc-cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028329 69 TAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA 147 (210)
Q Consensus 69 ~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~ 147 (210)
.||+.... ......+.++|+++.|+|+.++.+..... +. .. ++|.++|+||+|+..... .+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~-ll---~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VD-FS---RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SC-CT---TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HH-hc---CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 46664332 35566788999999999999887654321 11 11 689999999999975321 22234445
Q ss_pred HHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 148 REYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 148 ~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
...+.++ .+||+++.|++++++.+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 5667888 9999999999998877644
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.27 E-value=1.2e-06 Score=73.19 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=40.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYV--DV-GGKKLKLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~ 74 (210)
...++|+|+|.||||||||+|+|++.... .... +.+.+.....+ .+ ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 46789999999999999999999987632 2222 22222222211 11 12234688899999643
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.14 E-value=1.9e-06 Score=69.35 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCccc--cccc----hhhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 61 KLKLAIWDTAGQER--FRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 61 ~~~~~l~D~~g~~~--~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
.+.+.++||||... .... .... ....|.+++|+|+.......... ..+... -.+..||.||.|.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a----~~f~~~----~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA----SRFHQA----SPIGSVIITKMDG 250 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH----HHHHHH----CSSEEEEEECGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH----HHHhcc----cCCcEEEEecccc
Confidence 35678899999544 2211 1111 12468999999988654332222 222221 1345799999997
Q ss_pred CCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 133 ESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
... ...+.......+.|+.+++.
T Consensus 251 ~a~----~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 251 TAK----GGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp CSC----HHHHHHHHHHHTCEEEEEEC
T ss_pred ccc----chHHHHHHHHHCCCEEEEEC
Confidence 532 23455566677999877776
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.04 E-value=1.3e-05 Score=64.73 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=48.8
Q ss_pred EEEEEEEeCCCccccccch----h--hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCC-c-EEEEEeCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-I-KLLVGNKVDK 132 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~D~ 132 (210)
.+.+.++||||........ . ..+..+|.+++|+|+..... ... ....+. ... | ..+|.||.|.
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH-----TTSCSCEEEEEECSSS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh-----hcccCCeEEEEeCCCC
Confidence 3568899999965432111 1 11236899999999876532 222 112222 124 4 7899999997
Q ss_pred CCCceecHHHHHHHHHHhCCcEEEEc
Q 028329 133 ESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (210)
.... ..+..+....+.++..++
T Consensus 251 ~~~~----g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 251 SAKG----GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp CSTT----HHHHHHHHHSSCCEEEEC
T ss_pred ccch----HHHHHHHHHHCCCEEEee
Confidence 5321 123445666777766653
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.04 E-value=3.7e-06 Score=64.56 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=53.3
Q ss_pred EEEEEEEeCCCccc--ccc-chh-----hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCC
Q 028329 61 KLKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVD 131 (210)
Q Consensus 61 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D 131 (210)
.+.+.++||||... ... +.. ..+..+|.+++|+|+.... .... ....+.. ..+ ..+|.||.|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh-----hCCCCEEEEeCCC
Confidence 34688999999765 221 111 1234689999999986432 2222 1222221 244 578999999
Q ss_pred CCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
.... ...+..+....+.++..++ .|.+++
T Consensus 251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 251 GTAK----GGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred CCcc----hHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 7432 2234566677788877766 344443
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.01 E-value=1.2e-05 Score=67.85 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~ 40 (210)
..|+|+|++|||||||++.+.+-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 34999999999999999999986433
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.90 E-value=1.2e-05 Score=62.47 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=46.8
Q ss_pred EEEEEeCCCccccccchhh------cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 63 KLAIWDTAGQERFRTLTSS------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
.+.++|++|.......... ..-..|-.++++|+.... .+.. ....+.. ..++ -++++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~---~~~i-t~iilTKlD~~a~- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNE---AVKI-DGIILTKLDADAR- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHH---HSCC-CEEEEECGGGCSC-
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHH---hcCC-CEEEEeCcCCccc-
Confidence 3567899986433221111 112468889999976543 2222 1222221 1222 3788999996322
Q ss_pred eecHHHHHHHHHHhCCcEEEEc
Q 028329 137 VVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~s 158 (210)
...+.......+.++..++
T Consensus 284 ---~G~~l~~~~~~~~pi~~i~ 302 (328)
T 3e70_C 284 ---GGAALSISYVIDAPILFVG 302 (328)
T ss_dssp ---CHHHHHHHHHHTCCEEEEE
T ss_pred ---hhHHHHHHHHHCCCEEEEe
