Query 028333
Match_columns 210
No_of_seqs 205 out of 2037
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3063 PilF Tfp pilus assembl 99.5 2.5E-13 5.4E-18 98.6 11.1 120 64-209 52-171 (250)
2 PRK10370 formate-dependent nit 99.5 7.2E-13 1.6E-17 97.3 13.3 102 96-209 72-176 (198)
3 KOG4626 O-linked N-acetylgluco 99.5 7.6E-13 1.6E-17 108.1 11.2 101 96-208 353-453 (966)
4 PRK15359 type III secretion sy 99.4 1.4E-12 3E-17 91.1 10.7 99 100-210 27-125 (144)
5 KOG1130 Predicted G-alpha GTPa 99.4 1.3E-12 2.7E-17 102.4 10.6 118 90-207 228-345 (639)
6 PF13424 TPR_12: Tetratricopep 99.4 1.8E-12 3.9E-17 80.9 9.2 74 135-208 3-77 (78)
7 KOG1130 Predicted G-alpha GTPa 99.4 4E-13 8.6E-18 105.1 6.7 134 65-208 173-306 (639)
8 PF13424 TPR_12: Tetratricopep 99.4 1.3E-11 2.8E-16 77.0 11.3 73 96-168 4-77 (78)
9 KOG4626 O-linked N-acetylgluco 99.4 3.4E-12 7.3E-17 104.4 10.7 98 99-208 322-419 (966)
10 PRK15363 pathogenicity island 99.4 2.2E-11 4.7E-16 84.5 12.5 102 94-207 32-133 (157)
11 KOG0553 TPR repeat-containing 99.4 7.1E-12 1.5E-16 94.4 10.4 105 93-209 77-181 (304)
12 TIGR02552 LcrH_SycD type III s 99.4 2.2E-11 4.7E-16 84.0 11.5 102 96-209 16-117 (135)
13 PRK11189 lipoprotein NlpI; Pro 99.3 2.2E-11 4.8E-16 95.0 12.8 104 95-210 62-165 (296)
14 CHL00033 ycf3 photosystem I as 99.3 1.2E-10 2.5E-15 83.5 13.4 108 91-207 29-143 (168)
15 TIGR02521 type_IV_pilW type IV 99.3 9.1E-11 2E-15 87.3 13.1 98 99-206 101-198 (234)
16 PRK02603 photosystem I assembl 99.3 2.1E-10 4.5E-15 82.5 14.2 94 90-192 28-121 (172)
17 PF12895 Apc3: Anaphase-promot 99.3 9E-11 2E-15 74.2 9.9 84 109-203 1-84 (84)
18 PLN03088 SGT1, suppressor of 99.3 9.4E-11 2E-15 93.6 12.1 99 100-210 5-103 (356)
19 PF14938 SNAP: Soluble NSF att 99.3 4.8E-10 1E-14 86.9 15.8 132 64-206 52-184 (282)
20 KOG1840 Kinesin light chain [C 99.2 9.7E-10 2.1E-14 90.4 17.2 138 63-208 257-398 (508)
21 TIGR02795 tol_pal_ybgF tol-pal 99.2 6.8E-10 1.5E-14 74.5 13.0 105 99-209 4-108 (119)
22 PF14938 SNAP: Soluble NSF att 99.2 4E-10 8.6E-15 87.4 13.1 112 97-209 35-147 (282)
23 PF13414 TPR_11: TPR repeat; P 99.2 1.2E-10 2.7E-15 70.7 8.3 66 137-208 3-69 (69)
24 TIGR00990 3a0801s09 mitochondr 99.2 2.2E-10 4.7E-15 98.1 12.5 94 101-206 403-496 (615)
25 TIGR00990 3a0801s09 mitochondr 99.2 3E-10 6.4E-15 97.3 13.1 101 96-208 330-430 (615)
26 cd00189 TPR Tetratricopeptide 99.2 2.4E-10 5.2E-15 72.5 9.3 98 99-208 2-99 (100)
27 KOG1941 Acetylcholine receptor 99.2 2.4E-10 5.2E-15 88.4 10.6 135 63-207 138-276 (518)
28 KOG1155 Anaphase-promoting com 99.2 3.1E-10 6.6E-15 90.2 11.4 98 97-206 364-461 (559)
29 KOG1173 Anaphase-promoting com 99.2 1.5E-10 3.2E-15 93.8 9.8 107 97-209 414-521 (611)
30 COG3063 PilF Tfp pilus assembl 99.2 5.1E-10 1.1E-14 81.6 11.5 99 96-206 34-132 (250)
31 KOG1840 Kinesin light chain [C 99.2 1.4E-09 3.1E-14 89.4 14.7 114 95-208 197-314 (508)
32 PF09976 TPR_21: Tetratricopep 99.1 4E-09 8.7E-14 73.7 14.1 100 95-204 46-145 (145)
33 TIGR02521 type_IV_pilW type IV 99.1 1.9E-09 4E-14 80.2 12.2 103 97-209 65-167 (234)
34 PRK10803 tol-pal system protei 99.1 3.9E-09 8.5E-14 80.6 13.6 106 98-209 143-249 (263)
35 KOG1126 DNA-binding cell divis 99.1 2E-10 4.3E-15 94.5 6.5 62 139-206 491-552 (638)
36 KOG1155 Anaphase-promoting com 99.1 1.4E-09 3E-14 86.6 10.6 105 91-207 392-496 (559)
37 PF13414 TPR_11: TPR repeat; P 99.1 1.1E-09 2.4E-14 66.4 8.0 65 97-167 3-68 (69)
38 PRK09782 bacteriophage N4 rece 99.1 2.3E-09 5.1E-14 95.2 12.9 101 97-209 609-709 (987)
39 KOG0553 TPR repeat-containing 99.1 4.7E-09 1E-13 79.4 11.9 121 46-194 80-200 (304)
40 KOG1126 DNA-binding cell divis 99.1 7.8E-10 1.7E-14 91.1 8.3 105 93-209 485-589 (638)
41 KOG0543 FKBP-type peptidyl-pro 99.0 3.6E-09 7.7E-14 83.1 11.5 108 96-209 207-323 (397)
42 KOG1125 TPR repeat-containing 99.0 4E-10 8.7E-15 91.5 5.2 102 96-209 429-530 (579)
43 TIGR03302 OM_YfiO outer membra 99.0 9.5E-09 2.1E-13 77.5 12.5 110 97-209 70-198 (235)
44 PRK12370 invasion protein regu 99.0 3.9E-09 8.4E-14 89.3 11.2 99 96-206 337-435 (553)
45 PRK12370 invasion protein regu 99.0 6.4E-09 1.4E-13 88.0 12.4 99 97-206 372-470 (553)
46 TIGR03302 OM_YfiO outer membra 99.0 1.1E-08 2.4E-13 77.1 11.7 108 96-209 32-147 (235)
47 PF13432 TPR_16: Tetratricopep 99.0 3.3E-09 7.1E-14 63.5 6.7 63 142-210 2-64 (65)
48 COG1729 Uncharacterized protei 98.9 3.2E-08 6.9E-13 74.4 12.2 104 100-209 144-247 (262)
49 PRK15174 Vi polysaccharide exp 98.9 2E-08 4.4E-13 86.5 12.3 94 100-205 249-346 (656)
50 PF12688 TPR_5: Tetratrico pep 98.9 1.4E-07 3.1E-12 63.3 13.7 101 99-205 3-103 (120)
51 KOG2003 TPR repeat-containing 98.9 4.8E-09 1E-13 83.7 7.7 107 92-210 485-591 (840)
52 PRK15331 chaperone protein Sic 98.9 2.4E-08 5.2E-13 69.8 10.1 104 91-206 31-134 (165)
53 PRK11447 cellulose synthase su 98.9 2.9E-08 6.3E-13 90.7 13.5 107 97-209 303-417 (1157)
54 PRK15174 Vi polysaccharide exp 98.9 2.4E-08 5.3E-13 86.0 12.4 102 96-209 283-384 (656)
55 KOG0548 Molecular co-chaperone 98.9 1.7E-08 3.8E-13 81.6 10.5 99 99-209 360-458 (539)
56 PRK11788 tetratricopeptide rep 98.9 7.5E-08 1.6E-12 77.9 14.2 104 98-208 108-211 (389)
57 PRK11189 lipoprotein NlpI; Pro 98.9 5E-08 1.1E-12 76.2 12.0 98 96-206 97-194 (296)
58 PRK15359 type III secretion sy 98.9 1.6E-08 3.4E-13 70.6 8.2 83 96-190 57-139 (144)
59 PRK11788 tetratricopeptide rep 98.8 3.2E-07 6.9E-12 74.2 16.4 94 101-205 184-277 (389)
60 PF13429 TPR_15: Tetratricopep 98.8 2.2E-08 4.7E-13 77.6 8.5 103 96-210 145-247 (280)
61 TIGR02917 PEP_TPR_lipo putativ 98.8 6.9E-08 1.5E-12 85.2 11.9 99 97-208 770-868 (899)
62 KOG4555 TPR repeat-containing 98.8 1.5E-07 3.3E-12 63.0 10.5 99 100-206 46-144 (175)
63 PRK15179 Vi polysaccharide bio 98.8 1E-07 2.2E-12 81.9 11.9 99 97-207 120-218 (694)
64 KOG1941 Acetylcholine receptor 98.8 4.8E-07 1E-11 70.5 14.3 110 98-207 123-236 (518)
65 KOG4234 TPR repeat-containing 98.8 1.9E-07 4E-12 67.1 11.1 106 96-208 94-199 (271)
66 PRK15179 Vi polysaccharide bio 98.8 1.3E-07 2.8E-12 81.3 12.4 98 96-205 85-182 (694)
67 COG4235 Cytochrome c biogenesi 98.8 1.1E-07 2.4E-12 72.3 10.6 103 96-210 155-260 (287)
68 KOG1173 Anaphase-promoting com 98.8 4.7E-08 1E-12 79.6 8.6 105 100-210 383-488 (611)
69 PRK09782 bacteriophage N4 rece 98.7 2.1E-07 4.6E-12 83.0 13.3 96 102-210 581-676 (987)
70 PF13432 TPR_16: Tetratricopep 98.7 4.3E-08 9.3E-13 58.6 6.3 61 101-167 1-61 (65)
71 PRK11447 cellulose synthase su 98.7 1.6E-07 3.5E-12 85.9 12.6 107 97-209 385-527 (1157)
72 KOG0547 Translocase of outer m 98.7 5.2E-08 1.1E-12 78.3 8.2 94 95-200 113-206 (606)
73 PF13525 YfiO: Outer membrane 98.7 5.7E-07 1.2E-11 66.4 12.8 108 96-209 4-122 (203)
74 KOG0547 Translocase of outer m 98.7 6.7E-08 1.5E-12 77.7 8.0 99 98-208 395-493 (606)
75 cd05804 StaR_like StaR_like; a 98.7 1.7E-07 3.8E-12 74.9 10.3 102 96-205 113-214 (355)
76 KOG1586 Protein required for f 98.7 7.3E-07 1.6E-11 65.5 12.4 112 97-209 34-146 (288)
77 COG5010 TadD Flp pilus assembl 98.7 2.2E-07 4.8E-12 69.2 9.9 97 99-207 102-198 (257)
78 TIGR02917 PEP_TPR_lipo putativ 98.7 3E-07 6.6E-12 81.2 12.5 105 93-209 121-225 (899)
79 PLN03088 SGT1, suppressor of 98.7 2.7E-07 5.9E-12 73.9 11.0 101 63-191 18-118 (356)
80 PF13512 TPR_18: Tetratricopep 98.6 2.3E-06 5E-11 58.6 13.1 106 98-209 11-131 (142)
81 KOG1129 TPR repeat-containing 98.6 3.9E-08 8.5E-13 75.5 4.5 92 104-204 331-422 (478)
82 PRK10866 outer membrane biogen 98.6 1.4E-06 3.1E-11 66.0 12.9 105 99-209 34-156 (243)
83 PRK10049 pgaA outer membrane p 98.6 6.8E-07 1.5E-11 78.6 12.5 100 97-209 49-148 (765)
84 PRK02603 photosystem I assembl 98.6 1.8E-06 4E-11 62.0 12.5 76 131-209 29-104 (172)
85 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.9E-07 6.2E-12 74.1 8.9 69 92-166 70-141 (453)
86 COG2976 Uncharacterized protei 98.6 1.8E-05 3.9E-10 56.8 16.6 102 96-207 88-189 (207)
87 KOG2002 TPR-containing nuclear 98.6 2.5E-07 5.4E-12 79.7 8.5 105 96-210 645-749 (1018)
88 TIGR02552 LcrH_SycD type III s 98.6 4.6E-07 9.9E-12 62.2 8.4 80 118-209 4-83 (135)
89 KOG0548 Molecular co-chaperone 98.6 2.7E-07 5.8E-12 74.9 7.9 98 100-209 5-102 (539)
90 PRK10370 formate-dependent nit 98.6 6.7E-07 1.4E-11 65.7 9.4 89 110-210 52-143 (198)
91 KOG1129 TPR repeat-containing 98.6 2.5E-07 5.3E-12 71.2 7.1 102 96-209 289-390 (478)
92 PRK10049 pgaA outer membrane p 98.6 1.3E-06 2.9E-11 76.8 12.5 103 96-210 358-460 (765)
93 PF13371 TPR_9: Tetratricopept 98.5 4.2E-07 9.1E-12 55.5 6.8 59 144-208 2-60 (73)
94 KOG2002 TPR-containing nuclear 98.5 2E-06 4.3E-11 74.3 12.8 104 98-209 271-374 (1018)
95 PF13429 TPR_15: Tetratricopep 98.5 3.1E-07 6.7E-12 71.2 7.4 97 99-207 182-278 (280)
96 KOG0550 Molecular chaperone (D 98.5 5.3E-07 1.2E-11 71.2 8.6 104 96-207 248-351 (486)
97 PLN02789 farnesyltranstransfer 98.5 3.5E-06 7.6E-11 66.4 13.2 98 98-207 72-172 (320)
98 KOG0543 FKBP-type peptidyl-pro 98.5 2.2E-06 4.9E-11 67.7 11.5 100 96-207 256-356 (397)
99 PRK15363 pathogenicity island 98.5 1.8E-06 3.9E-11 60.2 9.3 71 134-210 32-102 (157)
100 CHL00033 ycf3 photosystem I as 98.5 2.3E-06 4.9E-11 61.2 9.9 91 111-208 13-103 (168)
101 PRK04841 transcriptional regul 98.5 1.1E-05 2.3E-10 72.4 16.2 113 96-208 490-604 (903)
102 KOG0551 Hsp90 co-chaperone CNS 98.5 2.4E-06 5.2E-11 65.9 10.2 109 91-207 75-183 (390)
103 COG2956 Predicted N-acetylgluc 98.5 2.9E-05 6.3E-10 59.9 15.9 64 136-205 179-242 (389)
104 KOG1125 TPR repeat-containing 98.5 5.6E-06 1.2E-10 67.9 12.7 144 42-208 313-495 (579)
105 COG5010 TadD Flp pilus assembl 98.5 2.4E-06 5.2E-11 63.8 9.8 93 96-200 133-225 (257)
106 PF12895 Apc3: Anaphase-promot 98.4 1.7E-06 3.7E-11 54.4 7.8 61 96-163 24-84 (84)
107 PF09976 TPR_21: Tetratricopep 98.4 3.5E-05 7.5E-10 53.7 14.4 102 95-202 9-110 (145)
108 PF14559 TPR_19: Tetratricopep 98.4 7.4E-07 1.6E-11 53.6 5.1 55 148-208 2-56 (68)
109 COG2956 Predicted N-acetylgluc 98.4 2.6E-05 5.5E-10 60.2 14.3 103 95-208 178-280 (389)
110 PF13371 TPR_9: Tetratricopept 98.4 2.7E-06 5.8E-11 51.9 7.5 58 104-167 2-59 (73)
111 PF14559 TPR_19: Tetratricopep 98.4 1.3E-06 2.8E-11 52.5 5.9 66 108-185 2-67 (68)
112 KOG2076 RNA polymerase III tra 98.4 3.8E-06 8.3E-11 72.0 10.3 98 95-203 412-509 (895)
113 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.1E-06 2.4E-11 70.8 6.8 70 134-206 72-141 (453)
114 COG4700 Uncharacterized protei 98.4 1.8E-05 3.9E-10 56.5 11.9 102 98-208 90-191 (251)
115 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.2E-05 2.6E-10 64.9 12.3 91 100-202 203-293 (395)
116 KOG3060 Uncharacterized conser 98.3 3.2E-05 6.9E-10 57.7 13.2 101 96-208 119-222 (289)
117 KOG2076 RNA polymerase III tra 98.3 1.1E-05 2.3E-10 69.4 12.1 102 96-209 138-239 (895)
118 KOG4648 Uncharacterized conser 98.3 1.5E-06 3.2E-11 67.5 6.4 97 100-208 100-196 (536)
119 KOG1585 Protein required for f 98.3 6.9E-05 1.5E-09 55.8 14.7 114 96-210 30-143 (308)
120 PRK04841 transcriptional regul 98.3 2.9E-05 6.3E-10 69.7 15.2 116 91-207 525-642 (903)
121 PF12862 Apc5: Anaphase-promot 98.3 2E-05 4.4E-10 50.7 10.5 81 107-187 8-91 (94)
122 cd00189 TPR Tetratricopeptide 98.3 4E-06 8.7E-11 52.6 7.3 65 139-209 2-66 (100)
123 KOG2003 TPR repeat-containing 98.3 1.8E-05 3.9E-10 63.7 12.0 119 64-210 575-693 (840)
124 PRK10866 outer membrane biogen 98.3 7.8E-05 1.7E-09 56.6 14.8 110 97-209 69-207 (243)
125 KOG4162 Predicted calmodulin-b 98.3 8.6E-06 1.9E-10 68.9 10.0 100 97-208 684-785 (799)
126 KOG0624 dsRNA-activated protei 98.3 1E-05 2.3E-10 62.9 9.5 104 93-208 34-137 (504)
127 KOG1586 Protein required for f 98.3 3.3E-05 7.1E-10 57.0 11.5 114 91-205 68-182 (288)
128 cd05804 StaR_like StaR_like; a 98.2 1E-05 2.2E-10 64.7 9.7 97 104-208 83-179 (355)
129 PRK14720 transcript cleavage f 98.2 1.4E-05 3.1E-10 70.1 11.0 102 97-207 65-179 (906)
130 PF09986 DUF2225: Uncharacteri 98.2 3.1E-05 6.7E-10 57.5 11.3 101 106-206 86-194 (214)
131 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.7E-05 3.7E-10 52.8 9.2 69 137-208 2-70 (119)
132 PRK14574 hmsH outer membrane p 98.2 3E-05 6.4E-10 68.3 12.4 100 97-209 102-201 (822)
133 PF00515 TPR_1: Tetratricopept 98.2 4E-06 8.7E-11 43.0 4.2 32 178-209 2-33 (34)
134 KOG4642 Chaperone-dependent E3 98.2 5E-06 1.1E-10 61.4 5.7 98 99-208 12-109 (284)
135 PF12968 DUF3856: Domain of Un 98.2 0.00058 1.3E-08 45.1 14.6 108 101-208 13-131 (144)
136 TIGR00540 hemY_coli hemY prote 98.1 0.00016 3.5E-09 59.2 14.9 97 99-206 120-216 (409)
137 PRK14574 hmsH outer membrane p 98.1 4E-05 8.7E-10 67.5 11.9 60 141-206 106-165 (822)
138 PLN02789 farnesyltranstransfer 98.1 5.9E-05 1.3E-09 59.5 11.7 102 97-210 106-216 (320)
139 PF07719 TPR_2: Tetratricopept 98.1 9.8E-06 2.1E-10 41.4 4.8 33 178-210 2-34 (34)
140 PF10602 RPN7: 26S proteasome 98.1 0.0011 2.4E-08 47.8 16.5 107 97-206 36-142 (177)
141 PF12688 TPR_5: Tetratrico pep 98.1 4E-05 8.6E-10 51.5 8.3 69 138-209 2-70 (120)
142 PF06552 TOM20_plant: Plant sp 98.1 5E-05 1.1E-09 53.9 9.0 83 113-207 7-110 (186)
143 COG4783 Putative Zn-dependent 98.1 7.6E-05 1.6E-09 60.4 10.9 92 101-204 344-435 (484)
144 KOG0624 dsRNA-activated protei 98.1 0.00053 1.1E-08 53.7 15.0 105 96-206 105-218 (504)
145 PRK10153 DNA-binding transcrip 98.0 7.6E-05 1.6E-09 62.6 11.4 66 137-209 420-485 (517)
146 PF13525 YfiO: Outer membrane 98.0 9.2E-05 2E-09 54.7 10.7 109 98-209 43-173 (203)
147 PRK10747 putative protoheme IX 98.0 8.8E-05 1.9E-09 60.5 11.1 102 99-207 265-391 (398)
148 KOG1128 Uncharacterized conser 98.0 2.2E-05 4.8E-10 66.2 7.4 96 99-206 487-582 (777)
149 COG4785 NlpI Lipoprotein NlpI, 98.0 1.8E-05 4E-10 57.8 5.9 103 95-209 63-165 (297)
150 PRK10747 putative protoheme IX 98.0 0.00043 9.3E-09 56.5 14.5 95 100-205 121-215 (398)
151 KOG3060 Uncharacterized conser 98.0 0.00014 3.1E-09 54.4 10.4 95 101-207 90-184 (289)
152 PRK10803 tol-pal system protei 98.0 0.00013 2.7E-09 56.0 10.7 68 97-167 180-247 (263)
153 PF13176 TPR_7: Tetratricopept 98.0 3.4E-05 7.4E-10 40.1 5.0 28 140-167 2-29 (36)
154 PRK14720 transcript cleavage f 97.9 6.9E-05 1.5E-09 66.0 9.4 106 96-209 30-148 (906)
155 KOG4234 TPR repeat-containing 97.9 0.00037 8.1E-09 50.5 11.5 88 63-167 111-198 (271)
156 KOG4555 TPR repeat-containing 97.9 0.00058 1.3E-08 46.1 11.6 87 63-167 59-145 (175)
157 COG4783 Putative Zn-dependent 97.9 0.00015 3.3E-09 58.8 10.6 103 95-209 304-406 (484)
158 PF10300 DUF3808: Protein of u 97.9 0.00022 4.8E-09 59.3 11.9 104 97-207 267-377 (468)
159 PF12569 NARP1: NMDA receptor- 97.9 0.00021 4.5E-09 59.9 11.6 100 91-202 188-287 (517)
160 PF13176 TPR_7: Tetratricopept 97.9 2.8E-05 6E-10 40.5 4.2 30 179-208 1-30 (36)
161 TIGR00540 hemY_coli hemY prote 97.9 0.00015 3.4E-09 59.3 10.6 106 97-207 263-400 (409)
162 KOG0550 Molecular chaperone (D 97.9 4.3E-05 9.4E-10 60.7 6.3 112 94-207 200-317 (486)
163 KOG0545 Aryl-hydrocarbon recep 97.8 0.00079 1.7E-08 50.3 12.3 107 95-207 176-294 (329)
164 PF00515 TPR_1: Tetratricopept 97.8 6.6E-05 1.4E-09 38.3 4.8 31 137-167 1-31 (34)
165 PF13181 TPR_8: Tetratricopept 97.8 8E-05 1.7E-09 38.0 4.8 31 178-208 2-32 (34)
166 PF13431 TPR_17: Tetratricopep 97.7 3.6E-05 7.8E-10 39.5 2.7 32 160-197 2-33 (34)
167 KOG3785 Uncharacterized conser 97.7 0.0018 3.8E-08 51.1 12.8 29 96-124 56-84 (557)
168 PRK15331 chaperone protein Sic 97.7 0.00048 1E-08 48.5 8.9 74 130-209 30-103 (165)
