Query 028332
Match_columns 210
No_of_seqs 261 out of 1734
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3029 Glutathione S-transfer 99.8 5.2E-21 1.1E-25 161.4 9.7 120 86-205 89-246 (370)
2 KOG0406 Glutathione S-transfer 99.8 9.8E-20 2.1E-24 151.6 12.9 112 85-196 7-123 (231)
3 PRK09481 sspA stringent starva 99.8 7.7E-19 1.7E-23 144.9 12.3 103 86-188 9-114 (211)
4 PF13417 GST_N_3: Glutathione 99.8 1.8E-18 3.9E-23 120.5 8.9 72 90-161 1-74 (75)
5 cd03040 GST_N_mPGES2 GST_N fam 99.8 2.6E-18 5.5E-23 119.9 9.4 73 87-159 1-77 (77)
6 cd03055 GST_N_Omega GST_N fami 99.8 3.2E-18 7E-23 123.3 9.9 85 71-155 2-89 (89)
7 PRK15113 glutathione S-transfe 99.8 4.7E-18 1E-22 140.5 11.7 101 86-186 4-115 (214)
8 cd03041 GST_N_2GST_N GST_N fam 99.8 4.2E-18 9E-23 119.4 9.2 72 87-158 1-77 (77)
9 PRK10387 glutaredoxin 2; Provi 99.7 2E-17 4.3E-22 135.6 11.8 100 88-189 1-102 (210)
10 cd03059 GST_N_SspA GST_N famil 99.7 1.4E-17 3.1E-22 114.5 9.0 71 88-158 1-73 (73)
11 KOG0868 Glutathione S-transfer 99.7 1E-17 2.3E-22 133.3 9.4 119 86-204 4-161 (217)
12 cd03037 GST_N_GRX2 GST_N famil 99.7 2E-17 4.3E-22 113.8 8.3 69 88-156 1-71 (71)
13 PLN02473 glutathione S-transfe 99.7 4.6E-17 1E-21 134.0 11.6 100 87-186 2-109 (214)
14 cd03058 GST_N_Tau GST_N family 99.7 4.3E-17 9.2E-22 113.0 8.9 71 88-158 1-74 (74)
15 cd03045 GST_N_Delta_Epsilon GS 99.7 3.9E-17 8.4E-22 112.8 8.2 69 88-156 1-74 (74)
16 COG0625 Gst Glutathione S-tran 99.7 7E-17 1.5E-21 132.9 11.0 104 88-191 1-113 (211)
17 cd03061 GST_N_CLIC GST_N famil 99.7 4.6E-17 9.9E-22 118.0 8.7 70 93-162 19-90 (91)
18 cd03052 GST_N_GDAP1 GST_N fami 99.7 4.1E-17 9E-22 113.4 7.8 68 88-155 1-73 (73)
19 PRK13972 GSH-dependent disulfi 99.7 7.4E-17 1.6E-21 133.2 10.2 100 87-188 1-112 (215)
20 TIGR02182 GRXB Glutaredoxin, G 99.7 1.3E-16 2.8E-21 131.7 11.3 99 89-189 1-101 (209)
21 cd03060 GST_N_Omega_like GST_N 99.7 1.4E-16 3.1E-21 109.6 8.5 66 89-154 2-70 (71)
22 cd03080 GST_N_Metaxin_like GST 99.7 1.8E-16 3.9E-21 110.4 8.9 68 87-159 1-75 (75)
23 PRK10357 putative glutathione 99.7 4.8E-16 1E-20 126.9 10.8 100 88-187 1-104 (202)
24 cd03050 GST_N_Theta GST_N fami 99.7 4.1E-16 8.8E-21 108.5 8.8 71 88-158 1-76 (76)
25 cd03048 GST_N_Ure2p_like GST_N 99.7 4.8E-16 1E-20 109.5 9.0 73 87-160 1-81 (81)
26 cd03056 GST_N_4 GST_N family, 99.7 3.7E-16 8.1E-21 107.2 8.1 68 88-155 1-73 (73)
27 cd03053 GST_N_Phi GST_N family 99.7 5E-16 1.1E-20 107.8 8.9 70 88-157 2-76 (76)
28 cd03076 GST_N_Pi GST_N family, 99.7 4.7E-16 1E-20 107.8 7.9 70 87-156 1-72 (73)
29 cd03051 GST_N_GTT2_like GST_N 99.7 4.3E-16 9.4E-21 106.9 7.4 68 88-155 1-74 (74)
30 cd03039 GST_N_Sigma_like GST_N 99.6 5.9E-16 1.3E-20 106.6 7.4 69 88-156 1-72 (72)
31 PLN02395 glutathione S-transfe 99.6 2.2E-15 4.8E-20 123.9 11.9 98 87-185 2-107 (215)
32 PRK10542 glutathionine S-trans 99.6 1.9E-15 4.1E-20 123.0 9.9 102 88-190 1-111 (201)
33 cd03049 GST_N_3 GST_N family, 99.6 1.2E-15 2.5E-20 105.3 7.2 68 88-155 1-73 (73)
34 COG2999 GrxB Glutaredoxin 2 [P 99.6 9.5E-16 2.1E-20 122.0 7.1 108 88-197 1-110 (215)
35 cd03057 GST_N_Beta GST_N famil 99.6 3.1E-15 6.7E-20 104.2 8.7 71 88-159 1-77 (77)
36 TIGR01262 maiA maleylacetoacet 99.6 2.2E-15 4.7E-20 123.4 8.9 96 89-184 1-103 (210)
37 cd03047 GST_N_2 GST_N family, 99.6 3.2E-15 6.9E-20 103.3 8.0 68 88-155 1-73 (73)
38 cd03044 GST_N_EF1Bgamma GST_N 99.6 3.4E-15 7.3E-20 103.9 8.1 68 89-156 2-74 (75)
39 cd03038 GST_N_etherase_LigE GS 99.6 3.1E-15 6.6E-20 106.2 7.9 66 94-159 14-84 (84)
40 PRK11752 putative S-transferas 99.6 4.8E-15 1E-19 126.8 10.3 98 84-183 41-153 (264)
41 cd03042 GST_N_Zeta GST_N famil 99.6 4.4E-15 9.5E-20 101.9 8.0 68 88-155 1-73 (73)
42 cd03046 GST_N_GTT1_like GST_N 99.6 6.7E-15 1.5E-19 101.9 8.9 71 88-159 1-76 (76)
43 cd00570 GST_N_family Glutathio 99.6 8.2E-15 1.8E-19 97.9 7.9 68 88-155 1-71 (71)
44 PLN02378 glutathione S-transfe 99.6 9.7E-15 2.1E-19 120.8 9.9 71 92-162 16-88 (213)
45 cd03054 GST_N_Metaxin GST_N fa 99.6 1.1E-14 2.4E-19 100.3 8.5 65 88-157 1-72 (72)
46 TIGR00862 O-ClC intracellular 99.6 3.1E-14 6.8E-19 120.1 12.2 69 93-161 16-86 (236)
47 PF13409 GST_N_2: Glutathione 99.6 1.2E-14 2.6E-19 100.1 7.7 63 95-157 1-70 (70)
48 cd03077 GST_N_Alpha GST_N fami 99.6 2.8E-14 6.1E-19 100.5 9.5 70 88-159 2-77 (79)
49 cd03075 GST_N_Mu GST_N family, 99.5 3.6E-14 7.8E-19 100.7 8.8 70 89-158 2-82 (82)
50 KOG0867 Glutathione S-transfer 99.5 2.7E-14 5.8E-19 119.7 8.5 100 87-187 2-110 (226)
51 TIGR02190 GlrX-dom Glutaredoxi 99.5 7.9E-14 1.7E-18 98.2 9.6 73 83-155 5-79 (79)
52 PLN02817 glutathione dehydroge 99.5 3.5E-14 7.5E-19 121.8 9.0 83 93-176 70-154 (265)
53 PTZ00057 glutathione s-transfe 99.5 1.9E-13 4.1E-18 112.3 11.9 91 86-180 3-101 (205)
54 PF02798 GST_N: Glutathione S- 99.5 2E-13 4.4E-18 95.4 9.4 69 88-156 1-76 (76)
55 cd03043 GST_N_1 GST_N family, 99.4 5.1E-13 1.1E-17 92.6 8.6 64 92-155 6-73 (73)
56 cd03029 GRX_hybridPRX5 Glutare 99.4 1.5E-12 3.3E-17 89.7 9.1 69 87-155 2-72 (72)
57 KOG1695 Glutathione S-transfer 99.4 4.8E-12 1.1E-16 104.5 11.7 98 87-190 3-102 (206)
58 KOG4244 Failed axon connection 99.4 3.5E-12 7.6E-17 107.4 10.7 110 81-196 39-155 (281)
59 PRK10638 glutaredoxin 3; Provi 99.3 7.9E-12 1.7E-16 88.6 9.3 70 87-156 3-75 (83)
60 cd03079 GST_N_Metaxin2 GST_N f 99.3 4.7E-12 1E-16 88.3 7.4 60 94-157 15-74 (74)
61 TIGR02189 GlrX-like_plant Glut 99.3 3.8E-11 8.2E-16 88.3 9.5 74 82-155 4-83 (99)
62 cd03027 GRX_DEP Glutaredoxin ( 99.3 3.6E-11 7.8E-16 83.1 8.8 66 87-152 2-70 (73)
63 TIGR02183 GRXA Glutaredoxin, G 99.2 8.9E-11 1.9E-15 84.0 9.0 72 88-159 2-83 (86)
64 COG0695 GrxC Glutaredoxin and 99.2 9.5E-11 2.1E-15 82.9 8.9 70 87-156 2-76 (80)
65 PRK11200 grxA glutaredoxin 1; 99.2 1.6E-10 3.5E-15 82.2 9.5 73 87-159 2-84 (85)
66 cd03418 GRX_GRXb_1_3_like Glut 99.2 1.9E-10 4.1E-15 79.3 8.9 69 87-155 1-73 (75)
67 TIGR00365 monothiol glutaredox 99.2 1.1E-10 2.5E-15 85.5 8.1 73 83-155 9-89 (97)
68 PHA03050 glutaredoxin; Provisi 99.2 1.6E-10 3.5E-15 86.3 9.0 70 83-152 10-88 (108)
69 cd02066 GRX_family Glutaredoxi 99.2 2.3E-10 5E-15 77.0 8.9 67 87-153 1-70 (72)
70 cd03078 GST_N_Metaxin1_like GS 99.2 2.3E-10 5.1E-15 79.5 8.6 57 96-157 16-72 (73)
71 KOG4420 Uncharacterized conser 99.1 1.2E-10 2.5E-15 98.1 6.6 78 84-161 23-105 (325)
72 cd03028 GRX_PICOT_like Glutare 99.1 7.8E-10 1.7E-14 79.7 9.2 73 83-155 5-85 (90)
73 PRK10329 glutaredoxin-like pro 99.1 6.2E-10 1.3E-14 78.9 8.1 61 87-147 2-64 (81)
74 TIGR02181 GRX_bact Glutaredoxi 99.1 7.5E-10 1.6E-14 77.4 8.3 69 88-156 1-72 (79)
75 PRK10824 glutaredoxin-4; Provi 99.1 5.7E-10 1.2E-14 84.2 7.5 73 83-155 12-92 (115)
76 TIGR02196 GlrX_YruB Glutaredox 99.0 1.5E-09 3.2E-14 73.5 8.5 68 87-154 1-73 (74)
77 cd03419 GRX_GRXh_1_2_like Glut 99.0 2.5E-09 5.5E-14 74.7 9.1 70 87-156 1-76 (82)
78 TIGR02194 GlrX_NrdH Glutaredox 99.0 1.7E-09 3.6E-14 74.6 7.2 58 88-145 1-61 (72)
79 PF00462 Glutaredoxin: Glutare 99.0 1E-09 2.3E-14 72.8 5.8 57 88-144 1-60 (60)
80 KOG1752 Glutaredoxin and relat 98.9 5.8E-09 1.3E-13 77.3 8.8 74 82-155 10-89 (104)
81 TIGR02180 GRX_euk Glutaredoxin 98.9 6.6E-09 1.4E-13 72.7 8.5 69 88-156 1-77 (84)
82 KOG1422 Intracellular Cl- chan 98.9 3.9E-09 8.5E-14 86.4 8.1 71 94-164 19-91 (221)
83 cd02976 NrdH NrdH-redoxin (Nrd 98.9 6.1E-09 1.3E-13 70.4 7.8 61 87-147 1-64 (73)
84 TIGR02200 GlrX_actino Glutared 98.9 1.5E-08 3.2E-13 69.6 8.2 69 87-155 1-76 (77)
85 PLN02907 glutamate-tRNA ligase 98.7 6.7E-08 1.5E-12 93.1 9.6 84 88-182 3-88 (722)
86 PTZ00062 glutaredoxin; Provisi 98.7 9.4E-08 2E-12 79.1 8.9 75 81-155 108-190 (204)
87 cd03031 GRX_GRX_like Glutaredo 98.6 4.4E-07 9.4E-12 71.4 9.0 68 87-154 1-81 (147)
88 PRK12759 bifunctional gluaredo 98.5 4.1E-07 8.8E-12 82.7 8.9 66 87-152 3-79 (410)
89 COG0278 Glutaredoxin-related p 98.5 3.3E-07 7.2E-12 66.8 6.2 74 82-155 11-93 (105)
90 cd02973 TRX_GRX_like Thioredox 98.2 8.2E-06 1.8E-10 54.8 6.6 58 87-146 2-65 (67)
91 PF10568 Tom37: Outer mitochon 97.9 7.1E-05 1.5E-09 51.8 7.4 55 96-155 14-72 (72)
92 KOG0911 Glutaredoxin-related p 97.9 2.9E-05 6.3E-10 64.5 6.1 74 83-156 136-217 (227)
93 cd03036 ArsC_like Arsenate Red 97.9 1.6E-05 3.5E-10 59.4 4.2 39 88-126 1-41 (111)
94 cd03030 GRX_SH3BGR Glutaredoxi 97.8 0.00014 2.9E-09 52.8 8.1 66 88-153 2-80 (92)
95 PRK01655 spxA transcriptional 97.8 3.4E-05 7.3E-10 59.5 5.1 33 87-119 1-33 (131)
96 cd03032 ArsC_Spx Arsenate Redu 97.8 4.9E-05 1.1E-09 57.1 5.4 33 87-119 1-33 (115)
97 cd02977 ArsC_family Arsenate R 97.8 5.7E-05 1.2E-09 55.6 5.3 32 88-119 1-32 (105)
98 PRK12559 transcriptional regul 97.7 8.5E-05 1.8E-09 57.3 5.8 39 87-125 1-41 (131)
99 TIGR00412 redox_disulf_2 small 97.7 0.00024 5.2E-09 49.3 7.6 55 88-145 3-61 (76)
100 PRK13344 spxA transcriptional 97.7 9.1E-05 2E-09 57.2 5.6 39 87-125 1-41 (132)
101 cd03035 ArsC_Yffb Arsenate Red 97.6 0.00016 3.5E-09 53.6 5.3 40 88-127 1-42 (105)
102 PF05768 DUF836: Glutaredoxin- 97.5 0.00075 1.6E-08 47.4 8.3 55 87-141 1-57 (81)
103 cd03033 ArsC_15kD Arsenate Red 97.5 0.00022 4.8E-09 53.6 5.5 40 87-126 1-42 (113)
104 KOG3027 Mitochondrial outer me 97.5 0.00057 1.2E-08 56.4 8.0 86 97-187 35-121 (257)
105 TIGR01617 arsC_related transcr 97.5 0.00018 3.8E-09 54.2 4.6 32 88-119 1-32 (117)
106 TIGR00411 redox_disulf_1 small 97.5 0.0016 3.6E-08 44.7 9.2 56 87-142 2-62 (82)
107 COG1393 ArsC Arsenate reductas 97.3 0.00051 1.1E-08 52.0 5.7 39 87-125 2-42 (117)
108 TIGR01616 nitro_assoc nitrogen 97.3 0.00063 1.4E-08 52.1 5.7 39 87-125 2-42 (126)
109 PRK10853 putative reductase; P 97.3 0.0005 1.1E-08 52.1 5.1 40 87-126 1-42 (118)
110 PRK10026 arsenate reductase; P 97.2 0.00098 2.1E-08 52.1 5.8 40 86-125 2-43 (141)
111 PHA02125 thioredoxin-like prot 97.2 0.0015 3.3E-08 45.0 6.1 54 87-143 1-55 (75)
112 COG4545 Glutaredoxin-related p 97.0 0.0028 6.1E-08 44.0 6.1 57 89-145 5-77 (85)
113 cd03026 AhpF_NTD_C TRX-GRX-lik 97.0 0.0029 6.4E-08 45.3 6.4 57 87-145 15-77 (89)
114 cd03034 ArsC_ArsC Arsenate Red 96.9 0.002 4.3E-08 48.2 5.2 39 88-126 1-41 (112)
115 PF13192 Thioredoxin_3: Thiore 96.9 0.0082 1.8E-07 41.5 7.9 57 88-147 3-63 (76)
116 TIGR00014 arsC arsenate reduct 96.9 0.0022 4.7E-08 48.1 5.2 39 88-126 1-41 (114)
117 KOG3028 Translocase of outer m 96.8 0.02 4.4E-07 49.9 11.1 94 96-194 17-113 (313)
118 cd01659 TRX_superfamily Thiore 96.6 0.0069 1.5E-07 37.6 5.4 52 88-139 1-59 (69)
119 KOG2903 Predicted glutathione 96.2 0.013 2.7E-07 50.2 6.2 112 73-184 23-185 (319)
120 PF03960 ArsC: ArsC family; I 95.3 0.032 6.9E-07 41.3 4.4 35 91-125 1-37 (110)
121 PF04908 SH3BGR: SH3-binding, 95.1 0.11 2.3E-06 38.2 6.8 68 88-155 3-88 (99)
122 PF11287 DUF3088: Protein of u 94.9 0.15 3.3E-06 38.1 6.9 66 96-162 24-111 (112)
123 PF00085 Thioredoxin: Thioredo 94.5 0.54 1.2E-05 33.0 9.0 71 86-156 19-102 (103)
124 TIGR01295 PedC_BrcD bacterioci 94.4 0.24 5.3E-06 37.4 7.4 58 87-144 26-103 (122)
125 COG0435 ECM4 Predicted glutath 94.1 0.15 3.3E-06 44.0 6.1 99 84-182 48-185 (324)
126 cd02975 PfPDO_like_N Pyrococcu 93.9 0.15 3.3E-06 37.8 5.2 53 85-139 22-81 (113)
127 cd02947 TRX_family TRX family; 93.7 0.57 1.2E-05 31.5 7.6 56 86-143 12-75 (93)
128 cd02949 TRX_NTR TRX domain, no 93.5 0.48 1E-05 33.7 7.2 58 87-144 16-80 (97)
129 TIGR03143 AhpF_homolog putativ 92.8 0.36 7.9E-06 45.6 7.2 58 87-146 479-542 (555)
130 TIGR02187 GlrX_arch Glutaredox 92.6 0.54 1.2E-05 38.8 7.1 55 86-140 135-193 (215)
131 cd02984 TRX_PICOT TRX domain, 92.0 1.3 2.8E-05 31.0 7.7 59 86-144 16-81 (97)
132 TIGR03140 AhpF alkyl hydropero 91.7 0.28 6E-06 45.9 5.0 71 85-157 118-198 (515)
133 cd02959 ERp19 Endoplasmic reti 91.7 0.72 1.6E-05 34.4 6.3 58 87-144 22-90 (117)
134 cd02989 Phd_like_TxnDC9 Phosdu 91.5 1.2 2.7E-05 32.9 7.4 58 86-145 24-89 (113)
135 cd02963 TRX_DnaJ TRX domain, D 91.5 1.8 4E-05 31.6 8.3 58 87-144 27-92 (111)
136 PRK10996 thioredoxin 2; Provis 91.4 3 6.5E-05 31.9 9.8 58 87-144 55-119 (139)
137 PRK15317 alkyl hydroperoxide r 91.2 0.32 7E-06 45.4 4.8 72 85-158 117-198 (517)
138 PRK09381 trxA thioredoxin; Pro 90.9 3.3 7.2E-05 29.7 9.1 58 87-144 24-88 (109)
139 PTZ00051 thioredoxin; Provisio 90.6 1.8 3.9E-05 30.3 7.3 59 86-144 20-84 (98)
140 KOG2824 Glutaredoxin-related p 90.6 0.63 1.4E-05 40.1 5.6 69 85-153 130-211 (281)
141 TIGR02187 GlrX_arch Glutaredox 90.5 1.1 2.5E-05 36.8 7.0 74 85-158 20-111 (215)
142 TIGR01068 thioredoxin thioredo 90.5 4.2 9.1E-05 28.1 9.1 56 87-142 17-79 (101)
143 cd02954 DIM1 Dim1 family; Dim1 90.2 1.3 2.8E-05 33.3 6.4 58 87-144 17-81 (114)
144 cd02994 PDI_a_TMX PDIa family, 89.5 4.5 9.7E-05 28.5 8.7 56 87-142 19-82 (101)
145 cd02948 TRX_NDPK TRX domain, T 89.3 4.5 9.8E-05 28.9 8.7 58 87-144 20-84 (102)
146 cd02955 SSP411 TRX domain, SSP 89.2 1.8 3.9E-05 32.9 6.6 60 88-147 19-97 (124)
147 cd02956 ybbN ybbN protein fami 88.9 3.4 7.3E-05 28.8 7.6 57 87-143 15-78 (96)
148 PHA02278 thioredoxin-like prot 88.8 2.9 6.2E-05 30.6 7.3 58 87-144 17-85 (103)
149 cd02953 DsbDgamma DsbD gamma f 88.5 2 4.4E-05 30.6 6.3 53 86-139 13-78 (104)
150 cd02950 TxlA TRX-like protein 88.5 7.4 0.00016 29.9 9.8 73 87-159 23-111 (142)
151 cd02951 SoxW SoxW family; SoxW 87.8 2.5 5.4E-05 31.3 6.6 19 87-105 17-35 (125)
152 KOG0190 Protein disulfide isom 87.3 2.5 5.5E-05 39.5 7.5 90 73-162 29-136 (493)
153 cd02996 PDI_a_ERp44 PDIa famil 87.2 3 6.5E-05 30.0 6.6 56 87-142 21-89 (108)
154 PTZ00443 Thioredoxin domain-co 86.5 18 0.00039 30.3 12.9 75 87-161 55-142 (224)
155 COG3019 Predicted metal-bindin 85.7 5 0.00011 31.4 7.1 73 84-158 24-104 (149)
156 cd03003 PDI_a_ERdj5_N PDIa fam 85.1 4.8 0.0001 28.4 6.7 56 87-142 21-83 (101)
157 PHA03075 glutaredoxin-like pro 84.2 1.5 3.2E-05 33.1 3.6 68 84-156 1-68 (123)
158 PF06110 DUF953: Eukaryotic pr 83.9 2.3 4.9E-05 32.3 4.6 58 93-150 35-108 (119)
159 COG3011 Predicted thiol-disulf 83.9 10 0.00022 29.4 8.3 76 83-158 5-87 (137)
160 cd02962 TMX2 TMX2 family; comp 83.6 6.8 0.00015 30.8 7.4 58 88-145 51-122 (152)
161 cd02985 TRX_CDSP32 TRX family, 83.5 9 0.0002 27.4 7.6 58 87-144 18-84 (103)
162 cd02957 Phd_like Phosducin (Ph 82.9 4.2 9.1E-05 29.7 5.7 57 87-146 27-91 (113)
163 cd03004 PDI_a_ERdj5_C PDIa fam 82.6 3.9 8.4E-05 29.0 5.3 53 87-139 22-79 (104)
164 COG3118 Thioredoxin domain-con 82.4 8 0.00017 33.9 7.9 74 87-160 46-132 (304)
165 cd02997 PDI_a_PDIR PDIa family 81.5 9.3 0.0002 26.7 7.0 57 86-142 19-86 (104)
166 COG5494 Predicted thioredoxin/ 81.4 5 0.00011 33.6 6.0 71 86-156 11-86 (265)
167 cd02965 HyaE HyaE family; HyaE 80.6 3.7 8.1E-05 30.7 4.6 64 83-146 26-98 (111)
168 cd02993 PDI_a_APS_reductase PD 80.5 7.5 0.00016 28.1 6.3 53 86-138 23-83 (109)
169 cd02952 TRP14_like Human TRX-r 80.5 9.4 0.0002 28.8 6.9 53 94-146 38-105 (119)
170 PTZ00102 disulphide isomerase; 80.2 14 0.00031 33.6 9.4 76 86-161 51-141 (477)
171 KOG0910 Thioredoxin-like prote 80.0 7.6 0.00016 30.6 6.3 58 87-144 64-128 (150)
172 cd02961 PDI_a_family Protein D 79.9 11 0.00024 25.5 6.8 54 86-139 17-77 (101)
173 cd03005 PDI_a_ERp46 PDIa famil 79.2 9.1 0.0002 26.7 6.2 56 87-142 19-84 (102)
174 PRK11657 dsbG disulfide isomer 79.2 2.7 5.8E-05 35.8 3.9 34 85-118 118-155 (251)
175 PF13098 Thioredoxin_2: Thiore 78.1 2.8 6E-05 30.1 3.2 22 86-107 7-28 (112)
176 cd02987 Phd_like_Phd Phosducin 77.7 11 0.00023 30.2 6.9 58 88-146 87-150 (175)
177 KOG2501 Thioredoxin, nucleored 77.2 10 0.00022 30.1 6.4 39 83-121 31-77 (157)
178 cd03000 PDI_a_TMX3 PDIa family 77.2 13 0.00029 26.3 6.7 53 87-139 18-78 (104)
179 PRK10877 protein disulfide iso 77.1 3.4 7.3E-05 34.7 3.9 25 85-109 108-132 (232)
180 cd03006 PDI_a_EFP1_N PDIa fami 76.8 9 0.0002 28.4 5.8 56 87-142 32-95 (113)
181 TIGR01130 ER_PDI_fam protein d 76.8 18 0.00039 32.5 8.8 75 87-161 21-112 (462)
182 cd03065 PDI_b_Calsequestrin_N 76.6 17 0.00036 27.4 7.2 46 109-156 64-117 (120)
183 cd03020 DsbA_DsbC_DsbG DsbA fa 76.1 3.4 7.4E-05 33.3 3.6 34 85-118 78-113 (197)
184 cd02995 PDI_a_PDI_a'_C PDIa fa 75.9 12 0.00026 26.0 6.1 54 86-139 20-79 (104)
185 PF13728 TraF: F plasmid trans 75.8 11 0.00024 31.2 6.7 54 86-139 122-189 (215)
186 cd03002 PDI_a_MPD1_like PDI fa 75.3 10 0.00022 26.9 5.6 53 87-139 21-80 (109)
187 PF14595 Thioredoxin_9: Thiore 74.7 5.6 0.00012 30.3 4.2 52 86-139 43-103 (129)
188 PF04134 DUF393: Protein of un 74.5 11 0.00023 27.4 5.6 67 90-157 1-77 (114)
189 PRK13728 conjugal transfer pro 73.8 11 0.00024 30.7 5.9 32 88-119 73-108 (181)
190 cd02999 PDI_a_ERp44_like PDIa 72.7 21 0.00045 25.5 6.7 51 87-139 21-78 (100)
191 PF09635 MetRS-N: MetRS-N bind 71.9 2.7 5.8E-05 32.0 1.8 31 130-160 32-64 (122)
192 cd03001 PDI_a_P5 PDIa family, 69.8 24 0.00052 24.5 6.5 53 87-139 21-78 (103)
193 cd02998 PDI_a_ERp38 PDIa famil 69.8 15 0.00032 25.6 5.3 53 87-139 21-81 (105)
194 PLN02309 5'-adenylylsulfate re 68.4 32 0.0007 32.0 8.4 53 87-139 368-428 (457)
195 TIGR01126 pdi_dom protein disu 68.1 9.1 0.0002 26.5 3.9 53 86-138 15-74 (102)
196 TIGR00424 APS_reduc 5'-adenyly 67.5 28 0.00062 32.4 7.9 53 87-139 374-434 (463)
197 KOG0907 Thioredoxin [Posttrans 67.5 26 0.00057 25.7 6.3 56 88-145 25-88 (106)
198 cd02972 DsbA_family DsbA famil 66.2 7.5 0.00016 26.3 3.1 31 88-118 1-37 (98)
199 cd02960 AGR Anterior Gradient 63.2 17 0.00037 27.9 4.7 52 87-139 26-85 (130)
200 PF01323 DSBA: DSBA-like thior 61.0 15 0.00032 28.9 4.3 35 87-121 1-40 (193)
201 TIGR00385 dsbE periplasmic pro 60.4 48 0.001 26.0 7.1 21 87-107 66-86 (173)
202 cd02988 Phd_like_VIAF Phosduci 59.2 16 0.00035 29.7 4.2 57 88-146 106-167 (192)
203 cd03019 DsbA_DsbA DsbA family, 57.3 13 0.00029 28.7 3.3 35 84-118 15-55 (178)
204 cd03023 DsbA_Com1_like DsbA fa 56.4 15 0.00031 27.5 3.4 24 85-108 6-29 (154)
205 cd03009 TryX_like_TryX_NRX Try 55.8 50 0.0011 24.2 6.2 19 88-106 22-40 (131)
206 PRK13703 conjugal pilus assemb 55.3 46 0.00099 28.4 6.5 35 86-120 145-183 (248)
207 TIGR02740 TraF-like TraF-like 55.2 47 0.001 28.5 6.6 52 87-138 169-234 (271)
208 KOG3425 Uncharacterized conser 55.2 16 0.00036 27.8 3.3 64 93-156 42-121 (128)
209 COG2761 FrnE Predicted dithiol 54.4 27 0.00059 29.4 4.9 21 87-107 7-27 (225)
210 cd02986 DLP Dim1 family, Dim1- 54.4 38 0.00083 25.4 5.2 59 86-144 15-81 (114)
211 cd02970 PRX_like2 Peroxiredoxi 53.9 21 0.00045 26.6 3.9 56 86-141 24-89 (149)
212 PF13462 Thioredoxin_4: Thiore 53.9 15 0.00032 27.9 3.1 22 85-106 13-34 (162)