Confidence 2235566777888877777
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.89 E-value=3.9e-05 Score=60.25 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=56.0
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCcEEEEcc
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa 159 (210)
..+.++|.+++|.+. ++..-......++..... .++|.+||+||+|+...... ..+.....+...|.+++.+|+
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence 346889999988665 455433333323333222 35777999999999754321 122233444567889999999
Q ss_pred CCCCCHHHHHHH
Q 028329 160 KTRVNVQQCFEE 171 (210)
Q Consensus 160 ~~~~~i~~~~~~ 171 (210)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999887653
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.88 E-value=4.7e-07 Score=74.05 Aligned_cols=101 Identities=15% Similarity=0.069 Sum_probs=56.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccch--------hh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLT--------SS 81 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~~ 81 (210)
...+.|+++|.+||||||+.++|.........++.............+......+||..|... ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999997542211112221110000001111112345788887632 22222 44
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhh
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL 114 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 114 (210)
++...++.++|+|.++. +.+.... |...++.
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~ 147 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ 147 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh
Confidence 45567888999999987 4444444 6666554
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.76 E-value=4.8e-05 Score=61.48 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....-|.|+|++++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4567899999999999999999985
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.54 E-value=4.8e-05 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.45 E-value=6.5e-05 Score=54.01 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=22.5
Q ss_pred ccccccceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
....+....--|+|+|++|||||||++.|...
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 33344444556889999999999999999854
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.44 E-value=0.00053 Score=55.33 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=45.6
Q ss_pred EEEEEEEeCCCcccccc-chh-----hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028329 61 KLKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~ 133 (210)
.+.+.|+||||...... ... ..+..++.+++|+|+...... .. ....+.. ..+ .-+|.||.|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~-~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---AN-TAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HH-HHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HH-HHHHHhc-----cCCCeEEEEecCCCC
Confidence 35688999999654322 111 113368899999998754322 22 1122221 133 24799999974
Q ss_pred CCceecHHHHHHHHHHhCCcEEEE
Q 028329 134 SERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
... ..+..+....+.++..+
T Consensus 254 ~~~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 254 ARG----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp SCC----THHHHHHHHHCCCEEEE
T ss_pred ccH----HHHHHHHHHHCCCeEEE
Confidence 322 13344555566664333
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=7.2e-05 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.40 E-value=8.1e-05 Score=53.58 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999763
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.38 E-value=0.00015 Score=56.89 Aligned_cols=24 Identities=42% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
.++++|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 588999999999999999997654
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=4.7e-05 Score=58.63 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998754
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.31 E-value=0.00011 Score=52.23 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999854
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.31 E-value=0.00012 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.|+++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.31 E-value=0.00012 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.00059 Score=52.41 Aligned_cols=24 Identities=46% Similarity=0.647 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
-.++++|++|||||||+|.|. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 357899999999999999999 543
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.27 E-value=0.00014 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
=-++++|++|||||||++.+.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999998653
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.26 E-value=0.00014 Score=51.05 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028329 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~ 35 (210)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999754
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.26 E-value=0.00014 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999998653
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.24 E-value=0.0011 Score=53.38 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=47.4
Q ss_pred EEEEEEeCCCcccccc-chh-----hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+.+.++||||...... ... ...-.+|.+++|+|+.... .... ....+.. ..+ ..-||.||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~-~a~~f~~---~l~-i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALS-VARAFDE---KVG-VTGLVLTKLDGDAR 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHH---HTC-CCEEEEESGGGCSS
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHH-HHHHHHh---cCC-ceEEEEeCcCCccc
Confidence 4688999999654321 111 1122588899999986432 2222 1122221 112 24578899996432
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
. ..+..+....+.++.++..