169 PF13428 TPR_14: Tetratricopep 97.7 0.00013 2.8E-09 39.7 4.7 42 138-185 2-43 (44)
170 PRK11906 transcriptional regul 97.7 0.0005 1.1E-08 55.9 9.7 100 97-208 295-403 (458)
171 KOG1156 N-terminal acetyltrans 97.6 0.00019 4.1E-09 60.1 7.2 99 99-209 9-107 (700)
172 KOG1174 Anaphase-promoting com 97.6 0.00041 8.8E-09 55.5 8.5 98 100-209 303-400 (564)
173 PF07719 TPR_2: Tetratricopept 97.6 0.0002 4.4E-09 36.3 4.8 30 138-167 2-31 (34)
174 PF03704 BTAD: Bacterial trans 97.6 0.0059 1.3E-07 42.4 13.5 104 99-208 8-127 (146)
175 COG1729 Uncharacterized protei 97.6 0.00094 2E-08 50.6 9.8 69 96-167 177-245 (262)
176 KOG2796 Uncharacterized conser 97.6 0.0017 3.7E-08 49.1 10.9 106 97-208 212-317 (366)
177 KOG2376 Signal recognition par 97.6 0.0021 4.6E-08 53.6 12.2 112 99-210 112-257 (652)
178 KOG2471 TPR repeat-containing 97.6 0.00067 1.4E-08 55.4 9.1 121 64-190 250-382 (696)
179 COG4105 ComL DNA uptake lipopr 97.6 0.0053 1.1E-07 46.3 13.1 107 97-209 34-148 (254)
180 PF10579 Rapsyn_N: Rapsyn N-te 97.5 0.0038 8.1E-08 38.2 10.0 74 97-173 6-79 (80)
181 PF12862 Apc5: Anaphase-promot 97.5 0.00092 2E-08 42.9 7.9 63 147-209 8-73 (94)
182 KOG1128 Uncharacterized conser 97.5 0.00025 5.5E-09 60.1 6.3 101 95-207 517-617 (777)
183 KOG2471 TPR repeat-containing 97.5 0.00027 5.8E-09 57.6 6.0 109 99-208 242-366 (696)
184 PF09986 DUF2225: Uncharacteri 97.5 0.001 2.2E-08 49.5 8.6 96 63-167 93-195 (214)
185 PF12569 NARP1: NMDA receptor- 97.5 0.00092 2E-08 56.1 9.1 69 134-208 191-259 (517)
186 COG3071 HemY Uncharacterized e 97.5 0.0086 1.9E-07 47.7 13.6 102 100-208 266-392 (400)
187 PF13181 TPR_8: Tetratricopept 97.5 0.00051 1.1E-08 34.9 4.9 30 138-167 2-31 (34)
188 COG4105 ComL DNA uptake lipopr 97.5 0.017 3.7E-07 43.6 14.6 105 99-209 73-199 (254)
189 KOG1174 Anaphase-promoting com 97.5 0.0015 3.3E-08 52.3 9.5 66 95-166 332-397 (564)
190 KOG0376 Serine-threonine phosp 97.4 8.5E-05 1.8E-09 60.2 2.6 99 100-210 7-105 (476)
191 PF13512 TPR_18: Tetratricopep 97.4 0.0029 6.2E-08 43.6 9.5 71 136-209 9-79 (142)
192 PF13174 TPR_6: Tetratricopept 97.4 0.00034 7.3E-09 35.2 3.9 31 179-209 2-32 (33)
193 PRK10153 DNA-binding transcrip 97.4 0.004 8.6E-08 52.5 12.1 105 94-208 336-451 (517)
194 KOG2796 Uncharacterized conser 97.4 0.0015 3.3E-08 49.4 8.4 106 98-208 178-283 (366)
195 KOG1127 TPR repeat-containing 97.4 0.002 4.3E-08 56.8 10.0 110 92-207 591-701 (1238)
196 KOG3785 Uncharacterized conser 97.3 0.00079 1.7E-08 53.0 6.6 87 106-203 31-117 (557)
197 PF13428 TPR_14: Tetratricopep 97.3 0.00055 1.2E-08 37.2 4.3 33 178-210 2-34 (44)
198 PF13431 TPR_17: Tetratricopep 97.3 0.00025 5.4E-09 36.3 2.6 32 120-157 2-33 (34)
199 PF04733 Coatomer_E: Coatomer 97.3 0.00054 1.2E-08 53.4 5.5 81 112-204 182-263 (290)
200 PF11817 Foie-gras_1: Foie gra 97.3 0.01 2.2E-07 45.3 12.3 93 111-203 152-244 (247)
201 KOG1127 TPR repeat-containing 97.3 0.001 2.3E-08 58.5 7.4 97 99-207 564-660 (1238)
202 KOG1156 N-terminal acetyltrans 97.3 0.0024 5.3E-08 53.7 9.2 99 96-206 74-172 (700)
203 PF13374 TPR_10: Tetratricopep 97.3 0.00087 1.9E-08 35.6 4.7 28 179-206 4-31 (42)
204 PF13374 TPR_10: Tetratricopep 97.2 0.0013 2.8E-08 34.9 5.0 34 137-170 2-35 (42)
205 KOG2376 Signal recognition par 97.2 0.0067 1.4E-07 50.7 10.8 98 101-207 83-205 (652)
206 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0069 1.5E-07 49.2 10.7 91 105-210 177-267 (395)
207 PF06552 TOM20_plant: Plant sp 97.2 0.007 1.5E-07 43.2 9.4 51 111-167 49-103 (186)
208 KOG1585 Protein required for f 97.2 0.019 4.1E-07 43.2 11.8 98 104-202 78-175 (308)
209 KOG3617 WD40 and TPR repeat-co 97.1 0.035 7.5E-07 48.7 14.3 108 98-205 859-995 (1416)
210 smart00028 TPR Tetratricopepti 97.1 0.0011 2.4E-08 32.4 3.4 30 179-208 3-32 (34)
211 KOG4340 Uncharacterized conser 97.0 0.015 3.3E-07 45.0 10.7 60 141-206 148-207 (459)
212 PF04733 Coatomer_E: Coatomer 97.0 0.0016 3.5E-08 50.8 5.3 95 103-209 137-233 (290)
213 PF10345 Cohesin_load: Cohesin 97.0 0.046 1E-06 47.3 14.4 115 92-207 54-169 (608)
214 PLN03218 maturation of RBCL 1; 96.9 0.028 6E-07 51.5 12.9 94 101-204 653-746 (1060)
215 KOG4340 Uncharacterized conser 96.8 0.0073 1.6E-07 46.7 7.6 102 94-201 141-265 (459)
216 PRK11906 transcriptional regul 96.8 0.0088 1.9E-07 48.9 8.4 92 96-200 337-430 (458)
217 PLN03218 maturation of RBCL 1; 96.8 0.036 7.8E-07 50.8 12.6 59 100-163 582-640 (1060)
218 PF10602 RPN7: 26S proteasome 96.7 0.065 1.4E-06 38.7 11.7 92 114-208 13-104 (177)
219 KOG4642 Chaperone-dependent E3 96.7 0.0067 1.5E-07 45.3 6.5 86 63-170 26-111 (284)
220 COG0457 NrfG FOG: TPR repeat [ 96.7 0.033 7.1E-07 40.2 10.4 94 106-208 139-233 (291)
221 KOG1308 Hsp70-interacting prot 96.7 0.00051 1.1E-08 53.5 0.7 100 95-206 112-211 (377)
222 PF13174 TPR_6: Tetratricopept 96.7 0.0036 7.8E-08 31.2 3.7 30 138-167 1-30 (33)
223 KOG4814 Uncharacterized conser 96.7 0.028 6E-07 47.7 10.5 103 99-207 356-458 (872)
224 PLN03081 pentatricopeptide (PP 96.7 0.021 4.6E-07 50.2 10.5 61 98-163 291-351 (697)
225 KOG0551 Hsp90 co-chaperone CNS 96.7 0.016 3.4E-07 45.4 8.3 77 130-208 74-150 (390)
226 PF10300 DUF3808: Protein of u 96.6 0.015 3.3E-07 48.6 8.9 88 111-206 247-334 (468)
227 KOG0495 HAT repeat protein [RN 96.6 0.019 4E-07 48.9 9.0 90 106-208 627-716 (913)
228 PF08631 SPO22: Meiosis protei 96.6 0.11 2.3E-06 40.4 12.7 91 108-198 4-105 (278)
229 PF04781 DUF627: Protein of un 96.5 0.061 1.3E-06 35.3 9.1 105 103-210 2-111 (111)
230 PLN03081 pentatricopeptide (PP 96.5 0.031 6.7E-07 49.2 10.2 95 99-202 393-487 (697)
231 KOG4648 Uncharacterized conser 96.5 0.061 1.3E-06 42.5 10.5 83 63-167 113-195 (536)
232 KOG4162 Predicted calmodulin-b 96.4 0.047 1E-06 47.2 10.4 100 97-208 650-751 (799)
233 KOG2300 Uncharacterized conser 96.4 0.11 2.4E-06 42.9 12.0 110 92-201 440-551 (629)
234 PRK13184 pknD serine/threonine 96.4 0.017 3.7E-07 51.8 8.2 107 100-209 478-584 (932)
235 PF05843 Suf: Suppressor of fo 96.4 0.038 8.1E-07 43.0 9.2 86 109-206 13-99 (280)
236 KOG0495 HAT repeat protein [RN 96.4 0.03 6.5E-07 47.8 8.9 96 99-206 653-748 (913)
237 PLN03077 Protein ECB2; Provisi 96.4 0.049 1.1E-06 49.0 11.1 98 97-203 554-651 (857)
238 KOG1497 COP9 signalosome, subu 96.3 0.38 8.3E-06 37.7 14.5 112 91-202 97-209 (399)
239 KOG2300 Uncharacterized conser 96.3 0.2 4.2E-06 41.5 12.7 107 93-201 42-151 (629)
240 COG3071 HemY Uncharacterized e 96.2 0.52 1.1E-05 37.9 14.3 98 96-204 117-214 (400)
241 KOG2610 Uncharacterized conser 96.1 0.3 6.5E-06 38.7 12.6 94 103-204 181-274 (491)
242 COG0457 NrfG FOG: TPR repeat [ 96.1 0.2 4.2E-06 36.0 11.6 100 100-208 98-198 (291)
243 PF04184 ST7: ST7 protein; In 96.0 0.22 4.8E-06 41.3 11.8 88 113-204 216-322 (539)
244 smart00028 TPR Tetratricopepti 96.0 0.012 2.6E-07 28.3 3.2 29 138-166 2-30 (34)
245 PF03704 BTAD: Bacterial trans 96.0 0.16 3.4E-06 35.1 9.8 74 96-175 61-135 (146)
246 KOG3081 Vesicle coat complex C 96.0 0.28 6.1E-06 37.5 11.4 53 151-209 187-239 (299)
247 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.029 6.3E-07 31.7 4.7 29 139-167 3-31 (53)
248 PRK10941 hypothetical protein; 95.9 0.12 2.5E-06 40.0 9.4 73 132-210 176-248 (269)
249 COG5187 RPN7 26S proteasome re 95.9 0.42 9.2E-06 37.1 12.0 110 95-207 113-222 (412)
250 PF10516 SHNi-TPR: SHNi-TPR; 95.8 0.019 4.2E-07 30.0 3.4 29 178-206 2-30 (38)
251 KOG1550 Extracellular protein 95.7 0.11 2.4E-06 44.5 9.6 100 97-205 244-356 (552)
252 KOG3617 WD40 and TPR repeat-co 95.7 0.18 3.9E-06 44.5 10.7 92 115-207 837-942 (1416)
253 KOG3081 Vesicle coat complex C 95.6 0.33 7.1E-06 37.1 10.6 79 113-203 189-267 (299)
254 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.22 4.8E-06 30.5 8.0 65 141-208 10-74 (80)
255 PF05843 Suf: Suppressor of fo 95.6 0.34 7.4E-06 37.7 11.1 102 99-209 37-139 (280)
256 PF10516 SHNi-TPR: SHNi-TPR; 95.5 0.051 1.1E-06 28.4 4.2 31 139-169 3-33 (38)
257 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.17 3.7E-06 28.6 6.7 30 179-208 3-32 (53)
258 COG4235 Cytochrome c biogenesi 95.4 0.18 3.9E-06 39.0 8.9 71 133-209 152-225 (287)
259 KOG0687 26S proteasome regulat 95.4 0.86 1.9E-05 36.0 12.5 108 97-207 104-211 (393)
260 PF12968 DUF3856: Domain of Un 95.3 0.51 1.1E-05 31.6 13.3 104 63-170 25-133 (144)
261 PF10345 Cohesin_load: Cohesin 95.2 1.8 4E-05 37.6 16.7 111 96-207 99-209 (608)
262 KOG2581 26S proteasome regulat 95.2 0.37 8.1E-06 39.0 10.2 109 99-209 171-279 (493)
263 KOG1550 Extracellular protein 95.2 0.18 4E-06 43.1 9.2 93 99-207 290-394 (552)
264 PF11817 Foie-gras_1: Foie gra 95.2 0.44 9.6E-06 36.3 10.4 69 95-163 176-244 (247)
265 COG4785 NlpI Lipoprotein NlpI, 95.1 0.35 7.6E-06 36.0 9.1 69 134-208 62-130 (297)
266 KOG1839 Uncharacterized protei 95.1 0.15 3.3E-06 46.7 8.7 111 97-207 973-1087(1236)
267 KOG4507 Uncharacterized conser 95.1 0.06 1.3E-06 45.5 5.8 95 104-209 614-708 (886)
268 COG0790 FOG: TPR repeat, SEL1 95.1 0.78 1.7E-05 35.6 11.9 97 97-206 109-220 (292)
269 COG2976 Uncharacterized protei 95.1 0.69 1.5E-05 33.8 10.4 100 101-203 35-152 (207)
270 COG4700 Uncharacterized protei 95.0 0.96 2.1E-05 33.0 11.2 93 103-207 62-154 (251)
271 PF15015 NYD-SP12_N: Spermatog 95.0 0.42 9.2E-06 39.0 9.9 102 96-203 175-288 (569)
272 KOG4814 Uncharacterized conser 95.0 0.11 2.4E-06 44.3 6.9 72 136-207 353-424 (872)
273 COG2909 MalT ATP-dependent tra 94.8 2.2 4.8E-05 38.1 14.4 91 102-193 463-553 (894)
274 KOG2053 Mitochondrial inherita 94.5 0.19 4E-06 44.4 7.5 88 109-208 21-108 (932)
275 KOG1310 WD40 repeat protein [G 94.5 0.22 4.8E-06 41.7 7.4 97 100-208 377-476 (758)
276 PF07721 TPR_4: Tetratricopept 94.4 0.067 1.4E-06 25.2 2.8 23 179-201 3-25 (26)
277 KOG2047 mRNA splicing factor [ 94.4 1.2 2.6E-05 38.4 11.7 111 96-206 247-416 (835)
278 KOG3364 Membrane protein invol 94.4 0.24 5.1E-06 33.9 6.3 29 177-205 71-99 (149)
279 PLN03077 Protein ECB2; Provisi 94.4 0.57 1.2E-05 42.4 10.7 101 101-205 593-719 (857)
280 KOG3616 Selective LIM binding 94.4 0.29 6.4E-06 42.8 8.2 100 103-203 667-791 (1636)
281 COG3118 Thioredoxin domain-con 94.2 2 4.3E-05 33.5 11.6 101 100-206 137-265 (304)
282 PF02259 FAT: FAT domain; Int 94.2 1.3 2.8E-05 35.2 11.4 114 93-208 142-289 (352)
283 KOG1839 Uncharacterized protei 94.1 1.9 4.1E-05 40.0 13.1 117 92-208 1010-1130(1236)
284 KOG3824 Huntingtin interacting 94.1 0.2 4.3E-06 39.2 6.2 59 143-207 122-180 (472)
285 PF08631 SPO22: Meiosis protei 94.1 2.1 4.6E-05 33.2 14.8 110 94-207 32-151 (278)
286 PF07721 TPR_4: Tetratricopept 94.1 0.085 1.9E-06 24.9 2.8 23 139-161 3-25 (26)
287 KOG1070 rRNA processing protei 94.1 2.1 4.6E-05 40.2 13.2 100 100-205 1533-1662(1710)
288 PF04190 DUF410: Protein of un 94.0 2.2 4.7E-05 32.9 12.8 102 99-201 12-114 (260)
289 KOG3824 Huntingtin interacting 93.9 0.16 3.5E-06 39.7 5.3 81 93-185 112-192 (472)
290 PF09613 HrpB1_HrpK: Bacterial 93.9 1.6 3.4E-05 30.9 10.1 87 96-194 9-95 (160)
291 KOG1463 26S proteasome regulat 93.9 2.7 5.8E-05 33.5 12.7 96 110-205 101-196 (411)
292 KOG0376 Serine-threonine phosp 93.8 0.061 1.3E-06 44.2 3.0 98 61-186 18-115 (476)
293 KOG0545 Aryl-hydrocarbon recep 93.6 0.32 7E-06 36.8 6.3 73 136-208 177-261 (329)
294 KOG3783 Uncharacterized conser 93.5 1.3 2.9E-05 37.2 10.2 80 128-207 440-521 (546)
295 COG4976 Predicted methyltransf 93.5 0.15 3.2E-06 38.2 4.3 58 147-210 5-62 (287)
296 KOG2581 26S proteasome regulat 93.4 0.57 1.2E-05 38.0 7.7 75 92-168 204-278 (493)
297 PF10952 DUF2753: Protein of u 93.4 1.2 2.6E-05 29.9 8.0 69 100-168 4-81 (140)
298 COG5187 RPN7 26S proteasome re 93.4 1.6 3.5E-05 34.0 9.9 90 101-190 79-168 (412)
299 KOG3616 Selective LIM binding 93.4 2 4.4E-05 37.9 11.3 81 120-200 748-847 (1636)
300 COG5159 RPN6 26S proteasome re 93.1 3.4 7.3E-05 32.3 14.4 67 139-205 127-193 (421)
301 PF11207 DUF2989: Protein of u 93.0 1.4 3E-05 32.4 8.6 61 136-199 140-200 (203)
302 KOG0686 COP9 signalosome, subu 92.9 4.4 9.6E-05 33.1 14.3 100 99-203 152-255 (466)
303 KOG1915 Cell cycle control pro 92.7 1.1 2.3E-05 37.4 8.5 90 109-208 449-538 (677)
304 KOG2610 Uncharacterized conser 92.7 0.98 2.1E-05 35.9 7.9 106 90-203 130-235 (491)
305 KOG3364 Membrane protein invol 92.4 2.5 5.5E-05 29.0 9.4 67 97-167 32-101 (149)
306 PF07720 TPR_3: Tetratricopept 92.2 0.78 1.7E-05 23.6 4.8 20 180-199 4-23 (36)
307 KOG1464 COP9 signalosome, subu 92.2 2.1 4.6E-05 33.1 9.0 109 99-207 67-175 (440)
308 cd02680 MIT_calpain7_2 MIT: do 92.2 0.46 1E-05 29.0 4.5 28 142-169 11-38 (75)
309 KOG2908 26S proteasome regulat 92.1 5.1 0.00011 31.9 12.5 99 106-204 84-184 (380)
310 cd02681 MIT_calpain7_1 MIT: do 92.0 0.58 1.3E-05 28.6 4.9 33 137-169 6-38 (76)
311 COG2909 MalT ATP-dependent tra 91.9 9.2 0.0002 34.4 15.3 113 95-207 495-648 (894)
312 KOG1070 rRNA processing protei 91.9 6.3 0.00014 37.4 12.9 70 96-169 1563-1632(1710)
313 PF10255 Paf67: RNA polymerase 91.9 0.75 1.6E-05 37.6 6.8 72 99-171 124-198 (404)
314 PF13281 DUF4071: Domain of un 91.8 3.5 7.7E-05 33.5 10.4 102 99-207 143-256 (374)
315 COG5091 SGT1 Suppressor of G2 91.8 0.59 1.3E-05 35.8 5.6 61 109-169 51-111 (368)
316 TIGR03504 FimV_Cterm FimV C-te 91.7 0.45 9.8E-06 25.7 3.7 25 181-205 3-27 (44)
317 KOG1915 Cell cycle control pro 91.6 2.5 5.4E-05 35.3 9.3 106 95-206 363-500 (677)
318 KOG1463 26S proteasome regulat 91.5 0.77 1.7E-05 36.4 6.2 107 101-207 132-239 (411)
319 KOG1308 Hsp70-interacting prot 91.5 0.16 3.6E-06 40.1 2.5 66 96-167 147-212 (377)
320 PF11207 DUF2989: Protein of u 91.4 0.58 1.3E-05 34.3 5.2 58 97-157 141-198 (203)
321 PF05053 Menin: Menin; InterP 91.3 1.7 3.7E-05 36.8 8.3 83 99-182 279-363 (618)
322 PF10255 Paf67: RNA polymerase 91.2 0.43 9.4E-06 39.0 4.7 68 139-207 124-194 (404)
323 PF07079 DUF1347: Protein of u 91.0 2.2 4.8E-05 35.3 8.5 82 95-188 460-541 (549)
324 PF10952 DUF2753: Protein of u 91.0 3.4 7.4E-05 27.8 9.2 67 140-206 4-79 (140)
325 COG4649 Uncharacterized protei 90.9 4.7 0.0001 29.1 9.5 101 97-205 94-195 (221)
326 PRK10941 hypothetical protein; 90.7 5.9 0.00013 30.7 10.4 65 97-167 181-245 (269)
327 COG5091 SGT1 Suppressor of G2 90.6 0.49 1.1E-05 36.2 4.2 58 152-209 54-111 (368)
328 KOG3783 Uncharacterized conser 90.6 8.2 0.00018 32.7 11.5 77 91-167 443-521 (546)
329 KOG2053 Mitochondrial inherita 90.3 6.6 0.00014 35.3 11.2 84 101-197 47-130 (932)
330 PF10373 EST1_DNA_bind: Est1 D 90.3 0.84 1.8E-05 35.1 5.6 62 116-189 1-62 (278)
331 COG5159 RPN6 26S proteasome re 90.1 2.5 5.5E-05 32.9 7.7 107 101-207 129-236 (421)
332 cd02683 MIT_1 MIT: domain cont 90.0 1.2 2.6E-05 27.3 5.0 32 138-169 7-38 (77)
333 PF07720 TPR_3: Tetratricopept 89.8 1.1 2.3E-05 23.1 3.9 24 138-161 2-25 (36)
334 KOG2047 mRNA splicing factor [ 89.7 2.7 5.8E-05 36.4 8.2 101 105-207 355-455 (835)
335 KOG4322 Anaphase-promoting com 89.6 11 0.00023 31.2 14.1 116 92-207 268-383 (482)
336 TIGR03504 FimV_Cterm FimV C-te 89.4 0.99 2.1E-05 24.4 3.8 25 141-165 3-27 (44)
337 KOG0546 HSP90 co-chaperone CPR 89.1 0.27 6E-06 39.0 2.0 105 99-209 224-341 (372)
338 PF12739 TRAPPC-Trs85: ER-Golg 89.1 12 0.00025 31.0 12.6 107 100-206 211-329 (414)
339 PF04212 MIT: MIT (microtubule 88.2 1.9 4.2E-05 25.6 4.9 29 137-165 5-33 (69)
340 COG2178 Predicted RNA-binding 88.1 8.5 0.00018 28.2 8.8 66 97-162 29-94 (204)
341 COG3629 DnrI DNA-binding trans 87.9 6.1 0.00013 30.7 8.6 66 136-207 152-217 (280)