213 PTZ00062 glutaredoxin; Provisi 52.7 1.1E+02 0.0023 25.3 8.1 67 87-160 20-96 (204)
214 PRK00293 dipZ thiol:disulfide 51.4 95 0.0021 29.7 8.6 51 88-139 478-540 (571)
215 PTZ00102 disulphide isomerase; 50.2 66 0.0014 29.2 7.2 73 87-159 378-466 (477)
216 cd02992 PDI_a_QSOX PDIa family 48.7 63 0.0014 23.5 5.7 53 87-139 22-84 (114)
217 PF03190 Thioredox_DsbH: Prote 48.2 36 0.00078 27.2 4.5 59 88-146 41-118 (163)
218 TIGR02739 TraF type-F conjugat 48.1 57 0.0012 28.0 6.0 53 87-139 153-219 (256)
219 PLN00410 U5 snRNP protein, DIM 47.6 51 0.0011 25.6 5.2 55 88-142 27-89 (142)
220 PRK03147 thiol-disulfide oxido 47.0 1.3E+02 0.0028 23.0 8.7 18 87-104 64-81 (173)
221 cd04911 ACT_AKiii-YclM-BS_1 AC 46.4 23 0.0005 24.6 2.7 23 97-119 16-38 (76)
222 cd03022 DsbA_HCCA_Iso DsbA fam 46.2 32 0.00069 26.9 4.0 31 88-118 1-35 (192)
223 TIGR02738 TrbB type-F conjugat 45.0 64 0.0014 25.2 5.4 35 85-119 51-89 (153)
224 PF06953 ArsD: Arsenical resis 44.1 1.1E+02 0.0024 23.2 6.4 43 102-144 32-83 (123)
225 cd03021 DsbA_GSTK DsbA family, 43.4 45 0.00098 27.0 4.5 32 87-118 2-37 (209)
226 cd02966 TlpA_like_family TlpA- 41.6 84 0.0018 21.3 5.3 21 87-107 22-42 (116)
227 cd02964 TryX_like_family Trypa 40.6 1.5E+02 0.0032 21.8 6.8 19 88-106 21-39 (132)
228 TIGR01764 excise DNA binding d 39.2 56 0.0012 19.2 3.5 29 128-156 21-49 (49)
229 cd01976 Nitrogenase_MoFe_alpha 38.5 3.1E+02 0.0067 25.0 10.0 96 84-184 171-268 (421)
230 cd03011 TlpA_like_ScsD_MtbDsbE 37.5 46 0.001 23.9 3.4 21 87-107 23-43 (123)
231 PF09413 DUF2007: Domain of un 37.2 42 0.00091 21.9 2.9 32 88-119 1-32 (67)
232 cd03025 DsbA_FrnE_like DsbA fa 36.8 53 0.0012 25.7 3.9 31 87-117 2-38 (193)
233 TIGR01130 ER_PDI_fam protein d 36.5 1.9E+02 0.004 25.9 7.8 71 87-158 367-454 (462)
234 KOG0191 Thioredoxin/protein di 36.4 2.5E+02 0.0053 25.1 8.5 77 85-161 163-255 (383)
235 TIGR02681 phage_pRha phage reg 35.9 43 0.00093 24.8 3.0 25 134-158 2-27 (108)
236 cd03024 DsbA_FrnE DsbA family, 35.4 46 0.00099 26.3 3.3 31 88-118 1-39 (201)
237 PF13899 Thioredoxin_7: Thiore 32.4 43 0.00093 22.7 2.4 51 87-138 20-78 (82)
238 cd03012 TlpA_like_DipZ_like Tl 31.6 98 0.0021 22.5 4.4 32 88-119 27-63 (126)
239 PRK15412 thiol:disulfide inter 31.5 1.1E+02 0.0024 24.2 5.0 30 88-119 72-104 (185)
240 PF00578 AhpC-TSA: AhpC/TSA fa 30.9 89 0.0019 22.2 4.0 59 83-141 23-91 (124)
241 cd02982 PDI_b'_family Protein 30.8 1.8E+02 0.0039 19.9 6.2 53 87-139 15-74 (103)
242 cd03008 TryX_like_RdCVF Trypar 30.7 1.3E+02 0.0029 23.3 5.1 34 88-121 29-74 (146)
243 PF08534 Redoxin: Redoxin; In 30.5 96 0.0021 23.0 4.3 37 83-119 26-71 (146)
244 TIGR01282 nifD nitrogenase mol 28.3 4.9E+02 0.011 24.2 9.6 95 85-184 207-303 (466)
245 PF12728 HTH_17: Helix-turn-he 28.1 1.2E+02 0.0026 18.4 3.7 30 128-157 21-50 (51)
246 cd02967 mauD Methylamine utili 27.7 63 0.0014 22.8 2.7 22 87-108 24-45 (114)
247 PRK09266 hypothetical protein; 27.5 1.1E+02 0.0023 25.9 4.4 59 102-160 197-260 (266)
248 PRK14478 nitrogenase molybdenu 26.7 5.2E+02 0.011 24.0 9.8 95 84-184 190-287 (475)
249 cd05295 MDH_like Malate dehydr 26.0 1.5E+02 0.0032 27.6 5.4 69 94-162 2-89 (452)
250 cd05565 PTS_IIB_lactose PTS_II 25.7 1.5E+02 0.0034 21.4 4.4 22 97-118 15-36 (99)
251 cd03008 TryX_like_RdCVF Trypar 24.8 3.3E+02 0.0072 21.0 7.3 59 87-145 65-127 (146)
252 cd02971 PRX_family Peroxiredox 24.7 1.2E+02 0.0026 22.1 3.8 55 85-141 22-89 (140)
253 PF05728 UPF0227: Uncharacteri 23.9 2E+02 0.0044 23.1 5.3 71 88-162 3-84 (187)
254 PRK10954 periplasmic protein d 23.7 96 0.0021 25.1 3.4 17 130-146 164-180 (207)
255 PF12062 HSNSD: heparan sulfat 23.1 2.8E+02 0.0061 26.1 6.5 49 82-140 57-105 (487)
256 TIGR01626 ytfJ_HI0045 conserve 23.1 1.9E+02 0.004 23.5 4.8 34 86-119 59-103 (184)
257 COG5515 Uncharacterized conser 22.9 76 0.0016 21.2 2.0 21 88-108 3-27 (70)
258 COG0526 TrxA Thiol-disulfide i 22.5 84 0.0018 20.9 2.5 18 92-109 40-57 (127)
259 PF11823 DUF3343: Protein of u 22.3 1.6E+02 0.0034 19.7 3.7 31 89-119 4-34 (73)
260 PRK09437 bcp thioredoxin-depen 21.8 1E+02 0.0022 23.3 2.9 53 85-140 30-95 (154)
261 cd03018 PRX_AhpE_like Peroxire 21.7 1.3E+02 0.0029 22.2 3.6 21 86-106 29-51 (149)
262 cd03007 PDI_a_ERp29_N PDIa fam 21.5 3.5E+02 0.0076 20.1 7.0 55 87-141 21-90 (116)
263 KOG4277 Uncharacterized conser 21.4 2E+02 0.0043 25.7 4.9 71 88-158 47-132 (468)
264 cd03017 PRX_BCP Peroxiredoxin 21.3 96 0.0021 22.7 2.7 54 85-141 23-89 (140)
265 TIGR02014 BchZ chlorophyllide 21.2 6.8E+02 0.015 23.3 10.0 86 84-178 151-241 (468)
266 PF07511 DUF1525: Protein of u 20.7 1.2E+02 0.0026 22.8 3.0 28 129-156 79-107 (114)
267 KOG4023 Uncharacterized conser 20.3 3.3E+02 0.0071 20.1 5.1 67 88-154 4-87 (108)
268 KOG0912 Thiol-disulfide isomer 20.3 78 0.0017 28.2 2.2 77 84-160 11-108 (375)
269 PF05496 RuvB_N: Holliday junc 20.1 2.2E+02 0.0047 24.2 4.8 58 86-143 51-111 (233)
No 1
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.84 E-value=5.2e-21 Score=161.43 Aligned_cols=120 Identities=48% Similarity=0.747 Sum_probs=97.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhhc-------
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL------- 158 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~------- 158 (210)
=.++||+|..||||-|||.+|.++||+|++++||+..+.+++++..+|||+|.++|+.+.||..||.-|+...
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~l 168 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQDL 168 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEeccceechhHHHHHHHHHHhccCCCCH
Confidence 3799999999999999999999999999999999999999999999999999999999999999998774432
Q ss_pred -------CCCCC--C-------------------C---CCCChHHHHHHHHHHHhhhhhHHHHhhhccccchhhchhh
Q 028332 159 -------TPKRK--A-------------------D---SPSGDDEEKKWRGQFQLHRKTYSKICWSCSNVFCVQKTEK 205 (210)
Q Consensus 159 -------~~~~~--~-------------------~---~~~~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 205 (210)
|.-.. . + ..+.+.+.+.|..|+|+||.|++.+-.++.-.+.++.++.
T Consensus 169 ~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 169 GEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred HHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 21000 0 0 0112558899999999999999988766665566655543
No 2
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.8e-20 Score=151.63 Aligned_cols=112 Identities=22% Similarity=0.336 Sum_probs=96.9
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhH--HhhC-CCCcccEEEECCeEeecHHHHHHHHHhhcCC-
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWS-EYKKVPILMVDGEQLVDSSAIIDQLDQKLTP- 160 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~--l~~~-p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~- 160 (210)
++.++||++..|||++|++++|+++||+|+++++|..++++ +++| +.+|||+|++||..|+||..|++||++.++.
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 47899999999999999999999999999999999888888 4689 7999999999999999999999999999994
Q ss_pred C-CCCCCCCChHHHHHHHHHHHhhhhhHHHHhhhccc
Q 028332 161 K-RKADSPSGDDEEKKWRGQFQLHRKTYSKICWSCSN 196 (210)
Q Consensus 161 ~-~~~~~~~~~~~~~~w~~~~~~~l~~~l~~~~~~~~ 196 (210)
+ .+|.+.-+++..+.|.+++++.+..+....+...+
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~ 123 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKG 123 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 3 34544445999999999999987777666655333
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.79 E-value=7.7e-19 Score=144.90 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=85.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-H-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCC-
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR- 162 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~- 162 (210)
.+++||+++.||+|++++++|+++||+|+.+.++...++ + +++||.|+||+|++||..|+||.+|++||+++|+...
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 379999999999999999999999999999999876543 4 4699999999999999999999999999999998643
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhhHH
Q 028332 163 KADSPSGDDEEKKWRGQFQLHRKTYS 188 (210)
Q Consensus 163 ~~~~~~~~~~~~~w~~~~~~~l~~~l 188 (210)
.+.+..+++++.+|..|++..+....
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~~~~~ 114 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDWYSLM 114 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33323347888899888776554433
No 4
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.77 E-value=1.8e-18 Score=120.55 Aligned_cols=72 Identities=40% Similarity=0.688 Sum_probs=66.0
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-hH-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCC
Q 028332 90 LYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (210)
Q Consensus 90 Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~ 161 (210)
||+++.||||+|++++|+++||+|+.+.++...+ ++ .++||.++||+|++||..++||.+|++||+++++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999986654 33 459999999999999999999999999999999864
No 5
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.77 E-value=2.6e-18 Score=119.93 Aligned_cols=73 Identities=67% Similarity=1.183 Sum_probs=66.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEEC----CeEeecHHHHHHHHHhhcC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVD----GEQLVDSSAIIDQLDQKLT 159 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~----g~~l~eS~aI~~yL~~~~~ 159 (210)
+++||+++.||||+|++++|.++||+|+.+++++...++++.+|.++||+|+++ |..|+||.+|++||+++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 489999999999999999999999999999998766666788999999999976 7899999999999998754
No 6
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.77 E-value=3.2e-18 Score=123.29 Aligned_cols=85 Identities=28% Similarity=0.435 Sum_probs=75.6
Q ss_pred hcccccCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-HH-hhCCCCcccEEEEC-CeEeecH
Q 028332 71 QSVYAKEPLPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-KWSEYKKVPILMVD-GEQLVDS 147 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~l-~~~p~g~VP~L~~~-g~~l~eS 147 (210)
..+++|+.+.....+++++||+++.||+|++++++|+++|++|+.+.++...+. ++ +.||.++||+|+++ |..|+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS 81 (89)
T cd03055 2 SKHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYES 81 (89)
T ss_pred ccccccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECH
Confidence 357888888877899999999999999999999999999999999999865543 34 58999999999987 8999999
Q ss_pred HHHHHHHH
Q 028332 148 SAIIDQLD 155 (210)
Q Consensus 148 ~aI~~yL~ 155 (210)
.+|++||+
T Consensus 82 ~aI~~yLe 89 (89)
T cd03055 82 LIICEYLD 89 (89)
T ss_pred HHHHHhhC
Confidence 99999985
No 7
>PRK15113 glutathione S-transferase; Provisional
Probab=99.76 E-value=4.7e-18 Score=140.51 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=83.9
Q ss_pred CcEEEEEeC--CChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhc
Q 028332 86 KEVVLYQYE--ACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 86 ~~v~Ly~~~--~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~ 158 (210)
++++||+.+ .||+|++++++|.++||+|+.+.++... .++ +++||.|+||+|++||..|+||.+|++||++++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 579999976 6999999999999999999999998643 234 459999999999999999999999999999999
Q ss_pred CCC----CCCCCCCChHHHHHHHHHHHhhhhh
Q 028332 159 TPK----RKADSPSGDDEEKKWRGQFQLHRKT 186 (210)
Q Consensus 159 ~~~----~~~~~~~~~~~~~~w~~~~~~~l~~ 186 (210)
+.. ..+.+..+++++++|..|++..+..
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~ 115 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMP 115 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 754 3332223488899999999765544
No 8
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=4.2e-18 Score=119.37 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=63.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhH-HhhCCCCcccEEEE--CCeEeecHHHHHHHHHhhc
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKE-IKWSEYKKVPILMV--DGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~-l~~~p~g~VP~L~~--~g~~l~eS~aI~~yL~~~~ 158 (210)
|++||+++.||+|+|++++|.++||+|+.++++... .++ +++||.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 589999999999999999999999999999987433 234 45999999999997 4689999999999999875
No 9
>PRK10387 glutaredoxin 2; Provisional
Probab=99.74 E-value=2e-17 Score=135.55 Aligned_cols=100 Identities=22% Similarity=0.366 Sum_probs=82.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC-hhHHhhCCCCcccEE-EECCeEeecHHHHHHHHHhhcCCCCCCC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIKWSEYKKVPIL-MVDGEQLVDSSAIIDQLDQKLTPKRKAD 165 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~-~~~l~~~p~g~VP~L-~~~g~~l~eS~aI~~yL~~~~~~~~~~~ 165 (210)
|+||+++.||+|+||+++|+++||+|+.+.++... ....+.||.++||+| ++||..|+||.+|++||+++|+.+...
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~- 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT- 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-
Confidence 68999999999999999999999999999886433 223668999999999 578999999999999999999865443
Q ss_pred CCCChHHHHHHHHHHHhhhhhHHH
Q 028332 166 SPSGDDEEKKWRGQFQLHRKTYSK 189 (210)
Q Consensus 166 ~~~~~~~~~~w~~~~~~~l~~~l~ 189 (210)
+. +++.+.+|..|+...+...+.
T Consensus 80 ~~-~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T PRK10387 80 GK-RSPAIEEWLRKVFGYLNKLLY 102 (210)
T ss_pred Cc-ccHHHHHHHHHHHHHhhcchh
Confidence 22 388899999988776654443
No 10
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.74 E-value=1.4e-17 Score=114.53 Aligned_cols=71 Identities=23% Similarity=0.438 Sum_probs=64.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-HH-hhCCCCcccEEEECCeEeecHHHHHHHHHhhc
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~ 158 (210)
|+||+.+.||+|++++++|+++|++|+.++++...+. ++ ++||.|+||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999865443 44 58999999999999999999999999999875
No 11
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1e-17 Score=133.32 Aligned_cols=119 Identities=24% Similarity=0.367 Sum_probs=95.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-----HHh-hCCCCcccEEEECCeEeecHHHHHHHHHhhcC
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-----EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-----~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~ 159 (210)
.+.+||+|..|.++++||++|..+||+|+.+.||....+ +++ +||.++||.|++||..|.||.||++||++.+|
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999864432 344 99999999999999999999999999999999
Q ss_pred CCC-CCCCCCC-------------------------------hHHHHHHH-HHHHhhhhhHHHHhhhccccchhhchh
Q 028332 160 PKR-KADSPSG-------------------------------DDEEKKWR-GQFQLHRKTYSKICWSCSNVFCVQKTE 204 (210)
Q Consensus 160 ~~~-~~~~~~~-------------------------------~~~~~~w~-~~~~~~l~~~l~~~~~~~~~~~~~~~~ 204 (210)
.+. .|.+..+ .....+|. .|+...|..+...+..+.+++|+++-.
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDev 161 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEV 161 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCcee
Confidence 864 3322211 22235564 577777777777888889999988643
No 12
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.73 E-value=2e-17 Score=113.75 Aligned_cols=69 Identities=32% Similarity=0.583 Sum_probs=61.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-HHhhCCCCcccEEEEC-CeEeecHHHHHHHHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EIKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~l~~~p~g~VP~L~~~-g~~l~eS~aI~~yL~~ 156 (210)
|+||+++.||||+|++++|.++|++|+.+.++..... .++.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5799999999999999999999999999988754322 3568999999999986 8999999999999975
No 13
>PLN02473 glutathione S-transferase
Probab=99.72 E-value=4.6e-17 Score=133.99 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=83.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~ 161 (210)
.|+||+.+.||+|+||+++|.++||+|+.+.++... .++ +++||.|+||+|++||..|+||.+|++||+++++..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 479999999999999999999999999999887542 233 568999999999999999999999999999999742
Q ss_pred ---CCCCCCCChHHHHHHHHHHHhhhhh
Q 028332 162 ---RKADSPSGDDEEKKWRGQFQLHRKT 186 (210)
Q Consensus 162 ---~~~~~~~~~~~~~~w~~~~~~~l~~ 186 (210)
..+.+..+++++.+|..|+.+.+..
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~ 109 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYA 109 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccH
Confidence 2333333488899999998776543
No 14
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.72 E-value=4.3e-17 Score=112.96 Aligned_cols=71 Identities=30% Similarity=0.458 Sum_probs=63.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-H-HhhCCC-CcccEEEECCeEeecHHHHHHHHHhhc
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEY-KKVPILMVDGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~-l~~~p~-g~VP~L~~~g~~l~eS~aI~~yL~~~~ 158 (210)
|+||+++.||+|+|++++|+++|++|+.+.++...+. + .++||. ++||+|+++|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999998865433 3 358995 999999999999999999999999864
No 15
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.71 E-value=3.9e-17 Score=112.76 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=61.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhHH-hhCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
++||+++.||+|++++++|+++|++|+.+.++... .+++ ++||.|+||+|+++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999987533 2344 599999999999999999999999999974
No 16
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7e-17 Score=132.89 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=85.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC---hhHH-hhCCCCcccEEEECCe-EeecHHHHHHHHHhhcCCC-
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKEI-KWSEYKKVPILMVDGE-QLVDSSAIIDQLDQKLTPK- 161 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~---~~~l-~~~p~g~VP~L~~~g~-~l~eS~aI~~yL~~~~~~~- 161 (210)
++||+.+.||+|.|++++|.++|++|+.+.++... .+++ .+||.|+||+|+++|. +|+||.+|++||+++|+.+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 58999999999999999999999999999998763 2344 6999999999998765 9999999999999999987
Q ss_pred CCC-CCCC--ChHHHHHHHHHHHhhhhhHHHHh
Q 028332 162 RKA-DSPS--GDDEEKKWRGQFQLHRKTYSKIC 191 (210)
Q Consensus 162 ~~~-~~~~--~~~~~~~w~~~~~~~l~~~l~~~ 191 (210)
..+ ++.. .+.....|..|.+..+...+...