T Consensus 253 ~----g~alsi~~~~g~PI~flg~ 272 (425)
T 2ffh_A 253 G----GAALSARHVTGKPIYFAGV 272 (425)
T ss_dssp C----HHHHHHHHHHCCCEEEEEC
T ss_pred H----HHHHHHHHHHCCCEEEEeC
Confidence 1 2345566677888666553
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.23 E-value=0.00016 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
-.++|+|++|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999998743
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.18 E-value=0.00017 Score=52.16 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998754
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.18 E-value=0.0002 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999754
No 254
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.17 E-value=0.00021 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
=.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999998754
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.17 E-value=0.00023 Score=50.71 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.16 E-value=0.00021 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
-|+++|++|||||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999998653
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.13 E-value=0.00024 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.10 E-value=0.00027 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..|+++|++||||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.09 E-value=0.00029 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
....|+++|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998753
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.09 E-value=0.00029 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.08 E-value=0.0003 Score=50.68 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999753
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.07 E-value=0.00028 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.07 E-value=0.00028 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998654
No 264
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.07 E-value=0.00031 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999753
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.07 E-value=0.00031 Score=48.87 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 028329 16 KLLMIGDSGVGKSSLLLSF 34 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l 34 (210)
.|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.06 E-value=0.00031 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.06 E-value=0.00034 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 268
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.06 E-value=0.00033 Score=50.30 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=22.8
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
........|+|.|.+||||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445567899999999999999999864
No 269
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.05 E-value=0.00032 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999754
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.04 E-value=0.00038 Score=51.71 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028329 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~ 35 (210)
-.|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.04 E-value=0.00033 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
-.|+++|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 272
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.03 E-value=0.00038 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.03 E-value=0.00042 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.03 E-value=0.00038 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.03 E-value=0.00034 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.02 E-value=0.00038 Score=48.40 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.02 E-value=0.00036 Score=52.64 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999754
No 278
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.01 E-value=0.00037 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999753
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.01 E-value=0.00041 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00034 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999988753
No 281
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.00 E-value=0.00038 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.00 E-value=0.00039 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 283
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.99 E-value=0.00044 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999754
No 284
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.97 E-value=0.00042 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 285
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.97 E-value=0.00046 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999975
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.97 E-value=0.00044 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-|++.|.+||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 287
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.96 E-value=0.00034 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 288
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.96 E-value=0.00047 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.96 E-value=0.00048 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
-.|+++|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.95 E-value=0.00048 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 291
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.95 E-value=0.0005 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 292
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.94 E-value=0.00045 Score=50.12 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.94 E-value=0.00054 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.94 E-value=0.00045 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
=.++|+|++|+|||||++.|.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999999864
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.92 E-value=0.00046 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|+|+|.+||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 296
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.92 E-value=0.00062 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999976
No 297
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=0.00059 Score=52.39 Aligned_cols=25 Identities=44% Similarity=0.348 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~ 40 (210)
.++++|++|||||||++.|.+...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 5789999999999999999976543
No 298
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.92 E-value=0.00048 Score=49.98 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.92 E-value=0.00065 Score=48.74 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
......|+|.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998863
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.92 E-value=0.00034 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.91 E-value=0.00055 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 302
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.91 E-value=0.00046 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
=.++++|++|||||||++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999998753
No 303
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.90 E-value=0.00055 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998754
No 304
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.90 E-value=0.0005 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.+|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.89 E-value=0.00054 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..++++|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999854
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.89 E-value=0.00059 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999764
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.88 E-value=0.00052 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...|+++|++||||||+++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 308
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.88 E-value=0.00065 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.....-|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 455678999999999999999998864
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.88 E-value=0.00065 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|+|.|.+||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 310
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.87 E-value=0.00059 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
+|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.87 E-value=0.00076 Score=48.61 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
......|+++|++||||||+++.|...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345578999999999999999999864
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.86 E-value=0.00034 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=15.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHh-cC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFT-SD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~-~~ 37 (210)
--++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358899999999999999999 64
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00063 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|+++|++||||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 314
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.85 E-value=0.00085 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 315
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.84 E-value=0.00063 Score=50.32 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028329 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~ 35 (210)
-++++|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999887
No 316
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.83 E-value=0.00062 Score=49.58 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.00058 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-++++|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.82 E-value=0.00035 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.+.|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 319
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.81 E-value=0.00075 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.81 E-value=0.00082 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...+|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999863
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.81 E-value=0.00079 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999874
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.80 E-value=0.0008 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 323
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.79 E-value=0.00068 Score=53.26 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
-++++|++|||||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 468999999999999999997643
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.78 E-value=0.00084 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|+|.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 325
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.78 E-value=0.00055 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++|+|++|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58899999999999999998653
No 326
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.77 E-value=0.00066 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.77 E-value=0.00079 Score=49.98 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....|+|+|++|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 328
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.77 E-value=0.00079 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998753
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.76 E-value=0.00095 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 330
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00072 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 331
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.75 E-value=0.00079 Score=48.83 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
+|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.74 E-value=0.00078 Score=47.16 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 333
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0025 Score=46.62 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=45.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEE-eCCC-ccccc-----cchhhcccC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIW-DTAG-QERFR-----TLTSSYYRG 85 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g-~~~~~-----~~~~~~~~~ 85 (210)
..+=|++-|.++.|||+|++++.+....... ........-.+-...+-|| |.-. ...+. .........