342 cd02679 MIT_spastin MIT: domai 87.9 1.3 2.9E-05 27.3 4.1 25 183-207 14-38 (79)
343 PF04184 ST7: ST7 protein; In 87.5 16 0.00035 30.8 14.2 108 92-208 254-377 (539)
344 PF02259 FAT: FAT domain; Int 87.5 13 0.00027 29.5 12.6 86 99-190 186-305 (352)
345 COG3947 Response regulator con 86.8 6.4 0.00014 30.9 8.0 63 139-207 281-343 (361)
346 cd02682 MIT_AAA_Arch MIT: doma 86.8 2.4 5.3E-05 25.8 4.7 31 136-166 5-35 (75)
347 cd02684 MIT_2 MIT: domain cont 86.5 2.8 6.2E-05 25.5 5.0 30 140-169 9-38 (75)
348 COG0790 FOG: TPR repeat, SEL1 86.3 14 0.00029 28.7 11.5 91 99-206 150-266 (292)
349 KOG0687 26S proteasome regulat 86.2 15 0.00034 29.3 10.9 77 113-189 80-156 (393)
350 cd02678 MIT_VPS4 MIT: domain c 86.2 3 6.5E-05 25.3 5.0 31 139-169 8-38 (75)
351 TIGR02561 HrpB1_HrpK type III 86.1 9.5 0.00021 26.7 8.8 84 99-194 12-95 (153)
352 KOG4507 Uncharacterized conser 86.1 2.7 5.8E-05 36.1 6.1 66 96-167 641-706 (886)
353 PF05053 Menin: Menin; InterP 86.1 16 0.00034 31.3 10.5 86 122-208 262-349 (618)
354 PF04212 MIT: MIT (microtubule 85.3 4.5 9.8E-05 23.9 5.5 34 96-129 4-37 (69)
355 KOG1464 COP9 signalosome, subu 85.1 16 0.00035 28.5 10.3 96 110-207 40-135 (440)
356 PF08626 TRAPPC9-Trs120: Trans 85.0 2.8 6.2E-05 39.5 6.5 56 95-150 240-295 (1185)
357 KOG4014 Uncharacterized conser 84.8 2.5 5.5E-05 30.7 4.7 88 110-205 40-140 (248)
358 KOG2041 WD40 repeat protein [G 84.7 7.3 0.00016 34.3 8.1 32 93-124 792-823 (1189)
359 PF15015 NYD-SP12_N: Spermatog 83.7 24 0.00052 29.3 11.2 99 63-167 192-292 (569)
360 PF14561 TPR_20: Tetratricopep 83.6 6.7 0.00015 24.8 5.9 65 132-200 17-81 (90)
361 COG2912 Uncharacterized conser 82.8 8.7 0.00019 29.7 7.2 72 133-210 177-248 (269)
362 PF13281 DUF4071: Domain of un 82.6 12 0.00026 30.5 8.3 90 112-208 241-336 (374)
363 smart00101 14_3_3 14-3-3 homol 82.0 21 0.00045 27.3 9.7 74 94-167 115-201 (244)
364 PF14561 TPR_20: Tetratricopep 82.0 10 0.00023 23.9 7.3 38 92-129 17-54 (90)
365 KOG4563 Cell cycle-regulated h 81.8 10 0.00022 30.6 7.4 68 93-160 37-106 (400)
366 COG3014 Uncharacterized protei 80.9 19 0.00041 29.0 8.5 28 178-205 126-153 (449)
367 cd02683 MIT_1 MIT: domain cont 80.6 7.1 0.00015 23.9 5.0 34 96-129 5-38 (77)
368 cd02682 MIT_AAA_Arch MIT: doma 80.6 11 0.00023 23.1 7.4 34 96-129 5-38 (75)
369 PF01535 PPR: PPR repeat; Int 80.6 3.8 8.2E-05 19.3 3.3 25 180-204 3-27 (31)
370 COG4976 Predicted methyltransf 80.1 4.6 0.0001 30.5 4.7 56 106-167 4-59 (287)
371 PF12854 PPR_1: PPR repeat 80.0 5.8 0.00013 19.8 4.4 27 176-202 6-32 (34)
372 COG3898 Uncharacterized membra 79.6 34 0.00073 28.3 16.9 95 99-205 122-216 (531)
373 KOG2908 26S proteasome regulat 79.4 31 0.00067 27.7 11.6 60 147-206 85-144 (380)
374 PF11846 DUF3366: Domain of un 78.6 22 0.00048 25.8 8.1 34 175-208 142-175 (193)
375 PF00244 14-3-3: 14-3-3 protei 78.6 15 0.00032 27.9 7.3 53 154-206 143-198 (236)
376 smart00671 SEL1 Sel1-like repe 78.4 5.6 0.00012 19.5 3.6 28 178-205 2-33 (36)
377 cd02681 MIT_calpain7_1 MIT: do 78.4 13 0.00028 22.7 8.3 34 96-129 5-38 (76)
378 smart00745 MIT Microtubule Int 78.0 7.8 0.00017 23.4 4.7 31 136-166 7-37 (77)
379 PHA02537 M terminase endonucle 77.1 29 0.00063 26.2 8.5 100 108-209 94-210 (230)
380 COG3118 Thioredoxin domain-con 77.0 15 0.00032 28.9 6.8 58 139-202 136-193 (304)
381 cd02679 MIT_spastin MIT: domai 76.9 15 0.00032 22.7 6.4 28 142-169 13-40 (79)
382 PF13041 PPR_2: PPR repeat fam 76.6 8.5 0.00018 20.9 4.3 28 178-205 4-31 (50)
383 cd02677 MIT_SNX15 MIT: domain 76.3 6.8 0.00015 23.9 4.0 24 142-165 11-34 (75)
384 PF00244 14-3-3: 14-3-3 protei 76.2 26 0.00056 26.6 8.0 75 95-169 114-201 (236)
385 PF04053 Coatomer_WDAD: Coatom 75.8 29 0.00062 29.1 8.8 76 120-199 334-411 (443)
386 KOG0686 COP9 signalosome, subu 75.2 46 0.001 27.5 10.2 92 112-206 125-216 (466)
387 PF08626 TRAPPC9-Trs120: Trans 75.2 7.5 0.00016 36.8 5.8 56 136-191 241-296 (1185)
388 smart00745 MIT Microtubule Int 75.1 16 0.00034 22.1 5.9 34 96-129 7-40 (77)
389 TIGR00756 PPR pentatricopeptid 74.9 7.8 0.00017 18.5 3.9 26 180-205 3-28 (35)
390 cd02656 MIT MIT: domain contai 74.9 11 0.00024 22.7 4.8 31 136-166 5-35 (75)
391 COG2178 Predicted RNA-binding 74.0 26 0.00055 25.8 7.0 74 121-201 20-93 (204)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 73.9 24 0.00053 23.8 8.7 84 111-204 40-126 (126)
393 PF08238 Sel1: Sel1 repeat; I 73.3 10 0.00022 19.0 4.1 12 152-163 23-34 (39)
394 cd02678 MIT_VPS4 MIT: domain c 73.2 16 0.00034 22.1 5.1 34 96-129 5-38 (75)
395 KOG4151 Myosin assembly protei 72.9 7.8 0.00017 34.2 4.9 94 100-201 56-151 (748)
396 PF04910 Tcf25: Transcriptiona 72.4 51 0.0011 26.8 10.6 30 100-129 43-72 (360)
397 KOG4322 Anaphase-promoting com 72.4 56 0.0012 27.2 10.5 78 92-169 308-385 (482)
398 cd02684 MIT_2 MIT: domain cont 72.1 17 0.00038 22.0 5.1 34 96-129 5-38 (75)
399 PF07079 DUF1347: Protein of u 71.9 60 0.0013 27.4 12.6 50 146-202 471-520 (549)
400 cd02656 MIT MIT: domain contai 70.5 20 0.00043 21.5 5.2 33 97-129 6-38 (75)
401 PRK13184 pknD serine/threonine 70.3 33 0.00072 31.7 8.4 70 99-168 514-583 (932)
402 PF13812 PPR_3: Pentatricopept 69.1 11 0.00025 18.0 4.2 27 179-205 3-29 (34)
403 COG3914 Spy Predicted O-linked 69.1 71 0.0015 27.7 9.5 99 103-208 73-173 (620)
404 KOG1497 COP9 signalosome, subu 67.8 37 0.0008 27.1 7.1 67 136-203 102-170 (399)
405 COG3629 DnrI DNA-binding trans 67.1 59 0.0013 25.4 8.6 65 96-166 152-216 (280)
406 KOG2034 Vacuolar sorting prote 66.4 15 0.00032 33.2 5.2 28 136-163 388-415 (911)
407 KOG2709 Uncharacterized conser 66.3 29 0.00062 28.8 6.4 34 96-129 21-54 (560)
408 PF09670 Cas_Cas02710: CRISPR- 65.2 76 0.0016 26.0 15.0 105 99-207 133-271 (379)
409 cd02677 MIT_SNX15 MIT: domain 62.9 31 0.00068 20.9 4.9 34 96-129 5-38 (75)
410 KOG0985 Vesicle coat protein c 62.6 93 0.002 29.3 9.3 61 96-167 1103-1163(1666)
411 KOG2114 Vacuolar assembly/sort 61.6 24 0.00053 31.8 5.6 49 118-166 348-397 (933)
412 COG3898 Uncharacterized membra 61.6 94 0.002 25.8 10.2 65 136-207 328-393 (531)
413 KOG0890 Protein kinase of the 61.3 1.7E+02 0.0037 30.2 11.4 87 114-208 1646-1733(2382)
414 KOG2041 WD40 repeat protein [G 61.1 50 0.0011 29.5 7.3 97 106-202 756-877 (1189)
415 KOG2582 COP9 signalosome, subu 61.0 25 0.00055 28.5 5.2 105 100-206 105-212 (422)
416 COG1747 Uncharacterized N-term 60.4 1.1E+02 0.0024 26.4 11.0 93 100-207 69-161 (711)
417 TIGR01716 RGG_Cterm transcript 59.6 68 0.0015 23.6 8.8 96 112-207 99-198 (220)
418 cd02680 MIT_calpain7_2 MIT: do 59.5 38 0.00082 20.6 7.3 38 96-133 5-42 (75)
419 TIGR01716 RGG_Cterm transcript 57.2 75 0.0016 23.4 9.0 76 97-172 128-203 (220)
420 PF04053 Coatomer_WDAD: Coatom 57.2 1.2E+02 0.0026 25.6 10.8 42 99-154 349-390 (443)
421 PF12739 TRAPPC-Trs85: ER-Golg 56.8 44 0.00096 27.7 6.3 69 139-207 210-285 (414)
422 COG3947 Response regulator con 56.7 99 0.0022 24.6 8.7 62 101-168 283-344 (361)
423 PF14858 DUF4486: Domain of un 56.2 1.1E+02 0.0024 26.4 8.4 68 140-207 154-227 (542)
424 PF04781 DUF627: Protein of un 55.0 59 0.0013 21.5 6.8 45 143-190 2-46 (111)
425 PF13041 PPR_2: PPR repeat fam 54.8 33 0.00071 18.4 5.7 28 138-165 4-31 (50)
426 KOG2709 Uncharacterized conser 54.0 1E+02 0.0023 25.7 7.6 34 136-169 21-54 (560)
427 PF07219 HemY_N: HemY protein 53.5 60 0.0013 21.1 6.5 31 96-126 58-88 (108)
428 smart00386 HAT HAT (Half-A-TPR 53.1 21 0.00046 16.6 2.6 15 192-206 2-16 (33)
429 COG5290 IkappaB kinase complex 52.0 97 0.0021 28.3 7.6 89 106-204 873-962 (1243)
430 KOG4014 Uncharacterized conser 51.9 89 0.0019 23.0 6.3 94 99-208 107-235 (248)
431 KOG0985 Vesicle coat protein c 50.9 2E+02 0.0044 27.3 9.5 60 137-207 1104-1163(1666)
432 PRK04778 septation ring format 50.0 1.5E+02 0.0032 25.9 8.6 69 141-209 483-551 (569)
433 KOG0890 Protein kinase of the 49.3 3.3E+02 0.0071 28.4 13.2 108 93-208 1666-1786(2382)
434 PRK11677 hypothetical protein; 48.9 86 0.0019 21.6 5.9 16 46-61 30-45 (134)
435 KOG4563 Cell cycle-regulated h 48.7 1E+02 0.0022 25.2 6.8 64 137-200 41-106 (400)
436 PF12273 RCR: Chitin synthesis 47.8 22 0.00048 24.1 2.8 13 17-29 2-14 (130)
437 KOG0546 HSP90 co-chaperone CPR 47.7 25 0.00054 28.4 3.3 63 99-167 277-339 (372)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 47.4 59 0.0013 21.9 4.8 46 115-164 81-126 (126)
439 TIGR03362 VI_chp_7 type VI sec 46.6 1.2E+02 0.0025 24.1 6.9 62 144-208 220-281 (301)
440 PF06295 DUF1043: Protein of u 45.9 93 0.002 21.1 6.2 12 48-59 28-39 (128)
441 KOG2561 Adaptor protein NUB1, 45.4 1.9E+02 0.0041 24.5 9.8 109 99-207 165-297 (568)
442 COG4649 Uncharacterized protei 45.3 1.2E+02 0.0026 22.2 8.8 83 109-198 70-153 (221)
443 PF02064 MAS20: MAS20 protein 45.0 43 0.00093 22.5 3.7 31 99-129 65-95 (121)
444 KOG1538 Uncharacterized conser 44.8 2.3E+02 0.0051 25.4 8.7 97 103-203 709-830 (1081)
445 PF03745 DUF309: Domain of unk 44.2 64 0.0014 18.7 4.6 58 102-159 4-61 (62)
446 PF08969 USP8_dimer: USP8 dime 43.9 92 0.002 20.5 5.3 35 96-130 37-71 (115)
447 PF02064 MAS20: MAS20 protein 43.8 54 0.0012 22.1 4.0 26 141-166 67-92 (121)
448 PF04910 Tcf25: Transcriptiona 43.6 1.8E+02 0.0039 23.7 14.0 99 100-202 50-164 (360)
449 PF15469 Sec5: Exocyst complex 42.2 1.3E+02 0.0028 21.6 8.1 24 107-130 96-119 (182)
450 smart00101 14_3_3 14-3-3 homol 40.9 1.6E+02 0.0036 22.5 7.8 53 153-205 144-199 (244)
451 KOG2561 Adaptor protein NUB1, 40.4 88 0.0019 26.3 5.4 62 100-161 270-339 (568)
452 PF08969 USP8_dimer: USP8 dime 39.9 1E+02 0.0022 20.2 5.0 39 136-174 37-75 (115)
453 cd08977 SusD starch binding ou 39.5 1.3E+02 0.0027 24.2 6.4 33 133-165 172-209 (359)
454 PF09613 HrpB1_HrpK: Bacterial 39.1 1.4E+02 0.0031 21.2 8.8 64 136-205 9-72 (160)
455 KOG3677 RNA polymerase I-assoc 38.6 37 0.00081 28.1 3.1 26 181-206 276-301 (525)
456 KOG2114 Vacuolar assembly/sort 38.5 1.2E+02 0.0027 27.6 6.3 25 99-123 370-394 (933)
457 KOG1914 mRNA cleavage and poly 38.2 2.7E+02 0.0059 24.3 9.6 89 107-204 411-499 (656)
458 PRK15180 Vi polysaccharide bio 37.5 66 0.0014 27.4 4.4 18 189-206 403-420 (831)
459 cd09247 BRO1_Alix_like_2 Prote 37.1 2.2E+02 0.0047 23.0 7.3 55 115-169 214-285 (346)
460 PF09670 Cas_Cas02710: CRISPR- 37.0 2.4E+02 0.0051 23.2 9.2 65 138-206 132-198 (379)
461 cd08977 SusD starch binding ou 36.8 1.3E+02 0.0029 24.1 6.1 32 174-205 173-209 (359)
462 cd09239 BRO1_HD-PTP_like Prote 36.3 2.4E+02 0.0051 23.0 9.9 29 178-206 253-281 (361)
463 PF05131 Pep3_Vps18: Pep3/Vps1 36.1 1.1E+02 0.0023 21.4 4.7 19 144-162 110-128 (147)
464 COG3014 Uncharacterized protei 35.5 2.5E+02 0.0054 23.0 11.2 66 100-165 61-153 (449)
465 PF13314 DUF4083: Domain of un 35.1 90 0.002 17.9 3.4 15 45-59 39-53 (58)
466 COG2912 Uncharacterized conser 34.2 2.3E+02 0.0049 22.2 7.8 61 101-167 185-245 (269)
467 KOG2034 Vacuolar sorting prote 34.0 1.1E+02 0.0023 28.1 5.3 19 103-121 364-382 (911)
468 PF12753 Nro1: Nuclear pore co 33.9 58 0.0013 26.8 3.5 36 156-192 330-365 (404)
469 COG3105 Uncharacterized protei 33.8 1.6E+02 0.0034 20.2 6.0 10 32-41 18-27 (138)
470 KOG0276 Vesicle coat complex C 33.7 3.4E+02 0.0075 24.1 9.4 65 139-203 668-747 (794)
471 KOG3024 Uncharacterized conser 32.6 2.5E+02 0.0054 22.2 12.0 102 101-203 50-153 (312)
472 cd00215 PTS_IIA_lac PTS_IIA, P 31.9 1.4E+02 0.0031 19.1 4.7 27 137-163 15-41 (97)
473 PF03635 Vps35: Vacuolar prote 31.5 3.3E+02 0.0071 24.9 8.0 134 66-210 611-761 (762)
474 KOG1310 WD40 repeat protein [G 31.5 3.4E+02 0.0075 23.7 7.5 48 111-164 425-472 (758)
475 smart00770 Zn_dep_PLPC Zinc de 31.2 2E+02 0.0043 22.0 5.8 44 93-136 110-153 (241)
476 PF11846 DUF3366: Domain of un 30.9 1.4E+02 0.0031 21.5 5.0 55 109-167 120-174 (193)
477 TIGR00823 EIIA-LAC phosphotran 30.9 1.5E+02 0.0033 19.1 4.7 27 137-163 17-43 (99)
478 PF12921 ATP13: Mitochondrial 30.6 1.7E+02 0.0037 19.7 6.6 66 97-164 52-117 (126)
479 PRK04778 septation ring format 30.3 3.7E+02 0.0081 23.5 8.9 79 103-189 485-563 (569)
480 PF10366 Vps39_1: Vacuolar sor 30.2 77 0.0017 20.7 3.1 27 179-205 41-67 (108)
481 KOG4521 Nuclear pore complex, 29.8 4.5E+02 0.0097 25.5 8.4 27 99-125 922-948 (1480)
482 KOG1811 Predicted Zn2+-binding 29.4 1.6E+02 0.0036 26.0 5.5 62 118-183 570-631 (1141)
483 PHA02537 M terminase endonucle 29.4 2.1E+02 0.0046 21.7 5.6 27 109-135 190-216 (230)
484 PF14002 YniB: YniB-like prote 29.1 1.1E+02 0.0024 21.7 3.8 18 13-30 71-88 (166)
485 PF02255 PTS_IIA: PTS system, 29.0 1.6E+02 0.0035 18.8 4.7 28 136-163 13-40 (96)
486 PRK09591 celC cellobiose phosp 29.0 1.7E+02 0.0037 19.1 4.7 27 137-163 20-46 (104)
487 PF14863 Alkyl_sulf_dimr: Alky 29.0 2E+02 0.0043 19.9 6.4 49 139-193 72-120 (141)
488 PRK10454 PTS system N,N'-diace 28.8 1.8E+02 0.0039 19.4 4.6 27 137-163 31-57 (115)
489 PF07219 HemY_N: HemY protein 28.6 1.7E+02 0.0037 19.0 7.2 50 137-192 59-108 (108)
490 COG4499 Predicted membrane pro 28.1 3.5E+02 0.0076 22.4 11.1 124 68-199 203-335 (434)
491 PF07575 Nucleopor_Nup85: Nup8 27.9 1.4E+02 0.0029 26.0 5.0 46 119-164 407-452 (566)
492 PF12753 Nro1: Nuclear pore co 27.7 1E+02 0.0022 25.5 3.9 12 193-204 378-389 (404)
493 PF09205 DUF1955: Domain of un 27.5 2.2E+02 0.0047 19.9 8.1 29 176-204 119-147 (161)
494 PF10373 EST1_DNA_bind: Est1 D 27.2 63 0.0014 24.6 2.7 46 98-149 17-62 (278)
495 KOG1258 mRNA processing protei 26.7 4.4E+02 0.0095 23.1 12.8 106 91-207 291-396 (577)
496 KOG1953 Targeting complex (TRA 26.2 50 0.0011 30.6 2.1 50 98-147 246-295 (1235)
497 KOG2460 Signal recognition par 26.0 1E+02 0.0022 26.5 3.7 43 96-138 421-463 (593)
498 PF12606 RELT: Tumour necrosis 25.6 1E+02 0.0023 17.1 2.6 19 19-37 4-22 (50)
499 KOG0276 Vesicle coat complex C 24.7 1.8E+02 0.0039 25.8 4.9 48 148-206 648-695 (794)
500 TIGR03362 VI_chp_7 type VI sec 24.6 3.6E+02 0.0078 21.4 9.7 74 101-177 217-290 (301)
No 1
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=2.5e-13 Score=98.64 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=102.8
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 143 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l 143 (210)
..+..+.++++...+. ...++..+|.+|...|+.+.|.+.|++|+++.++ ..++++|.
T Consensus 52 ~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------~GdVLNNY 109 (250)
T COG3063 52 AQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------ccchhhhh
Confidence 3444556666665443 4556888999999999999999999999998777 78899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|...+.+|+|++|..+|++|+... .....+..+-|+|.|-...|+++.|.++|++++++.++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 999999999999999999998765 55668899999999999999999999999999987654
No 2
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=7.2e-13 Score=97.28 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHHhCC
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGK--YREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~-~~~~~--~~~A~~~~~~al~~~~~~~~ 172 (210)
....+..+|.+|...|++++|+..|++++.+.+. ....+.++|.++ ...|+ +++|...++++++..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d----- 140 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYAALATVLYYQAGQHMTPQTREMIDKALALD----- 140 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-----
Confidence 3457899999999999999999999999998765 688899999974 67777 599999999999886
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....++.++|.++...|++++|+.+|+++++..+.