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~ 113 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQR 113 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 544 4332 36677788888877666665443
No 17
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.71 E-value=4.6e-17 Score=117.99 Aligned_cols=70 Identities=26% Similarity=0.469 Sum_probs=63.4
Q ss_pred eCCChhHHHHHHHHHhcCCCeEEEEeCCCChhH--HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCC
Q 028332 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (210)
Q Consensus 93 ~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~--l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 162 (210)
...||||++++++|+++||+|+.+++|+.++++ +++||.|+||+|+++|..|+||.+|++||++.++++.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCCC
Confidence 345999999999999999999999999877666 4599999999999999999999999999999987653
No 18
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.71 E-value=4.1e-17 Score=113.44 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=60.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCC---C-hhH-HhhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---N-KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~---~-~~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
++||+++.||+|++++++|+++|++|+.+.++.. . .++ .++||.|+||+|++||..|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998753 2 233 459999999999999999999999999985
No 19
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.70 E-value=7.4e-17 Score=133.21 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=80.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEE-----CC--eEeecHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMV-----DG--EQLVDSSAIIDQL 154 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~-----~g--~~l~eS~aI~~yL 154 (210)
|++||+.+ +|+|++|+++|+++||+|+.+.++... .++ +++||.|+||+|++ || .+|+||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 58999887 699999999999999999999997543 234 45999999999997 45 4799999999999
Q ss_pred HhhcCCCCCCCCCCChHHHHHHHHHHHhhhhhHH
Q 028332 155 DQKLTPKRKADSPSGDDEEKKWRGQFQLHRKTYS 188 (210)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~l 188 (210)
+++++. ..+.+..+++++++|..|.+..+...+
T Consensus 80 ~~~~~~-l~p~~~~~ra~~~~~~~~~~~~~~~~~ 112 (215)
T PRK13972 80 AEKTGL-FLSHETRERAATLQWLFWQVGGLGPML 112 (215)
T ss_pred HHhcCC-CCCCCHHHHHHHHHHHHHHhhccCcce
Confidence 999863 223223348889999999987665543
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.70 E-value=1.3e-16 Score=131.75 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=81.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC-hhHHhhCCCCcccEEE-ECCeEeecHHHHHHHHHhhcCCCCCCCC
Q 028332 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKRKADS 166 (210)
Q Consensus 89 ~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~-~~~l~~~p~g~VP~L~-~~g~~l~eS~aI~~yL~~~~~~~~~~~~ 166 (210)
+||++..||||+||+++|+++|++|+.+.++... ...+++||.|+||+|+ +||..|+||.+|++||+++|+.+... +
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~-~ 79 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT-G 79 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC-C
Confidence 5899999999999999999999999998775432 2336799999999998 89999999999999999999764332 2
Q ss_pred CCChHHHHHHHHHHHhhhhhHHH
Q 028332 167 PSGDDEEKKWRGQFQLHRKTYSK 189 (210)
Q Consensus 167 ~~~~~~~~~w~~~~~~~l~~~l~ 189 (210)
. .+.++.+|..|+...+...+.
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~ 101 (209)
T TIGR02182 80 K-VSPEIEAWLRKVTGYANKLLL 101 (209)
T ss_pred C-ChHHHHHHHHHHHHHhhhhhc
Confidence 2 378899999888776655543
No 21
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.69 E-value=1.4e-16 Score=109.61 Aligned_cols=66 Identities=27% Similarity=0.454 Sum_probs=59.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-HH-hhCCCCcccEEEEC-CeEeecHHHHHHHH
Q 028332 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-KWSEYKKVPILMVD-GEQLVDSSAIIDQL 154 (210)
Q Consensus 89 ~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~l-~~~p~g~VP~L~~~-g~~l~eS~aI~~yL 154 (210)
+||+++.||||++++++|+++|++|+.+.++...++ ++ ++||.|+||+|+++ |..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999865543 44 59999999999985 99999999999997
No 22
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.69 E-value=1.8e-16 Score=110.42 Aligned_cols=68 Identities=38% Similarity=0.634 Sum_probs=62.2
Q ss_pred cEEEEEeC-------CChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhhcC
Q 028332 87 EVVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (210)
Q Consensus 87 ~v~Ly~~~-------~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~ 159 (210)
+++||+++ .||+|.|++++|+++|++|+.+.++.. +++|.|+||+|++||+.++||.+|++||+++|+
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----KRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----cCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 57999999 579999999999999999999988742 479999999999999999999999999999875
No 23
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.67 E-value=4.8e-16 Score=126.86 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=80.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-H-HhhCCCCcccEEE-ECCeEeecHHHHHHHHHhhcCCCC-C
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKR-K 163 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~-l~~~p~g~VP~L~-~~g~~l~eS~aI~~yL~~~~~~~~-~ 163 (210)
++||+++.||++++|+++|+++||+|+.+.++...++ + .++||.|+||+|+ +||..|+||.+|++||+++++... .
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999999999999988865433 3 3489999999998 578999999999999999986543 3
Q ss_pred CCCCCChHHHHHHHHHHHhhhhhH
Q 028332 164 ADSPSGDDEEKKWRGQFQLHRKTY 187 (210)
Q Consensus 164 ~~~~~~~~~~~~w~~~~~~~l~~~ 187 (210)
+.+..+++.+++|..|++..+...
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~ 104 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAA 104 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333778888988877655433
No 24
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.67 E-value=4.1e-16 Score=108.55 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=63.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh----hH-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhc
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~----~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~ 158 (210)
++||+++.|++|++++++|+++|++|+.+.++.... ++ .++||.|+||+|+++|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 579999999999999999999999999999875332 23 358999999999999999999999999999875
No 25
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.66 E-value=4.8e-16 Score=109.48 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=63.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEEC---CeEeecHHHHHHHHHhhc
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVD---GEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~---g~~l~eS~aI~~yL~~~~ 158 (210)
+++||+++. |+|++++++|+++||+|+.+.++... .++ .++||.++||+|+++ |..|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 589999986 99999999999999999999987432 233 459999999999997 899999999999999998
Q ss_pred CC
Q 028332 159 TP 160 (210)
Q Consensus 159 ~~ 160 (210)
+.
T Consensus 80 ~~ 81 (81)
T cd03048 80 DK 81 (81)
T ss_pred CC
Confidence 63
No 26
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=3.7e-16 Score=107.19 Aligned_cols=68 Identities=34% Similarity=0.566 Sum_probs=60.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
++||+++.||+|++++++|+++|++|+.+.++... .++ .++||.++||+|+++|..|.||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999987532 233 458999999999999999999999999984
No 27
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.66 E-value=5e-16 Score=107.80 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=62.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhHH-hhCCCCcccEEEECCeEeecHHHHHHHHHhh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
++||+++.||+|++++++|+++|++|+.+.++... .+++ ++||.|+||+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 79999999999999999999999999999887532 2334 5999999999999999999999999999863
No 28
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.65 E-value=4.7e-16 Score=107.80 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=62.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-hHH-hhCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
.++||+++.|++|++++++|+++|++|+.+.++.... +++ ++||.|+||+|++||..|+||.+|++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 3799999999999999999999999999999975322 234 489999999999999999999999999986
No 29
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.65 E-value=4.3e-16 Score=106.88 Aligned_cols=68 Identities=28% Similarity=0.390 Sum_probs=59.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEE-CCeEeecHHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~ 155 (210)
++||+++.||+|+|++++|+++|++|+.+.++... .++ .++||.++||+|++ ||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999887432 233 45999999999995 7889999999999985
No 30
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.64 E-value=5.9e-16 Score=106.64 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=61.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh--HH-hhCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~--~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
++||+++.|++|++++++|+++|++|+.+.++..... ++ ++||.++||+|+++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999998854322 23 489999999999999999999999999974
No 31
>PLN02395 glutathione S-transferase
Probab=99.64 E-value=2.2e-15 Score=123.94 Aligned_cols=98 Identities=12% Similarity=0.186 Sum_probs=80.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~ 161 (210)
.++||+.+.| +++|++++|.++||+|+.+.++... .++ +++||.|+||+|+++|..|+||.+|++||+++++..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 3799997775 6999999999999999999987532 234 459999999999999999999999999999998742
Q ss_pred ---CCCCCCCChHHHHHHHHHHHhhhh
Q 028332 162 ---RKADSPSGDDEEKKWRGQFQLHRK 185 (210)
Q Consensus 162 ---~~~~~~~~~~~~~~w~~~~~~~l~ 185 (210)
..+.+..+++++..|..|.+..+.
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~ 107 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYH 107 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcC
Confidence 333333348899999999876554
No 32
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.63 E-value=1.9e-15 Score=123.01 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=81.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-----hH-HhhCCCCcccEEEE-CCeEeecHHHHHHHHHhhcCC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-----KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTP 160 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-----~~-l~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~~~~~~ 160 (210)
|+||+.+.+ ++.+++++|+++||+|+.+.++...+ ++ .++||.|+||+|++ ||..|+||.+|++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 579998865 79999999999999999999886432 34 45999999999985 889999999999999999986
Q ss_pred CC-C-CCCCCChHHHHHHHHHHHhhhhhHHHH
Q 028332 161 KR-K-ADSPSGDDEEKKWRGQFQLHRKTYSKI 190 (210)
Q Consensus 161 ~~-~-~~~~~~~~~~~~w~~~~~~~l~~~l~~ 190 (210)
.. . +.+..+++++++|..|+...+.+.+..
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~ 111 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTP 111 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhh
Confidence 43 2 322334788889999987776655443
No 33
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=1.2e-15 Score=105.33 Aligned_cols=68 Identities=29% Similarity=0.436 Sum_probs=60.3
Q ss_pred EEEEEeCCChhHHHHHHHHHh--cCCCeEEEEeCCCCh-hH-HhhCCCCcccEEEE-CCeEeecHHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDY--YDIPYKVVEVNPINK-KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~--~gi~y~~v~vd~~~~-~~-l~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~ 155 (210)
++||+++.||+|++++++|++ +|++|+.+.++...+ ++ .++||.++||+|++ ||..+.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999999986443 34 45999999999985 8899999999999985
No 34
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=9.5e-16 Score=122.02 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=90.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC-hhHHhhCCCCcccEEE-ECCeEeecHHHHHHHHHhhcCCCCCCC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKRKAD 165 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~-~~~l~~~p~g~VP~L~-~~g~~l~eS~aI~~yL~~~~~~~~~~~ 165 (210)
|+||-|.+||||.|+|+++..+|||++.+.+..++ ....++-+.++||+|+ .||+.+.||.+|++|+++..+.+...+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 68999999999999999999999999998775322 2236789999999998 589999999999999999988765433
Q ss_pred CCCChHHHHHHHHHHHhhhhhHHHHhhhcccc
Q 028332 166 SPSGDDEEKKWRGQFQLHRKTYSKICWSCSNV 197 (210)
Q Consensus 166 ~~~~~~~~~~w~~~~~~~l~~~l~~~~~~~~~ 197 (210)
.. +++..+|++-+...+..++.+.+..++-
T Consensus 81 ~~--~pai~~wlrkv~~y~nkll~PR~~k~~l 110 (215)
T COG2999 81 KV--RPAIEAWLRKVNGYLNKLLLPRFAKSAL 110 (215)
T ss_pred Cc--CHHHHHHHHHhcchHhhhhhhhHhhcCC
Confidence 22 7889999998888888888887766553
No 35
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.61 E-value=3.1e-15 Score=104.23 Aligned_cols=71 Identities=24% Similarity=0.370 Sum_probs=61.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEEC-CeEeecHHHHHHHHHhhcC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~-g~~l~eS~aI~~yL~~~~~ 159 (210)
++||+++.| +|++++++|+++|++|+.+.++... .++ .++||.++||+|+++ |..++||.+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 579999986 5999999999999999999987543 234 459999999999987 8999999999999999875
No 36
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.61 E-value=2.2e-15 Score=123.43 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=79.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC-----hhHH-hhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCC
Q 028332 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (210)
Q Consensus 89 ~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~-----~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 162 (210)
+||++..||+|++++++|+++||+|+.+.++... .+++ ++||.|+||+|++||..|+||.+|++||+++++...
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999888521 2334 599999999999999999999999999999997643
Q ss_pred -CCCCCCChHHHHHHHHHHHhhh
Q 028332 163 -KADSPSGDDEEKKWRGQFQLHR 184 (210)
Q Consensus 163 -~~~~~~~~~~~~~w~~~~~~~l 184 (210)
.+.+..+++.+.+|..|++..+
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~ 103 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDI 103 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhccc
Confidence 3333334888899988886544
No 37
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.61 E-value=3.2e-15 Score=103.32 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=60.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
++||+++.||+|++++++|+++|++|+.+.++... .++ .++||.|+||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 48999999999999999999999999999887422 233 459999999999999999999999999984
No 38
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.60 E-value=3.4e-15 Score=103.86 Aligned_cols=68 Identities=31% Similarity=0.375 Sum_probs=60.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCC--C-hhHH-hhCCCCcccEEEE-CCeEeecHHHHHHHHHh
Q 028332 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI--N-KKEI-KWSEYKKVPILMV-DGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 89 ~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~--~-~~~l-~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~~ 156 (210)
+||+++.||+|++++++|+++|++|+.+.++.. . .+++ ++||.|+||+|++ ||..|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 699999999999999999999999999999864 2 2344 5999999999997 58999999999999986
No 39
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.60 E-value=3.1e-15 Score=106.22 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=57.8
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEeCCCChhH----HhhCCCCcccEEEEC-CeEeecHHHHHHHHHhhcC
Q 028332 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE----IKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (210)
Q Consensus 94 ~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~----l~~~p~g~VP~L~~~-g~~l~eS~aI~~yL~~~~~ 159 (210)
+.||+|+|++++|+++||+|+.+.++....+. +++||.++||+|+++ |..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 56999999999999999999999987543322 357999999999998 8999999999999999875
No 40
>PRK11752 putative S-transferase; Provisional
Probab=99.60 E-value=4.8e-15 Score=126.82 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=78.8
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhc------CCCeEEEEeCCCCh----hH-HhhCCCCcccEEEEC----CeEeecHH
Q 028332 84 VPKEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINK----KE-IKWSEYKKVPILMVD----GEQLVDSS 148 (210)
Q Consensus 84 ~~~~v~Ly~~~~cp~c~kv~~~L~~~------gi~y~~v~vd~~~~----~~-l~~~p~g~VP~L~~~----g~~l~eS~ 148 (210)
.+.+++||+.+ ||+|++|+++|+++ |++|+.+.++.... ++ +++||.|+||+|+++ |..|+||.
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 34589999976 89999999999997 89999998875432 34 469999999999985 36899999
Q ss_pred HHHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhh
Q 028332 149 AIIDQLDQKLTPKRKADSPSGDDEEKKWRGQFQLH 183 (210)
Q Consensus 149 aI~~yL~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 183 (210)
+|++||++.++. ..+....++++++.|+.|.+..
T Consensus 120 AIl~YL~~~~~~-L~P~~~~era~v~~wl~~~~~~ 153 (264)
T PRK11752 120 AILLYLAEKFGA-FLPKDLAARTETLNWLFWQQGS 153 (264)
T ss_pred HHHHHHHHhcCC-cCCCCHHHHHHHHHHHHHHhhh
Confidence 999999999874 3333233488899999988654
No 41
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.60 E-value=4.4e-15 Score=101.93 Aligned_cols=68 Identities=31% Similarity=0.455 Sum_probs=60.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhHH-hhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
++||+++.|++|++++++|+++|++|+.+.++... .+++ ++||.++||+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999987532 2333 58999999999999999999999999985
No 42
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.60 E-value=6.7e-15 Score=101.87 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=62.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCC---C-hhHH-hhCCCCcccEEEECCeEeecHHHHHHHHHhhcC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---N-KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~---~-~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~ 159 (210)
++||+++. ++|++++++|+++|++|+.+.++.. . .+++ ++||.++||+|+++|..|+||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47999887 6899999999999999999998853 2 2344 599999999999999999999999999999875
No 43
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.58 E-value=8.2e-15 Score=97.92 Aligned_cols=68 Identities=29% Similarity=0.444 Sum_probs=60.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh--HH-hhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~--~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
++||+++.||+|++++++|+++|++|+.+.++..... ++ +.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998754322 23 48999999999999999999999999984
No 44
>PLN02378 glutathione S-transferase DHAR1
Probab=99.58 E-value=9.7e-15 Score=120.84 Aligned_cols=71 Identities=27% Similarity=0.466 Sum_probs=63.2
Q ss_pred EeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhH--HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCC
Q 028332 92 QYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (210)
Q Consensus 92 ~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~--l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 162 (210)
.+..||||++|+++|+++|++|+.+.+|...+++ +++||.|+||+|++||..|+||.+|++||+++++...
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~ 88 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPP 88 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCC
Confidence 4555999999999999999999999999766553 5699999999999999999999999999999997643
No 45
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.58 E-value=1.1e-14 Score=100.33 Aligned_cols=65 Identities=38% Similarity=0.596 Sum_probs=58.4
Q ss_pred EEEEEeC-------CChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhh
Q 028332 88 VVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 88 v~Ly~~~-------~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
++||.++ .||+|++++++|+++||+|+.++++... ++|.|+||+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-----RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-----cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3677777 7999999999999999999999987532 689999999999999999999999999874
No 46
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.57 E-value=3.1e-14 Score=120.06 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=62.8
Q ss_pred eCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-H-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCC
Q 028332 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (210)
Q Consensus 93 ~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~ 161 (210)
.+.||||++|+++|.++||+|+.+.+|+..++ + +++||.|+||+|+++|..|+||.+|++||+++|+++
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCC
Confidence 56799999999999999999999999987654 4 569999999999999999999999999999999764
No 47
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.56 E-value=1.2e-14 Score=100.10 Aligned_cols=63 Identities=30% Similarity=0.517 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEeCC----CCh-hH-HhhCCCCcccEEEE-CCeEeecHHHHHHHHHhh
Q 028332 95 ACPFCNKVKAFLDYYDIPYKVVEVNP----INK-KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 95 ~cp~c~kv~~~L~~~gi~y~~v~vd~----~~~-~~-l~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~~~ 157 (210)
.||||+|++++|+++||+|+...++. ..+ ++ .++||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988732 222 23 45999999999998 899999999999999974
No 48
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.56 E-value=2.8e-14 Score=100.50 Aligned_cols=70 Identities=19% Similarity=0.357 Sum_probs=61.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHH-hh-----CCCCcccEEEECCeEeecHHHHHHHHHhhcC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEI-KW-----SEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l-~~-----~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~ 159 (210)
++||+++.++.|++++++|+++|++|+.+.++.. +++ +. .|.|+||+|++||..|+||.||++||+++++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~--~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA--EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH--HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 5899999999999999999999999999988742 221 23 3689999999999999999999999999876
No 49
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.54 E-value=3.6e-14 Score=100.74 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=60.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC-----hhHH-h-----hCCCCcccEEEECCeEeecHHHHHHHHHhh
Q 028332 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-----KKEI-K-----WSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 89 ~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~-----~~~l-~-----~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
+||+++.++.|++++++|+++||+|+.+.++... .+++ . .+|.|+||+|++||..|+||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 6899999999999999999999999999998543 1232 1 229999999999999999999999999986
Q ss_pred c
Q 028332 158 L 158 (210)
Q Consensus 158 ~ 158 (210)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 50
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.7e-14 Score=119.67 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=85.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC----hhH-HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~----~~~-l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~ 161 (210)
.++||+++.+|.|+++.++++++|++|+.+.+|... .++ +++||.|+||+|+++|..++||.||+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~-~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG-P 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC-C
Confidence 478999999999999999999999999999887432 233 6699999999999999999999999999999997 3
Q ss_pred C----CCCCCCChHHHHHHHHHHHhhhhhH
Q 028332 162 R----KADSPSGDDEEKKWRGQFQLHRKTY 187 (210)
Q Consensus 162 ~----~~~~~~~~~~~~~w~~~~~~~l~~~ 187 (210)
. ++....+++.+.+|+.|.++.+...
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~ 110 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPV 110 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccc
Confidence 2 2333345899999999998887766
No 51
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.53 E-value=7.9e-14 Score=98.20 Aligned_cols=73 Identities=22% Similarity=0.442 Sum_probs=63.8
Q ss_pred CCCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-hHHh-hCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 83 LVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 83 ~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
..+++|+||+.++||+|.+++.+|..+||+|+.++++.... .+++ .++..+||++++||+.|+++.+|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 35678999999999999999999999999999999874432 2343 6889999999999999999999999984
No 52
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.53 E-value=3.5e-14 Score=121.76 Aligned_cols=83 Identities=30% Similarity=0.471 Sum_probs=67.8
Q ss_pred eCCChhHHHHHHHHHhcCCCeEEEEeCCCChhH--HhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCCCCCCCCCh
Q 028332 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGD 170 (210)
Q Consensus 93 ~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~--l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~~~~~~~~~ 170 (210)
...||||++++++|+++||+|+.+.++...+++ +++||.|+||+|+++|..|+||.+|++||+++++.+...++. ++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~~~~-er 148 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPP-EK 148 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCCCHH-HH
Confidence 334999999999999999999999998765544 569999999999999999999999999999999875443322 25
Q ss_pred HHHHHH
Q 028332 171 DEEKKW 176 (210)
Q Consensus 171 ~~~~~w 176 (210)
+++..|
T Consensus 149 a~i~~~ 154 (265)
T PLN02817 149 ASVGSK 154 (265)
T ss_pred HHHHHH
Confidence 555544
No 53
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.51 E-value=1.9e-13 Score=112.33 Aligned_cols=91 Identities=23% Similarity=0.254 Sum_probs=71.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-----HH---hhCCCCcccEEEECCeEeecHHHHHHHHHhh
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-----EI---KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-----~l---~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
++++||+++.++++.+++++|+++||+|+.+.++....+ ++ +.||.|+||+|++||..|+||.+|++||+++
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~ 82 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKK 82 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 559999999999999999999999999999977532111 11 3799999999999999999999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHH
Q 028332 158 LTPKRKADSPSGDDEEKKWRGQF 180 (210)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~w~~~~ 180 (210)
++... .....+...|..|.
T Consensus 83 ~~~~~----~~~~~~~~~~~~~~ 101 (205)
T PTZ00057 83 YKICG----ESELNEFYADMIFC 101 (205)
T ss_pred cCCCC----CCHHHHHHHHHHHH
Confidence 97432 11244555565444
No 54
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.50 E-value=2e-13 Score=95.42 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=56.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh----hHH-hhCCC-CcccEEEEC-CeEeecHHHHHHHHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KEI-KWSEY-KKVPILMVD-GEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~----~~l-~~~p~-g~VP~L~~~-g~~l~eS~aI~~yL~~ 156 (210)
++|+.|+..++|.+++++|+++|++|+.+.++.... +++ +.||. |+||+|+++ |..|+||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 456666666699999999999999999999985332 444 59999 999999999 9999999999999985
No 55
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.45 E-value=5.1e-13 Score=92.60 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=56.0
Q ss_pred EeCCChhHHHHHHHHHhcCCCeEEEEeCCCC---hhHH-hhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 92 QYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 92 ~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~---~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
....||+|++++++|+++|++|+.+.++... .+++ ++||.|+||+|+++|..++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4567999999999999999999999987543 2344 59999999999999999999999999984
No 56
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.42 E-value=1.5e-12 Score=89.71 Aligned_cols=69 Identities=25% Similarity=0.472 Sum_probs=60.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-hHHh-hCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
+|+||..++||+|.+++.+|.+.|++|+.++++.... .+++ +++..+||+|++||+.++++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 6899999999999999999999999999999974432 2343 6788999999999999999999999984
No 57
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.8e-12 Score=104.50 Aligned_cols=98 Identities=21% Similarity=0.357 Sum_probs=84.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC-hhHHh-hCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCCCC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKA 164 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~-~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~~~ 164 (210)
.++|++++..+.+.-+|++|+..|++||.+.+.... .++++ ..|.|++|+|.+||..|.+|.+|++||+++|+-.+.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl~Gk- 81 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGLAGK- 81 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCcCCC-
Confidence 479999999999999999999999999999997665 56666 579999999999999999999999999999985443
Q ss_pred CCCCChHHHHHHHHHHHhhhhhHHHH
Q 028332 165 DSPSGDDEEKKWRGQFQLHRKTYSKI 190 (210)
Q Consensus 165 ~~~~~~~~~~~w~~~~~~~l~~~l~~ 190 (210)
.++...|++-+.+.+..+...
T Consensus 82 -----t~~E~a~vD~i~d~~~D~~~~ 102 (206)
T KOG1695|consen 82 -----TEEEEAWVDMIVDQFKDFRWE 102 (206)
T ss_pred -----CHHHHHHHHHHHHhhhhHHHH
Confidence 667777887777766666554
No 58
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.38 E-value=3.5e-12 Score=107.44 Aligned_cols=110 Identities=26% Similarity=0.427 Sum_probs=92.6
Q ss_pred CCCCCCcEEEEEeCC-------ChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHH
Q 028332 81 TDLVPKEVVLYQYEA-------CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQ 153 (210)
Q Consensus 81 ~~~~~~~v~Ly~~~~-------cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~y 153 (210)
.+...+.|.||+|+. ||||.|+..+|+..+||||.++.... ..+..|++|.++.||+.+.||..|+.+
T Consensus 39 ~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-----~rSr~G~lPFIELNGe~iaDS~~I~~~ 113 (281)
T KOG4244|consen 39 TDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-----RRSRNGTLPFIELNGEHIADSDLIEDR 113 (281)
T ss_pred hccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-----eeccCCCcceEEeCCeeccccHHHHHH
Confidence 567788999999987 89999999999999999999876532 368999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCCChHHHHHHHHHHHhhhhhHHHHhhhccc
Q 028332 154 LDQKLTPKRKADSPSGDDEEKKWRGQFQLHRKTYSKICWSCSN 196 (210)
Q Consensus 154 L~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~l~~~~~~~~ 196 (210)
|.++++-+.... ..+++...+....+++|+.+.+...+...+
T Consensus 114 L~~hf~~~~~L~-~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~ 155 (281)
T KOG4244|consen 114 LRKHFKIPDDLS-AEQRAQSRALSRMADNHLFWILLYYKGADD 155 (281)
T ss_pred HHHHcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 999988765322 233888888889999999998876655544
No 59
>PRK10638 glutaredoxin 3; Provisional
Probab=99.34 E-value=7.9e-12 Score=88.62 Aligned_cols=70 Identities=21% Similarity=0.509 Sum_probs=61.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHH-hhCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
.|+||+.+.||||++++.+|+++||+|+.++++... ..++ +.+|..+||+|++||..|++..++..+-.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 599999999999999999999999999999997543 2334 488999999999999999999998886543
No 60
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.33 E-value=4.7e-12 Score=88.33 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhh
Q 028332 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 94 ~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
+.+++|.|++++|++.|+||+.+..... -..+|.|+||+|++||++|+||.+|+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~----~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANA----EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCc----cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 4467899999999999999999854321 12678899999999999999999999999864
No 61
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.27 E-value=3.8e-11 Score=88.31 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=62.6
Q ss_pred CCCCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-hH----H-hhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 82 DLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE----I-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 82 ~~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-~~----l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
.+.+++|++|+.++||||.+++.+|..+|++|+.++++.... .+ + ++++..+||+|++||+.|++..++.....