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~-----i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~v 102 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCSSTGIS-----IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNV 102 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCCCCSSC-----EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHT
T ss_pred CceEEEecCcccccHHHHHHHHhcccccccc-----cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHh
Confidence 3444555599999999999999977432211 1112222333334555555 5432 11111 111111223
Q ss_pred ccEEEEEEeCCCcccHHHH
Q 028329 86 AQGIIMVYDVTRRDTFTNL 104 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~ 104 (210)
.+++|+|++.......+.+
T Consensus 103 iggII~~f~~p~~~~~~~i 121 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQELL 121 (233)
T ss_dssp EEEEEEEECHHHHCGGGTH
T ss_pred cceEEEEEeCCCcchHHHH
Confidence 4889999986655544433
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.73 E-value=0.00081 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999754
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.72 E-value=0.001 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....+-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999998864
No 336
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.71 E-value=0.00087 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999998754
No 337
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.0009 Score=52.68 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999998754
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.001 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998754
No 339
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.70 E-value=0.00092 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46899999999999999999754
No 340
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.70 E-value=0.00091 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 46899999999999999999754
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.69 E-value=0.00088 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHh
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~ 35 (210)
...|+|.|.+||||||+++.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0012 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|++.|.+||||||+++.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 343
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.68 E-value=0.0009 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 344
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.68 E-value=0.001 Score=50.75 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....-|++.|++||||||+++.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999999964
No 345
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.0033 Score=42.50 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999998754
No 346
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.66 E-value=0.00097 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 46899999999999999999764
No 347
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.66 E-value=0.001 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998754
No 348
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.65 E-value=0.0012 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHh
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~ 35 (210)
......|+|+|++|||||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999998875
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.65 E-value=0.0012 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.64 E-value=0.00058 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.64 E-value=0.0011 Score=46.29 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...+.++|.+|||||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
No 352
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.64 E-value=0.0011 Score=46.63 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999999873
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.63 E-value=0.0012 Score=50.78 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999863
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.61 E-value=0.001 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998753
No 355
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.61 E-value=0.0012 Score=48.63 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....|+|.|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 356
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.61 E-value=0.00081 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999754
No 357
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.60 E-value=0.0014 Score=46.89 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
....|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999864
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.60 E-value=0.00089 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.60 E-value=0.0013 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=21.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999998864
No 360
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.59 E-value=0.0011 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999863
No 361
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.58 E-value=0.0013 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988643
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.57 E-value=0.0013 Score=48.04 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.56 E-value=0.0014 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.....|+++|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.55 E-value=0.0018 Score=47.29 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
--|+++|+|||||+|...+|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467789999999999998864
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.55 E-value=0.0012 Score=51.27 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.55 E-value=0.0019 Score=45.63 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....|++.|.+||||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999864
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.55 E-value=0.0017 Score=45.88 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.53 E-value=0.0012 Score=50.65 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=46.1
Q ss_pred EEEEEeCCCcccccc------------chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329 63 KLAIWDTAGQERFRT------------LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 130 (210)
.+.+.|++|...... ..+......+.+++++|+.......... ..+.. ..+. .++++||.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~----~~~~~---~~~~-t~iivTh~ 257 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA----KKFHE---AVGL-TGVIVTKL 257 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH----HHHHH---HHCC-SEEEEECT
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHH----HHHHH---HcCC-cEEEEECC
Confidence 356789998532221 1112334578888899977654332222 11211 1123 37889999
Q ss_pred CCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 131 DKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 131 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
|.... ...+.......+.++.++..