T Consensus 141 -P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 141 -ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred -CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777899999999999999999999999999988764
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.46 E-value=7.6e-13 Score=108.15 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
-+.+.+++|++|..+|.++.|...|.+++.+.+. -+.+.+|+|.+|.++|++++|+.+|++++++. |.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~ 420 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PT 420 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------ch
Confidence 3456788899999999999999999999887665 77888899999999999999999999998886 88
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.++++.|+|.+|.++|+.+.|+.+|.+||.+.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 888899999999999999999999988887654
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.45 E-value=1.4e-12 Score=91.06 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=89.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
....|.++...|++++|+.+|.+++.+.+. ...++.++|.++...|++++|+..|++++.+. +..+..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcHH
Confidence 456799999999999999999999986444 78899999999999999999999999999875 778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
++++|.++..+|++++|+..|+++++..+.+
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999877643
No 5
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.44 E-value=1.3e-12 Score=102.36 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=108.4
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.++...+-.+..++|+++.-.|+++.|+++|++.+.++..+++....+...+.+|.+|....++++|++|+++-+.++++
T Consensus 228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+++..+...+++.+|..|..+|+.++|+.+.++.+.+.
T Consensus 308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887654
No 6
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.43 E-value=1.8e-12 Score=80.86 Aligned_cols=74 Identities=28% Similarity=0.565 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 135 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+.++.++|.+|..+|++++|+++|++++++.+..++.. ..+.++.++|.+|..+|++++|++++++++++.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4677888888888888888888888888888866665443 3578888888888888888888888888888765
No 7
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.42 E-value=4e-13 Score=105.14 Aligned_cols=134 Identities=18% Similarity=0.270 Sum_probs=120.4
Q ss_pred HHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 028333 65 AKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG 144 (210)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg 144 (210)
.+.+.|..-+..... +++.-.+..++-++|+.|+.+|+|+.|+...+.=+.+++..||....-.++.|+|
T Consensus 173 ~Av~fy~eNL~l~~~----------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg 242 (639)
T KOG1130|consen 173 NAVKFYMENLELSEK----------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG 242 (639)
T ss_pred HHHHHHHHHHHHHHH----------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 344445555555444 6777778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 145 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+|.-+|+++.|+++|++.+.++.++++....+...+.+|..|..+.++++|+.|+.+=+.+++
T Consensus 243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888875
No 8
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.39 E-value=1.3e-11 Score=76.96 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
.+.++.++|.+|..+|+|++|+.+|++++++.+..++.. ..+.+++++|.++..+|++++|+.++++++++.+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 466789999999999999999999999999988888665 4689999999999999999999999999999874
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.39 E-value=3.4e-12 Score=104.45 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
++.++|+..-..|+..+|..+|.+++.+++. .+++.+|+|.+|..+|..+.|...|++++++. +..+.
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A~~ly~~al~v~------p~~aa 389 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEATRLYLKALEVF------PEFAA 389 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC------hhhhh
Confidence 5788999999999999999999999998876 78899999999999999999999999999987 88889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++.|+|.+|..+|++++|+.+|++++.+-+
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999998765
No 10
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=2.2e-11 Score=84.49 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
.......+.+|..++..|+++.|...|+-...+.+. ....++++|.++..+|+|++|++.|.+++.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------ 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------ 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 345667899999999999999999999988886444 78899999999999999999999999998886
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+..+..+.+.|.||...|+.+.|...|+.++...
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6677899999999999999999999999999876
No 11
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=7.1e-12 Score=94.43 Aligned_cols=105 Identities=25% Similarity=0.368 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
....+..+..-|+-....++|.+|+..|.+|+.+.++ .+..|.+.+.+|.++|+|+.|+.-++.++.+.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----- 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSID----- 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----
Confidence 4556777888999999999999999999999998766 78889999999999999999999999999986
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.-..+|.+||.+|..+|++++|++.|++++++-+.
T Consensus 146 -p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 146 -PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred -hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 677899999999999999999999999999998764
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=2.2e-11 Score=83.96 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.....+.+|..+...|++++|...+++++.+.+. ...++.++|.++...|++++|..+++++++.. +.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~ 83 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD------PD 83 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CC
Confidence 3456788999999999999999999999886443 57789999999999999999999999998874 66
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....++.+|.+|...|++++|..+|+++++..+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7789999999999999999999999999987654
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=2.2e-11 Score=95.01 Aligned_cols=104 Identities=20% Similarity=0.121 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..+..++.+|.+|...|++++|+..|++++++.+. .+.+++++|.++...|++++|+..|++++++. |
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P 129 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------P 129 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C
Confidence 34567899999999999999999999999997554 57899999999999999999999999999886 6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
....++.++|.++...|++++|++.|+++++..++|
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 677899999999999999999999999999877653
No 14
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.30 E-value=1.2e-10 Score=83.53 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
......+..++.+|.++..+|++++|+..|.+++.+.+ ++...+.++.++|.++...|++++|+.++++++.+.
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--- 102 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--- 102 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 44555777899999999999999999999999998753 334456689999999999999999999999999874
Q ss_pred CCCcchHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhh
Q 028333 171 GEYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~-------~~g~~~~A~~~~~~al~~~ 207 (210)
+.....+.++|.+|. .+|+++.|..++++++..+
T Consensus 103 ---~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 103 ---PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred ---cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence 333455666666666 8899887777777766543
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=9.1e-11 Score=87.30 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
...++|.++...|++++|+.++.+++.... .......+.++|.++...|++++|..+++++++.. +....
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~ 170 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID------PQRPE 170 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCChH
Confidence 345556666666666666666666554211 11233455566666666666666666666665543 33345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.+..+|.++...|++++|..+++++++.
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666666666666654
No 16
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.29 E-value=2.1e-10 Score=82.55 Aligned_cols=94 Identities=19% Similarity=0.369 Sum_probs=79.0
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
..++...+..++.+|..+...|++++|+.+|++++.+.+. +.....++.++|.++...|++++|+.+++++++..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3445567778899999999999999999999999987654 22346789999999999999999999999999875
Q ss_pred hCCCcchHHHHHHHHHHHHHcCC
Q 028333 170 EGEYSGSTEAYGAIADCYTELGD 192 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~ 192 (210)
+.....+..+|.+|..+|+
T Consensus 103 ----p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 103 ----PKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred ----cccHHHHHHHHHHHHHcCC
Confidence 5556778888999988776
No 17
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.27 E-value=9e-11 Score=74.21 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=68.8
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 188 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 188 (210)
.+|+|+.|+.+++++++..+. ++ ....++.+|.+++..|+|++|+..+++ .+.. +....+.+.+|.|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------PSNPDIHYLLARCLL 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------HCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------CCCHHHHHHHHHHHH
Confidence 368999999999999997664 22 455777899999999999999999999 4443 445677788899999
Q ss_pred HcCCHHHHHHHHHHH
Q 028333 189 ELGDLERAARFYDKY 203 (210)
Q Consensus 189 ~~g~~~~A~~~~~~a 203 (210)
.+|++++|++.++++
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999999875
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.26 E-value=9.4e-11 Score=93.65 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=89.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
+...|...+..++|+.|+..|.+++.+.+. ...++.++|.++..+|++++|+..+++++++. +....+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHH
Confidence 556789999999999999999999997654 56789999999999999999999999999986 667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
++++|.+|..+|++++|+.+|++++++.+++
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999887653
No 19
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.26 E-value=4.8e-10 Score=86.94 Aligned_cols=132 Identities=21% Similarity=0.331 Sum_probs=107.1
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 143 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l 143 (210)
..+.+.|.++...... .++....+..+...|.+|... ++++|+.+|++++.++...|.+...+..+..+
T Consensus 52 ~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 52 EKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444555555554443 455556676777788887766 99999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 144 GASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 144 g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
|.+|... |++++|+++|++|+++.+..+.......++..+|.++..+|+|++|++.|++....
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999998 99999999999999999888766677889999999999999999999999998764
No 20
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=9.7e-10 Score=90.42 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=112.5
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAA 140 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~ 140 (210)
+..++..|++++...... .-.+.+.-+..+.++|..|+..|+|++|..++++|+++.++. ..+...+..+
T Consensus 257 ~~eAv~ly~~AL~i~e~~--------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEV--------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 455555666666654321 123445667788999999999999999999999999999883 3455667789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQISEREG--EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+++.++..++++++|..++++++++..+.. +.+..+..+.++|.+|..+|++++|.+.|++|+.+..
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997432 3335778899999999999999999999999998764
No 21
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.22 E-value=6.8e-10 Score=74.46 Aligned_cols=105 Identities=24% Similarity=0.253 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.++..|..+..+|++++|+..|.+++...+ +......+++.+|.++...|++++|+.+|++++.... +.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccH
Confidence 578899999999999999999999987543 2333466889999999999999999999999987641 2233467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++..+|.++..+|++++|..+++++++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999999988764
No 22
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.22 E-value=4e-10 Score=87.41 Aligned_cols=112 Identities=24% Similarity=0.324 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+..+...|..|...+++++|...|.++.+...+.+++...+.++...+.+|... ++++|+.++++++++..+.++....
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 445567889999999999999999999999999999999999999999998777 9999999999999999999888888
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~ 209 (210)
+.++.++|.+|... |++++|+++|++|.++++.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999998764
No 23
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=1.2e-10 Score=70.65 Aligned_cols=66 Identities=30% Similarity=0.461 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE 208 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~ 208 (210)
+..+..+|.++...|++++|+.+|++++++. +..+.+++++|.+|..+| ++++|+.++++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678899999999999999999999999885 777889999999999999 79999999999998753
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.21 E-value=2.2e-10 Score=98.08 Aligned_cols=94 Identities=10% Similarity=0.171 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
+.+|.+++..|++++|+.+|++++.+.+. ...++.++|.++..+|++++|+..|+++++.. +....++
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~ 470 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPDVY 470 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHH
Confidence 33444444444444444444444443221 22233344444444444444444444444332 3334444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 181 GAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
..+|.++..+|++++|+..|++++++
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44555555555555555555555444
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.21 E-value=3e-10 Score=97.29 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+.++..+|.++..+|++++|+..|++++.+.+. ...++.++|.++...|++++|+.+|+++++.. +.
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~ 397 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLELGDPDKAEEDFDKALKLN------SE 397 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC
Confidence 3445566666666666666666666666664332 34455555666666666666666666655542 33
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...+++++|.++...|++++|+.+|++++++.+
T Consensus 398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 445555555555555555555555555555433
No 26
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.19 E-value=2.4e-10 Score=72.54 Aligned_cols=98 Identities=27% Similarity=0.405 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+++.+|.++...|++++|+..++++++..+. ...++..+|.++...+++++|+.+++++++.. +....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELD------PDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------Ccchh
Confidence 4678899999999999999999999886543 34678999999999999999999999998765 34447
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++..+|.++...|++++|..+++++++..+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 899999999999999999999999987654
No 27
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.19 E-value=2.4e-10 Score=88.40 Aligned_cols=135 Identities=24% Similarity=0.291 Sum_probs=118.7
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-Ch---HHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DP---IEEKK 138 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~---~~~~~ 138 (210)
+++.++.+++++.++.. .+|...+..++..+|..|-...|+++|+.+..+|.++.+.++ +. .....
T Consensus 138 fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 35566667777777665 677777888899999999999999999999999999999876 22 23456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+++.++.++..+|..-.|.++.+++.+++-..+|....+.+...+|++|...|+.+.|..-|++|....
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999998764
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.1e-10 Score=90.17 Aligned_cols=98 Identities=20% Similarity=0.387 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++.-+|.-|..+++...|+..|++|++++++ .-++++++|.+|-.++-..=|+-||++|.+.. |..
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k------PnD 431 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWYGLGQAYEIMKMHFYALYYFQKALELK------PND 431 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC------CCc
Confidence 344555677777777777777777777776655 55566666666666666666666666665553 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
...+..+|.||.++++.++|+++|.+|+..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 556666666666666666666666666543
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.5e-10 Score=93.78 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
..+...+|.+.+..+.|++|..+|++++...+....... -...+.|+|.++++++.+++|+.++++++... +.
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~------~k 487 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS------PK 487 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC------CC
Confidence 346788999999999999999999999988877665543 34478899999999999999999999999886 77
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+.++..+|.+|..+|+++.|+++|.+++.+.+.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 7899999999999999999999999999987664
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=5.1e-10 Score=81.61 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
-+.+...+|..|+..|++..|...+++|++..++ ...++..++.+|...|+.+.|-+.|++|+.+. +.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------p~ 101 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLA------PN 101 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC------CC
Confidence 4556788999999999999999999999997665 67789999999999999999999999999987 77
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
..++++|-|.-++.+|++++|..+|++|+.-
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 8899999999999999999999999999863
No 31
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=1.4e-09 Score=89.42 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-- 170 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-- 170 (210)
....++..+|..|..+|+|++|+..++.++++..+. + +.........++|.+|..++++.+|+..|++|+.+.+..
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 345566779999999999999999999999986543 2 344456667789999999999999999999999999864
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+++..+.++.+||..|...|++++|..++++|+++.+
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999875
No 32
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.14 E-value=4e-09 Score=73.70 Aligned_cols=100 Identities=26% Similarity=0.286 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
....+.+.+|.+++..|++++|...|++++... .++.....+...++.++...|++++|+..++.. .+..
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~ 115 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEA 115 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcc
Confidence 345578889999999999999999999998843 456667788999999999999999999999663 1335
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
..+..+..+|.+|...|++++|+..|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 567788999999999999999999999885
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=1.9e-09 Score=80.18 Aligned_cols=103 Identities=22% Similarity=0.352 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
...+..+|.++..+|++++|+..+++++.+.+. ...++.++|.++...|++++|+.++++++... ..+..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 134 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQP 134 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccc
Confidence 445677888888888888888888888876443 34577888888888888888888888887642 22345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+.++|.++...|++++|..+++++++..+.
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 567888899999999999999999888876543
No 34
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.10 E-value=3.9e-09 Score=80.60 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=90.4
Q ss_pred HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 98 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 98 ~~~~~~g~~~-~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
...+..|... +..|+|++|+..|++.+...+. ......+++.+|.+|+..|++++|+..|+++++.. .+.+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence 3457777765 5679999999999999997765 44456789999999999999999999999997664 355678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++++.+|.+|..+|++++|...|++.++.+++
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 899999999999999999999999999987764
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=2e-10 Score=94.55 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+++++|.+|.++++++.|.-+|++|+++. |........+|.++..+|+.++|+..|++|+.+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEIN------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCC------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 44555555555555555555555554443 333444444555555555555555555555443
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-09 Score=86.57 Aligned_cols=105 Identities=26% Similarity=0.347 Sum_probs=92.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+-++.+..+++.+|+.|-.++...=|+-||++|...-+. ....+..+|.||.+.++.++|+.+|++++...
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--- 462 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWVALGECYEKLNRLEEAIKCYKRAILLG--- 462 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---
Confidence 334456778999999999999999999999999996444 67788999999999999999999999998875
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.....++..+|..|.++++..+|..+|++.++..
T Consensus 463 ---dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 463 ---DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred ---ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999854
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=1.1e-09 Score=66.38 Aligned_cols=65 Identities=28% Similarity=0.437 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~ 167 (210)
+..+..+|.+++..|+|++|+.+|++++++.+. .+.+++++|.++..+| ++++|+.++++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 456889999999999999999999999998655 7889999999999999 7999999999999874
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.07 E-value=2.3e-09 Score=95.17 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
...+.++|.++...|++++|+..|++++.+.+. ...++.++|.++...|++++|+..++++++.. |..
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------P~~ 676 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGL------PDD 676 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCC
Confidence 346789999999999999999999999997655 66799999999999999999999999999886 777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.+++++|.++..+|++++|+.+|+++++..++
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999987654
No 39
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=4.7e-09 Score=79.43 Aligned_cols=121 Identities=16% Similarity=0.234 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 028333 46 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 125 (210)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 125 (210)
+-++++.+=...-..-.++.+++.|.+++.+.+. .+.-+.+.|.+|.++|+|+.|++-++.++.
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~ 143 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCESALS 143 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3345555555555666688899999999988765 455678899999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q 028333 126 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 194 (210)
Q Consensus 126 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 194 (210)
+-++ ...+|..||.+|..+|++++|++.|++++++. |.+.....+|..+-.++++..
T Consensus 144 iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLeld------P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 144 IDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALELD------PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccC------CCcHHHHHHHHHHHHHhcCCC
Confidence 7555 89999999999999999999999999999986 666677777777777766654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=7.8e-10 Score=91.11 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
+.....+++.+|.+|.++++++.|.-+|++|+++.++ .......+|..+.+.|+.++|+.++++|+.+.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld----- 553 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD----- 553 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----
Confidence 3445667999999999999999999999999998766 67778899999999999999999999998775
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+..+.+.+..|.++..++++++|+..+++..++.+.
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 566677888888888888888888888887766554
No 41
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.6e-09 Score=83.13 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-Ch--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DP--------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.+.....-|+.|+..|+|..|...|++++....... .+ .....++.|++.|+.++++|..|+.++.+++.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 344456689999999999999999999999876421 11 112347889999999999999999999999988
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 167 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
. +.+..++++.|.++..+|+++.|+..|++++++-+.
T Consensus 287 ~------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 287 D------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred C------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 6 788899999999999999999999999999998764
No 42
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4e-10 Score=91.51 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
+..+...+|.+|+..++|++|+.+|+.||.+-+. ....++.+|.+.....+.++|+.-|++|+++. |+
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~ 496 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PG 496 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CC
Confidence 4446778999999999999999999999995443 77889999999999999999999999999986 88
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+.+|+|.+|..+|.|++|.++|-.||.+-++
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 8899999999999999999999999999987653
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=9.5e-09 Score=77.52 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISE 168 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~~ 168 (210)
..+++.+|.++..++++++|+..|+++++..+. ......+++.+|.++... |++++|+..|+++++...
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 346788999999999999999999999997764 233455788999999876 889999999999987642
Q ss_pred HhCCCcc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 169 REGEYSG-----------STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 169 ~~~~~~~-----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....... .......+|.+|...|++.+|+..|+++++..++
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD 198 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence 2110000 0012347899999999999999999999987653
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=3.9e-09 Score=89.28 Aligned_cols=99 Identities=16% Similarity=-0.011 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...++..+|.++...|++++|+..|++++++.+. .+.+++++|.++...|++++|+..+++++++. |.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------P~ 404 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKLD------PT 404 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CC
Confidence 3334445555555555555555555555554333 34455555555555555555555555555543 22
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
....+..++.++...|++++|+.++++++..
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 2233333444444455555555555555443
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.00 E-value=6.4e-09 Score=87.99 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++.+|.++...|++++|+..+++++.+.+. .......++.+++..|++++|+..++++++.. .+..
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-----~p~~ 440 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-----LQDN 440 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-----cccC
Confidence 345788999999999999999999999997654 23344556667778999999999999987652 2455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+..+.++|.+|..+|++++|...+++....
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 678999999999999999999999887654
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.98 E-value=1.1e-08 Score=77.11 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..++.+|..++..|+++.|+..+++++...+. ......+++.+|.++...|++++|+..++++++... +.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~ 105 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPD 105 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCc
Confidence 4557899999999999999999999999886543 344566889999999999999999999999987753 3344
Q ss_pred hHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTEL--------GDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~~ 209 (210)
...+++.+|.++... |++++|+..|++++...+.
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 556899999999886 8899999999999887654
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.96 E-value=3.3e-09 Score=63.52 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.+|..++..|++++|+..|+++++.. |....+++.+|.++..+|++++|+.+|+++++..+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 57888888888888888888886654 7778888888888888888888888888888877653
No 48
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=3.2e-08 Score=74.37 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=93.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
.++.|.-++..|+|..|...|.+.++-++ +....+.++++||.+++.+|+|+.|...|..+.+ ...+.+..+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP---NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence 78899999999999999999999998555 4666888999999999999999999999999855 45566778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++.+|.|...+|+.++|...|++.++.++.
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999988764
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.91 E-value=2e-08 Score=86.54 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCHHH----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 100 RLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~----A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...+|..+...|++++ |+..|++++.+.+. ...++..+|.++...|++++|+.+++++++.. +.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------P~ 316 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLATH------PD 316 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC
Confidence 4445555555555543 45555555554332 33444555555555555555555555554432 33
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
...++.++|.+|...|++++|+..|+++++
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444445555555555555554444443
No 50
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.91 E-value=1.4e-07 Score=63.31 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+.+..|.++-..|+.++|+.+|++++.... +......++..+|.++..+|++++|+..+++++... .+.+....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGL---SGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHH
Confidence 578899999999999999999999988421 234467799999999999999999999999997543 23334556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
....++.++...|++++|+.++-.++.
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677789999999999999999877653
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=4.8e-09 Score=83.65 Aligned_cols=107 Identities=22% Similarity=0.226 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
-++..+.++.+.|++-+..|++++|.+.|++++. +...-..+++|+|.++-.+|+.++|+++|-+.-.+.
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il---- 554 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL---- 554 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----
Confidence 3444566788899999999999999999999988 444567899999999999999999999999987776
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
...+.+++.++.+|..+.+..+|++++.++..+.++|
T Consensus 555 --~nn~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 555 --LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred --HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 5568899999999999999999999999999888765
No 52
>PRK15331 chaperone protein SicA; Provisional
Probab=98.91 E-value=2.4e-08 Score=69.79 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+-+.......+..|..++..|++++|...|.-..-+ .+...+.+.+||.++..+++|++|++.|-.+..+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 344456677899999999999999999998654442 22246678999999999999999999999997765
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
...+...+..|.||..+|+.++|+.+|+.+++.
T Consensus 102 ---~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 ---KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 223345889999999999999999999999874
No 53
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.90 E-value=2.9e-08 Score=90.71 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-H-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-E-------EKKAARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
..++..+|.++..+|++++|+.+|++++++.+...... . ........|.++...|++++|+..|+++++..
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~- 381 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD- 381 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 44688899999999999999999999999766532211 0 11233456889999999999999999999875
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....++..+|.+|...|++++|+.+|++++++.+.
T Consensus 382 -----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 382 -----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred -----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 566788999999999999999999999999987654
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.90 E-value=2.4e-08 Score=86.03 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...++..+|.++..+|++++|+..+++++.+.+. ...++.++|.++...|++++|+..|+++++.. +.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~ 350 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLAREK------GV 350 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cc
Confidence 3456788999999999999999999999997554 56678899999999999999999999998764 44
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....+..+|.++...|++++|+..|+++++..++
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 4566777899999999999999999999987554
No 55
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.7e-08 Score=81.57 Aligned_cols=99 Identities=16% Similarity=0.272 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.....|+.++..|+|..|+.+|.+++...+ ..+..|.|.|.||..++++..|+...++++++. +....
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P------~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~~k 427 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDP------EDARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNFIK 427 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC------chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chHHH
Confidence 445669999999999999999999998543 378899999999999999999999999999985 78889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+|.+-|.++..+.+|++|.+.|.++++..++
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999987653
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.89 E-value=7.5e-08 Score=77.87 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..+..+|.+|...|++++|...|.++++.. +....++..++.++...|++++|+..++++++..... ......
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 180 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVEIA 180 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHHHH
Confidence 345666666666777777776666666531 1234566667777777777777777777665442100 001234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+..+|.++...|++++|+.+|+++++..+
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 4566777777778888888888887776644
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=5e-08 Score=76.22 Aligned_cols=98 Identities=15% Similarity=0.061 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...+++++|.++...|++++|+..|++++++.+. ...++.++|.++...|++++|+..|+++++.. |.
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~------P~ 164 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD------PN 164 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC
Confidence 3457899999999999999999999999997655 56789999999999999999999999998874 22
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
... ......+....+++++|+..++++...