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHI 83 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHH
Confidence 356788999999999999999999999999999999974322 11 3 36789999999999999999999887543
No 62
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.27 E-value=3.6e-11 Score=83.07 Aligned_cols=66 Identities=20% Similarity=0.407 Sum_probs=57.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHH-hhCCCCcccEEEECCeEeecHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIID 152 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~ 152 (210)
.++||+.++||+|++++.+|+++||+|+.++++... .+++ ++++..++|++++||..|++..++..
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 589999999999999999999999999999986432 3344 48899999999999999999988765
No 63
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.22 E-value=8.9e-11 Score=83.98 Aligned_cols=72 Identities=17% Similarity=0.480 Sum_probs=59.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCC--hhHHh-hCCC--CcccEEEECCeEeecHHHHHHHHHhh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~--~~~l~-~~p~--g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
+++|+.++||||.+++.+|..+ +++|+.++++... ..++. ..+. .+||+|++||+.++++.+|.+++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 7899999999999999999998 4678888876332 33343 4444 79999999999999999999999987
Q ss_pred cC
Q 028332 158 LT 159 (210)
Q Consensus 158 ~~ 159 (210)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 65
No 64
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.5e-11 Score=82.94 Aligned_cols=70 Identities=21% Similarity=0.498 Sum_probs=59.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh--h-H-Hh-hCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--K-E-IK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~--~-~-l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
.+++|..++||||.+++-+|..+|++|++++++.... . + ++ .++..+||+|++||..++.+.++.++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 5899999999999999999999999999999975542 1 2 44 55899999999999999988887776554
No 65
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.20 E-value=1.6e-10 Score=82.19 Aligned_cols=73 Identities=21% Similarity=0.459 Sum_probs=62.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cCCCeEEEEeCCCC--hhHHh-hCCC--CcccEEEECCeEeecHHHHHHHHHh
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~-----~gi~y~~v~vd~~~--~~~l~-~~p~--g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
.|++|+.++||+|.+++-+|.+ .|++|+.++++... ..++. +.+. .+||+|++||+.+++..+|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4899999999999999999999 89999999987432 33443 4443 6899999999999999999999998
Q ss_pred hcC
Q 028332 157 KLT 159 (210)
Q Consensus 157 ~~~ 159 (210)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 875
No 66
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.18 E-value=1.9e-10 Score=79.30 Aligned_cols=69 Identities=22% Similarity=0.465 Sum_probs=57.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHH-hhCCCC-cccEEEECCeEeecHHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYK-KVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l-~~~p~g-~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
+|+||+.+.||+|.+++.+|+++||+|+.++++... ..++ +..+.. +||+|++||+.+++..++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 389999999999999999999999999999997431 1223 345555 99999999999999999988654
No 67
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.18 E-value=1.1e-10 Score=85.46 Aligned_cols=73 Identities=26% Similarity=0.471 Sum_probs=61.3
Q ss_pred CCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hCCCCcccEEEECCeEeecHHHHHHHH
Q 028332 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (210)
Q Consensus 83 ~~~~~v~Ly~~-----~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL 154 (210)
+..++|.+|.. ++||||.+++.+|..+||+|+.++++... ..+++ +++..+||.+++||+.|++..++.+..
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 55688999987 89999999999999999999999885321 22343 788999999999999999999998754
Q ss_pred H
Q 028332 155 D 155 (210)
Q Consensus 155 ~ 155 (210)
.
T Consensus 89 ~ 89 (97)
T TIGR00365 89 Q 89 (97)
T ss_pred H
Confidence 4
No 68
>PHA03050 glutaredoxin; Provisional
Probab=99.18 E-value=1.6e-10 Score=86.32 Aligned_cols=70 Identities=17% Similarity=0.471 Sum_probs=60.4
Q ss_pred CCCCcEEEEEeCCChhHHHHHHHHHhcCC---CeEEEEeCCC-Ch----hHHh-hCCCCcccEEEECCeEeecHHHHHH
Q 028332 83 LVPKEVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPI-NK----KEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (210)
Q Consensus 83 ~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi---~y~~v~vd~~-~~----~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~ 152 (210)
+..+.|++|+.++||||.+++-+|.++|+ +|+.++++.. .. .+++ .++..+||+|++||++|++..++..
T Consensus 10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 56678999999999999999999999999 8999999742 21 2343 7899999999999999999999887
No 69
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.17 E-value=2.3e-10 Score=77.01 Aligned_cols=67 Identities=22% Similarity=0.565 Sum_probs=58.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hCCCCcccEEEECCeEeecHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQ 153 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~y 153 (210)
+|++|+.++||+|++++.+|.+++++|+.++++... ..+++ +++..++|+|++||..++++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999999886433 23444 78999999999999999999988764
No 70
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.16 E-value=2.3e-10 Score=79.51 Aligned_cols=57 Identities=32% Similarity=0.463 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhh
Q 028332 96 CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 96 cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
+|+|.|+.++|+..|++|+.+..+.. ..+|.|++|+|+++|+.+.||..|++||.++
T Consensus 16 sp~clk~~~~Lr~~~~~~~v~~~~n~-----~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 16 DPECLAVLAYLKFAGAPLKVVPSNNP-----WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CHHHHHHHHHHHcCCCCEEEEecCCC-----CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 79999999999999999998865421 2479999999999999999999999999875
No 71
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.12 E-value=1.2e-10 Score=98.09 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=68.7
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh---H--HhhCCCCcccEEEECCeEeecHHHHHHHHHhhc
Q 028332 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK---E--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 84 ~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~---~--l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~ 158 (210)
.+..++||.++.+-.++||++++.|+||+|+...|++...+ . +.+||.|.||||+++..+|.|+.-||+|++++|
T Consensus 23 ~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf 102 (325)
T KOG4420|consen 23 PRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTF 102 (325)
T ss_pred chhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhh
Confidence 34459999999999999999999999999999999865432 2 459999999999999999999999999999988
Q ss_pred CCC
Q 028332 159 TPK 161 (210)
Q Consensus 159 ~~~ 161 (210)
-..
T Consensus 103 ~ge 105 (325)
T KOG4420|consen 103 TGE 105 (325)
T ss_pred ccc
Confidence 654
No 72
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.09 E-value=7.8e-10 Score=79.73 Aligned_cols=73 Identities=19% Similarity=0.412 Sum_probs=61.4
Q ss_pred CCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHH-hhCCCCcccEEEECCeEeecHHHHHHHH
Q 028332 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (210)
Q Consensus 83 ~~~~~v~Ly~~-----~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL 154 (210)
+..++|++|.. ++||||.+++.+|..+|++|+.++++... ..++ +.++..+||+|++||..|++...+.+..
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 45688999987 79999999999999999999999986432 1234 3788999999999999999999998854
Q ss_pred H
Q 028332 155 D 155 (210)
Q Consensus 155 ~ 155 (210)
.
T Consensus 85 ~ 85 (90)
T cd03028 85 E 85 (90)
T ss_pred H
Confidence 4
No 73
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.08 E-value=6.2e-10 Score=78.93 Aligned_cols=61 Identities=10% Similarity=0.420 Sum_probs=50.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh--hHHhhCCCCcccEEEECCeEeecH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEIKWSEYKKVPILMVDGEQLVDS 147 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~--~~l~~~p~g~VP~L~~~g~~l~eS 147 (210)
+++||..++||+|.+++.+|.++||+|+.++++.... .+++.++..+||+|+++|..+.+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf 64 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSGF 64 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEecC
Confidence 5899999999999999999999999999999974322 124567899999999998776543
No 74
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.08 E-value=7.5e-10 Score=77.38 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=59.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
|++|+.++||+|.+++.+|+++|++|+.++++... ..+++ .++...||++++||..+++..++..+.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999997432 22343 67899999999999999999999887654
No 75
>PRK10824 glutaredoxin-4; Provisional
Probab=99.06 E-value=5.7e-10 Score=84.21 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=61.8
Q ss_pred CCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hCCCCcccEEEECCeEeecHHHHHHHH
Q 028332 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (210)
Q Consensus 83 ~~~~~v~Ly~~-----~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL 154 (210)
+..++|.+|.. |+||||.+++.+|...|++|+.++++... +..++ .+++.+||.|++||++|+++.++....
T Consensus 12 I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 12 IAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred HhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 56789999988 59999999999999999999999886322 22344 789999999999999999999988854
Q ss_pred H
Q 028332 155 D 155 (210)
Q Consensus 155 ~ 155 (210)
.
T Consensus 92 ~ 92 (115)
T PRK10824 92 Q 92 (115)
T ss_pred H
Confidence 3
No 76
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.05 E-value=1.5e-09 Score=73.52 Aligned_cols=68 Identities=24% Similarity=0.470 Sum_probs=55.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh--hH-HhhCCCCcccEEEECCeEe--ecHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KE-IKWSEYKKVPILMVDGEQL--VDSSAIIDQL 154 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~--~~-l~~~p~g~VP~L~~~g~~l--~eS~aI~~yL 154 (210)
+++||+.++||+|++++.+|++.|++|+.++++.... .+ .+.++...||+|+++|+.+ .+...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 5899999999999999999999999999998864322 22 3478999999999999887 5555666654
No 77
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.02 E-value=2.5e-09 Score=74.72 Aligned_cols=70 Identities=19% Similarity=0.448 Sum_probs=60.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-h----HH-hhCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-K----EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-~----~l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
+|++|+.++||+|.+++.+|.+.+++|+.++++.... . ++ ++++..++|++++||..+++...|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 3899999999999999999999999999999875432 2 23 367889999999999999999999998765
No 78
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.00 E-value=1.7e-09 Score=74.59 Aligned_cols=58 Identities=19% Similarity=0.488 Sum_probs=47.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHhhCCCCcccEEEECCe-Eee
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIKWSEYKKVPILMVDGE-QLV 145 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~~~p~g~VP~L~~~g~-~l~ 145 (210)
|+||+.+.||+|++++.+|.++||+|+.++++... ..+++..+..+||+|+++|. .++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~~ 61 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSWS 61 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEEe
Confidence 58999999999999999999999999999997433 22355568889999999775 443
No 79
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.99 E-value=1e-09 Score=72.82 Aligned_cols=57 Identities=40% Similarity=0.816 Sum_probs=49.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hCCCCcccEEEECCeEe
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQL 144 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~p~g~VP~L~~~g~~l 144 (210)
|++|+.++||+|.+++.+|+++|++|+.++++... +++++ +++..++|++++||+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 68999999999999999999999999999997542 33444 66999999999999875
No 80
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.8e-09 Score=77.35 Aligned_cols=74 Identities=23% Similarity=0.485 Sum_probs=64.5
Q ss_pred CCCCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChh-H----H-hhCCCCcccEEEECCeEeecHHHHHHHHH
Q 028332 82 DLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E----I-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 82 ~~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~-~----l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~ 155 (210)
.+..+++.+|+..+||||.+++.+|...|+++.++++|....+ + + ++.+..+||.++++|+.|+++.+|..+-.
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 4667899999999999999999999999999999999865433 3 2 37889999999999999999999998654
No 81
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.94 E-value=6.6e-09 Score=72.73 Aligned_cols=69 Identities=25% Similarity=0.602 Sum_probs=58.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--eEEEEeCCCCh-hH----Hh-hCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIP--YKVVEVNPINK-KE----IK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~--y~~v~vd~~~~-~~----l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
|++|+.++||+|.+++-+|.+.+++ |+.++++.... .+ +. ..+..++|++++||..++++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 99999875432 22 33 56888999999999999999999987764
No 82
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.9e-09 Score=86.40 Aligned_cols=71 Identities=32% Similarity=0.554 Sum_probs=64.9
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEeCCCChhH-H-hhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCCCC
Q 028332 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE-I-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKA 164 (210)
Q Consensus 94 ~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~-l-~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~~~ 164 (210)
-.||||+++.+.|.++|++|.+..||...+++ + .+.|.+++|+|.+||..++|+..|.++|++.++++.++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~ 91 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLP 91 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCc
Confidence 34999999999999999999999999887776 3 58999999999999999999999999999999987654
No 83
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.93 E-value=6.1e-09 Score=70.36 Aligned_cols=61 Identities=34% Similarity=0.733 Sum_probs=51.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh--hHH-hhCCCCcccEEEECCeEeecH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEI-KWSEYKKVPILMVDGEQLVDS 147 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~--~~l-~~~p~g~VP~L~~~g~~l~eS 147 (210)
.+++|+.++||+|.+++.+|.++|++|..++++.... .++ ++++.++||+|+++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 3799999999999999999999999999999875322 234 378999999999999877664
No 84
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.87 E-value=1.5e-08 Score=69.64 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=54.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh--hHH-hhC-CCCcccEEEE-CCeEeecH--HHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEI-KWS-EYKKVPILMV-DGEQLVDS--SAIIDQLD 155 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~--~~l-~~~-p~g~VP~L~~-~g~~l~eS--~aI~~yL~ 155 (210)
.|+||+.++||+|++++.+|.++|++|+.++++.... ..+ +++ +...||+|+. ||..+.+. ..|+.+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 4789999999999999999999999999988864322 223 366 8999999975 77777655 45666664
No 85
>PLN02907 glutamate-tRNA ligase
Probab=98.70 E-value=6.7e-08 Score=93.14 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=68.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEE-CCeEeecHHHHHHHHHhhcCCCC-CCC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKR-KAD 165 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~~~~~~~~-~~~ 165 (210)
++||+.+.+ .+.++.++|++.|++|+.++ .+|.|+||+|++ ||..|+||.+|++||++.++... .+.
T Consensus 3 ~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~----------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~ 71 (722)
T PLN02907 3 AKLSFPPDS-PPLAVIAAAKVAGVPLTIDP----------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQ 71 (722)
T ss_pred EEEEECCCC-ChHHHHHHHHHcCCCcEEee----------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCC
Confidence 789998886 46679999999999999975 268999999995 88999999999999999987653 332
Q ss_pred CCCChHHHHHHHHHHHh
Q 028332 166 SPSGDDEEKKWRGQFQL 182 (210)
Q Consensus 166 ~~~~~~~~~~w~~~~~~ 182 (210)
...+++++.+|+.|.+.
T Consensus 72 d~~erAqV~qWL~~~~~ 88 (722)
T PLN02907 72 DAFESSQVDEWLDYAPT 88 (722)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 22248889999988754
No 86
>PTZ00062 glutaredoxin; Provisional
Probab=98.69 E-value=9.4e-08 Score=79.06 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=62.2
Q ss_pred CCCCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hCCCCcccEEEECCeEeecHHHHHH
Q 028332 81 TDLVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (210)
Q Consensus 81 ~~~~~~~v~Ly~~-----~~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~ 152 (210)
.-+..++|.||.. |.||||++++.+|.+.||+|+.++++... +..++ .++..+||.|.+||+.|++...+.+
T Consensus 108 ~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 108 RLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred HHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 3466789999988 68999999999999999999999886332 22343 7889999999999999999999887
Q ss_pred HHH
Q 028332 153 QLD 155 (210)
Q Consensus 153 yL~ 155 (210)
...
T Consensus 188 l~~ 190 (204)
T PTZ00062 188 LYE 190 (204)
T ss_pred HHH
Confidence 443
No 87
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.56 E-value=4.4e-07 Score=71.40 Aligned_cols=68 Identities=24% Similarity=0.421 Sum_probs=56.7
Q ss_pred cEEEEEeC------CChhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hCC----CCcccEEEECCeEeecHHHHHHH
Q 028332 87 EVVLYQYE------ACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSE----YKKVPILMVDGEQLVDSSAIIDQ 153 (210)
Q Consensus 87 ~v~Ly~~~------~cp~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~p----~g~VP~L~~~g~~l~eS~aI~~y 153 (210)
.|+||..+ .||+|.+++.+|+.++|+|++++|++.. .++++ +.+ ..+||.|+++|..|++..++.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 37899999 8999999999999999999999997532 34454 333 48999999999999999998884
Q ss_pred H
Q 028332 154 L 154 (210)
Q Consensus 154 L 154 (210)
-
T Consensus 81 ~ 81 (147)
T cd03031 81 N 81 (147)
T ss_pred H
Confidence 3
No 88
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.52 E-value=4.1e-07 Score=82.69 Aligned_cols=66 Identities=24% Similarity=0.519 Sum_probs=55.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCCh-hHH-h---------hCCCCcccEEEECCeEeecHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-K---------WSEYKKVPILMVDGEQLVDSSAIID 152 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~-~~l-~---------~~p~g~VP~L~~~g~~l~eS~aI~~ 152 (210)
.|++|+.++||+|.+++.+|..+||+|+.++++.... .++ + .++..+||++++||.+|++..++..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 5999999999999999999999999999999973321 121 1 2477899999999999999998876
No 89
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.3e-07 Score=66.79 Aligned_cols=74 Identities=22% Similarity=0.473 Sum_probs=60.0
Q ss_pred CCCCCcEEEEE-----eCCChhHHHHHHHHHhcC-CCeEEEEe--CCCChhHHh-hCCCCcccEEEECCeEeecHHHHHH
Q 028332 82 DLVPKEVVLYQ-----YEACPFCNKVKAFLDYYD-IPYKVVEV--NPINKKEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (210)
Q Consensus 82 ~~~~~~v~Ly~-----~~~cp~c~kv~~~L~~~g-i~y~~v~v--d~~~~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~ 152 (210)
.+.+++|.||. +|.|+|+.++--+|...| ++|..++| |..-+..++ .+.+.++|.|.++|+.|++|..|.+
T Consensus 11 ~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~E 90 (105)
T COG0278 11 QIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVRE 90 (105)
T ss_pred HhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHH
Confidence 35678899994 788999999999999999 67777776 222233455 7899999999999999999998887
Q ss_pred HHH
Q 028332 153 QLD 155 (210)
Q Consensus 153 yL~ 155 (210)
-..
T Consensus 91 m~q 93 (105)
T COG0278 91 MYQ 93 (105)
T ss_pred HHH
Confidence 554
No 90
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.16 E-value=8.2e-06 Score=54.77 Aligned_cols=58 Identities=12% Similarity=0.360 Sum_probs=44.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHH-hhCCCCcccEEEECCeEeec
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVD 146 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~~g~~l~e 146 (210)
++++|+.++||+|.+++-+|++. +++|..++++ ..+++ +..+...+|++.+||..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~~~l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--EFPDLADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--cCHhHHHHcCCcccCEEEECCEEEEe
Confidence 48899999999999999999875 5666666654 22333 35667789999999987764
No 91
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.90 E-value=7.1e-05 Score=51.82 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHhcCCC---eEEEEeCCCChhHHhhCCCCcccEEEE-CCeEeecHHHHHHHHH
Q 028332 96 CPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (210)
Q Consensus 96 cp~c~kv~~~L~~~gi~---y~~v~vd~~~~~~l~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~ 155 (210)
+|-|..+.++|+..+.+ |+++..+... ++|.|++|+|.+ +|+.+.+...|++||.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-----~Sptg~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNPW-----LSPTGELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCCC-----cCCCCCCCEEEECCCcEEECHHHHHHhhC
Confidence 68999999999999999 8888875222 589999999999 9999999999999983
No 92
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.9e-05 Score=64.49 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=61.1
Q ss_pred CCCCcEEEEE-----eCCChhHHHHHHHHHhcCCCeEEEEeCC--CChhHHh-hCCCCcccEEEECCeEeecHHHHHHHH
Q 028332 83 LVPKEVVLYQ-----YEACPFCNKVKAFLDYYDIPYKVVEVNP--INKKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (210)
Q Consensus 83 ~~~~~v~Ly~-----~~~cp~c~kv~~~L~~~gi~y~~v~vd~--~~~~~l~-~~p~g~VP~L~~~g~~l~eS~aI~~yL 154 (210)
...++++||. .|.|+|++++.-+|.+.|++|...+|-. .-+..+| .+.+.++|.|.++|+.++++..|.+-+
T Consensus 136 v~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 136 VKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 4567899994 7789999999999999999999988732 1233365 889999999999999999999888766
Q ss_pred Hh
Q 028332 155 DQ 156 (210)
Q Consensus 155 ~~ 156 (210)
.+
T Consensus 216 ~~ 217 (227)
T KOG0911|consen 216 EK 217 (227)
T ss_pred hc
Confidence 53
No 93
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.88 E-value=1.6e-05 Score=59.41 Aligned_cols=39 Identities=31% Similarity=0.747 Sum_probs=33.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~l 126 (210)
|+||+.+.||+|++++-+|+++|++|+.+++. +....++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el 41 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEEL 41 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHH
Confidence 58999999999999999999999999999985 3344443
No 94
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.83 E-value=0.00014 Score=52.81 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=50.8
Q ss_pred EEEEEeCCC------hhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hC----CCCcccEEEECCeEeecHHHHHHH
Q 028332 88 VVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WS----EYKKVPILMVDGEQLVDSSAIIDQ 153 (210)
Q Consensus 88 v~Ly~~~~c------p~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~----p~g~VP~L~~~g~~l~eS~aI~~y 153 (210)
|++|....+ -.|+.++.+|..+||+|+.++|+... +.++. .. +..+||.|+++|.++++..++...
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 567765554 46889999999999999999997432 23333 33 458999999999999999888773
No 95
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.82 E-value=3.4e-05 Score=59.46 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=31.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd 119 (210)
|++||+.+.||+|++++-+|.++||+|+.+++.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 489999999999999999999999999999984
No 96
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.78 E-value=4.9e-05 Score=57.07 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=31.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd 119 (210)
|+++|+.+.|++|++++.+|+++||+|+.+++.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 489999999999999999999999999999984
No 97
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.75 E-value=5.7e-05 Score=55.61 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=30.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd 119 (210)
|++|+.+.||+|++++.+|+++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999999985
No 98
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.71 E-value=8.5e-05 Score=57.29 Aligned_cols=39 Identities=33% Similarity=0.580 Sum_probs=34.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKE 125 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~ 125 (210)
||++|+.+.|+.|++++.+|.++||+|+.+++. +...++
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~e 41 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDE 41 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHH
Confidence 589999999999999999999999999999984 444554
No 99
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.70 E-value=0.00024 Score=49.31 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=43.8
Q ss_pred EEEEEeCCChhHHHH----HHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEee
Q 028332 88 VVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV 145 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv----~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~ 145 (210)
+.+|. ++||.|..+ +.++.+.|++++.+.+| +.++....+...+|+|.+||+.+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNEILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHcCCCcCCEEEECCEEEE
Confidence 56776 999999998 66888899999998887 233444568889999999997664
No 100
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.68 E-value=9.1e-05 Score=57.18 Aligned_cols=39 Identities=28% Similarity=0.666 Sum_probs=34.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKE 125 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~ 125 (210)
|+++|+.+.|+.|++++.+|.++||+|+++++. +...++
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~e 41 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEE 41 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHH
Confidence 589999999999999999999999999999985 445555
No 101
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.56 E-value=0.00016 Score=53.57 Aligned_cols=40 Identities=15% Similarity=0.445 Sum_probs=34.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEIK 127 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~l~ 127 (210)
|++|+.+.|+.|++++.+|.++|++|+++++. +...++++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~ 42 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLE 42 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHH
Confidence 58999999999999999999999999999984 55566543
No 102
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.54 E-value=0.00075 Score=47.43 Aligned_cols=55 Identities=25% Similarity=0.550 Sum_probs=41.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc--CCCeEEEEeCCCChhHHhhCCCCcccEEEECC
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY--DIPYKVVEVNPINKKEIKWSEYKKVPILMVDG 141 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~--gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g 141 (210)
+++||+.++|+.|..++..|... ..+|+...+|....+++...-.-.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEEcC
Confidence 48999999999999999999965 45566666666566666533335899999988
No 103
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.51 E-value=0.00022 Score=53.57 Aligned_cols=40 Identities=18% Similarity=0.386 Sum_probs=34.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~l 126 (210)
.++||+.+.|+.|++++.+|+++|++|+++++. +...+++
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL 42 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETL 42 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHH
Confidence 379999999999999999999999999999883 4455554
No 104
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00057 Score=56.36 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCC-CCCCCCChHHHHH
Q 028332 97 PFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR-KADSPSGDDEEKK 175 (210)
Q Consensus 97 p~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~-~~~~~~~~~~~~~ 175 (210)
.-|..|+.+|++.++||.++.-+-.. .++|.|+||.|-++.+.+.|-..|+.+++.+-..-. ..+.. ++++.+.