T Consensus 258 d~~a~----gg~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 258 DGTAK----GGVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp TSSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred ccccc----ccHHHHHHHHHCCCeEEEeC
Confidence 86422 22345566677888666653
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.53 E-value=0.0016 Score=46.29 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 370
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.53 E-value=0.0014 Score=48.92 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999863
No 371
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.52 E-value=0.0013 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.+.++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999864
No 372
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.52 E-value=0.0016 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 373
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.51 E-value=0.0013 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.51 E-value=0.0015 Score=45.40 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.51 E-value=0.0016 Score=48.54 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028329 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~ 35 (210)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.51 E-value=0.001 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
......|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.51 E-value=0.0013 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
-.++|+|++|||||||++.|.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999999643
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.50 E-value=0.0016 Score=46.52 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..|+|.|.+||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999999854
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.50 E-value=0.0014 Score=49.59 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0014 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..-.++++|++||||||+++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 381
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.48 E-value=0.00081 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999754
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.48 E-value=0.0018 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.47 E-value=0.0016 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.47 E-value=0.00068 Score=48.97 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.46 E-value=0.0015 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.++|+|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999753
No 386
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.45 E-value=0.0017 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 387
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.44 E-value=0.0019 Score=45.76 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.0018 Score=46.64 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 389
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.43 E-value=0.0082 Score=48.49 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=40.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHh-------c-----------CCCC---CCCC-CceeeeEEEEEEE---CCeEEEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFT-------S-----------DNFE---ELSP-TIGVDFKVKYVDV---GGKKLKLAI 66 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~-------~-----------~~~~---~~~~-~~~~~~~~~~~~~---~~~~~~~~l 66 (210)
....-|.|+|..++|||+|+|.|+ + ..|. ...+ |.|.......+.+ ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 356777899999999999999554 1 1221 1112 5554443322222 667788999
Q ss_pred EeCCCccc
Q 028329 67 WDTAGQER 74 (210)
Q Consensus 67 ~D~~g~~~ 74 (210)
+||.|...
T Consensus 145 lDTEG~~d 152 (457)
T 4ido_A 145 MDTQGTFD 152 (457)
T ss_dssp EEECCBTC
T ss_pred EeccCCCC
Confidence 99999543
No 390
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.0016 Score=46.93 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 391
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.43 E-value=0.0021 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.41 E-value=0.001 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=16.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999863
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.41 E-value=0.0017 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-++++|++|+|||||++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999998743
No 394
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.40 E-value=0.0015 Score=48.05 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
....-|+|.|..||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999865
No 395
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0018 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..+++.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999753
No 396
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.39 E-value=0.0022 Score=44.44 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 397
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0015 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.++|+|++|||||||++.|++-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999999864
No 398
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.37 E-value=0.0017 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++|+|++|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.37 E-value=0.0021 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|++.|.+||||||+++.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 400
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.37 E-value=0.002 Score=45.23 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-.+|+|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999864
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.36 E-value=0.0018 Score=53.32 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++|+|++||||||+++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998643
No 402
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.32 E-value=0.0035 Score=42.46 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
...|++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999998643
No 403
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.31 E-value=0.0018 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999888643
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.30 E-value=0.0022 Score=45.87 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988753
No 405
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.29 E-value=0.0026 Score=48.24 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~ 35 (210)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999986
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.28 E-value=0.0023 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..+.|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999863
No 407
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.27 E-value=0.0023 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
=++.++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 408
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.27 E-value=0.0027 Score=46.40 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998874
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.24 E-value=0.0022 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0023 Score=47.71 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0024 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..-.++++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999998864
No 412
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.23 E-value=0.0016 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
--++|+|+.|||||||++.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 356889999999999999999653
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.20 E-value=0.0021 Score=48.17 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..+...|+|.|..||||||+++.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999874
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.19 E-value=0.0025 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..-.|+|+|.+|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345788999999999999998864
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.18 E-value=0.0027 Score=46.62 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999864