T Consensus 165 ~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 165 DPY-RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred CHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 221 111122345578899999999876644
No 58
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=1.6e-08 Score=70.57 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...+++.+|.++...|++++|+..|.+++.+.+. .+.+++++|.++...|++++|+..|+++++.. +.
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~------p~ 124 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS------YA 124 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Confidence 4556899999999999999999999999997554 67899999999999999999999999999886 67
Q ss_pred hHHHHHHHHHHHHHc
Q 028333 176 STEAYGAIADCYTEL 190 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~ 190 (210)
.+..+.+.|.+...+
T Consensus 125 ~~~~~~~~~~~~~~l 139 (144)
T PRK15359 125 DASWSEIRQNAQIMV 139 (144)
T ss_pred ChHHHHHHHHHHHHH
Confidence 777888888776544
No 59
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.85 E-value=3.2e-07 Score=74.23 Aligned_cols=94 Identities=24% Similarity=0.295 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
..+|..+...+++++|+.+|+++++..+. ...++..+|.++...|++++|+..++++++... .....++
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~ 252 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQDP-----EYLSEVL 252 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-----hhHHHHH
Confidence 44555555555555555555555543222 233444555555555555555555555543310 1112334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 181 GAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
..++.+|...|++++|...++++++
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.82 E-value=2.2e-08 Score=77.64 Aligned_cols=103 Identities=24% Similarity=0.350 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
....+...|.++...|++++|+..|++++++.+. ...+...+++++...|+++++...++...+.. +.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~ 212 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD 212 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence 4556788899999999999999999999998765 55567777888888888887777776665543 22
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.+..+..+|.+|..+|++++|+.+|+++++..++|
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccc
Confidence 23456677888888888888888888888766543
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.79 E-value=6.9e-08 Score=85.21 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++.+|.++...|++++|+..|+++++..+. ...++.++|.++...|+ ++|+.+++++++.. +..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~------~~~ 836 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKLA------PNI 836 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC------CCC
Confidence 346777888888889999999888888875443 45567777888888887 77888888887654 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...+..+|.++...|++++|..+|+++++..+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56677788888888888888888888887654
No 62
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.79 E-value=1.5e-07 Score=63.00 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
+-..|......|+.+.|++.|.+++.++++ .+.+|+|.+.++..+|+.++|++.+++++++... .......+
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacqa 117 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQA 117 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHHH
Confidence 344688888999999999999999999987 8899999999999999999999999999998721 11224467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+...|.+|..+|+-+.|..-|+.|-.+
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 899999999999999999999988654
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=1e-07 Score=81.95 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+..+.+.+...++++++|+..+++++...+. .+.+++.+|.++...|++++|++.|++++.- .+..
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~ 187 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWDEIGQSEQADACFERLSRQ------HPEF 187 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------CCCc
Confidence 335666778888888888888888888775544 6777888888888888888888888888652 2566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
..++..+|.++...|+.++|...|+++++..
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7788888888888888888888888887764
No 64
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.78 E-value=4.8e-07 Score=70.53 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc--
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-- 175 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-- 175 (210)
.+...+|..+.-++.+++++++|++|+.++...+|+.....++..+|..|...+|+++|+-+..+|.++.+..+-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 346668999999999999999999999999999999999999999999999999999999999999999987652222
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 176 --STEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 176 --~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
...+++.++..+..+|+.-.|.++++++.++.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 55678999999999999999999999998764
No 65
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.9e-07 Score=67.13 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..+-.-|+-++..|+|++|...|..|+.+++.... ......|.|.|.+..+++.++.|+.-+.++|++- +.
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------pt 166 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELN------PT 166 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------ch
Confidence 3445667899999999999999999999999987544 4467788999999999999999999999999985 66
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...++.+.|..|..+..|+.|++-|.+.++..+
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 667888999999999999999999999988765
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=1.3e-07 Score=81.33 Aligned_cols=98 Identities=11% Similarity=0.111 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...++..+|.+....|.+++|...++.++++++. ...+..+++.++.+.+++++|+..++++++.. +.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------p~ 152 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------SS 152 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------CC
Confidence 3557899999999999999999999999998876 78899999999999999999999999998886 88
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.+..++.+|.++..+|++++|...|++++.
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 899999999999999999999999999996
No 67
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-07 Score=72.34 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCC
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~ 172 (210)
++..+..+|.+|+.+++++.|...|.+|+.+.++ .+..+..+|.+++... ...++...|++++...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D----- 223 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKARALLRQALALD----- 223 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-----
Confidence 4556888999999999999999999999998776 6777888888876533 4578999999998875
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
+....+.+.+|..+++.|+|.+|...++..++..+.|
T Consensus 224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred -CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 7778899999999999999999999999999877643
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.7e-08 Score=79.62 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-chHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTE 178 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 178 (210)
.+.+|.-|..++++..|..+|..|+.+++. .+-.++.+|.+.+..+.|.+|..+|+.++...+...+.. ....
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 456788899999999999999999999887 566889999999999999999999999997666544332 2445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.+.|+|.+|.+++++++|+.+|++++...++|
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 69999999999999999999999999876653
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.75 E-value=2.1e-07 Score=82.97 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=82.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Q 028333 102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 181 (210)
Q Consensus 102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 181 (210)
.++......|++++|+..|++++.+.+ . ..++.++|.++...|++++|+..+++++... |....++.
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~ 647 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAP------S-ANAYVARATIYRQRHNVPAAVSDLRAALELE------PNNSNYQA 647 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 345555566999999999999988643 1 5678999999999999999999999998886 77789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 182 AIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 182 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
++|.++...|++++|+..|+++++..+++
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999887653
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=4.3e-08 Score=58.60 Aligned_cols=61 Identities=26% Similarity=0.440 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+.+|..++..|++++|+..|++++...+ ....+++.+|.++..+|++++|+.+|+++++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3579999999999999999999998543 388999999999999999999999999998775
No 71
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.74 E-value=1.6e-07 Score=85.93 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH------------------------------------HHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------------------------------------EKKAA 140 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~------------------------------------~~~~~ 140 (210)
..++..+|.++..+|++++|+.+|++++++.+....... ....+
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 346788999999999999999999999986543211000 01223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+|.++...|++++|+..|+++++.. |....+++.+|.+|...|++++|+..++++++..+.
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALD------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 456777888999999999999998875 666788999999999999999999999999886553
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.2e-08 Score=78.27 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..+..+-+.|+-++..|+|++|+.||..|+++++. .+..|.|++.||...|++++-++...+++++. |
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl~------P 180 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALELN------P 180 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC------c
Confidence 45667788999999999999999999999998876 57889999999999999999999999999986 7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFY 200 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~ 200 (210)
.-..++++.+..+..+|++++|+.-.
T Consensus 181 ~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 181 DYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 77899999999999999999998644
No 73
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.71 E-value=5.7e-07 Score=66.41 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
....++..|...+..|+|.+|+..|++.....+. +.....+...+|.+++..|+|+.|+..+++.++.. .+.+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---P~~~~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---PNSPK 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcc
Confidence 3456899999999999999999999999886654 55577899999999999999999999999997765 34566
Q ss_pred hHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTELGD-----------LERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~-----------~~~A~~~~~~al~~~~~ 209 (210)
...+++.+|.++..+.+ ..+|+..|+..++.+++
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 78899999999876542 35888888888887764
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=6.7e-08 Score=77.65 Aligned_cols=99 Identities=24% Similarity=0.267 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.+++..|.+++-+++|++|+.-|++++.+.+. .+.++..++.+.+++++++++...|+.+++-. |..+
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------P~~~ 462 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------PNCP 462 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCc
Confidence 36889999999999999999999999998666 78889999999999999999999999998876 7788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+|.--|.++..+++|++|.+.|++|+++-+
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999998754
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=1.7e-07 Score=74.86 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.......+|.++..+|++++|+..+++++++.+. ...++..+|.++...|++++|+.+++++++.... +...
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~ 184 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSML 184 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccch
Confidence 4556678899999999999999999999997665 3667899999999999999999999999876532 1122
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
....+..+|.++...|++++|+..|++++.
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 345678999999999999999999999864
No 76
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=7.3e-07 Score=65.51 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+..+..-|+.|...++++.|-..|.++-++..+.++.+..+..|...+.+|..- +.++|+.++++++++..+.+....-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445566788999999999999999999999999998888898999888888755 9999999999999999988877777
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~ 209 (210)
+.-+..||.+|..- .++++|+.+|+++-+.++.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 78899999999775 9999999999999887654
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=2.2e-07 Score=69.19 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+...|......|+|..|+..+.++..+.+. .+.+++.+|.+|.+.|+++.|..-|.+++++. +....
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~~~p~ 169 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALELA------PNEPS 169 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc------cCCch
Confidence 3444899999999999999999999997665 78899999999999999999999999999997 66778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
...|+|..|...|+++.|..++..+....
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999887543
No 78
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.68 E-value=3e-07 Score=81.18 Aligned_cols=105 Identities=23% Similarity=0.221 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
.......+..+|.++...|++++|...|+++++..+. ...++..+|.++...|++++|+..++++++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----- 189 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR------SLYAKLGLAQLALAENRFDEARALIDEVLTAD----- 189 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 3445567788999999999999999999999885443 45577888888888888888888888887653
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....++..+|.++...|++++|..+|+++++..+.
T Consensus 190 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 190 -PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 455677888888888888888888888888776543
No 79
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.68 E-value=2.7e-07 Score=73.89 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=81.9
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
+..+++.|.+++...+. ...+++++|.++..+|++++|+..+++++.+.+. ...+++.
T Consensus 18 ~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~ 75 (356)
T PLN03088 18 FALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLR 75 (356)
T ss_pred HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHH
Confidence 45566666666665432 2446889999999999999999999999998665 6778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 191 (210)
+|.++..+|+|++|+..|++++++. +....+...++.|...+.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLA------PGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886 566677777888866653
No 80
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.65 E-value=2.3e-06 Score=58.62 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..++..|...+..|+|++|++.|+....-.+ .......+...+|.+|+..++|++|+..+++-+++-. .++...
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~vd 84 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNVD 84 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCcc
Confidence 3578899999999999999999998776433 4555677999999999999999999999999988853 456678
Q ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhcc
Q 028333 178 EAYGAIADCYTELGD---------------LERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~---------------~~~A~~~~~~al~~~~~ 209 (210)
.+++..|.++..+.+ ..+|...|++.+..+++
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 899999999999887 88999999999888765
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=3.9e-08 Score=75.52 Aligned_cols=92 Identities=10% Similarity=0.177 Sum_probs=46.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183 (210)
Q Consensus 104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 183 (210)
|..|+..++.+-|+.||.+.+++.-. .++.+.|+|.|++..++++-++..|++++..+.+ ....+++|+|+
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNl 401 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQ------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNL 401 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCC------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhcc
Confidence 44445555555555555555554332 3445555555555555555555555555544421 12234555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 028333 184 ADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 184 g~~y~~~g~~~~A~~~~~~al 204 (210)
|.+....||+..|..+|+-|+
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred ceeEEeccchHHHHHHHHHHh
Confidence 555555555555555555444
No 82
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.63 E-value=1.4e-06 Score=66.04 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
..+..|..++..|+|++|+..|++.+...+ ++.....+...+|.+|+..++|++|+..+++.++... +++....
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P---~~~~~~~ 107 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNIDY 107 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---CCCchHH
Confidence 477889999999999999999999988655 3566777889999999999999999999999987753 5567889
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhcc
Q 028333 179 AYGAIADCYTELG---------------D---LERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g---------------~---~~~A~~~~~~al~~~~~ 209 (210)
+++.+|.++..++ | ..+|+..|++.++.+++
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence 9999999976654 1 24677888888887764
No 83
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.62 E-value=6.8e-07 Score=78.58 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+.++..+|..+...|++++|+..|++++.+.+. ...+...+|.++...|++++|+..++++++.. |..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~------P~~ 116 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSGA------PDK 116 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCC
Confidence 445788999999999999999999999997544 46677899999999999999999999998775 666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.. +..+|.++...|++++|+..++++++..++
T Consensus 117 ~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 117 AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66 999999999999999999999999988764
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.61 E-value=1.8e-06 Score=61.99 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 131 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 131 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
......+.+++++|..+...|++++|+.+|+++++.... .+....++.++|.++...|++++|+.+++++++..+.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345567788999999999999999999999999887532 2335678999999999999999999999999987553
No 85
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.60 E-value=2.9e-07 Score=74.12 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA---ARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.++..+..++++|..++.+|+|++|+..|++++++ .+....+ ++|+|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34457889999999999999999999999999994 5666644 899999999999999999999999876
No 86
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=1.8e-05 Score=56.81 Aligned_cols=102 Identities=25% Similarity=0.194 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
-..+.+.++..+...+++++|+..++.++.. .+|....+.+-.+++.+..++|.+++|+..+...- +...
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w 157 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESW 157 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccH
Confidence 3446688999999999999999999998873 34566677788899999999999999988876552 2234
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+..-...|+++...|+-++|+..|+++++..
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55667789999999999999999999999874
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.58 E-value=2.5e-07 Score=79.65 Aligned_cols=105 Identities=19% Similarity=0.153 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+++...+|.++...|++..|...|.++.+-... ...++.|+|.||..+|+|..|++.|+.+++..- ...
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~----~~~ 714 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY----KKN 714 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC
Confidence 5778888999999999999999999988774332 456889999999999999999999999988763 345
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
...++..||++++..|++.+|.++..+|+...+.|
T Consensus 715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 67889999999999999999999999999877643
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=4.6e-07 Score=62.24 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q 028333 118 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197 (210)
Q Consensus 118 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 197 (210)
..+++++...+ ........+|.++...|++++|+..+++++... +....++.++|.++..+|++++|.
T Consensus 4 ~~~~~~l~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDS------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD------PYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCCh------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666433 356788999999999999999999999998764 667899999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 028333 198 RFYDKYISRLES 209 (210)
Q Consensus 198 ~~~~~al~~~~~ 209 (210)
.+++++++..++
T Consensus 72 ~~~~~~~~~~p~ 83 (135)
T TIGR02552 72 DAYALAAALDPD 83 (135)
T ss_pred HHHHHHHhcCCC
Confidence 999999887654
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.7e-07 Score=74.88 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=87.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
....|+..+..|+|+.|+.+|.+++.+.+. ....|.|...+|..+|+|++|+.--.+.+++. |..+..
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kg 72 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKG 72 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhH
Confidence 345688899999999999999999998655 66678899999999999999999999998886 778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|.+.|..+..+|+|++|+..|.+.++..++
T Consensus 73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~ 102 (539)
T KOG0548|consen 73 YSRKGAALFGLGDYEEAILAYSEGLEKDPS 102 (539)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999987654
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=6.7e-07 Score=65.75 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-H
Q 028333 110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY-T 188 (210)
Q Consensus 110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~ 188 (210)
.++.++++..+++++...+. ....+..+|.+|...|++++|+..|++++++. +.....+..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQLR------GENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 55678888899999986554 67799999999999999999999999999986 77889999999984 6
Q ss_pred HcCC--HHHHHHHHHHHHHhhccC
Q 028333 189 ELGD--LERAARFYDKYISRLESD 210 (210)
Q Consensus 189 ~~g~--~~~A~~~~~~al~~~~~~ 210 (210)
..|+ +++|...++++++..+++
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCC
Confidence 7787 599999999999887653
No 91
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=2.5e-07 Score=71.24 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
++..+..++.++-.+++++.|.++|+.+++.-+ ...++...+|..|+.-++.+-|+.||++.+++- -.
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG------~~ 356 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP------INVEAIACIAVGYFYDNNPEMALRYYRRILQMG------AQ 356 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC------ccceeeeeeeeccccCCChHHHHHHHHHHHHhc------CC
Confidence 555678889999999999999999999998543 367778889999999999999999999998875 45
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+..+.|+|.|+.--++++.++..|++|+..+.+
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~ 390 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ 390 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC
Confidence 6789999999999999999999999999987753
No 92
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.55 E-value=1.3e-06 Score=76.79 Aligned_cols=103 Identities=15% Similarity=0.009 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...+...+|..+...|++++|+..+++++...+. ...++..+|.++...|++++|+..+++++.+. |.
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~------Pd 425 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASVLQARGWPRAAENELKKAEVLE------PR 425 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CC
Confidence 3445678899999999999999999999987654 56789999999999999999999999999886 77
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
...+++..|.++...|++++|...++++++..+++
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 77899999999999999999999999999887653
No 93
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.55 E-value=4.2e-07 Score=55.52 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+|...+++++|+.++++++.+. |.....+...|.++..+|++++|...++++++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 345666666666666666666664 44556666666666666777777766666666554
No 94
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.54 E-value=2e-06 Score=74.29 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.++..++..|+-.|+|+.+....+-++.... .....+.+++.+|.+|-.+|+|++|..||.++++... ....
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~~~ 342 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DNFV 342 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CCcc
Confidence 3577888889999999999888888877542 3556778889999999999999999999998877641 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++.+|.+|...|+++.|..+|++.++..++
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 66888999999999999999999988887664
No 95
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.54 E-value=3.1e-07 Score=71.19 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+...++..+...|+++++...+.......+. .+..+..+|.++..+|++++|+.+|+++++.. +..+.
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~ 249 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPL 249 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHHHHHHHhcccccccccccccccccccc------ccccc
Confidence 4667889999999999988877777665443 33456788999999999999999999998765 77788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+..+|.++...|+.++|...+.++....
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHHHHHHHHT-------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987654
No 96
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.3e-07 Score=71.20 Aligned_cols=104 Identities=24% Similarity=0.289 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
....+..-|+-.+..|+|..|.+.|..++.+.+. +....+..|.|.+.+...+|+..+|+..+++++.+. +.
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD------~s 319 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID------SS 319 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC------HH
Confidence 3445566799999999999999999999999887 444577889999999999999999999999999986 56
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
-..++...|.|+..+++++.|.+.|++|++.-
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999998754
No 97
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=3.5e-06 Score=66.38 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCCc
Q 028333 98 LSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 98 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~ 174 (210)
.++...|.+...++ ++++++..+.+++...++ ...++++.+.+....++. ++++++++++++.. +
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d------p 139 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD------A 139 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC------c
Confidence 35666676666666 567777777777775443 455677777777666653 56677777776654 5
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
....++...|.++...|++++|+++++++++.-
T Consensus 140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 566777777777777777777777777777654
No 98
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.2e-06 Score=67.69 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...+++|++.++..+++|..|+.+..++|.+-+. ...+++..|.++...++|+.|+..|++++++. |.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~------P~ 323 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKLE------PS 323 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC------CC
Confidence 3457799999999999999999999999996544 78899999999999999999999999999986 66
Q ss_pred hHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhh
Q 028333 176 STEAYGAIADCYTELGDLER-AARFYDKYISRL 207 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~ 207 (210)
+..+...+..|-....++.. ..+.|.++....
T Consensus 324 Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 324 NKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67778888888776665544 467777766543
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=1.8e-06 Score=60.16 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
...-+..+.+|..++..|++++|...|+-...+. +.....++++|.|+..+|++++|+..|.+|+.+.++|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4456678899999999999999999999998886 8889999999999999999999999999999877654
No 100
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.47 E-value=2.3e-06 Score=61.25 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 190 (210)
++|..+...+.+.++ .........+++++|.++...|++++|+..|++++.+.. +....+.++.++|.+|...
T Consensus 13 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 13 KTFTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred cccccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHc
Confidence 344555555544332 223344678899999999999999999999999988742 2233567899999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 028333 191 GDLERAARFYDKYISRLE 208 (210)
Q Consensus 191 g~~~~A~~~~~~al~~~~ 208 (210)
|++++|+.+|++++.+.+
T Consensus 86 g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 86 GEHTKALEYYFQALERNP 103 (168)
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999998644
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=1.1e-05 Score=72.44 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC--
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-- 173 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 173 (210)
...+...+|.++...|++++|...+.+++..++..++......++.++|.++...|++++|..++++++.+....+..
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 445667899999999999999999999999999988888778889999999999999999999999999998765432
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+.....+..+|.++...|++++|...+++++...+
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 22345577889999999999999999999887643
No 102
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-06 Score=65.86 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=97.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+.....+.-+-.-|+-|+..++|..|...|.+++. .+..|+...+..|.|.+.+....|+|.+|+.-+.+++.+.
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--- 149 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--- 149 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 44445666677789999999999999999999987 5778888899999999999999999999999999998886
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
|....++++=|.|+.++..+++|..|++..+.+.
T Consensus 150 ---P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 150 ---PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 7788999999999999999999999999887654
No 103
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=2.9e-05 Score=59.91 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
++..|..++..+....+.++|...+++|++.. +....+-..+|+++...|+|++|++.++.+++
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQAD------KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC------ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 33344444444444445555555555554433 33333444555555555555555555555544
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=5.6e-06 Score=67.95 Aligned_cols=144 Identities=13% Similarity=0.175 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 028333 42 QRRGELQRVNEQLRQINAALR-RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 120 (210)
Q Consensus 42 ~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 120 (210)
++..+.-+.+..|........ ...++...++++..- ++. ..++..+|..|...|.-.+|+.++
T Consensus 313 kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--------------P~N--leaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 313 KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--------------PTN--LEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--------------Ccc--HHHHHHHHHHHhhhhhHHHHHHHH
Confidence 444555566666766666555 344455566666543 332 335777888888877777777766
Q ss_pred HHHHHHH--------------------------------------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 121 KAALELA--------------------------------------QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 121 ~~al~l~--------------------------------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
++=+... ...+. ...+++...||.+|...|+|++|+++|+.
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 5443222 11111 12456788999999999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
|+... |.....|+.+|.++..-.+.++|+..|.+|+++-+
T Consensus 456 AL~v~------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 456 ALQVK------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HHhcC------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 98875 88889999999999999999999999999998755
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=2.4e-06 Score=63.76 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
+...++.+|.+|-+.|+++.|-.-|.+++++... .+...+|+|..+...||++.|..++..+.... ..
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~------~a 200 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP------AA 200 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC------CC
Confidence 4556888999999999999999999999999877 77789999999999999999999999985543 44
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFY 200 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~ 200 (210)
...+..|++.+....|+++.|...-
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhc
Confidence 6688999999999999999998754
No 106
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.45 E-value=1.7e-06 Score=54.43 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
....++.+|.+++.+|+|++|+..+++ ....+. .....+.+|.++..+|+|++|+..++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 344677799999999999999999998 554443 4566777899999999999999999875
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=3.5e-05 Score=53.73 Aligned_cols=102 Identities=18% Similarity=0.073 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.++...+.........++...+...+++... ..+++.....+...+|.++...|++++|...|++++... .+..
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~ 82 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPE 82 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHH
Confidence 3444556666666678999998777777665 455666678889999999999999999999999997643 3334
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
....+.+++|.++...|++++|+..++.
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5677899999999999999999999865
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=7.4e-07 Score=53.61 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=32.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 148 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 148 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...|++++|+..|++++... |....+++.+|.||...|++++|...+++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34566666666666665554 44556666666666666666666666665555433
No 109
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=2.6e-05 Score=60.20 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..+..+..+|..+....+.+.|...+.+|++..++ -..+-.-+|.++...|+|++|++.++.+++-. ..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-----~~ 246 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQN-----PE 246 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHhC-----hH
Confidence 34556778899999999999999999999997655 67778889999999999999999999998763 45
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+.+.-.+..||..+|+.++.+.++.++.+...