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~Nae----fmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~-qkadmra 109 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRANAE----FMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSED-QKADMRA 109 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecCCcc----ccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhH-HHHHHHH
Confidence 35899999999999999998653211 279999999999999999999999999998742211 22222 2677777
Q ss_pred HHHHHHhhhhhH
Q 028332 176 WRGQFQLHRKTY 187 (210)
Q Consensus 176 w~~~~~~~l~~~ 187 (210)
.++.+++.+.-.
T Consensus 110 ~vslVen~~t~a 121 (257)
T KOG3027|consen 110 YVSLVENLLTTA 121 (257)
T ss_pred HHHHHHHHHHHH
Confidence 776666654433
No 105
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.48 E-value=0.00018 Score=54.18 Aligned_cols=32 Identities=22% Similarity=0.661 Sum_probs=30.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd 119 (210)
++||+.+.||+|++++.+|+++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999999985
No 106
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.47 E-value=0.0016 Score=44.74 Aligned_cols=56 Identities=18% Similarity=0.429 Sum_probs=40.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCeEEEEeCCCChhH-HhhCCCCcccEEEECCe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKE-IKWSEYKKVPILMVDGE 142 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~----~gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~~g~ 142 (210)
++++|+.++||+|..+.-.|.. .+..++...+|....++ .+..+...+|++.+||.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCE
Confidence 4789999999999998888764 35445555666434334 34567778999999886
No 107
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00051 Score=52.00 Aligned_cols=39 Identities=26% Similarity=0.562 Sum_probs=34.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKE 125 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~ 125 (210)
+++||+.+.|.-|+|++.+|+++||+|+++++. +..+++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~e 42 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREE 42 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHH
Confidence 699999999999999999999999999999873 555555
No 108
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.29 E-value=0.00063 Score=52.14 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=34.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKE 125 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~ 125 (210)
.++||+++.|.-|+|++.+|+++||+|+++++. +...++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~e 42 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADT 42 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHH
Confidence 689999999999999999999999999999873 444444
No 109
>PRK10853 putative reductase; Provisional
Probab=97.28 E-value=0.0005 Score=52.06 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=34.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~l 126 (210)
|+++|+++.|.-|+|++.+|+++|++|+++++- +...+++
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL 42 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELL 42 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHH
Confidence 489999999999999999999999999999873 4555554
No 110
>PRK10026 arsenate reductase; Provisional
Probab=97.17 E-value=0.00098 Score=52.07 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=34.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEe--CCCChhH
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEV--NPINKKE 125 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~v--d~~~~~~ 125 (210)
.++++|+++.|.-|+|++.+|.++|++|+++++ ++...++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~e 43 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDE 43 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHH
Confidence 368999999999999999999999999999987 3445555
No 111
>PHA02125 thioredoxin-like protein
Probab=97.16 E-value=0.0015 Score=45.00 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=40.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHH-hhCCCCcccEEEECCeE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQ 143 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~~g~~ 143 (210)
|+.+|+.++||.|+.+.-.|+. +.++.+.+|.....++ +...-..+|++. +|+.
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~~~l~~~~~v~~~PT~~-~g~~ 55 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDEGVELTAKHHIRSLPTLV-NTST 55 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCCCHHHHHHcCCceeCeEE-CCEE
Confidence 5889999999999999999874 5677777775444454 366778999987 5543
No 112
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0028 Score=44.00 Aligned_cols=57 Identities=26% Similarity=0.613 Sum_probs=46.0
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCC------------ChhH---HhhCCCCcccEEEE-CCeEee
Q 028332 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI------------NKKE---IKWSEYKKVPILMV-DGEQLV 145 (210)
Q Consensus 89 ~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~------------~~~~---l~~~p~g~VP~L~~-~g~~l~ 145 (210)
+||+...||-|..+...|+..+++|+.+++... ..++ .+.+++-.+|.|.. ||+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 899999999999999999999999999998421 1222 55778889998875 677665
No 113
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.99 E-value=0.0029 Score=45.33 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=43.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhH-HhhCCCCcccEEEECCeEee
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMVDGEQLV 145 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~~g~~l~ 145 (210)
.+.+|..++||+|..+..++.+. ++.|+.++++ ..++ .+..+-..+|.+++||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCCccCCEEEECCEEEE
Confidence 58889999999999988887654 5777777765 2233 34667778999999998765
No 114
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.92 E-value=0.002 Score=48.17 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=33.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~l 126 (210)
|++|+++.|.-|++++.+|+++|++|+.+++. +...+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el 41 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAEL 41 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHH
Confidence 58999999999999999999999999999873 4455553
No 115
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.89 E-value=0.0082 Score=41.46 Aligned_cols=57 Identities=18% Similarity=0.417 Sum_probs=41.4
Q ss_pred EEEEEeCCChhHHHHHH----HHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecH
Q 028332 88 VVLYQYEACPFCNKVKA----FLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDS 147 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~----~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS 147 (210)
+++ ..+.||+|.++.. ++.+.|+.++.+++ ...+++...+-..+|.|++||+.++..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEIEKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHHHHTT-SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHHHHcCCCCCCEEEECCEEEEEe
Confidence 566 5677999996666 44566877777765 345556778899999999999876554
No 116
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.89 E-value=0.0022 Score=48.14 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=33.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~l 126 (210)
+++|+.+.|+-|+|++.+|+++|++|+.+++. +...+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el 41 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSEL 41 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHH
Confidence 58999999999999999999999999999873 4555554
No 117
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.02 Score=49.92 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEE-CCeEeecHHHHHHHHHhhcCC-CCCCCC-CCChHH
Q 028332 96 CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTP-KRKADS-PSGDDE 172 (210)
Q Consensus 96 cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~-~g~~l~eS~aI~~yL~~~~~~-~~~~~~-~~~~~~ 172 (210)
|+-|..+.++++..+-|.+++..+..- .+|.|++|+|+. +|+.+.+-.-|+.+|...-.. ....+. ..+.+.
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~~-----~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~ 91 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNPW-----RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLAD 91 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCCC-----CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHH
Confidence 899999999999999666665543211 378999999996 669999999999999984111 111111 233778
Q ss_pred HHHHHHHHHhhhhhHHHHhhhc
Q 028332 173 EKKWRGQFQLHRKTYSKICWSC 194 (210)
Q Consensus 173 ~~~w~~~~~~~l~~~l~~~~~~ 194 (210)
...|..|+++.+..++..-.+.
T Consensus 92 ~~a~~sll~~~l~~a~~~t~~v 113 (313)
T KOG3028|consen 92 TLAFMSLLEENLEPALLYTFWV 113 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999998887776543333
No 118
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.61 E-value=0.0069 Score=37.63 Aligned_cols=52 Identities=29% Similarity=0.537 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHH-----hcCCCeEEEEeCCCChhH--HhhCCCCcccEEEE
Q 028332 88 VVLYQYEACPFCNKVKAFLD-----YYDIPYKVVEVNPINKKE--IKWSEYKKVPILMV 139 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~-----~~gi~y~~v~vd~~~~~~--l~~~p~g~VP~L~~ 139 (210)
+.+|...+|++|.+++..+. ..++.+..++++...... ....+...+|.+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 46788999999999999999 556777777765433222 13678899999886
No 119
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.013 Score=50.18 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=69.3
Q ss_pred ccccCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHhcCCC----eEEEEe--CC------C-----Ch------------
Q 028332 73 VYAKEPLPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEV--NP------I-----NK------------ 123 (210)
Q Consensus 73 ~~~~~~~~~~~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~----y~~v~v--d~------~-----~~------------ 123 (210)
...+++..-.-..+.+.||..-.||++.+..++++.+|++ +..+.- +. . +.
T Consensus 23 ~iSkd~~~~~pakgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~ 102 (319)
T KOG2903|consen 23 TISKDHPIFKPAKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLN 102 (319)
T ss_pred ccCCCCCccCCCCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccc
Confidence 3444444322233789999999999999999999999975 332211 00 0 00
Q ss_pred -----hHH-h-----hCCCCcccEEEE---CCeEeecHHHHHHHHHhhcC---C-CC--C--CCCCCChHHHHHHHHHHH
Q 028332 124 -----KEI-K-----WSEYKKVPILMV---DGEQLVDSSAIIDQLDQKLT---P-KR--K--ADSPSGDDEEKKWRGQFQ 181 (210)
Q Consensus 124 -----~~l-~-----~~p~g~VP~L~~---~g~~l~eS~aI~~yL~~~~~---~-~~--~--~~~~~~~~~~~~w~~~~~ 181 (210)
.++ . .++.-+||+|.| ...+--||.+|++.+...|. . .. . .-|...+++..+|.+|+-
T Consensus 103 g~k~l~elY~~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy 182 (319)
T KOG2903|consen 103 GAKRLRELYYIASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVY 182 (319)
T ss_pred cchhHHHHHhhcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceec
Confidence 011 1 224568999988 34456899999999984332 2 11 1 112223788888888886
Q ss_pred hhh
Q 028332 182 LHR 184 (210)
Q Consensus 182 ~~l 184 (210)
+..
T Consensus 183 ~~I 185 (319)
T KOG2903|consen 183 DKI 185 (319)
T ss_pred ccc
Confidence 543
No 120
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.27 E-value=0.032 Score=41.28 Aligned_cols=35 Identities=26% Similarity=0.668 Sum_probs=25.0
Q ss_pred EEeCCChhHHHHHHHHHhcCCCeEEEEeC--CCChhH
Q 028332 91 YQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKE 125 (210)
Q Consensus 91 y~~~~cp~c~kv~~~L~~~gi~y~~v~vd--~~~~~~ 125 (210)
|+.+.|.-|+++..+|+++|++|+.+++. +....+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~e 37 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREE 37 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHH
Confidence 89999999999999999999999999884 344444
No 121
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.12 E-value=0.11 Score=38.17 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=44.1
Q ss_pred EEEEEeCCC------hhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh-hC---------CCCcccEEEECCeEeecHHH
Q 028332 88 VVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WS---------EYKKVPILMVDGEQLVDSSA 149 (210)
Q Consensus 88 v~Ly~~~~c------p~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~-~~---------p~g~VP~L~~~g~~l~eS~a 149 (210)
|++|....+ -.++++..+|.-++|+|+.+++.... +..++ .. +..-.|.|+.||+.+++-.+
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 677765554 35679999999999999999986422 22233 23 33445799999999999988
Q ss_pred HHHHHH
Q 028332 150 IIDQLD 155 (210)
Q Consensus 150 I~~yL~ 155 (210)
+.+.-+
T Consensus 83 f~ea~E 88 (99)
T PF04908_consen 83 FEEANE 88 (99)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 877554
No 122
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.87 E-value=0.15 Score=38.13 Aligned_cols=66 Identities=21% Similarity=0.494 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHhc-----CCCeEEEEeCCCChhH-Hh-hC-CCCcccEEEE-CCe-------------EeecHHHHHHH
Q 028332 96 CPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IK-WS-EYKKVPILMV-DGE-------------QLVDSSAIIDQ 153 (210)
Q Consensus 96 cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~-l~-~~-p~g~VP~L~~-~g~-------------~l~eS~aI~~y 153 (210)
||.|..++-+|... .++.+.+... ..+.+ +. +. .+...|+|+. +|. .|.|...|++|
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~-RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFP-RPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCC-CchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 99999999998753 3444443322 12233 34 33 3677999986 332 79999999999
Q ss_pred HHhhcCCCC
Q 028332 154 LDQKLTPKR 162 (210)
Q Consensus 154 L~~~~~~~~ 162 (210)
|.++|+.+.
T Consensus 103 La~r~g~p~ 111 (112)
T PF11287_consen 103 LAERHGFPR 111 (112)
T ss_pred HHHHcCCCC
Confidence 999998653
No 123
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.45 E-value=0.54 Score=32.98 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=46.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh----cCCCeEEEEeCCCChhH-HhhCCCCcccEEEE--CCeEe------ecHHHHHH
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL------VDSSAIID 152 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~----~gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~--~g~~l------~eS~aI~~ 152 (210)
.-+..|+.++|+.|+...-.+.+ .+-++....+|.....+ .+...-..+|.+.. +|..+ .+...|.+
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 35677888999999988766643 22255666665444344 34667888998874 77654 24456777
Q ss_pred HHHh
Q 028332 153 QLDQ 156 (210)
Q Consensus 153 yL~~ 156 (210)
+|++
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7765
No 124
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.43 E-value=0.24 Score=37.38 Aligned_cols=58 Identities=17% Similarity=0.431 Sum_probs=37.1
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCCeEEEEeCCCC------hhH---H-hh----CCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFL----DYYDIPYKVVEVNPIN------KKE---I-KW----SEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L----~~~gi~y~~v~vd~~~------~~~---l-~~----~p~g~VP~L~~--~g~~l 144 (210)
.+..|+.++||+|+++.=.| ++.++++-.++++... ..+ + +. .....+|.++. +|+.+
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 47778999999999865555 4456777777776321 112 1 21 23456998875 77544
No 125
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.15 Score=44.04 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCeE-EE-EeCC-----------C-C----hh--------HH--h----hCCC
Q 028332 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYK-VV-EVNP-----------I-N----KK--------EI--K----WSEY 131 (210)
Q Consensus 84 ~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~-~v-~vd~-----------~-~----~~--------~l--~----~~p~ 131 (210)
..+.+.||..-.||++++..++=+.+|+.=. .+ .+++ . . .+ ++ + .++.
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 4578999999999999999999999997521 11 1111 1 0 00 01 1 2356
Q ss_pred CcccEEEEC--Ce-EeecHHHHHHHHHhhcCCCC--CCC--CCCChHHHHHHHHHHHh
Q 028332 132 KKVPILMVD--GE-QLVDSSAIIDQLDQKLTPKR--KAD--SPSGDDEEKKWRGQFQL 182 (210)
Q Consensus 132 g~VP~L~~~--g~-~l~eS~aI~~yL~~~~~~~~--~~~--~~~~~~~~~~w~~~~~~ 182 (210)
-+||+|.|. .+ +-.||..|++-+...|..-. ..+ |.+.+.++..|.+|+-.
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~ 185 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYD 185 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcc
Confidence 789999983 33 45899999999987664321 111 12226777777777743
No 126
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=93.86 E-value=0.15 Score=37.80 Aligned_cols=53 Identities=21% Similarity=0.538 Sum_probs=35.0
Q ss_pred CCcEEEE-EeCCChhHHHHHHHHHhcC-----CCeEEEEeCCCChhHH-hhCCCCcccEEEE
Q 028332 85 PKEVVLY-QYEACPFCNKVKAFLDYYD-----IPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 85 ~~~v~Ly-~~~~cp~c~kv~~~L~~~g-----i~y~~v~vd~~~~~~l-~~~p~g~VP~L~~ 139 (210)
+..+++| +.++||+|+.++-+|++.. +.+..++++ ..+++ +...-..+|.+..
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEE
Confidence 3446665 5689999999988887543 334444444 33444 3667888998875
No 127
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=93.67 E-value=0.57 Score=31.50 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=38.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh-----cCCCeEEEEeCCCChhH-HhhCCCCcccEEEE--CCeE
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQ 143 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~-----~gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~--~g~~ 143 (210)
.-+.+|+.++|+.|.+..-.+.+ .++.+..++++. ..+ .+..+...+|.++. +|..
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCEE
Confidence 34777889999999999888877 666666665542 222 33445667998764 6653
No 128
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=93.51 E-value=0.48 Score=33.68 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=37.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~----~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l 144 (210)
.+.+|+.++|+.|+...-.+.+ .+-.+....+|....+++ +...-..+|.+.. +|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 4667788999999988877755 121244455554444443 3455678997764 67654
No 129
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.80 E-value=0.36 Score=45.55 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=43.7
Q ss_pred cEEEEEeCCChhHHHHHHHH----Hhc-CCCeEEEEeCCCChhHHh-hCCCCcccEEEECCeEeec
Q 028332 87 EVVLYQYEACPFCNKVKAFL----DYY-DIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQLVD 146 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L----~~~-gi~y~~v~vd~~~~~~l~-~~p~g~VP~L~~~g~~l~e 146 (210)
.+++|.-++||+|-++..++ .++ +|..+.+++.. .+++. ...-..||.+++||+.+..
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--~~~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--FPDLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--cHHHHHhCCceecCEEEECCEEEEe
Confidence 58899999999999766644 455 78888887753 24443 6788899999999976544
No 130
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.56 E-value=0.54 Score=38.76 Aligned_cols=55 Identities=9% Similarity=0.255 Sum_probs=37.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC---CCeEEEEeCCCChhHH-hhCCCCcccEEEEC
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYD---IPYKVVEVNPINKKEI-KWSEYKKVPILMVD 140 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~g---i~y~~v~vd~~~~~~l-~~~p~g~VP~L~~~ 140 (210)
-.|++|+-++||+|..+..++++.- -......+|....+++ +..+-..+|.+.++
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe
Confidence 3577799999999999888887542 1233334554444444 35677789999874
No 131
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=91.97 E-value=1.3 Score=30.97 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=38.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----CCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEe
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l 144 (210)
.-+..|+.++|+.|++..-.|.+. +..+....+|....+++ +...-..+|.+.. +|..+
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 346678899999999887777642 33566666665444444 3345567997764 77654
No 132
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.74 E-value=0.28 Score=45.86 Aligned_cols=71 Identities=17% Similarity=0.361 Sum_probs=47.7
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHH-hhCCCCcccEEEECCeEeecHH----HHHHHH
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVDSS----AIIDQL 154 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~~g~~l~eS~----aI~~yL 154 (210)
+-.+++|..+.||||-.+..++.+. +|..+.+ |....+++ +......||.+++||..+++.. .+++.|
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMI--DGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKL 195 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE--EchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 3468899999999999988877654 3444443 33233443 3556679999999998877643 445555
Q ss_pred Hhh
Q 028332 155 DQK 157 (210)
Q Consensus 155 ~~~ 157 (210)
.+.
T Consensus 196 ~~~ 198 (515)
T TIGR03140 196 EET 198 (515)
T ss_pred hhc
Confidence 443
No 133
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=91.70 E-value=0.72 Score=34.45 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=35.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHh------cCCCeEEEEeCCCChhH-HhhCCCC-cccEEEE---CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY------YDIPYKVVEVNPINKKE-IKWSEYK-KVPILMV---DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~------~gi~y~~v~vd~~~~~~-l~~~p~g-~VP~L~~---~g~~l 144 (210)
-+..|+.++|+.|++..-.+.. .+..|..+.++....+. ...+..| .+|.++. +|..+
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 4556788999999988766655 23456666666432221 2244443 4998764 56544
No 134
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=91.55 E-value=1.2 Score=32.86 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=38.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEee
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQLV 145 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l~ 145 (210)
.-+..|+.++|+.|+.+.-.+++. ++ ..+.+|....+++ +...-..+|++.. +|..+.
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 345667779999999888777552 34 4555554444443 3567778998864 887665
No 135
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=91.51 E-value=1.8 Score=31.63 Aligned_cols=58 Identities=12% Similarity=0.248 Sum_probs=34.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cCCCeEEEEeCCCChhHH-hhCCCCcccEEE--ECCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPINKKEI-KWSEYKKVPILM--VDGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~-----~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~--~~g~~l 144 (210)
-+..|+.++|+.|+...-.+.+ .+.......+|....+.+ +..+-..+|.+. .+|..+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEE
Confidence 5667889999999866544422 222333444443333333 345678899876 377543
No 136
>PRK10996 thioredoxin 2; Provisional
Probab=91.45 E-value=3 Score=31.91 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=37.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~----~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l 144 (210)
.+..|+-++|+.|+...-.|.+ .+-.+....+|....+++ +...-..+|.+.. +|+.+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 4667888999999976655543 233455666665555553 3556678998764 77654
No 137
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.22 E-value=0.32 Score=45.43 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHH-hhCCCCcccEEEECCeEeecH----HHHHHHH
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVDS----SAIIDQL 154 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~~g~~l~eS----~aI~~yL 154 (210)
|-.+++|..+.||||-.+..++... +|..+.++. ...+++ .......||.+++||..+++. ..|++.|
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~--~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG--ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc--hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 4468999999999999887777554 444444433 333444 355677999999999877663 3566666
Q ss_pred Hhhc
Q 028332 155 DQKL 158 (210)
Q Consensus 155 ~~~~ 158 (210)
.+..
T Consensus 195 ~~~~ 198 (517)
T PRK15317 195 DTGA 198 (517)
T ss_pred hccc
Confidence 6543
No 138
>PRK09381 trxA thioredoxin; Provisional
Probab=90.87 E-value=3.3 Score=29.70 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=36.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~----~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l 144 (210)
-+..|+.++||.|+...-.+++ .+-.+....+|....+.+ +..+-..+|.++. +|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 4666788999999987655543 222344555554443443 3446678998764 77655
No 139
>PTZ00051 thioredoxin; Provisional
Probab=90.64 E-value=1.8 Score=30.30 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=35.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc---CCCeEEEEeCCCChhH-HhhCCCCcccEEEE--CCeEe
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYY---DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~---gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~--~g~~l 144 (210)
.-+..|+.++|+.|++..-.+... ...+....+|.....+ .+...-..+|.+.. +|..+
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 356678899999999887766552 1123334444333333 33456678997764 66544
No 140
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.63 Score=40.11 Aligned_cols=69 Identities=19% Similarity=0.359 Sum_probs=52.6
Q ss_pred CCcEEEEEeCCC------hhHHHHHHHHHhcCCCeEEEEeCCCC--hhHHh--hC---CCCcccEEEECCeEeecHHHHH
Q 028332 85 PKEVVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK--WS---EYKKVPILMVDGEQLVDSSAII 151 (210)
Q Consensus 85 ~~~v~Ly~~~~c------p~c~kv~~~L~~~gi~y~~v~vd~~~--~~~l~--~~---p~g~VP~L~~~g~~l~eS~aI~ 151 (210)
.+.|++|....- --|..||.+|+-.+|-|++++|++.. ++|++ +. -.-.+|.++++|..|++...|.
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 356788753321 35889999999999999999998654 45554 22 3567999999999999999888
Q ss_pred HH
Q 028332 152 DQ 153 (210)
Q Consensus 152 ~y 153 (210)
+-
T Consensus 210 ~L 211 (281)
T KOG2824|consen 210 RL 211 (281)
T ss_pred hh
Confidence 63
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=90.51 E-value=1.1 Score=36.82 Aligned_cols=74 Identities=16% Similarity=0.425 Sum_probs=46.6
Q ss_pred CCcEEEEEe---CCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEee----c---
Q 028332 85 PKEVVLYQY---EACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQLV----D--- 146 (210)
Q Consensus 85 ~~~v~Ly~~---~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l~----e--- 146 (210)
+..+.+|.. +|||.|+.+.-++++. ++.+..+.+|....+++ +...-..+|.+.. ||..+. +
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 345778877 8999999888887654 24445566664444443 4667888998875 554332 2
Q ss_pred HHHHHHHHHhhc
Q 028332 147 SSAIIDQLDQKL 158 (210)
Q Consensus 147 S~aI~~yL~~~~ 158 (210)
-..+..+|+..+
T Consensus 100 ~~~l~~~i~~~~ 111 (215)
T TIGR02187 100 GYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHHH
Confidence 234556666554
No 142
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.46 E-value=4.2 Score=28.07 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=34.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCeEEEEeCCCChhH-HhhCCCCcccEEEE--CCe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGE 142 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~----gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~--~g~ 142 (210)
-+..|+.++|+.|+...-.+... +-.+....+|....++ .+...-..+|.+.. +|.
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 45667788899999887666442 2224455555434344 33456668998764 554
No 143
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=90.22 E-value=1.3 Score=33.28 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=37.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC----eEEEEeCCCChhHHh-hCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~----y~~v~vd~~~~~~l~-~~p~g~VP~L~~--~g~~l 144 (210)
.+.-|+-+|||.|+.+.-.|++.--. .....||....+++. ...-..+|.+.. ||+.+
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 35558999999999887777543211 234445544545543 556677998874 77765
No 144
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=89.54 E-value=4.5 Score=28.50 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=34.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~ 142 (210)
.+..|+.++||.|+...-.+.+. +..+....+|....+++ +...-..+|.+.. +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC
Confidence 58888999999999776555432 33344445554333333 3456677888764 553
No 145
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=89.34 E-value=4.5 Score=28.92 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=34.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----C-CCeEEEEeCCCChhHHhhCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY----D-IPYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~----g-i~y~~v~vd~~~~~~l~~~p~g~VP~L~~--~g~~l 144 (210)
-+..|+.++|+.|+...-.+... + -......+|.......+...-..+|.+.. +|+.+
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEE
Confidence 46678999999999776666432 2 12334444433322344556778897654 77643
No 146
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=89.16 E-value=1.8 Score=32.87 Aligned_cols=60 Identities=10% Similarity=0.318 Sum_probs=39.2
Q ss_pred EEEEEeCCChhHHHHHH-HHH------hcCCCeEEEEeCCCChhHHh---------hCCCCcccEEEE---CCeEeecH
Q 028332 88 VVLYQYEACPFCNKVKA-FLD------YYDIPYKVVEVNPINKKEIK---------WSEYKKVPILMV---DGEQLVDS 147 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~-~L~------~~gi~y~~v~vd~~~~~~l~---------~~p~g~VP~L~~---~g~~l~eS 147 (210)
+..|+..+|++|++... .+. ..+=.|..+.+|....+++. ..+.+.+|.++. +|+.+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 44478899999998753 222 22336888888754433321 346778998875 78888766
No 147
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=88.94 E-value=3.4 Score=28.81 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=36.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQ 143 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~ 143 (210)
-+..|+.++|+.|++..-.+.+. +-.+....+|....+++ +.-+-..+|.++. +|..