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.18 E-value=0.0028 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|.+||||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998864
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.17 E-value=0.0028 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 418
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.15 E-value=0.0037 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 419
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0049 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.12 E-value=0.0032 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.11 E-value=0.0034 Score=46.14 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...-|++.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467899999999999999998753
No 422
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.10 E-value=0.003 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999863
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.08 E-value=0.0032 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
...|++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999975
No 424
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.08 E-value=0.0031 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999754
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.06 E-value=0.004 Score=42.49 Aligned_cols=19 Identities=53% Similarity=0.711 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028329 17 LLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~ 35 (210)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999998875
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.05 E-value=0.0032 Score=49.83 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999999985
No 427
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.04 E-value=0.0032 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
=.++|+|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999864
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.04 E-value=0.0029 Score=45.59 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888864
No 429
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.03 E-value=0.0036 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=20.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.+.-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999999754
No 430
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.02 E-value=0.0039 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998874
No 431
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.02 E-value=0.0036 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998764
No 432
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0046 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
-++++|++|||||||++.|.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999997543
No 433
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.01 E-value=0.0034 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999999864
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.00 E-value=0.004 Score=45.30 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 435
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.97 E-value=0.005 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998754
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0053 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
.++++|++|+|||||++.|.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 588999999999999999987543
No 437
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.92 E-value=0.0059 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998754
No 438
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.91 E-value=0.004 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998753
No 439
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.87 E-value=0.0072 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
.++++|++|+|||||++.+.+...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.85 E-value=0.0056 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...-|+++|.+||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456888999999999999999753
No 441
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.83 E-value=0.0053 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=19.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986653
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.83 E-value=0.0045 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999998874
No 443
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.83 E-value=0.0074 Score=45.32 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999999764
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.0054 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
.++++|++|||||||++.+.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999997543
No 445
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.80 E-value=0.0059 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..++.++|+|||||||+..+|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 47899999999999999998853
No 446
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.79 E-value=0.0056 Score=50.81 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
.++++|++|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999997643
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.77 E-value=0.0062 Score=43.54 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 448
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.75 E-value=0.0057 Score=46.58 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998753
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.75 E-value=0.0059 Score=51.40 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
.++++|++|+|||||++.|.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999997643
No 450
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.0053 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+--|++.|+||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999854
No 451
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0055 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.+--|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 452
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.72 E-value=0.0038 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999999754
No 453
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.71 E-value=0.006 Score=48.10 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028329 17 LLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~ 35 (210)
.+|+|+.|||||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999886
No 454
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.70 E-value=0.0052 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 67899999999999999988654
No 455
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.0045 Score=48.24 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 028329 17 LLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~ 36 (210)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.69 E-value=0.0063 Score=44.74 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.....|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 457
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.0056 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.|++.|+||+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56999999999999999999854
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.69 E-value=0.0057 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998754
No 459
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.65 E-value=0.0066 Score=44.60 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877653
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.65 E-value=0.0058 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
No 461
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0061 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+--|++.|+||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999864
No 462
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.0059 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 463
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.62 E-value=0.0067 Score=46.37 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=47.3
Q ss_pred EEEEEEEeCCCccccccc----hhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTL----TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.+.+.++||+|....... ....+. ..+.+++|+|++.. ...+.. +...+. ..+. .-+|.||.|...