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 5788899999999999999999999999987654
No 110
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.39 E-value=2.7e-06 Score=51.91 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=53.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+|...++|++|+..+++++.+.+. ....+...|.++...|++++|+..++++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56889999999999999999998665 77889999999999999999999999999775
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.39 E-value=1.3e-06 Score=52.55 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=53.0
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333 108 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 185 (210)
Q Consensus 108 ~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 185 (210)
+..|+|++|+..|++++...+. ...+...+|.+|...|++++|...+++++... +.....+.-++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD------PDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG------TTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCHHHHHHHHhc
Confidence 5689999999999999997665 67788999999999999999999999997665 444555544443
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.37 E-value=3.8e-06 Score=72.03 Aligned_cols=98 Identities=17% Similarity=0.240 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.....++.++..+...|+|.+|+.++...... ........++.+|.||..+|.+++|+.+|++++... |
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------p 480 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------P 480 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------C
Confidence 34446788999999999999999999887662 233346688999999999999999999999998886 7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
...++...|+.+|..+|+.++|.+.+++.
T Consensus 481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 481 DNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 77888999999999999999998887764
No 113
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.37 E-value=1.1e-06 Score=70.76 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+....+++|+|.+|...|+|++|+..|++++++..... ....+|+|+|.+|..+|++++|+.++++|++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34677899999999999999999999999999988831 12267999999999999999999999999986
No 114
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=1.8e-05 Score=56.53 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.-.+.+|+.....|++.+|...|++++. |........+.+++++.+..+++..|...+++..+.... ...+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa----~r~p 160 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA----FRSP 160 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc----cCCC
Confidence 3467789999999999999999999987 233335667888999999999999999999998776521 2345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+.....|++|..+|++.+|...|+.+++..+
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 6788899999999999999999999988765
No 115
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=1.2e-05 Score=64.89 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
...++.++...++-.+|++...+++...+. ....+...+..+...++++.|+...+++.+.. |....+
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls------P~~f~~ 270 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVELS------PSEFET 270 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------chhHHH
Confidence 455789999999999999999999974433 47788889999999999999999999999987 888899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 028333 180 YGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
|+.|+.+|..+|++++|+..++.
T Consensus 271 W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 271 WYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999999999987764
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=3.2e-05 Score=57.75 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
....+...=-+...+|+.-+|++...+.++.+.. ..+++..++.+|...|+|++|.-++++.+-+. |.
T Consensus 119 ~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~------P~ 186 (289)
T KOG3060|consen 119 DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ------PF 186 (289)
T ss_pred hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC------CC
Confidence 3334433334455678888999988888887655 67799999999999999999999999998775 77
Q ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhc
Q 028333 176 STEAYGAIADCYTELG---DLERAARFYDKYISRLE 208 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~ 208 (210)
....+..+|.+++-+| +.+.|.++|++++++.+
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 8888999999988776 67889999999999875
No 117
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.34 E-value=1.1e-05 Score=69.43 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
++..++..|+..+..|++++|...+.+++...++ ...+|+.||.+|.++|+.++++..+-.|.-+. +.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~------p~ 205 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN------PK 205 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC------CC
Confidence 4566788899999999999999999999997666 78899999999999999999999988875553 44
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....|..++....++|++++|.-||.+|++.-+.
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 4588999999999999999999999999987654
No 118
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.33 E-value=1.5e-06 Score=67.47 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
.-..|+-|+.+|+|++|+.+|.+++.+.+. .+..+.|.+.+|+.++.+..|...+..|+.+. ..-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KA 167 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKA 167 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHH
Confidence 355799999999999999999999997654 56678899999999999999999999999886 445678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
|.+.|..-..+|...+|.+-++.++++-+
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 99999999999999999999999987644
No 119
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=6.9e-05 Score=55.76 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..+..-+++|...++|++|...+.+|.+-.+.....++.+.++-..|........+.++.++++++.....+.+....
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 45556777899999999999999999999999988889999999999999999999999999999999999998887666
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
-+.++-.-|.+. +..++++|+..|++++.+++++
T Consensus 110 AAmaleKAak~l-env~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 110 AAMALEKAAKAL-ENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhcc
Confidence 666666666655 4688999999999999988753
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.31 E-value=2.9e-05 Score=69.67 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=94.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
++....+.+..++|.+++..|+++.|...+.+++.++...+.. ......+..+|.++...|++++|...+.+++.+..
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 3444456677889999999999999999999999999876532 22344566789999999999999999999999876
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
..+ ......++..+|.++...|+++.|...++++..+.
T Consensus 605 ~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 605 NYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred ccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 443 23355678889999999999999999999997753
No 121
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.31 E-value=2e-05 Score=50.67 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=68.9
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333 107 FLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183 (210)
Q Consensus 107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 183 (210)
....++|..|++.+.+..+......... ....+..++|.++...|++++|+..++++++++++.+|......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4568999999999999999988766554 5667888999999999999999999999999999999887777776666
Q ss_pred HHHH
Q 028333 184 ADCY 187 (210)
Q Consensus 184 g~~y 187 (210)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6543
No 122
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.31 E-value=4e-06 Score=52.59 Aligned_cols=65 Identities=29% Similarity=0.456 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+++++|.++...|++++|+..++++++.. +....++..+|.++...|++++|..+++++++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999998764 444578999999999999999999999999887653
No 123
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.8e-05 Score=63.75 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=94.2
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 143 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l 143 (210)
.++++.+.+.....+. +..++..+|..|-+.|+-.+|.+++-.....++. ..+..-.+
T Consensus 575 aqaie~~~q~~slip~----------------dp~ilskl~dlydqegdksqafq~~ydsyryfp~------nie~iewl 632 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPN----------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------NIETIEWL 632 (840)
T ss_pred HHHHHHHHHhcccCCC----------------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCc------chHHHHHH
Confidence 4455556665555443 2346788999999999999999998887776554 66677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
|..|....-.++|+.||+++.-+. |........++.|+...|+|.+|.+.|......++.|
T Consensus 633 ~ayyidtqf~ekai~y~ekaaliq------p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAALIQ------PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcC------ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 988988888999999999996664 7777788889999999999999999999887776653
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=7.8e-05 Score=56.60 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---------------K---YREAIK 158 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---------------~---~~~A~~ 158 (210)
..+.+++|.+|+..++|++|+.+++++++..+. ++....+++.+|.++...+ | ..+|+.
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 345789999999999999999999999998775 4456778999998865443 2 245777
Q ss_pred HHHHHHHHHHHhCCCc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 159 YHSMVLQISEREGEYS-----------GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 159 ~~~~al~~~~~~~~~~-----------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.|++.++...+..-.+ ..+.--+.+|..|...|+|.-|+..++..++.+++
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence 8888776653221111 12223456899999999999999999999987653
No 125
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.27 E-value=8.6e-06 Score=68.94 Aligned_cols=100 Identities=24% Similarity=0.239 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhCCCc
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEYS 174 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~ 174 (210)
+..++..|..+...|++.+|.+.|..|+.+.+. ...+...+|.++...|+..-|.. .+..++++. |
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d------p 751 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD------P 751 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC------C
Confidence 345566788888888899999988888887554 66677888889988887777766 888887775 8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
....+|+.+|.++..+|+.+.|.++|.-|+++-+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 8889999999999999999999999999998654
No 126
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.26 E-value=1e-05 Score=62.87 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
+..++.-.+.+|..++..|++..|+..|..|++..+. .-.+++..|.+|...|+-..|+.-+.+++++.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----- 102 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLELK----- 102 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----
Confidence 3345556788999999999999999999999995443 67789999999999999999999999999886
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+....+....|.++.++|+++.|..-|++.++.-+
T Consensus 103 -pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~ 137 (504)
T KOG0624|consen 103 -PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP 137 (504)
T ss_pred -ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC
Confidence 77788899999999999999999999999987544
No 127
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3.3e-05 Score=57.02 Aligned_cols=114 Identities=13% Similarity=0.185 Sum_probs=90.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~ 169 (210)
+.+..-+..+...+++| ...+..+|+..++++++++-..|.....+..+..+|.+|-. +.++++|+.+|+++-+..+.
T Consensus 68 ~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 68 GSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred CCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 33333343444444454 56699999999999999999998888888888999999965 59999999999999998865
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.........++...+..-..+++|.+|+..|++...
T Consensus 147 ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 147 EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556788888888899999999999988654
No 128
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.24 E-value=1e-05 Score=64.72 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=74.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183 (210)
Q Consensus 104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 183 (210)
+..+...+++..+.....+++.. .....+....+...+|.++...|++++|...++++++.. +....++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------p~~~~~~~~l 154 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN------PDDAWAVHAV 154 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCcHHHHHH
Confidence 55555555555555555555543 223344456677889999999999999999999999886 5557889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 184 ADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 184 g~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
|.++...|++++|+.+++++++..+
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccC
Confidence 9999999999999999999988654
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=1.4e-05 Score=70.12 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+..++.+|.++++.+++..+... .++.+... +++......+++.+|.||-++|++++|...++++
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33456666666666666655543 33333222 1223334568999999999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+++. +..+.+++++|..|... +.++|..++.+|+..+
T Consensus 143 L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 143 VKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 9986 77899999999999999 9999999999998764
No 130
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.23 E-value=3.1e-05 Score=57.48 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=79.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CC----CcchH
Q 028333 106 NFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE---GE----YSGST 177 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~----~~~~~ 177 (210)
-|.....+++|++.|.-|+-.+...+ ++...+..+..+|++|...++.+....++++|++...+. .+ .....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 44556789999999999998887665 445678899999999999999777777777776666542 11 22356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.+.+.+|.++...|++++|..+|.+.+..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 78999999999999999999999998764
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=1.7e-05 Score=52.79 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...++.+|..+...|++++|+..|+++++.. .+.+....+++.+|.++...|+++.|..+|++++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999997653 22234467899999999999999999999999987654
No 132
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.20 E-value=3e-05 Score=68.34 Aligned_cols=100 Identities=7% Similarity=0.066 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
......+|..+..+|+|++|++.|+++++..+. ...++..++.++...+++++|+..++++.+.. +..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d------p~~ 169 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAERD------PTV 169 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC------cch
Confidence 444556688888899999999999999886544 45566778888888999999999998886654 322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+..++.++...++..+|++.++++++..++
T Consensus 170 -~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 170 -QNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred -HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 22355566666677777799999999887664
No 133
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.18 E-value=4e-06 Score=43.02 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+|+++|.+|..+|++++|+.+|++++++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666543
No 134
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5e-06 Score=61.39 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
-....|+.++..+.|+.|+..|.+++.+.+. .+..+.|.+.+|++.++++.......+++++. +....
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~------~N~vk 79 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD------PNLVK 79 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC------hHHHH
Confidence 3455688899999999999999999997654 56678899999999999999999999999986 77889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.++.+|.+......|+.|+..+.+|++...
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 999999999999999999999999987654
No 135
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.16 E-value=0.00058 Score=45.14 Aligned_cols=108 Identities=20% Similarity=0.247 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH----H--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----E--EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~----~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
+.-|.-.+.-|.|++|...+.+++++.+++.... . .+.++..|+.++..+|+|++++....+++......+...
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 3345556678899999999999999998864321 1 244667888899999999999999999999997765432
Q ss_pred -----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 175 -----GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 175 -----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+.+-++.|..+..+|+.++|+..|+.+-++..
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 2345678899999999999999999999987653
No 136
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.14 E-value=0.00016 Score=59.16 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+...|.+...+|+++.|..++.++.+..+. .. ..+....+.++...|++++|...+++..+.. |....
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~---~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------P~~~~ 188 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGN---DN--ILVEIARTRILLAQNELHAARHGVDKLLEMA------PRHKE 188 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH
Confidence 4566789999999999999999999774432 11 1233345899999999999999999998775 77778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
++..++.+|...|+++.|.+.+.+..+.
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999888754
No 137
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.14 E-value=4e-05 Score=67.53 Aligned_cols=60 Identities=7% Similarity=0.101 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
..+|.++...|++++|++.|+++++.. |....++..++.+|...++.++|++.++++...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 334555555566666666666665543 334455555555566666666666666555443
No 138
>PLN02789 farnesyltranstransferase
Probab=98.14 E-value=5.9e-05 Score=59.53 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 97 LLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~--~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..++.+.+.+....++. ++++.++.+++++.++ ...++.+.|.++...|+++++++++.++++.. +
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------~ 173 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------V 173 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------C
Confidence 34578888888877764 7788999999986554 67799999999999999999999999999885 6
Q ss_pred chHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhccC
Q 028333 175 GSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLESD 210 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~---g~~----~~A~~~~~~al~~~~~~ 210 (210)
....+++..|.+...+ |.+ +.++.+..+++...+++
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N 216 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN 216 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC
Confidence 6678899999988776 333 57888888999876653
No 139
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.12 E-value=9.8e-06 Score=41.42 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.+++.+|.+|..+|++++|+.+|++++++.++|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777766553
No 140
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.08 E-value=0.0011 Score=47.77 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
-.++..+|..|...|+++.|++.|.++.+.+ ..+......+.++-.+....+++.....+..++-......++....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 3467889999999999999999999987743 3455577788899999999999999999999999888776665556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
......-|..+...++|..|.+.|-.+...
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 666777788888899999999998766543
No 141
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.07 E-value=4e-05 Score=51.50 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+.+++|.++-..|+.++|+.+|++++..- -+......++..+|.++..+|++++|+..+++++..++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999997742 123445679999999999999999999999999887654
No 142
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.06 E-value=5e-05 Score=53.95 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTEAYGA 182 (210)
Q Consensus 113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 182 (210)
|+.|.+.++......+. .++.+++.|.++..+.++ ++|+.-|++|+.+. |...+++++
T Consensus 7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~------P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN------PNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC------CchHHHHHH
Confidence 56666666666664333 688889999888776544 45566666666665 778899999
Q ss_pred HHHHHHHcCC-----------HHHHHHHHHHHHHhh
Q 028333 183 IADCYTELGD-----------LERAARFYDKYISRL 207 (210)
Q Consensus 183 lg~~y~~~g~-----------~~~A~~~~~~al~~~ 207 (210)
+|.+|..++. |++|..+|++|.+.-
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988665 455556666555543
No 143
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=7.6e-05 Score=60.45 Aligned_cols=92 Identities=24% Similarity=0.274 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
...+.++...++.++|.+.+++++.+.+. ......++|.++.+.|++.+|+..++..+.-. +..+..|
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~------p~dp~~w 411 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFND------PEDPNGW 411 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CCCchHH
Confidence 33455666666666666666666664332 34455566666666666666666666554332 4455556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 181 GAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
..+|..|..+|+-.+|...+.+.+
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHH
Confidence 666666666655555555444433
No 144
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.05 E-value=0.00053 Score=53.70 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE---------KKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
-+.+....|.+.+.+|++++|..-|...++-.++.+..... ...+......+...||+..++++....+++
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 44456778999999999999999999988855543221110 112223334455577788888888777776
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 167 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
. ++.+..+...+.||...|+..+|+.-...+-++
T Consensus 185 ~------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 185 Q------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred C------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 5 666777777788888888888887777766544
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=7.6e-05 Score=62.65 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.++..+|..+...|++++|...+++|+.+. + ...+|..+|.++...|++++|.+.|++|+.+.+.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4677888888889999999999999999885 4 3679999999999999999999999999987653
No 146
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.05 E-value=9.2e-05 Score=54.66 Aligned_cols=109 Identities=19% Similarity=0.167 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQI 166 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~ 166 (210)
.+.+.+|.+++..++|+.|+..+++.++..++ ++....+++.+|.+++... ...+|+..|+..++.
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999998776 4456778899999876543 234788888888766
Q ss_pred HHHhCCCc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 167 SEREGEYS-----------GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 167 ~~~~~~~~-----------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+..-.. ..+.--+.+|..|...|.+..|+..++..++.+++
T Consensus 120 yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 120 YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 53321111 12223466899999999999999999999987664
No 147
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.02 E-value=8.8e-05 Score=60.51 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---------c--C--------------ChHHHHHHHHHHHHHHHHcCCH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---------V--K--------------DPIEEKKAARGLGASLQRQGKY 153 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~---------~--~--------------~~~~~~~~~~~lg~~~~~~~~~ 153 (210)
.....|..+...|+.++|....+++++.... + + ..+..+..+..+|.++...+++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~ 344 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW 344 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 4555677777777777777766655541110 0 1 1122345678899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 154 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
++|.++|+++++.. |.. ..+..++.++..+|+.++|.++|++++...
T Consensus 345 ~~A~~~le~al~~~------P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 345 QEASLAFRAALKQR------PDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhcC------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999998774 433 456789999999999999999999998765
No 148
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=2.2e-05 Score=66.24 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+...+|...+..++|+++..+++.++++.+ .....++++|.+..+.++++.|..+|...+... |+...
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~np------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~------Pd~~e 554 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINP------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE------PDNAE 554 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCc------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC------CCchh
Confidence 445556666778999999999999988644 377789999999999999999999999998876 88889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+++|++..|...|+..+|...+.+|++-
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999874
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=1.8e-05 Score=57.83 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..+..++..|+.|-..|-+..|..-|.+++.+.++ .+.+++.+|..+...|+|+.|.+.|...+++. |
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD------p 130 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD------P 130 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccC------C
Confidence 35667889999999999999999999999998766 88999999999999999999999999999886 6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..-.++.|.|....--|++..|.+-+.+-....++
T Consensus 131 ~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred cchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 66788999999988899999999988776655444
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.99 E-value=0.00043 Score=56.52 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=76.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
+...+.....+|+++.|..++.++.+..+. . ........+..+...|++++|+..+++..+.. |....+
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~---~--~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~------P~~~~a 189 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADN---D--QLPVEITRVRIQLARNENHAARHGVDKLLEVA------PRHPEV 189 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---c--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHH
Confidence 344566669999999999999999874332 1 11222334889999999999999999997775 777899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 180 YGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+..++.+|...|++++|.+.+.+..+
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999988877664
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00014 Score=54.38 Aligned_cols=95 Identities=24% Similarity=0.233 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
...|..+-..|+|++|+++|+..++ +.+.....+-.--.+...+|+.-+|+.-+.+.++.+ ....++|
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------~~D~EAW 157 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------MNDQEAW 157 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------cCcHHHH
Confidence 3457778889999999999999887 333344444444555667888889999999998887 7778999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 181 GAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
..++.+|...|+|++|.-|+++.+=+-
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 999999999999999999999987543
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.98 E-value=0.00013 Score=56.03 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+++++|.+|+..|++++|+.+|+++++..+ ++.....+++.+|.++..+|++++|...|+++++..
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34689999999999999999999999998655 466678899999999999999999999999998775
No 153
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.95 E-value=3.4e-05 Score=40.12 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 140 ARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+.+||.+|...|+|++|+++|++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4555556666666666666666555444
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=6.9e-05 Score=66.00 Aligned_cols=106 Identities=8% Similarity=0.056 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG---- 171 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---- 171 (210)
...++..+...+...+++++|+...+.+++..+. ....++.+|.++.+.+++..|... .++.+.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4456888899999999999999999998885544 788999999999999999888776 6655553221
Q ss_pred ---------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 172 ---------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 172 ---------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+......+++.+|.||..+|+.++|...|++++++-++
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~ 148 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD 148 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc
Confidence 22233468899999999999999999999999987654
No 155
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00037 Score=50.51 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=75.2
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
++.+...|..++...+. -........+.+.|.++..++.++.|+.-+.+++++.+. ...++..
T Consensus 111 yeeA~skY~~Ale~cp~-----------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~kAl~R 173 (271)
T KOG4234|consen 111 YEEANSKYQEALESCPS-----------TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEKALER 173 (271)
T ss_pred HHHHHHHHHHHHHhCcc-----------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHHHHHH
Confidence 67777888888888774 333456667899999999999999999999999998766 6677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 143 LGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+.+|-+...|+.|++.|++.++..
T Consensus 174 RAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 8999999999999999999998875
No 156
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.00058 Score=46.12 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
-..+++.|.+++...++ .+.++++.+..+.-+|+.++|+.-++++++++.. .......++..
T Consensus 59 Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacqa~vQ 120 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQAFVQ 120 (175)
T ss_pred hHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHHHHHH
Confidence 45677889999988875 5778999999999999999999999999998754 24556678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 143 LGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.|.+|..+|+.+.|...|+.+.++-
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhC
Confidence 9999999999999999999997653
No 157
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.00015 Score=58.76 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
....+.+..+..++..++++.|...+...+.. .+..+......|.++...++.++|.+.+++++... |
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------P 371 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD------P 371 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C
Confidence 34456788888899999999999988886553 33466677788999999999999999999998876 6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.......++|.+|.+.|++.+|+..++..+.-.++
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 66788999999999999999999999888765544
No 158
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.93 E-value=0.00022 Score=59.32 Aligned_cols=104 Identities=20% Similarity=0.109 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..-.+..|.++...|+.++|++.|++++...... +......++.+|+++..+.+|++|..+|.+..+.. .+..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----~WSk 339 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----KWSK 339 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----ccHH
Confidence 3346778999999999999999999998543332 22345678999999999999999999999987753 4678
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhh
Q 028333 177 TEAYGAIADCYTELGDL-------ERAARFYDKYISRL 207 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~ 207 (210)
+...+..|.|+...|+. ++|.+.+.++-...
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 88899999999999999 77777777765543
No 159
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.92 E-value=0.00021 Score=59.92 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
.+.....++++.+|..|...|++++|+.+.++|++..+. ..+.|...|.++-..|++.+|.+..+.|-.+.
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--- 258 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEARELD--- 258 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---
Confidence 344556788899999999999999999999999996554 78899999999999999999999999997664
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
...-......+..+...|+.++|......
T Consensus 259 ---~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 259 ---LADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred ---hhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 22234555667777788999999887643
No 160
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.91 E-value=2.8e-05 Score=40.48 Aligned_cols=30 Identities=23% Similarity=0.529 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++.+||.+|..+|++++|+++|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999876543
No 161
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.91 E-value=0.00015 Score=59.30 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----------------C--------------hHHHH--HHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------------D--------------PIEEK--KAARGLG 144 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~----------------~--------------~~~~~--~~~~~lg 144 (210)
.......|..+...|++++|...++++++..+... + .+..+ ..+..+|
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg 342 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG 342 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 34566677778888888888877777666332211 0 11123 4566889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 145 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+++...|++++|.++|+++..... .+.. ..+..+|.++..+|+.++|.++|++++...
T Consensus 343 ~l~~~~~~~~~A~~~le~a~a~~~----~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 343 QLLMKHGEFIEAADAFKNVAACKE----QLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhc----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999995433221 1333 336689999999999999999999987653
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.3e-05 Score=60.73 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
...+.+++..|.+++...+.+.|+.+|.+++.+.+.-.+. .......-.-|.-.++.|.|..|-+.|..+|.+.
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 3345567778999999999999999999999987653221 1123355567888899999999999999999987
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 168 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.. +...++.+|.+.|.+...+|+..+|+.-++.++++-
T Consensus 280 P~--n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 280 PS--NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred cc--ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 43 445678899999999999999999999999998764
No 163
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00079 Score=50.34 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc------CChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIE------EKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~------~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
....++...|+-++..|+|.+|...|..|+...+.+ +++.+ +...+.|.+.|+...|+|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 445567889999999999999999999999877653 22222 234778999999999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+... +.+..+|+..|..+..-=+.++|..-|.++++..