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 46667889999999887766542 22355556665554454 3446677998873 6654
No 148
>PHA02278 thioredoxin-like protein
Probab=88.82 E-value=2.9 Score=30.56 Aligned_cols=58 Identities=17% Similarity=0.455 Sum_probs=36.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc------CCCeEEEEeCCCC--hhHH-hhCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPIN--KKEI-KWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~------gi~y~~v~vd~~~--~~~l-~~~p~g~VP~L~~--~g~~l 144 (210)
-+.-|+.++|+.|+...=.+++. ++++..+++|... .+++ +...-..+|++.. ||+.+
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 45567899999999777555432 2345555555321 2343 3556678898864 88755
No 149
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=88.54 E-value=2 Score=30.60 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=31.7
Q ss_pred CcEEEEEeCCChhHHHHHHHH-------Hh-cCCCeEEEEeCCCC----hhHH-hhCCCCcccEEEE
Q 028332 86 KEVVLYQYEACPFCNKVKAFL-------DY-YDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L-------~~-~gi~y~~v~vd~~~----~~~l-~~~p~g~VP~L~~ 139 (210)
..+..|+.++|++|++..-.+ .. .+ .+..+.+|... ..++ +...-..+|.+..
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 356778999999999876433 11 22 45555555322 2233 3456677997763
No 150
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=88.50 E-value=7.4 Score=29.90 Aligned_cols=73 Identities=12% Similarity=0.282 Sum_probs=40.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc------CCCeEEEEeCCCChhH-HhhCCCCcccEEEE---CCeEee------cHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINKKE-IKWSEYKKVPILMV---DGEQLV------DSSAI 150 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~------gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~---~g~~l~------eS~aI 150 (210)
-+..|+.++|+.|+...-.+.+. ++.|..+.+|.....+ .+...-..+|.++. +|..+. .-..|
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l 102 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVL 102 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHH
Confidence 45567888999999777666432 2344444454322122 34456667997653 565542 22445
Q ss_pred HHHHHhhcC
Q 028332 151 IDQLDQKLT 159 (210)
Q Consensus 151 ~~yL~~~~~ 159 (210)
.+.|++...
T Consensus 103 ~~~l~~l~~ 111 (142)
T cd02950 103 AQNLDALVA 111 (142)
T ss_pred HHHHHHHHc
Confidence 555655543
No 151
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=87.80 E-value=2.5 Score=31.29 Aligned_cols=19 Identities=32% Similarity=0.866 Sum_probs=15.3
Q ss_pred cEEEEEeCCChhHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAF 105 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~ 105 (210)
.+..|+.++||+|++..-.
T Consensus 17 vlv~f~a~wC~~C~~~~~~ 35 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRD 35 (125)
T ss_pred EEEEEeCCCCHHHHHHHHH
Confidence 5677899999999987643
No 152
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=2.5 Score=39.53 Aligned_cols=90 Identities=20% Similarity=0.349 Sum_probs=58.0
Q ss_pred ccccCCCCCCCCCCc--EEEEEeCCChhHH-------HHHHHHHhcCCCeEEEEeCCCChhHHh-hCCCCcccEEEE--C
Q 028332 73 VYAKEPLPTDLVPKE--VVLYQYEACPFCN-------KVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--D 140 (210)
Q Consensus 73 ~~~~~~~~~~~~~~~--v~Ly~~~~cp~c~-------kv~~~L~~~gi~y~~v~vd~~~~~~l~-~~p~g~VP~L~~--~ 140 (210)
.+.++.-...+..+. ++-|+-|||++|. ++-..|.+.|=+.....||-....++. ...-...|.|.+ |
T Consensus 29 ~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 29 VLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred EEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEec
Confidence 444444444444444 4568999999998 556667777667777777633323332 445566777754 6
Q ss_pred CeE------eecHHHHHHHHHhhcCCCC
Q 028332 141 GEQ------LVDSSAIIDQLDQKLTPKR 162 (210)
Q Consensus 141 g~~------l~eS~aI~~yL~~~~~~~~ 162 (210)
|.. .-+...|+.||..+.++..
T Consensus 109 G~~~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 109 GRSAQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred CCcceeccCcccHHHHHHHHHhccCCCc
Confidence 654 3567899999999887653
No 153
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=87.23 E-value=3 Score=30.00 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=34.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc------CC----CeEEEEeCCCChhHH-hhCCCCcccEEEE--CCe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY------DI----PYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~------gi----~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~ 142 (210)
-+..|+.++|++|+...-.+.+. +. .+....+|-...+++ +...-..+|.|.. +|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 46778899999999877666421 01 234444443333443 3556778898864 564
No 154
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=86.46 E-value=18 Score=30.28 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=47.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCeEEEEeCCCChhHH-hhCCCCcccEEE--ECCeEe------ecHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILM--VDGEQL------VDSSAIIDQ 153 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~--~~g~~l------~eS~aI~~y 153 (210)
-+..|+-++|+.|+...-.+++. +-......+|....+++ +...-..+|.+. .+|..+ .....|.+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~f 134 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAF 134 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHH
Confidence 46778899999999776665432 21244445554444443 345667889776 377654 235678899
Q ss_pred HHhhcCCC
Q 028332 154 LDQKLTPK 161 (210)
Q Consensus 154 L~~~~~~~ 161 (210)
+.+.+...
T Consensus 135 i~~~~~~~ 142 (224)
T PTZ00443 135 ALGDFKKA 142 (224)
T ss_pred HHHHHHhh
Confidence 98887543
No 155
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=85.67 E-value=5 Score=31.36 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=51.8
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHh--hC---CCCcccEEEECCeEeec---HHHHHHHHH
Q 028332 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK--WS---EYKKVPILMVDGEQLVD---SSAIIDQLD 155 (210)
Q Consensus 84 ~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~--~~---p~g~VP~L~~~g~~l~e---S~aI~~yL~ 155 (210)
....+.+|..|.|++|..=-..|+.+|+..+.+..+.. ..++ +. ..+.-=+.++||..|-+ -.+|.+.|+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~--~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF--LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH--HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 34579999999999999999999999988777766532 2222 11 23334456778877644 478999999
Q ss_pred hhc
Q 028332 156 QKL 158 (210)
Q Consensus 156 ~~~ 158 (210)
+..
T Consensus 102 ~~p 104 (149)
T COG3019 102 EKP 104 (149)
T ss_pred CCC
Confidence 875
No 156
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=85.07 E-value=4.8 Score=28.44 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=34.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC----CeEEEEeCCCChhHH-hhCCCCcccEEEE--CCe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi----~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~ 142 (210)
-+..|+.++|+.|+...-.+.+..- .+....+|-...+++ +...-..+|.+.. +|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 4667889999999977666643311 244445554343443 3445678898754 554
No 157
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.19 E-value=1.5 Score=33.10 Aligned_cols=68 Identities=19% Similarity=0.366 Sum_probs=45.9
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 84 ~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
+.+.+.|++.|.|+-|.-+.-+|.+..=.|+...||...- .+-.|+|=+|..|+.. .==..|.+||..
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf----FsK~g~v~~lg~d~~y-~lInn~~~~lgn 68 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF----FSKDGQVKVLGMDKGY-TLINNFFKHLGN 68 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee----eccCCceEEEecccce-ehHHHHHHhhcc
Confidence 3568999999999999999999999988999988874321 2345555555543321 111334555544
No 158
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=83.93 E-value=2.3 Score=32.25 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=29.2
Q ss_pred eCCChhHHHHHHH----HHhcCCCeEEEEeCCCChhHH-------hhCC---CCcccEEEE--CCeEeecHHHH
Q 028332 93 YEACPFCNKVKAF----LDYYDIPYKVVEVNPINKKEI-------KWSE---YKKVPILMV--DGEQLVDSSAI 150 (210)
Q Consensus 93 ~~~cp~c~kv~~~----L~~~gi~y~~v~vd~~~~~~l-------~~~p---~g~VP~L~~--~g~~l~eS~aI 150 (210)
..|||.|..+.-. +....-....+.+....++++ +.+| ...||.|+- ++..|.|....
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~ 108 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEECL 108 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhhc
Confidence 4679999987744 444333455554443344443 3333 356999984 55667666543
No 159
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=83.92 E-value=10 Score=29.44 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhH---HhhCCCCcc-c--E-EEECCeEeecHHHHHHHHH
Q 028332 83 LVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE---IKWSEYKKV-P--I-LMVDGEQLVDSSAIIDQLD 155 (210)
Q Consensus 83 ~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~---l~~~p~g~V-P--~-L~~~g~~l~eS~aI~~yL~ 155 (210)
.++.++++++.-.||+|....-+|..++-+-..+..+....+. ++..+...- + + ++.+|..+.+|.|+++-+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~ 84 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILR 84 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHH
Confidence 3445677888888999998888888876665554444322222 333332211 2 2 2348999999999999887
Q ss_pred hhc
Q 028332 156 QKL 158 (210)
Q Consensus 156 ~~~ 158 (210)
..-
T Consensus 85 ~L~ 87 (137)
T COG3011 85 LLP 87 (137)
T ss_pred HCC
Confidence 653
No 160
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=83.63 E-value=6.8 Score=30.78 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=34.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHH-hhCC------CCcccEEEE--CCeEee
Q 028332 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSE------YKKVPILMV--DGEQLV 145 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l-~~~p------~g~VP~L~~--~g~~l~ 145 (210)
+..|+.++||.|+...-.+++. +-.++...||....+++ +... -+++|.+.. +|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 6778899999999877655432 22345555554443442 1112 245898764 887664
No 161
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=83.54 E-value=9 Score=27.41 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=33.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCCh-hHH-hhCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINK-KEI-KWSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~-~~l-~~~p~g~VP~L~~--~g~~l 144 (210)
-+..|+.++|+.|++..-.|... ++.|-.+++|.... .++ +...-..+|.+.. ||..+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 45567889999999776666432 34444444432211 133 2445667897664 77654
No 162
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=82.88 E-value=4.2 Score=29.70 Aligned_cols=57 Identities=23% Similarity=0.442 Sum_probs=35.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhHHh-hCCCCcccEEEE--CCeEeec
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD 146 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~l~-~~p~g~VP~L~~--~g~~l~e 146 (210)
-+..|+.++|+.|+.+.-.++.. ++.| ..+|.... ++. ...-..+|.+.. +|..+..
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f--~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKF--VKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEE--EEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 45567889999999877766542 3433 44443332 433 446678998864 8876543
No 163
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=82.64 E-value=3.9 Score=29.02 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=32.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCeEEEEeCCCChhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~----gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~ 139 (210)
-+..|+.++|+.|++..-.+.+. +-.+....+|....+++ +...-..+|.+..
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 46678899999999776555432 21234445554444444 3456678897764
No 164
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=8 Score=33.93 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=55.2
Q ss_pred cEEEEEeCCChhHHHHHHHHH----hcCCCeEEEEeCCCChhHHh-hCCCCcccEEE--ECCeEeecH------HHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLD----YYDIPYKVVEVNPINKKEIK-WSEYKKVPILM--VDGEQLVDS------SAIIDQ 153 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~----~~gi~y~~v~vd~~~~~~l~-~~p~g~VP~L~--~~g~~l~eS------~aI~~y 153 (210)
-+++|+.|+|+.|....-.|+ +.+=.|....||.+..+.+. ..+-..||.++ .||..|-+- ..|-++
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ 125 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQF 125 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHH
Confidence 577889999999997666654 44556888888876666654 67888899775 488776443 588999
Q ss_pred HHhhcCC
Q 028332 154 LDQKLTP 160 (210)
Q Consensus 154 L~~~~~~ 160 (210)
|++..+.
T Consensus 126 ld~~~~~ 132 (304)
T COG3118 126 LDKVLPA 132 (304)
T ss_pred HHHhcCh
Confidence 9987766
No 165
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=81.55 E-value=9.3 Score=26.66 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=32.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHH----hcC--CCeEEEEeCCCC--hhHH-hhCCCCcccEEEE--CCe
Q 028332 86 KEVVLYQYEACPFCNKVKAFLD----YYD--IPYKVVEVNPIN--KKEI-KWSEYKKVPILMV--DGE 142 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~----~~g--i~y~~v~vd~~~--~~~l-~~~p~g~VP~L~~--~g~ 142 (210)
.-+.+|+-++|+.|+...-.+. ..+ -.+....+|... ..++ +..+-..+|.++. +|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 4577888999999997753332 211 223444444322 3333 3445567897764 554
No 166
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.42 E-value=5 Score=33.59 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=50.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHh-hCCCCcccEEEECCeEe----ecHHHHHHHHHh
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQL----VDSSAIIDQLDQ 156 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~-~~p~g~VP~L~~~g~~l----~eS~aI~~yL~~ 156 (210)
-++++|.+..|--|......|+++|+-=.+..++....+... .+.--.||.++.||+.+ .|-..|-.-|.-
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~G 86 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILSG 86 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHcC
Confidence 368999999999999999999999986555555533333333 55667899999999875 344555555543
No 167
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=80.61 E-value=3.7 Score=30.65 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCcEEEEEeCC--ChhHHHHHHHHHhcCCC----eEEEEeCCCChhHHh-hCCCCcccEEEE--CCeEeec
Q 028332 83 LVPKEVVLYQYEA--CPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD 146 (210)
Q Consensus 83 ~~~~~v~Ly~~~~--cp~c~kv~~~L~~~gi~----y~~v~vd~~~~~~l~-~~p~g~VP~L~~--~g~~l~e 146 (210)
.....|..|+-++ ||-|..+.-+|.+.--. .....+|....+++. ...-..+|.|.. ||..+..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3445677788774 99999888777654222 333345544445554 667788998874 8877654
No 168
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=80.53 E-value=7.5 Score=28.07 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=32.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCC-hhHH--hhCCCCcccEEE
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPIN-KKEI--KWSEYKKVPILM 138 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~-~~~l--~~~p~g~VP~L~ 138 (210)
..+..|+.++||.|+...-.+.+. +..+....+|... ...+ +..+-..+|.+.
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 467788999999999776655432 3334444444322 2222 245677899876
No 169
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=80.48 E-value=9.4 Score=28.76 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHH----HhcCCCeEEEEeCCCC-------hhHHhhCC-C-CcccEEEE--CCeEeec
Q 028332 94 EACPFCNKVKAFL----DYYDIPYKVVEVNPIN-------KKEIKWSE-Y-KKVPILMV--DGEQLVD 146 (210)
Q Consensus 94 ~~cp~c~kv~~~L----~~~gi~y~~v~vd~~~-------~~~l~~~p-~-g~VP~L~~--~g~~l~e 146 (210)
+|||.|+.+.-.+ .+..-.+..+.||... ..++.... - ..+|.+.. +|..|.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 7999999766544 3333223444444322 12343222 2 37998874 4444443
No 170
>PTZ00102 disulphide isomerase; Provisional
Probab=80.18 E-value=14 Score=33.57 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=46.8
Q ss_pred CcEEEEEeCCChhHHHHHHHH-------HhcCCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEe-----ecHHHH
Q 028332 86 KEVVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL-----VDSSAI 150 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L-------~~~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l-----~eS~aI 150 (210)
.-+..|+.++|++|++..-.+ ...+-++....+|-....++ +...-..+|.+.. +|..+ .....|
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCHHHH
Confidence 357788999999999765322 22333455555554343343 3445566887753 55432 245679
Q ss_pred HHHHHhhcCCC
Q 028332 151 IDQLDQKLTPK 161 (210)
Q Consensus 151 ~~yL~~~~~~~ 161 (210)
.+||.+..++.
T Consensus 131 ~~~l~~~~~~~ 141 (477)
T PTZ00102 131 VSWIKKLTGPA 141 (477)
T ss_pred HHHHHHhhCCC
Confidence 99999876554
No 171
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.96 E-value=7.6 Score=30.64 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=40.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC----eEEEEeCCCChhHHh-hCCCCcccEEEE--CCeEe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~----y~~v~vd~~~~~~l~-~~p~g~VP~L~~--~g~~l 144 (210)
-++-|+.+||+.|+.+.=.|++.-=+ ++...+|.+...++. ...-.-||+++. ||+.+
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 46669999999999777766655333 455566665655654 567788998864 88766
No 172
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=79.95 E-value=11 Score=25.55 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=35.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh----c--CCCeEEEEeCCCChhHH-hhCCCCcccEEEE
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDY----Y--DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~----~--gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~ 139 (210)
.-+.+|+-++|++|++..-.+.+ . +-.+....+|.....++ +...-..+|.+..
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 46778888999999987777654 2 23455566664443333 3445578998763
No 173
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=79.25 E-value=9.1 Score=26.66 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=33.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cC--CCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY-----YD--IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~-----~g--i~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~ 142 (210)
.+..|+.++|+.|+...-.+.+ .+ -.+....+|....+++ +...-..+|.+.. +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 6777889999999976544422 22 2355555554333333 3445677897763 554
No 174
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=79.17 E-value=2.7 Score=35.76 Aligned_cols=34 Identities=18% Similarity=0.449 Sum_probs=24.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh---cC-CCeEEEEe
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDY---YD-IPYKVVEV 118 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~---~g-i~y~~v~v 118 (210)
+..|.+|..+.||||++.+..+.. .| |.+..+.+
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 346888999999999999877653 23 55555543
No 175
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=78.06 E-value=2.8 Score=30.13 Aligned_cols=22 Identities=32% Similarity=0.627 Sum_probs=15.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHH
Q 028332 86 KEVVLYQYEACPFCNKVKAFLD 107 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~ 107 (210)
..+.+|+.++||+|++....+.
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHH
Confidence 3577788999999998876665
No 176
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=77.73 E-value=11 Score=30.22 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=34.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC---CCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEeec
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYD---IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQLVD 146 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~g---i~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l~e 146 (210)
|..|+.++|+.|+.+.-.|...- -....+.||.... ++ ...+-..+|+|.. +|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 44567799999997765553321 1234444543322 33 3456678998864 8876643
No 177
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=77.23 E-value=10 Score=30.14 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=27.2
Q ss_pred CCCCcEEEE-EeCCChhHH-------HHHHHHHhcCCCeEEEEeCCC
Q 028332 83 LVPKEVVLY-QYEACPFCN-------KVKAFLDYYDIPYKVVEVNPI 121 (210)
Q Consensus 83 ~~~~~v~Ly-~~~~cp~c~-------kv~~~L~~~gi~y~~v~vd~~ 121 (210)
...+-|.|| +..+||.|+ ++...+...+-+||++.|+.+
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 334556665 677899998 455555666778999999643
No 178
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=77.15 E-value=13 Score=26.33 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=31.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-------cCCCeEEEEeCCCChhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY-------YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~-------~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~ 139 (210)
-+..|+.++||.|++..-.+.+ .+..+....+|....+++ +...-..+|.+..
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 4566788999999966544432 243444544554333343 3445567898763
No 179
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=77.12 E-value=3.4 Score=34.71 Aligned_cols=25 Identities=16% Similarity=0.563 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDYY 109 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~~ 109 (210)
+..|.+|..+.||||+|.+-.+.+.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHH
Confidence 3468899999999999998888764
No 180
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=76.84 E-value=9 Score=28.41 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=33.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC----CeEEEEeCCCChhHH--hhCCCCcccEEEE--CCe
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKEI--KWSEYKKVPILMV--DGE 142 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi----~y~~v~vd~~~~~~l--~~~p~g~VP~L~~--~g~ 142 (210)
.+..|+-+||++|+...-.+++..- ......||-....++ +...-..+|.|.. +|.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 4667899999999988777765421 133344453333333 2345567898764 554
No 181
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=76.83 E-value=18 Score=32.52 Aligned_cols=75 Identities=19% Similarity=0.374 Sum_probs=45.9
Q ss_pred cEEEEEeCCChhHHHHHHHHH-------hcCCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeE-e------ecHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLD-------YYDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQ-L------VDSSA 149 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~-------~~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~-l------~eS~a 149 (210)
.+.+|+.++|+.|++..-.+. ..+-.+....+|-....++ +..+-..+|.+.. +|.. + .+...
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 100 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADG 100 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHH
Confidence 477889999999997754332 2232345555554333443 3445566887753 5543 1 35678
Q ss_pred HHHHHHhhcCCC
Q 028332 150 IIDQLDQKLTPK 161 (210)
Q Consensus 150 I~~yL~~~~~~~ 161 (210)
|..++.+..+..
T Consensus 101 l~~~i~~~~~~~ 112 (462)
T TIGR01130 101 IVKYMKKQSGPA 112 (462)
T ss_pred HHHHHHHhcCCC
Confidence 899998876543
No 182
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=76.58 E-value=17 Score=27.39 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=25.7
Q ss_pred cCCCeEEEEeCCCChhHH-hhCCCCcccEEEE--CCeEee-----cHHHHHHHHHh
Q 028332 109 YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQLV-----DSSAIIDQLDQ 156 (210)
Q Consensus 109 ~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~--~g~~l~-----eS~aI~~yL~~ 156 (210)
.++.+--++++ ..+++ +..+-..+|+|.. ||+.+. ....|..||.+
T Consensus 64 ~~v~~~kVD~d--~~~~La~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 64 KGIGFGLVDSK--KDAKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred CCCEEEEEeCC--CCHHHHHHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHH
Confidence 35544444444 44555 3667788998864 887442 22345555554
No 183
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=76.06 E-value=3.4 Score=33.33 Aligned_cols=34 Identities=21% Similarity=0.523 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh--cCCCeEEEEe
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDY--YDIPYKVVEV 118 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~--~gi~y~~v~v 118 (210)
+..+.+|..+.||||++..-.+.. .++.+..+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 456888999999999999999874 3454444444
No 184
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=75.94 E-value=12 Score=26.02 Aligned_cols=54 Identities=7% Similarity=0.136 Sum_probs=31.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-----C-CCeEEEEeCCCChhHHhhCCCCcccEEEE
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYY-----D-IPYKVVEVNPINKKEIKWSEYKKVPILMV 139 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~-----g-i~y~~v~vd~~~~~~l~~~p~g~VP~L~~ 139 (210)
..+.+|+.++|++|+...-.+.+. + ..+....+|....+.........+|.+..
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 356778889999999776655433 2 23444445532222222223378998764
No 185
>PF13728 TraF: F plasmid transfer operon protein
Probab=75.78 E-value=11 Score=31.21 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=36.4
Q ss_pred CcEEEEEeCCChhHHH----HHHHHHhcCCCeEEEEeCCC----------ChhHHhhCCCCcccEEEE
Q 028332 86 KEVVLYQYEACPFCNK----VKAFLDYYDIPYKVVEVNPI----------NKKEIKWSEYKKVPILMV 139 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~k----v~~~L~~~gi~y~~v~vd~~----------~~~~l~~~p~g~VP~L~~ 139 (210)
-.+.+|+-..||+|++ ++.+-.+.|+....+.+|.. +.+-.+.-+-..+|.|+.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 3578888899999984 55566677998888888721 111233334468998874
No 186
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=75.28 E-value=10 Score=26.87 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=31.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCeEEEEeCCCC--hhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPIN--KKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~----gi~y~~v~vd~~~--~~~l-~~~p~g~VP~L~~ 139 (210)
.+..|+.++|+.|+...-.+.+. +-.+....+|... ..++ +...-..+|.+..
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 67788999999999775555432 2123333344322 3333 3456677898764
No 187
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=74.67 E-value=5.6 Score=30.33 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=27.9
Q ss_pred CcEEEEEeCCChhHHH----HHHHHHhc-CCCeEEEEeCCCChhH----HhhCCCCcccEEEE
Q 028332 86 KEVVLYQYEACPFCNK----VKAFLDYY-DIPYKVVEVNPINKKE----IKWSEYKKVPILMV 139 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~k----v~~~L~~~-gi~y~~v~vd~~~~~~----l~~~p~g~VP~L~~ 139 (210)
-.+.++.-+|||.|.. +..+++.. +|++..+..| ...+ +.-++...||+++.
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd--~~~el~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD--ENKELMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH--HHHHHTTTTTT-SS--SSEEEE
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec--CChhHHHHHHhCCCeecCEEEE
Confidence 3688899999999994 44455555 6666665443 2222 12377889999875
No 188
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=74.50 E-value=11 Score=27.44 Aligned_cols=67 Identities=21% Similarity=0.407 Sum_probs=42.1
Q ss_pred EEEeCCChhHHHHHHHHHhcCC--CeEEEEeCCCChhH-H---hhC---CCCcccEEEECCe-EeecHHHHHHHHHhh
Q 028332 90 LYQYEACPFCNKVKAFLDYYDI--PYKVVEVNPINKKE-I---KWS---EYKKVPILMVDGE-QLVDSSAIIDQLDQK 157 (210)
Q Consensus 90 Ly~~~~cp~c~kv~~~L~~~gi--~y~~v~vd~~~~~~-l---~~~---p~g~VP~L~~~g~-~l~eS~aI~~yL~~~ 157 (210)
||+...||+|......+...+. .++.+++......+ + .++ ....+-+ ..+|+ ...++.++..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4667789999999988888765 45566552111111 1 122 2333333 45776 999999999876654
No 189
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=73.82 E-value=11 Score=30.66 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=22.4
Q ss_pred EEEEEeCCChhHHHH----HHHHHhcCCCeEEEEeC
Q 028332 88 VVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv----~~~L~~~gi~y~~v~vd 119 (210)
+..|...+||+|++. +.+.++.|+.+..+.+|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 778889999999976 44445557655555554
No 190
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=72.75 E-value=21 Score=25.50 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=31.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCC-ChhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPI-NKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~-~~~~l-~~~p~g~VP~L~~ 139 (210)
-+..|+.++|++|+...-.+++. ++.+ ..+|.. ..+++ +...-..+|.+..