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~~~~~~----~l~~-~giVltk~D~~~ 253 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-IVKRFS----SVPV-NQYIFTKIDETT 253 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-HTTTTS----SSCC-CEEEEECTTTCS
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-HHHHHh----cCCC-CEEEEeCCCccc
Confidence 346889999996543321 112222 36788999987743 222222 222221 1222 246679999753
Q ss_pred CceecHHHHHHHHHHhCCcEEEEc
Q 028329 135 ERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~s 158 (210)
. ...+.......++++..++
T Consensus 254 ~----~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 S----LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp C----CHHHHHHHHTCSCCCSEEC
T ss_pred c----hhHHHHHHHHHCcCEEEEE
Confidence 2 2245666677788765544
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.61 E-value=0.006 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998654
No 465
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.61 E-value=0.0062 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...|++.|+||+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999754
No 466
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.59 E-value=0.0077 Score=42.46 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
++|+|.++||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 467
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.59 E-value=0.0052 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999998653
No 468
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.0068 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
++++|++|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999997654
No 469
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0067 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+--|++.|+||+|||+|++.+.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 456999999999999999999864
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.52 E-value=0.0071 Score=47.58 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 471
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.51 E-value=0.0077 Score=43.18 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..|+|+|++|+|||+|+..|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999854
No 472
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.50 E-value=0.0032 Score=47.13 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999875
No 473
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.48 E-value=0.0072 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
--+.|+|++|+|||||+..++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999865
No 474
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.47 E-value=0.0095 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHh
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~ 35 (210)
..+|+++|++|+||||+.+.|.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999998765
No 475
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.46 E-value=0.008 Score=46.18 Aligned_cols=87 Identities=18% Similarity=0.139 Sum_probs=47.8
Q ss_pred EEEEEEeCCCccccccch-------hhc-----ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 62 LKLAIWDTAGQERFRTLT-------SSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
+.+.++|+||........ ... -...+.+++|+|+... ...+.. . ..+.. ..++ .-+|.||
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a-~~~~~---~~~i-~gvVlTk 258 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-A-KIFKE---AVNV-TGIILTK 258 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-H-HHHHH---HSCC-CEEEEEC
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-H-HHHHh---cCCC-CEEEEeC
Confidence 357889999953322111 111 1247889999998632 122221 2 12221 1222 2577899
Q ss_pred CCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329 130 VDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 130 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
.|.... ...+..+....+.|+.++..-
T Consensus 259 ~D~~~~----gG~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 259 LDGTAK----GGITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp GGGCSC----TTHHHHHHHHHCCCEEEEECS
T ss_pred CCCccc----hHHHHHHHHHHCCCEEEEeCC
Confidence 996322 223667777889887776553
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.46 E-value=0.042 Score=39.03 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=54.4
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecH
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~ 140 (210)
+.+.++|+|+.. .......+..+|.+++++..+... ..+.. +...+..... ..+.++.+|.|+.|... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAG-SVVTVLEAQAYSRKVEARFLITRKIEMA--T-ML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHH-HHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHH-HHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HH
Confidence 568899999865 334455667799999999987654 44444 5555543211 33567789999998532 1 22
Q ss_pred HHHHHHHHHhCCcEE
Q 028329 141 KEGINFAREYGCLFI 155 (210)
Q Consensus 141 ~~~~~~~~~~~~~~~ 155 (210)
.+........+.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 344555556666554
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.45 E-value=0.0087 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.44 E-value=0.0086 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 479
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.0079 Score=46.72 Aligned_cols=21 Identities=38% Similarity=0.762 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 480
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.41 E-value=0.0097 Score=45.73 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988874
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.41 E-value=0.0083 Score=47.00 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998743
No 482
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.41 E-value=0.013 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
..|++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 568999999999999999998643
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.35 E-value=0.0095 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
.++++|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999997643
No 484
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.34 E-value=0.0064 Score=50.58 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=21.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
....|+|+|.+|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467999999999999999999754
No 485
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.33 E-value=0.011 Score=42.56 Aligned_cols=19 Identities=53% Similarity=0.711 Sum_probs=16.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028329 17 LLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~ 35 (210)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4677999999999998774
No 486
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.33 E-value=0.0096 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999854
No 487
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.32 E-value=0.0084 Score=49.82 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
No 488
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.32 E-value=0.0086 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 489
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.31 E-value=0.0087 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.29 E-value=0.011 Score=41.35 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.-|++.|++|+||||+...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999998864
No 491
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.29 E-value=0.0098 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..|++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999654
No 492
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.28 E-value=0.01 Score=46.79 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998753
No 493
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.28 E-value=0.0088 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.-.++|.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
No 494
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.0095 Score=47.78 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.--|++.|+||+|||+|++++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 456999999999999999999864
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.27 E-value=0.0095 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-|+++|+||+|||+|++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999863
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.27 E-value=0.0065 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++|+|++|+|||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.26 E-value=0.011 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...|++.|+||+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 498
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.013 Score=43.08 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
..|++-|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999874
No 500
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.17 E-value=0.01 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-.++++|+||+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999988643
Done!