T Consensus 256 iL~~~------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 256 ILRHH------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhcC------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 87764 8888999999999999999999999999998754
No 164
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.83 E-value=6.6e-05 Score=38.35 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+.+++++|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3578889999999999999999999998875
No 165
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.80 E-value=8e-05 Score=37.98 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+++.+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566677777777777777777777766654
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.73 E-value=3.6e-05 Score=39.47 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q 028333 160 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197 (210)
Q Consensus 160 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 197 (210)
|++++++. |..+.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67787775 888899999999999999999886
No 167
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0018 Score=51.08 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAAL 124 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al 124 (210)
+-....++|.|++.+|+|++|+..|+-+.
T Consensus 56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~ 84 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLGDYEEALNVYTFLM 84 (557)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 34466888999999999999988665443
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.71 E-value=0.00048 Score=48.46 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=62.2
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 130 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 130 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+.+...-...+..|.-++..|++++|...|+-..-.. +.....+..+|.|+..+++|++|+..|..|..+..+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN 103 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 34556677788999999999999999999998765543 566788999999999999999999999998876544
No 169
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.68 E-value=0.00013 Score=39.72 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 185 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 185 (210)
.++..+|.+|...|++++|+..|+++++.. |....++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCCHHHHHHhhh
Confidence 356788888999999999999999988875 666777777764
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=97.67 E-value=0.0005 Score=55.95 Aligned_cols=100 Identities=12% Similarity=-0.029 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRN---------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+.++..++.++... .+-.+|.+..++|+++.+. .+.++..+|.+....++++.|...|++|+.+.
T Consensus 295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 33444555555533 2345666667777775443 67789999999999999999999999999886
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 168 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
|..+.+++..|.+....|+.++|.++.++|+.+-+
T Consensus 369 ------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 369 ------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred ------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 88899999999999999999999999999987654
No 171
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.65 E-value=0.00019 Score=60.08 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.++..+.-.+..++|.+.+...+..++-.+ ..++++.-.|......|+-++|.++...+++.. .....
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~------eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d------~~S~v 76 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFP------EHGESLAMKGLTLNCLGKKEEAYELVRLGLRND------LKSHV 76 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCC------ccchhHHhccchhhcccchHHHHHHHHHHhccC------cccch
Confidence 466677777888899999888888877333 367778888999999999999999999987743 55668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
||+.+|.++..-.+|++|++||..|+.+-++
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999887543
No 172
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00041 Score=55.51 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
++.-|...+..++|..|+.+-+|++++-++ ...++.--|.+..+.++.++|+-.|+.|..+. |....+
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL~~ 370 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLA------PYRLEI 370 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhHHH
Confidence 455567778889999999999999996555 67788889999999999999999999998887 777899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|..+-.+|...|++.+|...-..++..+++
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988888877654
No 173
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.63 E-value=0.0002 Score=36.35 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+++.+|.++...|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567888888888888888888888888774
No 174
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.0059 Score=42.39 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----CC-hHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-PIE----------EKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-----~~-~~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
.....|......++.+.++..+.+++.+.+-- .+ .+. ...+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34445666667788888888888888877531 11 111 122556778888899999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++... |..-.++..+-.+|...|+...|+..|+++...+.
T Consensus 88 ~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 88 ALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99986 77788999999999999999999999999877654
No 175
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00094 Score=50.62 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
...+.+++|.+++.+|+|+.|...|..+.+ +..+.+..+++++.+|.+...+|+-++|...++++++-.
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 345789999999999999999999999887 555677788999999999999999999999999998776
No 176
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0017 Score=49.14 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
......+|.+..+-||.+.|..+|++.-+....+++-........+.+.+|.-.+++..|...+.+.+... +..
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D------~~~ 285 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD------PRN 285 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC------CCc
Confidence 33455566777777777777777776666666666655556666666666777777777777776665543 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+.+.++.|.|..-.|+...|++..+.++++.+
T Consensus 286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 56667777777777777777777777666554
No 177
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0021 Score=53.55 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH------------------------HHhcC-ChHHHHHHHHHHHHHHHHcCCH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALEL------------------------AQNVK-DPIEEKKAARGLGASLQRQGKY 153 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l------------------------~~~~~-~~~~~~~~~~~lg~~~~~~~~~ 153 (210)
...-.|.+++.+++|++|+..|+..++- .+... .+...-+.++|.+.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 4455789999999999999988765321 11111 1122345779999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC---CCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 154 REAIKYHSMVLQISEREG---EYS------GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~~---~~~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.+|++.+++++++.++.- +.. ....+...++.++..+|+.++|...|...+.....|
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 999999999988886531 111 244578889999999999999999999888765443
No 178
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00067 Score=55.40 Aligned_cols=121 Identities=10% Similarity=0.067 Sum_probs=84.8
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhcCCh---------
Q 028333 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVKDP--------- 133 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-l~~~~~~~--------- 133 (210)
+...++|.++........-....-...-+.-.....++++|.+++..+.|.-+..+|.+|+. .+.++...
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 34445677766654432111111111223333455668899999999999999999999995 55443221
Q ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333 134 --IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 134 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 190 (210)
......++|.|..|...|++-.|..+|.++.... ..++..|.++|.|....
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf------h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF------HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHH
Confidence 1234588999999999999999999999999988 45567899999988653
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.56 E-value=0.0053 Score=46.30 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+..+++.|...+..|+|++|+.+|++.... .-..+....+...++.++++.++|+.|+.+.++-++.. +.++..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~---~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---P~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR---HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---PTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---CCCCCh
Confidence 345889999999999999999999987753 33344457899999999999999999999999998775 455777
Q ss_pred HHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHhhcc
Q 028333 177 TEAYGAIADCYTELG-----D---LERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g-----~---~~~A~~~~~~al~~~~~ 209 (210)
..+++..|.++...= | ...|...++..+..+++
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 889999999977632 2 34555566666655543
No 180
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=97.55 E-value=0.0038 Score=38.17 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
+......|.-.+.+.+.++|+..++++++ +..++.....++..+..+|...|+|.+++.+..+=++++++.+++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~---k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALE---KITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33456678778899999999999999998 444567788899999999999999999999999999988776553
No 181
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.54 E-value=0.00092 Score=42.91 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=54.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 147 LQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 147 ~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....+||..|++.+.+..+......... ....+..++|.++...|++++|+..+++|+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999887665544 45678899999999999999999999999998753
No 182
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.52 E-value=0.00025 Score=60.11 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.+...++..|.+..+.++++.|...|..++.+.+. ...+++|++.+|...++-.+|...+++|++.. .
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn------~ 584 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN------Y 584 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC------C
Confidence 45567899999999999999999999999997554 88899999999999999999999999998875 2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.....+-|--.+....|.+++|+..|.+.+++-
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 333556677777889999999999999887654
No 183
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.00027 Score=57.60 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhCCC
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGEY 173 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~ 173 (210)
.++-.++.++..|+|.+|.+.+... .+.+.-+.. ......++|+|.++++.+.|.-+..+|.+|++ ...++.+.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555678888889999888876543 223332321 12455778999999999999999999999996 44443221
Q ss_pred -----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 174 -----------SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 174 -----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...-...||.|..|...|++-.|.++|.++...+.
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 12346799999999999999999999999998764
No 184
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.49 E-value=0.001 Score=49.45 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=70.8
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-------CChHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPIE 135 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-------~~~~~ 135 (210)
.+.+++.|.-++-.+.. ...+....+..++.+|++|..+++-+....++.+|++...+. .....
T Consensus 93 ~~~ai~~YkLAll~~~~---------~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQI---------KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred HHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 45566666666655443 133455678889999999999999777777777777666542 12334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.....+-+|.+++..|++++|..+|.+++...
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 56688889999999999999999999997654
No 185
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.47 E-value=0.00092 Score=56.10 Aligned_cols=69 Identities=20% Similarity=0.147 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.....+++.++..|-..|++++|+.+.+++|+.. |...+.|...|.++...|++.+|.++.+.|..+-.
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 3346688999999999999999999999998875 78899999999999999999999999999987643
No 186
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.46 E-value=0.0086 Score=47.71 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=75.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH---------Hhc--C--------------ChHHHHHHHHHHHHHHHHcCCHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELA---------QNV--K--------------DPIEEKKAARGLGASLQRQGKYR 154 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~---------~~~--~--------------~~~~~~~~~~~lg~~~~~~~~~~ 154 (210)
....+.-+...|++++|.+..+.+++-. +.. + ..+..+..+..+|..|+..+.+.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 3445666777788888877666555321 100 1 11122357789999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 155 EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 155 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+|..+|+.+++. ...+..+..+|.++..+|+..+|.+.+++++-...
T Consensus 346 kA~~~leaAl~~-------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 346 KASEALEAALKL-------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999776 33467789999999999999999999999986543
No 187
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.46 E-value=0.00051 Score=34.87 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+++.+|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788888888888888888888888775
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.46 E-value=0.017 Score=43.65 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----cCCHH---HHHHHHHHHHHHHHHh
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-----QGKYR---EAIKYHSMVLQISERE 170 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-----~~~~~---~A~~~~~~al~~~~~~ 170 (210)
+...++..++..++|+.|+.+.++.+.+.+. ++....+++-.|.+++. ..|.. .|+..|++.+.-.
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--- 146 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--- 146 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---
Confidence 5788899999999999999999999998776 45566788888888764 23333 4455555554333
Q ss_pred CCCcchH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 171 GEYSGST--------------EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 171 ~~~~~~~--------------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+.+-.. .--..+|+.|.+.|.+.-|+..++..++-.++
T Consensus 147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 3322211 22355899999999999999999999886553
No 189
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0015 Score=52.34 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
....++.-.|......++.++|+-.|+.|..+++. .-++|.++-.+|...|.+.+|....+.+++.
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 34556777899999999999999999999887765 5667777777777777777666665555543
No 190
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.45 E-value=8.5e-05 Score=60.16 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
.-..|..++.-++|+.|+..|.+|+++-+. -+..+.+.+.++...+++..|+.-+.++++.. +....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d------P~~~K~ 74 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIELD------PTYIKA 74 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhcC------chhhhe
Confidence 344577788889999999999999997554 56677788899999999999999999999886 778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
|+.-|.....++++.+|..-|++.....++|
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 9999999999999999999999988777654
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.43 E-value=0.0029 Score=43.57 Aligned_cols=71 Identities=23% Similarity=0.195 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....++.-|...+..|+|++|+..|+....- ..-.+....+.+.+|.+|+..+++++|+..+++-+++.++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r---yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR---YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4557788999999999999999999988433 3333456688999999999999999999999999988765
No 192
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.42 E-value=0.00034 Score=35.20 Aligned_cols=31 Identities=32% Similarity=0.692 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+++.+|.+|...|++++|+..|++.++.+++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4666777777777777777777776666554
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.004 Score=52.52 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHH
Q 028333 94 KEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY--------REAIKYHSM 162 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~--------~~A~~~~~~ 162 (210)
..++..++..|..+...++ +..|+..|++|+++.+. .+.++..++.+|.....+ .++....++
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3466677888888876655 88999999999997665 566666666666543222 233333333
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++.+ ...+..+.+|..+|..+...|++++|..++++|+++.+
T Consensus 410 a~al----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 410 IVAL----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred hhhc----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 3222 12344467899999999999999999999999998754
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0015 Score=49.41 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.+.+-+..+..-.+.|.-....+.+.++ .+++..+.....+|.+.++.||-+.|..+|+.+-+...++++.....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 3556678888889999999999999988 35556777889999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+..+.+.+|...+++..|...|.+++...+
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCC
Confidence 9999999999999999999999998876543
No 195
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.37 E-value=0.002 Score=56.78 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE- 170 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~- 170 (210)
.++.+..++..+|.+|...|.|..|+..|.++..+.+. .....+..+......|+|.+|++.+.+.+......
T Consensus 591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34446667889999999999999999999999987544 66677888999999999999999999988766432
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.-..+.+.++.+++..+...|=..+|.++++++++.+
T Consensus 665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2334678889999999999999999999999998865
No 196
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00079 Score=52.97 Aligned_cols=87 Identities=24% Similarity=0.303 Sum_probs=68.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 185 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 185 (210)
-+....+|+.|+..++-.+.+ +.......-..+|.|++.+|+|++|+..|+-+.+-. ...+....++|.
T Consensus 31 dfls~rDytGAislLefk~~~-----~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------~~~~el~vnLAc 99 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL-----DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------DAPAELGVNLAC 99 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc-----chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC------CCCcccchhHHH
Confidence 356678999999887766543 233345667789999999999999999998875522 445678899999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 028333 186 CYTELGDLERAARFYDKY 203 (210)
Q Consensus 186 ~y~~~g~~~~A~~~~~~a 203 (210)
|++-+|.|.+|...-++|
T Consensus 100 c~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999998876665
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.33 E-value=0.00055 Score=37.20 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.++..+|.+|..+|++++|++.|+++++..++|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999988764
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.32 E-value=0.00025 Score=36.29 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 028333 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 157 (210)
Q Consensus 120 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 157 (210)
|++++++.+. .+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN------NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788887665 7889999999999999999986
No 199
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.30 E-value=0.00054 Score=53.40 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191 (210)
Q Consensus 112 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 191 (210)
++.+|...|++..+ +.+ ..+..++.++.++..+|+|++|...+++++.. .+..++++.|+..+...+|
T Consensus 182 ~~~~A~y~f~El~~---~~~---~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 182 KYQDAFYIFEELSD---KFG---STPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp CCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHh---ccC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhC
Confidence 35555555555322 211 23455677777777777777777777776532 2556677777777777777
Q ss_pred CH-HHHHHHHHHHH
Q 028333 192 DL-ERAARFYDKYI 204 (210)
Q Consensus 192 ~~-~~A~~~~~~al 204 (210)
+. +.+.++..+..
T Consensus 250 k~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 250 KPTEAAERYLSQLK 263 (290)
T ss_dssp -TCHHHHHHHHHCH
T ss_pred CChhHHHHHHHHHH
Confidence 76 44444554433
No 200
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.30 E-value=0.01 Score=45.26 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 190 (210)
.+-...++.+++|+..+.+.+...........+|..|+..|++++|+.+|+.+....++.+=......+...+..|+...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 45567788999999999988888878888889999999999999999999999888776554455778899999999999
Q ss_pred CCHHHHHHHHHHH
Q 028333 191 GDLERAARFYDKY 203 (210)
Q Consensus 191 g~~~~A~~~~~~a 203 (210)
|+.+..+...-+.
T Consensus 232 ~~~~~~l~~~leL 244 (247)
T PF11817_consen 232 GDVEDYLTTSLEL 244 (247)
T ss_pred CCHHHHHHHHHHH
Confidence 9998888765443
No 201
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.29 E-value=0.001 Score=58.45 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+...|..|...+++..|+..|+.++...++ ..+++..+|.+|...|.|..|+..|.++..+. |....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr------P~s~y 631 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLLR------PLSKY 631 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC------cHhHH
Confidence 3455788888888899999999998886555 67788899999999999999999999987765 66667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+-+-.+.....+|+|++|+..+...+...
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 78888888999999999999888777644
No 202
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.28 E-value=0.0024 Score=53.70 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.-.+|..+|.++...++|++|+.+|..|+.+-+. ....+..++....++++|+...+.-.+.++.. +.
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~------~~ 141 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR------PS 141 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------hh
Confidence 3447788999999999999999999999996544 67788999999999999999888888887765 66
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.-..|...+..++..|++..|.+..+.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999999999877765543
No 203
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.28 E-value=0.00087 Score=35.62 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
++.++|.+|...|++++|..++++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4444555555555555555555444443
No 204
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.22 E-value=0.0013 Score=34.93 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+.+++++|.+|..+|++++|..++++++.+.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3467788888888888888888888888777543
No 205
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0067 Score=50.71 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE------------ 168 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------------ 168 (210)
+..+.|.|+++..++|+..++- ++ + + ....+.-.|.+++.+++|++|++.|+..++-..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~-~~---~--~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG-LD---R--L---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc-cc---c--c---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 6789999999999999998872 21 1 1 133566678999999999999999998842110
Q ss_pred ------------HhCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 169 ------------REGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 169 ------------~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
..... ...-+.++|.|.++...|+|.+|++.+++|+.+.
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 01111 2255679999999999999999999999996654
No 206
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.18 E-value=0.0069 Score=49.17 Aligned_cols=91 Identities=19% Similarity=0.097 Sum_probs=74.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q 028333 105 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 184 (210)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 184 (210)
..+...++++.|+..+++..+. + +.+...++.++...++..+|+..++++++.. +.....+...+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~-----~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~Qa 241 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER-----D----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNLQA 241 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc-----C----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHHHH
Confidence 4445567899999998886652 1 2345668999999999999999999998554 55588899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 185 DCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 185 ~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
..+...++++.|++..+++.+..+.+
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999987653
No 207
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.17 E-value=0.007 Score=43.23 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHH
Q 028333 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK----YREAIKYHSMVLQIS 167 (210)
Q Consensus 111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~----~~~A~~~~~~al~~~ 167 (210)
.-+++|+.-|++|+.+.+. ...+++++|.+|..++. ..+|..+|++|....
T Consensus 49 ~miedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 3467788888888888776 78899999999977553 334444444444333
No 208
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.019 Score=43.18 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183 (210)
Q Consensus 104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 183 (210)
|.....+..+.++..+|++|..+....|.+...+.++-..|.+. ...+++.|+..|++++.+....+........+...
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 34444445555555555555555555554444444444333332 23455555555555555554333323333444455
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 028333 184 ADCYTELGDLERAARFYDK 202 (210)
Q Consensus 184 g~~y~~~g~~~~A~~~~~~ 202 (210)
++++....++++|-..+.+
T Consensus 157 sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hhHhhhhHHhhHHHHHHHH
Confidence 5555555555555544433
No 209
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.035 Score=48.67 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHhcCChHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALE----LAQNVKDPIEE----------KKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----l~~~~~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
..+++.|......++.+.|++||+|+-. +.+-+.+.+.. ...|..+|...-..|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3567788888889999999999987532 22222221111 235667788888899999999999887
Q ss_pred HHHHHH---------------hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 164 LQISER---------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 164 l~~~~~---------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
-..... ..+..+...+.+.+|+-|...|+..+|+.+|.+|..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 533321 112233346788999999999999999999988754
No 210
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.05 E-value=0.0011 Score=32.37 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++.++|.++...|++++|..++++++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 456677777777777777777777766544
No 211
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.015 Score=45.01 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.+.|.+.++.|+|+.|+.-|+.+++.. --.+-.-++++.+++..|+++.|+++..+.++.
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvs------GyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVS------GYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhc------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 455555566666666666666665553 223344556666666666666666666555543
No 212
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.99 E-value=0.0016 Score=50.76 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=63.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
.-.++..+++++.|...++..- +..+... .+...-+++....| .+++|...|++..+. .+.....+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~----~~~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~l 204 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQ----QIDEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLL 204 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH----CCSCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----hcCCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHH
Confidence 4567888999999987776643 3333322 22233344444444 689999999986322 23456788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 181 GAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.+|.|+..+|++++|...++++++..++
T Consensus 205 ng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 205 NGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999875443
No 213
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.95 E-value=0.046 Score=47.30 Aligned_cols=115 Identities=15% Similarity=0.024 Sum_probs=85.1
Q ss_pred chHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 92 PKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+.+.++.+.+.+|.+++ ...+++.|..++.|++.++++.+-......+.+-++.++.+.+... |+..+++.++..+..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 34568889999999888 7999999999999999999885555556667777788888887777 999999999988654
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+.........+-....+...+|+..|.+.++......
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 3333222222221333333379999999998887765
No 214
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.88 E-value=0.028 Score=51.52 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
..+...|...|++++|.+.+++..+. +.. ....++..+...|.+.|++++|...|++..+. +- ......|
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~----G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~Pdvvty 722 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQ----GIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RPTVSTM 722 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHHHH
Confidence 33444455555555555555544331 111 12335566666666666666666666655321 11 2233556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 181 GAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
..+...|...|++++|.+.|++..
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666777777777666554
No 215
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0073 Score=46.67 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----
Q 028333 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER---- 169 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---- 169 (210)
+.++....+.|-+.++.|+|+.|++-|+.|++...- .+-.-++++.++++.++|.+|+++..+.++---+
T Consensus 141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred CCccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 345667889999999999999999999999996432 3445689999999999999999998887643321
Q ss_pred --------------hCCC-----cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333 170 --------------EGEY-----SGSTEAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 170 --------------~~~~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
.++. .....+++-.+.+++..++++.|.+.+.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 0010 1233456777888999999998887653
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=96.84 E-value=0.0088 Score=48.93 Aligned_cols=92 Identities=12% Similarity=-0.049 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
++.++..+|.+....++++.|...|++|+.+.+. .+.+++..|.+....|+.++|.+.+++++++. |.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs------P~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICIDKSLQLE------PR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------ch
Confidence 5667888999999999999999999999998776 88999999999999999999999999999885 33
Q ss_pred -hHHHHHHHHH-HHHHcCCHHHHHHHH
Q 028333 176 -STEAYGAIAD-CYTELGDLERAARFY 200 (210)
Q Consensus 176 -~~~~~~~lg~-~y~~~g~~~~A~~~~ 200 (210)
.......+.. .|.. .-.+.|+..|
T Consensus 405 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 405 RRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred hhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 2222233333 5553 4456666654
No 217
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.76 E-value=0.036 Score=50.83 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+..+-..|...|++++|.+.|++..+. +. ......++.+...|.+.|++++|+..|++.
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~----gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEY----NI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333444555555555555555544331 10 011223444444444444444444444443
No 218
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.75 E-value=0.065 Score=38.68 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH
Q 028333 114 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 193 (210)
Q Consensus 114 ~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 193 (210)
++-++.++.-++-++..........++..+|.-|...||.+.|+..|.++.+... ......+.+.++-++....+++
T Consensus 13 ~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 13 AEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCH
Confidence 3444556666666666666677788999999999999999999999999865541 2233677889999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 028333 194 ERAARFYDKYISRLE 208 (210)
Q Consensus 194 ~~A~~~~~~al~~~~ 208 (210)
.....+..++-...+
T Consensus 90 ~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 90 SHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877654
No 219
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0067 Score=45.28 Aligned_cols=86 Identities=22% Similarity=0.219 Sum_probs=71.3
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
+..+++.|.+++...+. -+.-+.+-+.+|++..+++.......+++++.+. .....+.
T Consensus 26 y~~ai~~y~raI~~nP~----------------~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h~f 83 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPT----------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAHYF 83 (284)
T ss_pred hchHHHHHHHHHhcCCC----------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHHHH
Confidence 55666778777776553 1223567899999999999999999999998665 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 143 LGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+|.+......|+.|+..++++..+.+..
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998877654
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.72 E-value=0.033 Score=40.19 Aligned_cols=94 Identities=29% Similarity=0.397 Sum_probs=69.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHH
Q 028333 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA 184 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg 184 (210)
++...++++.|...+.+++...+. .......+...+..+...++++.|+..+.+++... +. ....+..++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLN------PDDDAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------cccchHHHHHhh
Confidence 788888999999988888552210 12244555666666778888888888888887775 33 467788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 185 DCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 185 ~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.++...++++.|...+..++...+
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhCc
Confidence 888888888888888888877654
No 221
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.00051 Score=53.55 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.++.-....+.-.+..|.++.|++.|.+++.+.+. .+..+...+.++..++....|+..+..++++. +
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------~ 179 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------P 179 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccC------c
Confidence 33444455677788899999999999999996554 78889999999999999999999999999886 5
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
..+..|--.|.....+|++++|...+..+.++
T Consensus 180 Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 180 DSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 56677888899999999999999999988764
No 222
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.72 E-value=0.0036 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
++++++|.++...|++++|+..|++.++..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 367888999999999999999999887654
No 223
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.028 Score=47.75 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+++.|.-.+...+|..++++|...+....+-.....-+....++..||..+.+.++|.+++++|-+.. +...-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------~~~~l 429 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------RQSPL 429 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------cccHH
Confidence 457788888999999999999999998776644444457788899999999999999999999997664 33444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+...+-.+....|+.++|+.+........