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~--~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRH--LAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCce--EEEECCCCCHHHHHhcCCeecCEEEE
Confidence 46678899999999877666433 4433 344433 23333 3445677897753
No 191
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=71.89 E-value=2.7 Score=31.99 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=14.9
Q ss_pred CCCcccEEEE--CCeEeecHHHHHHHHHhhcCC
Q 028332 130 EYKKVPILMV--DGEQLVDSSAIIDQLDQKLTP 160 (210)
Q Consensus 130 p~g~VP~L~~--~g~~l~eS~aI~~yL~~~~~~ 160 (210)
....-|.|.+ +|..++|..||++||..-|..
T Consensus 32 ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 32 EDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred CccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 3334577865 788999999999999987654
No 192
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=69.85 E-value=24 Score=24.47 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=30.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCeEEEEeCCCChhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~----~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~ 139 (210)
-+.+|+.++|+.|+...-.+.+ ..-.+....+|....+++ +.-.-..+|.+..
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 4667788999999987655533 111244444454344443 3334467997753
No 193
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=69.83 E-value=15 Score=25.55 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=33.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cC--CCeEEEEeCCCC-hhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY----YD--IPYKVVEVNPIN-KKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~----~g--i~y~~v~vd~~~-~~~l-~~~p~g~VP~L~~ 139 (210)
.+..|+.++|+.|+...-.+.. .+ -.+....+|... .+.+ +..+-..+|.+..
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5778899999999976555533 22 236666666444 3443 3445677998764
No 194
>PLN02309 5'-adenylylsulfate reductase
Probab=68.44 E-value=32 Score=32.02 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=32.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCC-ChhHH-h-hCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPI-NKKEI-K-WSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~-~~~~l-~-~~p~g~VP~L~~ 139 (210)
.+..|+-++|++|+...-.+.+. +-.+.+..+|.. ...++ + ...-..+|.|..
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 57789999999999776655433 333444555533 22232 2 346678998864
No 195
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=68.13 E-value=9.1 Score=26.49 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=31.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-----CC-CeEEEEeCCCChhHH-hhCCCCcccEEE
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYY-----DI-PYKVVEVNPINKKEI-KWSEYKKVPILM 138 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~-----gi-~y~~v~vd~~~~~~l-~~~p~g~VP~L~ 138 (210)
-.+.+|+.++|+.|++..-.+... +- .+....+|.....++ +..+...+|.+.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIK 74 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEE
Confidence 357889999999999865555332 11 234444443333343 345567799875
No 196
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=67.54 E-value=28 Score=32.42 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCCeEEEEeCCCChhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-------DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-------gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~ 139 (210)
.+..|+-++|++|+...-.+++. ++.+-.+++|....... +...-..+|.|..
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 46668999999999776555332 23344444443222222 2345568897764
No 197
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.53 E-value=26 Score=25.71 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=35.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhH-HhhCCCCcccEEEE--CCeEee
Q 028332 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQLV 145 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~~--~g~~l~ 145 (210)
|.-|+-.|||.|+.+.=.++++ ++-|-.+++|. ..+ .+...-..+|++.. +|+.+.
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEE
Confidence 3447889999999877666654 34444455554 223 33456677898864 775543
No 198
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=66.16 E-value=7.5 Score=26.26 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=22.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCCeEEEEe
Q 028332 88 VVLYQYEACPFCNKVKAFLDYY------DIPYKVVEV 118 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~------gi~y~~v~v 118 (210)
|.+|..+.||+|....-.+... ++.++.+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 4678899999999888888764 344555544
No 199
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=63.18 E-value=17 Score=27.88 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=28.9
Q ss_pred cEEEEEeCCChhHHHHHHHHH-------hcCCCeEEEEeCCCChh-HHhhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLD-------YYDIPYKVVEVNPINKK-EIKWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~-------~~gi~y~~v~vd~~~~~-~l~~~p~g~VP~L~~ 139 (210)
-+..++..+||+|++.....- ..+=.|..+.++....+ ....++ ..+|.++.
T Consensus 26 vmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivF 85 (130)
T cd02960 26 LMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMF 85 (130)
T ss_pred EEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEE
Confidence 455578899999997766532 12224665555432211 122233 45898764
No 200
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=60.96 E-value=15 Score=28.86 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=26.0
Q ss_pred cEEEEEeCCChhHHHHHH----HHHhc-CCCeEEEEeCCC
Q 028332 87 EVVLYQYEACPFCNKVKA----FLDYY-DIPYKVVEVNPI 121 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~----~L~~~-gi~y~~v~vd~~ 121 (210)
+|++|....||||..... ++++. ++.++.+.+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 478999999999995544 44455 888888887643
No 201
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=60.39 E-value=48 Score=25.96 Aligned_cols=21 Identities=19% Similarity=0.418 Sum_probs=14.3
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLD 107 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~ 107 (210)
.+..|+..+||.|++..-.+.
T Consensus 66 vll~F~a~wC~~C~~~~p~l~ 86 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLN 86 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHH
Confidence 344567888999997644443
No 202
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=59.22 E-value=16 Score=29.74 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=34.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC---CeEEEEeCCCChhHHhhCCCCcccEEEE--CCeEeec
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQLVD 146 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi---~y~~v~vd~~~~~~l~~~p~g~VP~L~~--~g~~l~e 146 (210)
|..|+.++|+.|+.+.-.|...-- ....+.++... .....+-..+|+|.. ||..+..
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--~~~~~~i~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--CIPNYPDKNLPTILVYRNGDIVKQ 167 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--hHhhCCCCCCCEEEEEECCEEEEE
Confidence 445677999999987666654321 23344444211 123457788998875 8875543
No 203
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=57.31 E-value=13 Score=28.74 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=24.1
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhc------CCCeEEEEe
Q 028332 84 VPKEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEV 118 (210)
Q Consensus 84 ~~~~v~Ly~~~~cp~c~kv~~~L~~~------gi~y~~v~v 118 (210)
.+..|..|....||+|.+..-.+... ++.|+.+.+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 34568888999999999887776432 445555444
No 204
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=56.39 E-value=15 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=19.0
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDY 108 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~ 108 (210)
+-.|+.|..+.||+|++..-.+..
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346888899999999988766654
No 205
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=55.77 E-value=50 Score=24.20 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=13.4
Q ss_pred EEEEEeCCChhHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFL 106 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L 106 (210)
+..|...+||.|++..-.|
T Consensus 22 ll~Fwa~wC~~C~~~~p~l 40 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKL 40 (131)
T ss_pred EEEEECCCChHHHHHhHHH
Confidence 4445678899999755554
No 206
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=55.29 E-value=46 Score=28.42 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=27.4
Q ss_pred CcEEEEEeCCChhHH----HHHHHHHhcCCCeEEEEeCC
Q 028332 86 KEVVLYQYEACPFCN----KVKAFLDYYDIPYKVVEVNP 120 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~----kv~~~L~~~gi~y~~v~vd~ 120 (210)
-.+.+|+-..||+|+ .++.+-+..|++...+.+|.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 357777888899999 46666778899888888863
No 207
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=55.23 E-value=47 Score=28.53 Aligned_cols=52 Identities=21% Similarity=0.442 Sum_probs=30.9
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCCeEEEEeCCCC---------hhH-HhhCCCCcccEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFL----DYYDIPYKVVEVNPIN---------KKE-IKWSEYKKVPILM 138 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L----~~~gi~y~~v~vd~~~---------~~~-l~~~p~g~VP~L~ 138 (210)
.+..|+-.+||+|++..-.| ++.|+.+..+.+|... ... .+.-+-..+|.++
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~ 234 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF 234 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence 45567788899999665544 4456655556555321 111 2233557799776
No 208
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.23 E-value=16 Score=27.81 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=36.0
Q ss_pred eCCChhHHHHH----HHHHhcCCCeEEEEeCCCChhHHh--hCCC-------CcccEEE-EC--CeEeecHHHHHHHHHh
Q 028332 93 YEACPFCNKVK----AFLDYYDIPYKVVEVNPINKKEIK--WSEY-------KKVPILM-VD--GEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 93 ~~~cp~c~kv~----~~L~~~gi~y~~v~vd~~~~~~l~--~~p~-------g~VP~L~-~~--g~~l~eS~aI~~yL~~ 156 (210)
-+|||.|.++. -+|++..-+...+.++..+++.|+ -|++ .-||.|. ++ ++.+.|...-...|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 46799999765 455556666666666554544433 2333 3477775 33 3445555554455544
No 209
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.43 E-value=27 Score=29.40 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=15.3
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLD 107 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~ 107 (210)
.|.+|+-..||+|..-+--|+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ 27 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLE 27 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHH
Confidence 577888999999995444443
No 210
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=54.35 E-value=38 Score=25.41 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=34.5
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCCC----eEEEEeCCCChhHHh-hCCCCcccEEE--ECCeEe
Q 028332 86 KEVVL-YQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILM--VDGEQL 144 (210)
Q Consensus 86 ~~v~L-y~~~~cp~c~kv~~~L~~~gi~----y~~v~vd~~~~~~l~-~~p~g~VP~L~--~~g~~l 144 (210)
+.+.| |+..+||.|+.+--.|.+.--. .....||...-+++. ...-.-+|..+ -+|.+|
T Consensus 15 klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 15 KVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred CEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 34444 7889999999887777665322 223344544545543 44445578665 366554
No 211
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=53.93 E-value=21 Score=26.59 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=27.9
Q ss_pred CcEEEEE--eCCChhHHHHHHHHHhc-----CCCeEEEEeCCCChhH---HhhCCCCcccEEEECC
Q 028332 86 KEVVLYQ--YEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE---IKWSEYKKVPILMVDG 141 (210)
Q Consensus 86 ~~v~Ly~--~~~cp~c~kv~~~L~~~-----gi~y~~v~vd~~~~~~---l~~~p~g~VP~L~~~g 141 (210)
+.+.|+. ..+||.|++-.-.|... +-.++++-|+....+. +.....-..|++.|.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~ 89 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPD 89 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCc
Confidence 3444443 46899999644443322 1234455554333222 2222233578877644
No 212
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=53.88 E-value=15 Score=27.90 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHH
Q 028332 85 PKEVVLYQYEACPFCNKVKAFL 106 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L 106 (210)
+..|++|.-..||+|.+....+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHH
Confidence 4479999999999999876655
No 213
>PTZ00062 glutaredoxin; Provisional
Probab=52.72 E-value=1.1e+02 Score=25.31 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=42.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC---eEEEEeCCCChhHHhhCCCCcccEEEE--CCeEe-----ecHHHHHHHHHh
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL-----VDSSAIIDQLDQ 156 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~---y~~v~vd~~~~~~l~~~p~g~VP~L~~--~g~~l-----~eS~aI~~yL~~ 156 (210)
.+..|.-+|||-|+.+.-+|.+.--. +....||.. ..-..||.++. ||+.| ++...+..++..
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~ 92 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRG 92 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------cCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHH
Confidence 45556689999999888887665322 344444422 45567886653 66554 245667777776
Q ss_pred hcCC
Q 028332 157 KLTP 160 (210)
Q Consensus 157 ~~~~ 160 (210)
.++.
T Consensus 93 ~~~~ 96 (204)
T PTZ00062 93 WAQK 96 (204)
T ss_pred HcCC
Confidence 6553
No 214
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=51.42 E-value=95 Score=29.66 Aligned_cols=51 Identities=8% Similarity=0.208 Sum_probs=28.3
Q ss_pred EEEEEeCCChhHHHHHHHH-------HhcCCCeEEEEeCCCC--h--hH-HhhCCCCcccEEEE
Q 028332 88 VVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPIN--K--KE-IKWSEYKKVPILMV 139 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L-------~~~gi~y~~v~vd~~~--~--~~-l~~~p~g~VP~L~~ 139 (210)
+.-|+-++|+.|++.+... ++.+ ++..+.+|..+ . .+ .+...-..+|.+..
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~ 540 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILF 540 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEE
Confidence 4457889999999764431 1222 34555454322 1 12 23445666897763
No 215
>PTZ00102 disulphide isomerase; Provisional
Probab=50.22 E-value=66 Score=29.21 Aligned_cols=73 Identities=11% Similarity=0.218 Sum_probs=39.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC------eEEEEeCCCChhH-HhhCCCCcccEEEE--CCeEe-------ecHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIP------YKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL-------VDSSAI 150 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~------y~~v~vd~~~~~~-l~~~p~g~VP~L~~--~g~~l-------~eS~aI 150 (210)
.+..|+.++|+.|+...-.+.+..-. +....+|....+. .+.-.-..+|.+.. +|..+ .....|
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l 457 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGF 457 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHH
Confidence 45667889999999887766543211 2233344222111 22223456787753 33211 133467
Q ss_pred HHHHHhhcC
Q 028332 151 IDQLDQKLT 159 (210)
Q Consensus 151 ~~yL~~~~~ 159 (210)
.++|.+...
T Consensus 458 ~~~i~~~~~ 466 (477)
T PTZ00102 458 KEFVNKHAT 466 (477)
T ss_pred HHHHHHcCC
Confidence 777777654
No 216
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=48.72 E-value=63 Score=23.51 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=29.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC-------eEEEEeC--CCChhHH-hhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIP-------YKVVEVN--PINKKEI-KWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~-------y~~v~vd--~~~~~~l-~~~p~g~VP~L~~ 139 (210)
-+..|+.++|+.|+...-.+....-. +....+| ....+++ +...-..+|.+..
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 46668889999999766555432111 2333333 2222232 3455677898764
No 217
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=48.20 E-value=36 Score=27.20 Aligned_cols=59 Identities=19% Similarity=0.420 Sum_probs=33.1
Q ss_pred EEEEEeCCChhHHHHHH-------HHHhcCCCeEEEEeCCCChhHH---------hhCCCCcccEEEE---CCeEeec
Q 028332 88 VVLYQYEACPFCNKVKA-------FLDYYDIPYKVVEVNPINKKEI---------KWSEYKKVPILMV---DGEQLVD 146 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~-------~L~~~gi~y~~v~vd~~~~~~l---------~~~p~g~VP~L~~---~g~~l~e 146 (210)
+.-.++.+|.+|++... +.+..+-.|..|.+|...++++ .+++.|.-|.-+. +|..++.
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 33468999999996553 3334445677788887776652 1458889996654 7877764
No 218
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=48.07 E-value=57 Score=27.96 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=34.7
Q ss_pred cEEEEEeCCChhHHH----HHHHHHhcCCCeEEEEeCCCChh----------HHhhCCCCcccEEEE
Q 028332 87 EVVLYQYEACPFCNK----VKAFLDYYDIPYKVVEVNPINKK----------EIKWSEYKKVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~k----v~~~L~~~gi~y~~v~vd~~~~~----------~l~~~p~g~VP~L~~ 139 (210)
.+.+|+-..||+|++ ++.+-...|++...+.+|...-+ ..+.-+-..+|.|+.
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 467777888999995 45556778999888888732111 122223456898763
No 219
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=47.62 E-value=51 Score=25.63 Aligned_cols=55 Identities=9% Similarity=0.180 Sum_probs=31.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----eEEEEeCCCChhHHh--hCCCCcccEE-EE-CCe
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK--WSEYKKVPIL-MV-DGE 142 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~----y~~v~vd~~~~~~l~--~~p~g~VP~L-~~-~g~ 142 (210)
+.-|+.+|||.|+...-.|++.--. .....||.+..+++. .+=.+-.|++ +. +|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 3447889999999887777654321 333445544544532 2223345666 33 665
No 220
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=47.04 E-value=1.3e+02 Score=22.99 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=12.7
Q ss_pred cEEEEEeCCChhHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKA 104 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~ 104 (210)
.+..|..++||.|+...-
T Consensus 64 ~~l~f~a~~C~~C~~~~~ 81 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMP 81 (173)
T ss_pred EEEEEECCcCHHHHHHHH
Confidence 345567889999997433
No 221
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.41 E-value=23 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeC
Q 028332 97 PFCNKVKAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 97 p~c~kv~~~L~~~gi~y~~v~vd 119 (210)
+|++|+...|+..|++|+..+-.
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCC
Confidence 89999999999999999998643
No 222
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=46.16 E-value=32 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=21.6
Q ss_pred EEEEEeCCChhHHHHHHHHH----hcCCCeEEEEe
Q 028332 88 VVLYQYEACPFCNKVKAFLD----YYDIPYKVVEV 118 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~----~~gi~y~~v~v 118 (210)
|.+|....||||.-....|+ +.++.++.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46889999999996554444 44666666555
No 223
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=44.97 E-value=64 Score=25.22 Aligned_cols=35 Identities=17% Similarity=0.619 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHH----hcCCCeEEEEeC
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLD----YYDIPYKVVEVN 119 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~----~~gi~y~~v~vd 119 (210)
...+..|..++||+|++-.=.|. +.|+.+..+.+|
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 33577788999999997655553 346655555555
No 224
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=44.13 E-value=1.1e+02 Score=23.18 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCeEEEEeCCCCh-----hH----HhhCCCCcccEEEECCeEe
Q 028332 102 VKAFLDYYDIPYKVVEVNPINK-----KE----IKWSEYKKVPILMVDGEQL 144 (210)
Q Consensus 102 v~~~L~~~gi~y~~v~vd~~~~-----~~----l~~~p~g~VP~L~~~g~~l 144 (210)
+.-.|+.+|+..+..++..... +. ++..+...+|++.+||+++
T Consensus 32 ~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv 83 (123)
T PF06953_consen 32 DLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIV 83 (123)
T ss_dssp HHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEE
T ss_pred HHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEE
Confidence 3344578898888887742211 11 4466888999999999865
No 225
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=43.36 E-value=45 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=23.2
Q ss_pred cEEEEEeCCChhHHHHHH----HHHhcCCCeEEEEe
Q 028332 87 EVVLYQYEACPFCNKVKA----FLDYYDIPYKVVEV 118 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~----~L~~~gi~y~~v~v 118 (210)
.|.+|+...||||.-... ++...+++.+.+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 478999999999995544 44456777666665
No 226
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=41.65 E-value=84 Score=21.34 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=15.1
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLD 107 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~ 107 (210)
.+..|...+||.|.+..-.+.
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~ 42 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELE 42 (116)
T ss_pred EEEEeecccChhHHHHhHHHH
Confidence 466677889999996554443
No 227
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=40.61 E-value=1.5e+02 Score=21.84 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=13.2
Q ss_pred EEEEEeCCChhHHHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFL 106 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L 106 (210)
+..|..++||.|+...-.|
T Consensus 21 ll~F~atwC~~C~~~~p~l 39 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKL 39 (132)
T ss_pred EEEEECCCCchHHHHHHHH
Confidence 3345678899999765444
No 228
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=39.15 E-value=56 Score=19.18 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=23.4
Q ss_pred hCCCCcccEEEECCeEeecHHHHHHHHHh
Q 028332 128 WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 128 ~~p~g~VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
+--.|.+|....++..++.-.+|.+|+++
T Consensus 21 ~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 21 LIHEGELPAYRVGRHYRIPREDVDEYLEQ 49 (49)
T ss_pred HHHcCCCCeEEeCCeEEEeHHHHHHHHhC
Confidence 44567889877788899999999999863
No 229
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.50 E-value=3.1e+02 Score=24.98 Aligned_cols=96 Identities=8% Similarity=-0.035 Sum_probs=55.8
Q ss_pred CCCcEEEEE-eCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCC
Q 028332 84 VPKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (210)
Q Consensus 84 ~~~~v~Ly~-~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 162 (210)
.++.|-|.+ +......+.++-+|++.||+...+...-..-++++..+...+=++. ... .-..+++||+++|+.+.
T Consensus 171 ~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~-~~~---~~~~~a~~Le~~fGiP~ 246 (421)
T cd01976 171 TPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIH-CYR---SMNYIARMMEEKYGIPW 246 (421)
T ss_pred CCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEE-CcH---HHHHHHHHHHHHhCCcE
Confidence 356777775 2233456789999999999987554333345556654544333222 110 11358999999998874
Q ss_pred C-CCCCCChHHHHHHHHHHHhhh
Q 028332 163 K-ADSPSGDDEEKKWRGQFQLHR 184 (210)
Q Consensus 163 ~-~~~~~~~~~~~~w~~~~~~~l 184 (210)
. ..+.. -.....|+.-+.+.+
T Consensus 247 ~~~~p~G-i~~t~~~l~~ia~~~ 268 (421)
T cd01976 247 MEYNFFG-PTKIAESLRKIAAYF 268 (421)
T ss_pred EecccCC-HHHHHHHHHHHHHHh
Confidence 2 22333 555666665554443
No 230
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=37.51 E-value=46 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=15.0
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLD 107 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~ 107 (210)
.+..|+.++||.|+...-.|.
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~ 43 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVN 43 (123)
T ss_pred EEEEEECCcChhhhhhChHHH
Confidence 566677888999997654443
No 231
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=37.24 E-value=42 Score=21.90 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=20.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCeEEEEeC
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd 119 (210)
++||....-.-+..++-.|+..||++...+-.
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 46777777677889999999999999887554
No 232
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.79 E-value=53 Score=25.69 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=20.9
Q ss_pred cEEEEEeCCChhHHHHHHHH----Hhc--CCCeEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFL----DYY--DIPYKVVE 117 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L----~~~--gi~y~~v~ 117 (210)
.|.+|..+.||+|....-.| ++. ++.++.+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 37889999999999554444 343 56655554
No 233
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=36.55 E-value=1.9e+02 Score=25.88 Aligned_cols=71 Identities=10% Similarity=0.195 Sum_probs=37.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CC--CeEEEEeCCCChhHHhhCCCCcccEEEE--CCeE-----e---ecHHH
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYY-----DI--PYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQ-----L---VDSSA 149 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~-----gi--~y~~v~vd~~~~~~l~~~p~g~VP~L~~--~g~~-----l---~eS~a 149 (210)
.+..|+.++|+.|....-.++.. ++ .+....+|....+-.. ..-..+|.|.. +|.. . .....
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~ 445 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLED 445 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC-CCccccCEEEEEeCCCCcCceEecCcCCHHH
Confidence 46668889999999776555432 22 2444444432211111 23456787764 3321 1 23456
Q ss_pred HHHHHHhhc
Q 028332 150 IIDQLDQKL 158 (210)
Q Consensus 150 I~~yL~~~~ 158 (210)
|.++|.+..
T Consensus 446 l~~~l~~~~ 454 (462)
T TIGR01130 446 FSKFIAKHA 454 (462)
T ss_pred HHHHHHhcC
Confidence 667776653
No 234
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.38 E-value=2.5e+02 Score=25.07 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=45.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc------CCCeEEEEeCCCChhHHh-hCCCCcccEEEE--CC-e------EeecHH
Q 028332 85 PKEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DG-E------QLVDSS 148 (210)
Q Consensus 85 ~~~v~Ly~~~~cp~c~kv~~~L~~~------gi~y~~v~vd~~~~~~l~-~~p~g~VP~L~~--~g-~------~l~eS~ 148 (210)
.+.+.-++.|+|++|++..-..... +..+++..+|-.....+. ....+..|.++. +| . -.-++.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~ 242 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSD 242 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHH
Confidence 3457777889999999773222221 344555555532222222 445555565543 22 2 246778
Q ss_pred HHHHHHHhhcCCC
Q 028332 149 AIIDQLDQKLTPK 161 (210)
Q Consensus 149 aI~~yL~~~~~~~ 161 (210)
.|++|+....+..
T Consensus 243 ~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 243 SIVSFVEKKERRN 255 (383)
T ss_pred HHHHHHHhhcCCC
Confidence 9999999987763
No 235
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=35.87 E-value=43 Score=24.75 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.3
Q ss_pred ccEEE-ECCeEeecHHHHHHHHHhhc
Q 028332 134 VPILM-VDGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 134 VP~L~-~~g~~l~eS~aI~~yL~~~~ 158 (210)
+|.+. .||..+.+|..|+++....+
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H 27 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRH 27 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcch
Confidence 46555 59999999999999988764
No 236
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.42 E-value=46 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEeCCChhHHHHHHHH----Hhc----CCCeEEEEe
Q 028332 88 VVLYQYEACPFCNKVKAFL----DYY----DIPYKVVEV 118 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L----~~~----gi~y~~v~v 118 (210)
|.+|....||||.-....| ++. ++.++.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 4689999999999555444 344 455555554
No 237
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=32.39 E-value=43 Score=22.68 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=31.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-------cCCCeEEEEeCCCChhH-HhhCCCCcccEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY-------YDIPYKVVEVNPINKKE-IKWSEYKKVPILM 138 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~-------~gi~y~~v~vd~~~~~~-l~~~p~g~VP~L~ 138 (210)
-+..++..+|+.|++..-.+.. .+-.|..+.+|...... .+....+ +|.+.
T Consensus 20 vlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~-~P~~~ 78 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQG-YPTFF 78 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCS-SSEEE
T ss_pred EEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCcc-CCEEE
Confidence 4667789999999977665521 23457777777544332 3222233 88775
No 238
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=31.59 E-value=98 Score=22.55 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=18.1
Q ss_pred EEEEEeCCChhHHHHHHHHHh-----cCCCeEEEEeC
Q 028332 88 VVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVN 119 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~-----~gi~y~~v~vd 119 (210)
+..|...+||.|.+-.-.|.. .+..++++-++
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~ 63 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVH 63 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEec
Confidence 344566789999965444432 23345555553
No 239
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=31.48 E-value=1.1e+02 Score=24.20 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=18.2
Q ss_pred EEEEEeCCChhHHHHHHHHH---hcCCCeEEEEeC
Q 028332 88 VVLYQYEACPFCNKVKAFLD---YYDIPYKVVEVN 119 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~---~~gi~y~~v~vd 119 (210)
+..|...+||+|++-.-.|. ++|+ +++-|+
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~--~vi~v~ 104 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGI--RVVGMN 104 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCC--EEEEEE
Confidence 44467788999997554443 3454 444454
No 240
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=30.89 E-value=89 Score=22.23 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=28.9
Q ss_pred CCCCcEEEEEeC--CChhHHHHHHHHHh-----cCCCeEEEEeCCCChhH---HhhCCCCcccEEEECC
Q 028332 83 LVPKEVVLYQYE--ACPFCNKVKAFLDY-----YDIPYKVVEVNPINKKE---IKWSEYKKVPILMVDG 141 (210)
Q Consensus 83 ~~~~~v~Ly~~~--~cp~c~kv~~~L~~-----~gi~y~~v~vd~~~~~~---l~~~p~g~VP~L~~~g 141 (210)
...+.+.|+.+. +||.|.+..-.|.+ ..-.++++.|.....++ +...-.-..|++.|.+
T Consensus 23 l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~ 91 (124)
T PF00578_consen 23 LKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPD 91 (124)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETT
T ss_pred HCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcc
Confidence 333455554444 59999865544432 22234555554333333 2111225667777644
No 241
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=30.81 E-value=1.8e+02 Score=19.93 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=33.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CCeEEEEeCCCChhH-HhhCCCC--cccEEEE
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYD----IPYKVVEVNPINKKE-IKWSEYK--KVPILMV 139 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~g----i~y~~v~vd~~~~~~-l~~~p~g--~VP~L~~ 139 (210)
.+.+|..++|+.|.+.+-.+.+.. =.+....+|....++ .+..+.. .+|.|..
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence 566677788999998888776532 234555566544333 2333333 8998874
No 242
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=30.72 E-value=1.3e+02 Score=23.27 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=21.7
Q ss_pred EEEEEeCCChhHHHHHHHHHh-------c-----CCCeEEEEeCCC
Q 028332 88 VVLYQYEACPFCNKVKAFLDY-------Y-----DIPYKVVEVNPI 121 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~-------~-----gi~y~~v~vd~~ 121 (210)
+..|...+||.|++..-.|.. + +-.++++-|+..
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D 74 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD 74 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC
Confidence 334567789999987766643 1 224677766543
No 243
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=30.49 E-value=96 Score=23.04 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCCCcEEEEE-eC-CChhHHHHHHHHH-------hcCCCeEEEEeC
Q 028332 83 LVPKEVVLYQ-YE-ACPFCNKVKAFLD-------YYDIPYKVVEVN 119 (210)
Q Consensus 83 ~~~~~v~Ly~-~~-~cp~c~kv~~~L~-------~~gi~y~~v~vd 119 (210)
...+.+.|+. .. +||.|++-.-.|. .+|+.+..+..+
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~ 71 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD 71 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc
Confidence 3344544444 44 6999996554443 344555555544
No 244
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=28.27 E-value=4.9e+02 Score=24.15 Aligned_cols=95 Identities=8% Similarity=-0.021 Sum_probs=56.1
Q ss_pred CCcEEEEE-eCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhhcCCCCC
Q 028332 85 PKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (210)
Q Consensus 85 ~~~v~Ly~-~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~~~~ 163 (210)
++.|-|.+ +......+.++-+|++.||++....-....-++++..+..++=++. ... ....+++||+++|+.+-.
T Consensus 207 ~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~lniv~-~~~---~~~~~A~~Le~~fGiP~~ 282 (466)
T TIGR01282 207 PYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLNLIH-CYR---SMNYISRHMEEKYGIPWM 282 (466)
T ss_pred CCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEE-ChH---HHHHHHHHHHHHhCCceE
Confidence 46677765 3444567889999999999987544332344456655554433322 110 124589999999987742
Q ss_pred -CCCCCChHHHHHHHHHHHhhh
Q 028332 164 -ADSPSGDDEEKKWRGQFQLHR 184 (210)
Q Consensus 164 -~~~~~~~~~~~~w~~~~~~~l 184 (210)
..+.. -.....|++-+.+.+
T Consensus 283 ~~~~~G-i~~T~~~Lr~ia~~~ 303 (466)
T TIGR01282 283 EYNFFG-PTKIAESLRKIAEFF 303 (466)
T ss_pred eCCCCC-HHHHHHHHHHHHHHH
Confidence 22333 555556665555444
No 245
>PF12728 HTH_17: Helix-turn-helix domain
Probab=28.09 E-value=1.2e+02 Score=18.43 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=25.1
Q ss_pred hCCCCcccEEEECCeEeecHHHHHHHHHhh
Q 028332 128 WSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (210)
Q Consensus 128 ~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~ 157 (210)
+--.|.+|.+..++...+.-.+|.+|++++
T Consensus 21 ~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 21 WIRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 456778888888888999999999999864
No 246
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=27.74 E-value=63 Score=22.83 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=14.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q 028332 87 EVVLYQYEACPFCNKVKAFLDY 108 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~ 108 (210)
.+..|..++||.|++..-.+.+
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHH
Confidence 3445667789999976544433
No 247
>PRK09266 hypothetical protein; Provisional
Probab=27.48 E-value=1.1e+02 Score=25.86 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCeEEEEeCCCC---hhHHh-hC-CCCcccEEEECCeEeecHHHHHHHHHhhcCC
Q 028332 102 VKAFLDYYDIPYKVVEVNPIN---KKEIK-WS-EYKKVPILMVDGEQLVDSSAIIDQLDQKLTP 160 (210)
Q Consensus 102 v~~~L~~~gi~y~~v~vd~~~---~~~l~-~~-p~g~VP~L~~~g~~l~eS~aI~~yL~~~~~~ 160 (210)
+...++..|+++++..+.+.+ .+++- .| -.|-+|+..+||..+.+...|.+.|.+.|..
T Consensus 197 ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 197 LQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 344556779998888876432 22332 34 4689999999998887557888888877643
No 248
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=26.66 E-value=5.2e+02 Score=23.97 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=54.2
Q ss_pred CCCcEEEEEe-CCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeec--HHHHHHHHHhhcCC
Q 028332 84 VPKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVD--SSAIIDQLDQKLTP 160 (210)
Q Consensus 84 ~~~~v~Ly~~-~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~e--S~aI~~yL~~~~~~ 160 (210)
.++.|.|.+. ....-...++-+|++.|+.+..+...-..-++++..+...+=++ ++. ....++||+++|+.
T Consensus 190 ~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv------~~~~~~~~~A~~L~erfGi 263 (475)
T PRK14478 190 TPYDINILGEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANMM------VCSGAMINLARKMEERYGI 263 (475)
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEEE------EcHHHHHHHHHHHHHHhCC
Confidence 3567887752 22345678899999999987754332223444554443332221 212 14579999999987
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhh
Q 028332 161 KRKADSPSGDDEEKKWRGQFQLHR 184 (210)
Q Consensus 161 ~~~~~~~~~~~~~~~w~~~~~~~l 184 (210)
+-.....-.-.....|+.-+.+.+
T Consensus 264 P~~~~~p~G~~~T~~~l~~la~~~ 287 (475)
T PRK14478 264 PFFEGSFYGIEDTSDSLRQIARLL 287 (475)
T ss_pred CEEecCCCcHHHHHHHHHHHHHHH
Confidence 642222212556666666655554
No 249
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.05 E-value=1.5e+02 Score=27.65 Aligned_cols=69 Identities=20% Similarity=0.412 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHhc--CCC-eEEEEeC--CCChhHH-----hhCC--CCcccEEE----E---CCeEeecHHHHHHHH
Q 028332 94 EACPFCNKVKAFLDYY--DIP-YKVVEVN--PINKKEI-----KWSE--YKKVPILM----V---DGEQLVDSSAIIDQL 154 (210)
Q Consensus 94 ~~cp~c~kv~~~L~~~--gi~-y~~v~vd--~~~~~~l-----~~~p--~g~VP~L~----~---~g~~l~eS~aI~~yL 154 (210)
..|||-.|+.++..++ ++| |.++.+- |...++| +.|+ .++-|++. + .|..|+++++-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 3699999999999886 454 7777663 3344442 2443 47889984 3 357899999999999
Q ss_pred HhhcCCCC
Q 028332 155 DQKLTPKR 162 (210)
Q Consensus 155 ~~~~~~~~ 162 (210)
..-|+...
T Consensus 82 ~~yyg~~s 89 (452)
T cd05295 82 ESYYGITS 89 (452)
T ss_pred HHHhCccc
Confidence 99998754
No 250
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.70 E-value=1.5e+02 Score=21.41 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhcCCCeEEEEe
Q 028332 97 PFCNKVKAFLDYYDIPYKVVEV 118 (210)
Q Consensus 97 p~c~kv~~~L~~~gi~y~~v~v 118 (210)
--+.|++.+++++|++++....
T Consensus 15 ~la~km~~~a~~~gi~~~i~a~ 36 (99)
T cd05565 15 LLANALNKGAKERGVPLEAAAG 36 (99)
T ss_pred HHHHHHHHHHHHCCCcEEEEEe
Confidence 3567888999999998887644
No 251
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=24.82 E-value=3.3e+02 Score=21.05 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=38.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHH-hhCCCCcccEEEE---CCeEee
Q 028332 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEI-KWSEYKKVPILMV---DGEQLV 145 (210)
Q Consensus 87 ~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l-~~~p~g~VP~L~~---~g~~l~ 145 (210)
.+.+.+...-.--..++.++..+++.+....+.......+ +..+-..+|.++. +|.++.
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 4777666654455778899999998876655442222233 3556678998874 677664
No 252
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=24.74 E-value=1.2e+02 Score=22.15 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=27.2
Q ss_pred CCcEEEEEe--CCChhHHHHHHHHH-------hcCCCeEEEEeCCCChhH---Hh-hCCCCcccEEEECC
Q 028332 85 PKEVVLYQY--EACPFCNKVKAFLD-------YYDIPYKVVEVNPINKKE---IK-WSEYKKVPILMVDG 141 (210)
Q Consensus 85 ~~~v~Ly~~--~~cp~c~kv~~~L~-------~~gi~y~~v~vd~~~~~~---l~-~~p~g~VP~L~~~g 141 (210)
.+.+.|+.+ .+||.|..-.-.|. ..|+.+-.+.++ .... +. ..+...+|+|.+.+
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--~~~~~~~~~~~~~~~~~~~l~D~~ 89 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--SPFSHKAWAEKEGGLNFPLLSDPD 89 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHhcccCCCceEEECCC
Confidence 344555554 47898886433332 345444444433 3332 22 22245677776533
No 253
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.87 E-value=2e+02 Score=23.13 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=40.8
Q ss_pred EEEEEeCCChhHHHHHHHHH---hcCCCeEEEEeCCCChhH-----H-h-hCCCCc-ccEEEECCeEeecHHHHHHHHHh
Q 028332 88 VVLYQYEACPFCNKVKAFLD---YYDIPYKVVEVNPINKKE-----I-K-WSEYKK-VPILMVDGEQLVDSSAIIDQLDQ 156 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~---~~gi~y~~v~vd~~~~~~-----l-~-~~p~g~-VP~L~~~g~~l~eS~aI~~yL~~ 156 (210)
+.|++|..+|.+.|++.+.+ +.+...+....+....++ + + +..... -.+|+ |..+++-.|. ||++
T Consensus 3 lYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~li--GSSlGG~~A~--~La~ 78 (187)
T PF05728_consen 3 LYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLI--GSSLGGFYAT--YLAE 78 (187)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEE--EEChHHHHHH--HHHH
Confidence 56789999999998876554 456666666555433222 1 1 111111 12222 5666666655 7888
Q ss_pred hcCCCC
Q 028332 157 KLTPKR 162 (210)
Q Consensus 157 ~~~~~~ 162 (210)
+++-+.
T Consensus 79 ~~~~~a 84 (187)
T PF05728_consen 79 RYGLPA 84 (187)
T ss_pred HhCCCE
Confidence 887653
No 254
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=23.66 E-value=96 Score=25.10 Aligned_cols=17 Identities=29% Similarity=0.745 Sum_probs=13.3
Q ss_pred CCCcccEEEECCeEeec
Q 028332 130 EYKKVPILMVDGEQLVD 146 (210)
Q Consensus 130 p~g~VP~L~~~g~~l~e 146 (210)
+-..+|.+++||+.+..
T Consensus 164 gI~gtPtfiInGky~v~ 180 (207)
T PRK10954 164 QLRGVPAMFVNGKYMVN 180 (207)
T ss_pred CCCCCCEEEECCEEEEc
Confidence 44689999999987644
No 255
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=23.15 E-value=2.8e+02 Score=26.06 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=37.1
Q ss_pred CCCCCcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEEC
Q 028332 82 DLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVD 140 (210)
Q Consensus 82 ~~~~~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~ 140 (210)
..+|.-++++..-.+...+.+..+|+...++|+...+. ..|.+|+|.++
T Consensus 57 rtDp~VLVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~----------~kg~lP~LT~~ 105 (487)
T PF12062_consen 57 RTDPKVLVFVESQYSQLGQDIVAILESNRFKYKVEIAS----------GKGDLPVLTDN 105 (487)
T ss_pred CCCCeEEEEEeeccchhhHHHHHHHHhceeeEEEEEcc----------CCCCCCccccC
Confidence 45566666677777999999999999999999887654 34566666654
No 256
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=23.09 E-value=1.9e+02 Score=23.50 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=22.1
Q ss_pred CcEEEEE--eCCChhHHH---HHHHHHhcCCCe------EEEEeC
Q 028332 86 KEVVLYQ--YEACPFCNK---VKAFLDYYDIPY------KVVEVN 119 (210)
Q Consensus 86 ~~v~Ly~--~~~cp~c~k---v~~~L~~~gi~y------~~v~vd 119 (210)
+++.|-. -.+|+.|+. ....|+..|+++ ..+++|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~d 103 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINAD 103 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECc
Confidence 4555544 458999984 344456678988 556655
No 257
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=22.93 E-value=76 Score=21.25 Aligned_cols=21 Identities=33% Similarity=0.728 Sum_probs=15.6
Q ss_pred EEEEEeC----CChhHHHHHHHHHh
Q 028332 88 VVLYQYE----ACPFCNKVKAFLDY 108 (210)
Q Consensus 88 v~Ly~~~----~cp~c~kv~~~L~~ 108 (210)
++||-+- .+.||.||-.+|.+
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 5677543 47899999988864
No 258
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=22.47 E-value=84 Score=20.89 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.1
Q ss_pred EeCCChhHHHHHHHHHhc
Q 028332 92 QYEACPFCNKVKAFLDYY 109 (210)
Q Consensus 92 ~~~~cp~c~kv~~~L~~~ 109 (210)
..++||+|++..-.|.+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 40 WAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EcCcCHHHHhhchhHHHH
Confidence 489999999887766543
No 259
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.26 E-value=1.6e+02 Score=19.66 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCeEEEEeC
Q 028332 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (210)
Q Consensus 89 ~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd 119 (210)
.+..|+....+.++...|+..|++++.+++.
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 3556677778999999999999999998764
No 260
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=21.78 E-value=1e+02 Score=23.32 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=25.9
Q ss_pred CCcEEEEEeC--CChhHHH-------HHHHHHhcCCCeEEEEeCCCChhHH----hhCCCCcccEEEEC
Q 028332 85 PKEVVLYQYE--ACPFCNK-------VKAFLDYYDIPYKVVEVNPINKKEI----KWSEYKKVPILMVD 140 (210)
Q Consensus 85 ~~~v~Ly~~~--~cp~c~k-------v~~~L~~~gi~y~~v~vd~~~~~~l----~~~p~g~VP~L~~~ 140 (210)
.+.+.|+.++ +||.|.. ..-.+...|+ +++.|+.....++ +..+ -..|+|.+.
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v--~vi~Is~d~~~~~~~~~~~~~-~~~~~l~D~ 95 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGV--VVLGISTDKPEKLSRFAEKEL-LNFTLLSDE 95 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhC-CCCeEEECC
Confidence 3445555543 6888864 2223344454 4555554444332 2222 346776543
No 261
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.68 E-value=1.3e+02 Score=22.23 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=12.4
Q ss_pred CcEEEEE--eCCChhHHHHHHHH
Q 028332 86 KEVVLYQ--YEACPFCNKVKAFL 106 (210)
Q Consensus 86 ~~v~Ly~--~~~cp~c~kv~~~L 106 (210)
+.+.|+. ..+||.|.+..-.|
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l 51 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCAL 51 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHH
Confidence 4444444 46799998544333
No 262
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=21.55 E-value=3.5e+02 Score=20.14 Aligned_cols=55 Identities=9% Similarity=0.121 Sum_probs=28.9
Q ss_pred cEEEEEe--CCCh---hHHHHHHHHHhcC--CCeEEEEeCCC---ChhHH-hhCCCC--cccEEEE--CC
Q 028332 87 EVVLYQY--EACP---FCNKVKAFLDYYD--IPYKVVEVNPI---NKKEI-KWSEYK--KVPILMV--DG 141 (210)
Q Consensus 87 ~v~Ly~~--~~cp---~c~kv~~~L~~~g--i~y~~v~vd~~---~~~~l-~~~p~g--~VP~L~~--~g 141 (210)
-++-|+. |+|. .|.+..-.+.... |.+-.++++.. ...++ +...-. ..|+|.. +|
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 4556666 8888 7777665554432 44444444311 11234 233433 6887753 55
No 263
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=21.42 E-value=2e+02 Score=25.69 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=39.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-------CCeEEEEeCCCChhHHh-hCCCCcccEEEE--CCeEe-----ecHHHHHH
Q 028332 88 VVLYQYEACPFCNKVKAFLDYYD-------IPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL-----VDSSAIID 152 (210)
Q Consensus 88 v~Ly~~~~cp~c~kv~~~L~~~g-------i~y~~v~vd~~~~~~l~-~~p~g~VP~L~~--~g~~l-----~eS~aI~~ 152 (210)
++=|+.|||.+|.|..-+-.+-| +|.++=.+|-...+.+. .-+-+.-|.|.. +|..+ -+-.+|++
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~iie 126 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAIIE 126 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccHHHHHH
Confidence 34478899999998776665554 44444333322233332 334445566543 44333 24578888
Q ss_pred HHHhhc
Q 028332 153 QLDQKL 158 (210)
Q Consensus 153 yL~~~~ 158 (210)
+-.+.-
T Consensus 127 FAhR~a 132 (468)
T KOG4277|consen 127 FAHRCA 132 (468)
T ss_pred HHHhcc
Confidence 766643
No 264
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=21.34 E-value=96 Score=22.70 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCcEEEEEe--CCChhHHHHHHH-------HHhcCCCeEEEEeCCCChhHH----hhCCCCcccEEEECC
Q 028332 85 PKEVVLYQY--EACPFCNKVKAF-------LDYYDIPYKVVEVNPINKKEI----KWSEYKKVPILMVDG 141 (210)
Q Consensus 85 ~~~v~Ly~~--~~cp~c~kv~~~-------L~~~gi~y~~v~vd~~~~~~l----~~~p~g~VP~L~~~g 141 (210)
.+.+.|+.+ .+||.|...... +...|+ +++.|.......+ +..+. .+|++.+.+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~-~~~~l~D~~ 89 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDSVESHAKFAEKYGL-PFPLLSDPD 89 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhCC-CceEEECCc
Confidence 344555544 579999753222 233455 4455543333332 22232 467766543
No 265
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=21.19 E-value=6.8e+02 Score=23.35 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=50.3
Q ss_pred CCCcEEEEE-----eCCChhHHHHHHHHHhcCCCeEEEEeCCCChhHHhhCCCCcccEEEECCeEeecHHHHHHHHHhhc
Q 028332 84 VPKEVVLYQ-----YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (210)
Q Consensus 84 ~~~~v~Ly~-----~~~cp~c~kv~~~L~~~gi~y~~v~vd~~~~~~l~~~p~g~VP~L~~~g~~l~eS~aI~~yL~~~~ 158 (210)
.++.|-|.+ +.+..-++.++-+|+..|+++..+.-.-..-++++..+...+=++. +..+.++|+++|
T Consensus 151 ~~~~VNIiG~~~g~~~~~~Dl~ElkrlL~~~Gi~vn~v~~~Gtsv~di~~l~~A~~nIv~--------~~~~a~~L~e~~ 222 (468)
T TIGR02014 151 AKPRVNIIGPTYGCFNMPSDLAEIRRLVEGIGAEVAHVYPLGSHLAEITKLKNADANIVM--------YREFGRGLAEKL 222 (468)
T ss_pred CCCeEEEECCCcCcCCChhHHHHHHHHHHHcCCcEEEEcCCcCCHHHHHhhccCcEEEee--------cHHHHHHHHHHH
Confidence 345687775 4445678999999999999986654322233445544444332222 123788888888
Q ss_pred CCCCCCCCCCChHHHHHHHH
Q 028332 159 TPKRKADSPSGDDEEKKWRG 178 (210)
Q Consensus 159 ~~~~~~~~~~~~~~~~~w~~ 178 (210)
+.+-..-|.. -.....|+.
T Consensus 223 GvP~l~~PiG-l~~Td~fLr 241 (468)
T TIGR02014 223 GKPYLQAPIG-IESTTAFLR 241 (468)
T ss_pred CCCccccCCC-HHHHHHHHH
Confidence 7764322332 334444443
No 266
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=20.65 E-value=1.2e+02 Score=22.76 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCCCcccEEEECC-eEeecHHHHHHHHHh
Q 028332 129 SEYKKVPILMVDG-EQLVDSSAIIDQLDQ 156 (210)
Q Consensus 129 ~p~g~VP~L~~~g-~~l~eS~aI~~yL~~ 156 (210)
.+-.|+|.+++|+ .++++..+|..-+..
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHHHHH
Confidence 4778999988765 588999888877654
No 267
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.33 E-value=3.3e+02 Score=20.13 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=40.4
Q ss_pred EEEEEeCCChhH------HHHHHHHHhcCCCeEEEEeCCCC----------hhHHh-hCCCCcccEEEECCeEeecHHHH
Q 028332 88 VVLYQYEACPFC------NKVKAFLDYYDIPYKVVEVNPIN----------KKEIK-WSEYKKVPILMVDGEQLVDSSAI 150 (210)
Q Consensus 88 v~Ly~~~~cp~c------~kv~~~L~~~gi~y~~v~vd~~~----------~~~l~-~~p~g~VP~L~~~g~~l~eS~aI 150 (210)
+++|....++.. +.+-.+|+.+.|+|+.+++.... .++.+ .++.-.-|.|+.+++..+|-..-
T Consensus 4 irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~F 83 (108)
T KOG4023|consen 4 IRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYELF 83 (108)
T ss_pred eEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHHH
Confidence 455555444433 35678888889999998874211 11223 55666778887766666665554
Q ss_pred HHHH
Q 028332 151 IDQL 154 (210)
Q Consensus 151 ~~yL 154 (210)
.+-.
T Consensus 84 ~ea~ 87 (108)
T KOG4023|consen 84 FEAV 87 (108)
T ss_pred HHHH
Confidence 4443
No 268
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=20.32 E-value=78 Score=28.21 Aligned_cols=77 Identities=25% Similarity=0.442 Sum_probs=44.5
Q ss_pred CCCcEEE--EEeCCChhHHHHHHHHHhcCCCeE-------EE--EeCCCChhHHh-hCCCCcccEEEE--CCeEee-c--
Q 028332 84 VPKEVVL--YQYEACPFCNKVKAFLDYYDIPYK-------VV--EVNPINKKEIK-WSEYKKVPILMV--DGEQLV-D-- 146 (210)
Q Consensus 84 ~~~~v~L--y~~~~cp~c~kv~~~L~~~gi~y~-------~v--~vd~~~~~~l~-~~p~g~VP~L~~--~g~~l~-e-- 146 (210)
..+.+++ |+..||+|+++.+-.+.+.--.|+ .+ .||-.....+. ..--.|.|.|.+ ||..+. |
T Consensus 11 ~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYR 90 (375)
T KOG0912|consen 11 DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYR 90 (375)
T ss_pred ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhc
Confidence 3355554 678899999999988887643322 11 12211122222 334456677653 777665 1
Q ss_pred ----HHHHHHHHHhhcCC
Q 028332 147 ----SSAIIDQLDQKLTP 160 (210)
Q Consensus 147 ----S~aI~~yL~~~~~~ 160 (210)
--+.++|+..+...
T Consensus 91 g~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 91 GQRSVEALIEFIEKQLSD 108 (375)
T ss_pred cchhHHHHHHHHHHHhcc
Confidence 24788888876544
No 269
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=20.14 E-value=2.2e+02 Score=24.18 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=37.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCeEEEEeCCC-ChhHHh--hCCCCcccEEEECCeE
Q 028332 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI-NKKEIK--WSEYKKVPILMVDGEQ 143 (210)
Q Consensus 86 ~~v~Ly~~~~cp~c~kv~~~L~~~gi~y~~v~vd~~-~~~~l~--~~p~g~VP~L~~~g~~ 143 (210)
+.+.||+-|+|+=..-++++..+.|.+|....-... ...++. +...+.=.+|++|..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIH 111 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIH 111 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCC
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechh
Confidence 469999999999999999999999999987654322 233432 3333445588887643
Done!