T Consensus 430 ~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 430 CQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 55555556666788899999887665543
No 224
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.68 E-value=0.021 Score=50.17 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
..+..+...|...|++++|+..|++.... +-.+ ...++..+..++...|++++|...+...
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 35666777777788888887777765431 1111 1224455555555555555555555444
No 225
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.016 Score=45.42 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 130 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 130 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
-+.+...+..+-.-|+-|+.-++|..|...|.++|+. +..|...++.+|.|.|.|...+|+|..|+.-+.+++.+-+
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P 150 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP 150 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3566777888888999999999999999999999754 4667778999999999999999999999999999987654
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.65 E-value=0.015 Score=48.55 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 190 (210)
.+.+.|.+.........|+ ....+...|+.+...|+.++|++.|++++....+ -......+++.+|.++..+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHH
Confidence 3455566666666654443 5667888999999999999999999999853322 1133557899999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 028333 191 GDLERAARFYDKYISR 206 (210)
Q Consensus 191 g~~~~A~~~~~~al~~ 206 (210)
.+|++|.++|.+..+.
T Consensus 319 ~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKE 334 (468)
T ss_pred chHHHHHHHHHHHHhc
Confidence 9999999999988763
No 227
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.62 E-value=0.019 Score=48.94 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=64.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 185 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 185 (210)
+-....+++.|...+.++-..+. ....++.-+..-..+++.++|+..++++++.+ +.....|..+|.
T Consensus 627 le~en~e~eraR~llakar~~sg-------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------p~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISG-------TERVWMKSANLERYLDNVEEALRLLEEALKSF------PDFHKLWLMLGQ 693 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCC-------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------CchHHHHHHHhH
Confidence 34445556666666666555322 34456666666677888888888888888876 777788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhc
Q 028333 186 CYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 186 ~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++..+++.+.|.+.|...+...+
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999988887776554
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.57 E-value=0.11 Score=40.38 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=69.3
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-h---CCC----cch
Q 028333 108 LRNQDLEKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER-E---GEY----SGS 176 (210)
Q Consensus 108 ~~~~~~~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~-~---~~~----~~~ 176 (210)
..+|+++.|..++.|+-.+..... .....+..+++.|......+ +++.|..+++++.++... . ... ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467899999999999988774221 22346779999999999999 999999999999999644 1 111 135
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 028333 177 TEAYGAIADCYTELGDLERAAR 198 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~ 198 (210)
..++..++.+|...+.++...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH
Confidence 6678899999999888754444
No 229
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.51 E-value=0.061 Score=35.33 Aligned_cols=105 Identities=11% Similarity=0.060 Sum_probs=67.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH-hCCCcchH
Q 028333 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER-EGEYSGST 177 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~-~~~~~~~~ 177 (210)
.|..++..|++-+|++..++.+....+-.+ .+....--|.++.. ..+.+-=..|+.-+++-..+ ..-.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~---~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES---SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc---hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 366788999999999999998886554222 22444555666654 33444333344433333322 11225567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
..++.+|.-+.....|+++....++++.+..+|
T Consensus 79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~pd 111 (111)
T PF04781_consen 79 HSLFELASQLGSVKYYKKAVKKAKRGLSVTNPD 111 (111)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCC
Confidence 888888887777778888888888888776543
No 230
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.48 E-value=0.031 Score=49.15 Aligned_cols=95 Identities=9% Similarity=0.004 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+..+...|...|+.++|++.|++.... +..+ ...++..+-.++...|+.++|..+|+...+.. +. .....
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---g~-~p~~~ 463 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAE----GVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH---RI-KPRAM 463 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CC-CCCcc
Confidence 4555666677777777777777665442 1111 23345555556666666666666666654321 11 11234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 179 AYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
.|..+...|...|+.++|.+.+++
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHH
Confidence 455566666666666666665544
No 231
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.48 E-value=0.061 Score=42.55 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=70.0
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
++.+++.|.+++...+. ......+.|..|+.++.|..|..-+..|+.+.+. ...+|..
T Consensus 113 y~EAIDCYs~~ia~~P~----------------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYSR 170 (536)
T KOG4648|consen 113 YEEAIDCYSTAIAVYPH----------------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYSR 170 (536)
T ss_pred hhHHHHHhhhhhccCCC----------------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHHH
Confidence 67788888888876553 1224577899999999999999999999998776 7788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 143 LGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.|.+-..+|...+|...++.++++.
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 9999999999999999999998875
No 232
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.44 E-value=0.047 Score=47.19 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
...+...|..+...++-++|.....++-.+.+- .+..++-.|.++..+|+..+|...|..|+.+. |+.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld------P~h 717 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASVYYLRGLLLEVKGQLEEAKEAFLVALALD------PDH 717 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC------CCC
Confidence 345667788899999999998888888886544 78899999999999999999999999998886 777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhhc
Q 028333 177 TEAYGAIADCYTELGDLERAAR--FYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~--~~~~al~~~~ 208 (210)
..+...+|.++.+.|+...|.. ....++.+-+
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 7889999999999999998888 8888877654
No 233
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.11 Score=42.94 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
....++.+++..|...+.++++.+|.....+.++++..-+.....+-.+.-+|.+....|+..++.....-+++.+++..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 34456667888899999999999999999999999977666666777888999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 028333 172 EYSGSTEAYGAIADCYTELGD--LERAARFYD 201 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~ 201 (210)
|.+..-.....+-.+|...|+ -+...+.|.
T Consensus 520 Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 520 DIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred CchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 888777778888888888888 555555443
No 234
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.43 E-value=0.017 Score=51.80 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
++....++...+.|++|+..|++.-.-+ -+...--++.+.+|.+...+-.-..--+.|.+|+.....+-+.++.+--
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESF---PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE 554 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcC---CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH
Confidence 4556677888888888888888765533 3344455678888888776443333336777787777777777887888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|...|.+|..+|++++-+++|..|++.+++
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987754
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.41 E-value=0.038 Score=42.98 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=41.3
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 187 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 187 (210)
..+..+.|-..|.+|.+ ........|...|..-+. .++.+.|...|+.+++.. +.....+..-...+
T Consensus 13 r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f------~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF------PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH------TT-HHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
Confidence 33345555555555542 111123344445555333 444444666666666554 33344444444555
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 028333 188 TELGDLERAARFYDKYISR 206 (210)
Q Consensus 188 ~~~g~~~~A~~~~~~al~~ 206 (210)
...|+.+.|...|++++..
T Consensus 81 ~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS 99 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh
Confidence 5566666666666666543
No 236
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.40 E-value=0.03 Score=47.77 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+++..+..-..+++.++|+..++++++.++. -...+.-+|.++-+.++.+.|.+.|...++.. |...-
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c------P~~ip 720 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKC------PNSIP 720 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccC------CCCch
Confidence 4555566677788999999999999987665 67788899999999999999999999887665 55666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.+..++.+-...|+.-+|...++++.-.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 7777777777777777777777776543
No 237
>PLN03077 Protein ECB2; Provisional
Probab=96.39 E-value=0.049 Score=49.05 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+...|...|+.++|+..|++..+. +..+ ...++..+-.++...|+.++|..+|++..+.. +. ...
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi-~P~ 624 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---SI-TPN 624 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---CC-CCc
Confidence 445677788889999999999999886652 2222 23345556667888999999999999875332 22 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
...|..+...+...|++++|.+.+++.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 478899999999999999999998864
No 238
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.30 E-value=0.38 Score=37.72 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
...+.-+.++..+|.+|-..++|..|...+...-.-. .+-.+.......+..+|.+|...++..+|..+..++--....
T Consensus 97 sfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 97 SFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 3445566678999999999999999887663221111 111122334557788999999999999999998887544433
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
..+.......-..-|++....++|-+|...|-+
T Consensus 177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455567777778888777776644
No 239
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.2 Score=41.51 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q 028333 93 KKEELLSRLKTGKN-FLRNQDLEKAFTEFKAALELAQNVKDP-IEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER 169 (210)
Q Consensus 93 ~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~l~~~~~~~-~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~ 169 (210)
...++...+.+|.+ +...++++.|..++++|+.+.+.++.. .....++.-++.+|.... .++.+...+.+++++.+.
T Consensus 42 ~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~ 121 (629)
T KOG2300|consen 42 FLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS 121 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 34577788888864 667999999999999999999988766 456678888999998876 889999999999999753
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
.. -+.-...+.++.++.-..|+..|.+.+.
T Consensus 122 ~p--~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 122 VP--YWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred Cc--hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 22 3345678889999999999999988753
No 240
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.17 E-value=0.52 Score=37.93 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
-..++..-+..-.++|+++.|-.|..++-+..+. + .-....-.+.....+||++.|.....+.++.. +.
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~---~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~------pr 185 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD---D--TLAVELTRARLLLNRRDYPAARENVDQLLEMT------PR 185 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC---c--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC------cC
Confidence 3445666778888999999999999998885332 1 33355667888899999999999999998775 67
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
...+..-.-.+|...|++........+.-
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77888999999999999988887776543
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.3 Score=38.72 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=64.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 182 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 182 (210)
.+......|.|++|.+..++++++.+. ...+.+..+.++...++..++.++..+.-..=+. ..-....-|..
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH 252 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWH 252 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHH
Confidence 455566778888888888888886554 5566777788888888888887776655222110 00113345777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 028333 183 IADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 183 lg~~y~~~g~~~~A~~~~~~al 204 (210)
.|.+|.+-++|+.|++.|++-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
Confidence 8888888889999988887543
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.14 E-value=0.2 Score=36.01 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+...|..+...+++..++..+.+++..... ........+. ++...+++++|...+++++.... .......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~ 168 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPD------PDLAEALLALGALYELGDYEEALELYEKALELDP---ELNELAE 168 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCC------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CccchHH
Confidence 344455555555555555555555543222 1122233333 66777777777777777744210 0123555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+...+..+...++++.|+..+.+++...+
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 566666666667777777777777766544
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.00 E-value=0.22 Score=41.33 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhc-CC------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333 113 LEKAFTEFKAALELAQNV-KD------------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 113 ~~~A~~~~~~al~l~~~~-~~------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
..+|..+|+++++.++.. +. ......+...+|.|..++|+.++|++.++..++... .
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~ 291 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----N 291 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----c
Confidence 567777777777766542 11 111133557899999999999999999999987652 1
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 174 SGSTEAYGAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
.....++.++-.++.+++.|.++...+.+.=
T Consensus 292 ~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 292 LDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred cchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 2356789999999999999999988887754
No 244
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.97 E-value=0.012 Score=28.32 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.++..+|.++...+++++|..++++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678888888889999999888888765
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.16 Score=35.13 Aligned_cols=74 Identities=23% Similarity=0.197 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS 174 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~ 174 (210)
...+...++..+...|+++.|+..+.+++.+.+- .-.++..+-.+|...|+...|+..|++..+...+ .+..|
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPY------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3445667888899999999999999999997544 5668888999999999999999999999877763 45544
Q ss_pred c
Q 028333 175 G 175 (210)
Q Consensus 175 ~ 175 (210)
.
T Consensus 135 s 135 (146)
T PF03704_consen 135 S 135 (146)
T ss_dssp -
T ss_pred C
Confidence 4
No 246
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.28 Score=37.49 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 151 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.+..|.-+|++.-+- .+........++.|+..+|++++|...++.+++...+
T Consensus 187 ek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred hhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 3456666666555221 2455677888888999999999999998888875443
No 247
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.89 E-value=0.029 Score=31.75 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.++.++..+++.|+|++|..+.+..+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45666666666666666666666666653
No 248
>PRK10941 hypothetical protein; Provisional
Probab=95.87 E-value=0.12 Score=39.95 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
+.......+.++=.+|...++++.|+.+.+..+.+. |..+.-+...|.+|..+|.+..|..-++..++..++|
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFD------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 445567788999999999999999999999999987 6667778889999999999999999999998877654
No 249
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.42 Score=37.08 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
....+..++|..|.+.++.+.+.+...+.+.-+-..+-.....-+-..+|.+|..+.=.++.++..+ .+.++.+|+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~---~~iEkGgDWe 189 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVAD---DIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHH---HHHHhCCCHH
Confidence 4556788999999999999999999988888777766666555566677887776554444444433 3344555544
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
..-..-...|.-.....++.+|...+-.++..+
T Consensus 190 RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 190 RRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 333333444555566678888887776666544
No 250
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.78 E-value=0.019 Score=29.99 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
++|..+|.+-.+.++|++|+.-|++|+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666666666654
No 251
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.73 E-value=0.11 Score=44.47 Aligned_cols=100 Identities=24% Similarity=0.244 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLR-----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQI 166 (210)
Q Consensus 97 ~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~ 166 (210)
..+...+|.+|+. ..|.++|+.+++.+..-..+. .......+.+.+|.+|.... +++.|+.++.++..
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~- 321 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE- 321 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-
Confidence 4455667777764 478999999999998821110 01113446788888888743 67888888888843
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 028333 167 SEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS 205 (210)
Q Consensus 167 ~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~ 205 (210)
.+..++.+.+|.+|..-. +..+|.++|..|..
T Consensus 322 -------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 322 -------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred -------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 334577888888887654 56788888887764
No 252
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.73 E-value=0.18 Score=44.46 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHhCCCcch----------HHHH
Q 028333 115 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL----QISEREGEYSGS----------TEAY 180 (210)
Q Consensus 115 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~----------~~~~ 180 (210)
++...+.+|+++++. +|....-..|++.+.-....+|.+.|++||+++- ++.+-+.+.+.. ...|
T Consensus 837 Qs~g~w~eA~eiAE~-~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAET-KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred HhcccHHHHHHHHhh-ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence 344445566666665 4555567788999999999999999999999862 222222222322 2455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 181 GAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.-.|......|+.+-|+.+|..|-+.+
T Consensus 916 ~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 668888889999999999999987754
No 253
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.33 Score=37.14 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q 028333 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 192 (210)
Q Consensus 113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 192 (210)
+..|.-.|++.-+ + ....+..+++.+.+++.+++|++|...++.++.-. ...++.+.|+-.+-...|.
T Consensus 189 ~qdAfyifeE~s~---k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 189 IQDAFYIFEELSE---K---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------AKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhHHHHHHHHhc---c---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCC
Confidence 4455545544322 2 33356788999999999999999999999997653 5557888888888888888
Q ss_pred HHHHHHHHHHH
Q 028333 193 LERAARFYDKY 203 (210)
Q Consensus 193 ~~~A~~~~~~a 203 (210)
..++...+-.-
T Consensus 257 d~~~~~r~l~Q 267 (299)
T KOG3081|consen 257 DAEVTERNLSQ 267 (299)
T ss_pred ChHHHHHHHHH
Confidence 77666655433
No 254
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.61 E-value=0.22 Score=30.54 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..-|.=++...+.++|+..++++++-. .+.+....++-.+..+|.+.|+|.+++++--+-+++.+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~---~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKI---TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555668889999999999997654 34456677888899999999999999999877777654
No 255
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.57 E-value=0.34 Score=37.67 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=73.0
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 99 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 99 ~~~~~g~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
++...|..-+. .++.+.|...|+.+++.+.. ....+..........++.+.|...|++++... .......
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~ 107 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISSL---PKEKQSK 107 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHH
Confidence 45566777555 67777799999999997765 44445555566778999999999999997553 1111134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..|......-...|+.+......+++.+.++.
T Consensus 108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 57777888888889999999999999887754
No 256
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.45 E-value=0.051 Score=28.38 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
++..+|.+....++|++|+.-|++++++.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777654
No 257
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.44 E-value=0.17 Score=28.62 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+++.+|..+..+|+|++|..+.+.++++-|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555554433
No 258
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.18 Score=39.03 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhcc
Q 028333 133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISRLES 209 (210)
Q Consensus 133 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~ 209 (210)
.+..+.-+.-||.+|+.+|++..|..-|.+++++. +.+++.+..+|.++.-+. ...++...+++++..-+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~ 225 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA 225 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc
Confidence 44467788999999999999999999999999997 777888888888876653 467888999999876554
No 259
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.86 Score=35.96 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+..++|..|++.|+-+.|.+.+.+..+-.-..|......-....+|..|....=..+. .++|-.+.++.+|+...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~---iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES---IEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH---HHHHHHHHHhCCChhhh
Confidence 446789999999999999999999998887777777766676777888888755433333 34444445556665544
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
-..-..-|.-.....+|++|...|-.++..+
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 4445556666667789999998887776654
No 260
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.32 E-value=0.51 Score=31.58 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=70.5
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH---H--HH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI---E--EK 137 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~---~--~~ 137 (210)
++.+...+.+++..... ++..+ ..+..--++.+.-.++..+..+|+|++++....+++..+.+.+.-. . -.
T Consensus 25 ~~eAa~s~r~AM~~srt---iP~eE-aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 25 YEEAAASCRKAMEVSRT---IPAEE-AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHHHHHHHHHHHHHHTT---S-TTS----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CChHh-hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 34444556666665432 11111 1455556777788899999999999999999999999998754321 1 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
.+.++.+.++-..|..++|+..|+++-++..+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 366788999999999999999999998887543
No 261
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.25 E-value=1.8 Score=37.59 Aligned_cols=111 Identities=10% Similarity=0.050 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...+.+-++.++...+... |.....+.++.++..+.........+-....+...+|+..|++.++.....+...++...
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 4555666799999888887 999999999999886555443333332233333348999999999999999987777666
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
...+....|.+....+..+.+++..+++....
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence 77777888888888888888988888886543
No 262
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.37 Score=39.01 Aligned_cols=109 Identities=11% Similarity=-0.042 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.++.+...|-..++...--..+..-+..+.-..|....+...+.+=+.|...+.|++|-....++.-- +.......+.
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p--e~~snne~AR 248 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP--EAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc--cccccHHHHH
Confidence 45556666666666555444455544444333466667777777788888888888887777666311 1111124566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+.+|.+-.-+++|..|.+++-+|+...++
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 6788888888888888888888888776553
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.19 E-value=0.18 Score=43.14 Aligned_cols=93 Identities=29% Similarity=0.400 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHh
Q 028333 99 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE 170 (210)
Q Consensus 99 ~~~~~g~~~~~~~-----~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~ 170 (210)
+.+.+|.+|.... +++.|..+|.++-+.- ...+.+.+|.++.... ++.+|..+|..|.+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~----- 356 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK----- 356 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence 3566888888743 7788999999887732 4567888999988755 67899999999932
Q ss_pred CCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 028333 171 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~ 207 (210)
.+...+.+++|.||.. .-+.++|..+|.++-+.-
T Consensus 357 ---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 357 ---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 5667899999999976 247899999999987653
No 264
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.15 E-value=0.44 Score=36.32 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
........+|..|+..|+|++|..+|+.+....++-+=.......+..+-.|+...|+.+..+.+.-+.
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344456789999999999999999999998888876666667778889999999999999877766443
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.13 E-value=0.35 Score=36.01 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...+..++..|..|-..|-..-|.-.|.+++.+. |..+.+++.+|.-+...|+|+-|.+.|+..+++.+
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 3356677788888888888888888899998876 88899999999999999999999999998887654
No 266
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.12 E-value=0.15 Score=46.73 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCC
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER--EGE 172 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~ 172 (210)
+..+..++.++...+++++|+.+-.++.-+.++. .+++.....+.+++...+..++...|+..+.++..+..- ..+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 3455778999999999999999999999988875 467778889999999999999999999999998776532 235
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.|..+....+++.++...++++.|+.+.+.|.++.
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 67777888999999999999999999999998743
No 267
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.10 E-value=0.06 Score=45.45 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=77.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183 (210)
Q Consensus 104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 183 (210)
|..+...|+...|+..+..|+...+. .......+++.+....+-...|-..+.+++.+. ...+..++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~-----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPL-----QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChh-----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhc
Confidence 55566789999999999999886543 233466789999988888888999999998875 3345678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 184 ADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 184 g~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|+.|..+.+.++|++.+++|++..++
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999987654
No 268
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.10 E-value=0.78 Score=35.65 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-------KYREAIKYHSMVLQ 165 (210)
Q Consensus 97 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-------~~~~A~~~~~~al~ 165 (210)
..+.+.+|..|.. ..++.+|..+|.++.... +... ..+...+|..|..-. +..+|..+|.++-.
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~ 183 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE 183 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence 3467778988887 559999999999998842 2211 445777888877642 23368888887744
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333 166 ISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 206 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 206 (210)
. ....+..++|.+|.. ..++++|..||.+|-+.
T Consensus 184 ~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 184 L--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred h--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 3 356889999998865 34899999999998653
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=0.69 Score=33.76 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCHH---HHHHHHHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 101 LKTGKNFLRNQDLE---KAFTEFKAALELAQNV---------------KDPIEEKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 101 ~~~g~~~~~~~~~~---~A~~~~~~al~l~~~~---------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
...|+-|++..+.+ .|-..|.++++....- +.+..-..+...++..+...+++++|...++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33466666655554 5555666666554321 11222233445677888899999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
++.... |....+.+-.++|.+...+|++++|+..++..
T Consensus 115 ~l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 115 ALAQTK---DENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 975543 33556778899999999999999999887643
No 270
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.00 E-value=0.96 Score=32.97 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=71.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 182 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 182 (210)
++....+.-|.+.......+.+++++. ..-.+.+|......|++.+|...|++++. +-.-..+..+..
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApT-------vqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLg 129 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPT-------VQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLG 129 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchh-------HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHH
Confidence 344455566777777777777776664 34557789999999999999999999953 223446678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 183 IADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 183 lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
++...+..+++..|...+++..+..
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcC
Confidence 9999999999999999999876653
No 271
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.98 E-value=0.42 Score=38.97 Aligned_cols=102 Identities=19% Similarity=0.094 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---CC----hH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV---KD----PI-----EEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~---~~----~~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
...+.+.-|..++.+++|..|...|..+++++.+. +. .. ......-.+..||...++.+-|+....+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 44556777888999999999999999999999762 11 11 11224457899999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
|-+. |....-+...|.|+..+.+|.+|...+.-+
T Consensus 255 I~ln------P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 255 INLN------PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhcC------cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 656667888999999999999998776544
No 272
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.11 Score=44.33 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+...+.+-+.-++...+|..+++.|+.+++...........+....+++.||..+.+.++|.+++++|-+.-
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 344666778888999999999999999998875444444568889999999999999999999999996643
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.77 E-value=2.2 Score=38.06 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=77.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Q 028333 102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 181 (210)
Q Consensus 102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 181 (210)
-.|.+-...++.++|++..+.++...+...... ...++..+|.+..-+|++++|..+..++.++++..+.......+..
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 347788889999999999999999877643333 4568889999999999999999999999999998887777778888
Q ss_pred HHHHHHHHcCCH
Q 028333 182 AIADCYTELGDL 193 (210)
Q Consensus 182 ~lg~~y~~~g~~ 193 (210)
..+.+..++|+-
T Consensus 542 ~~s~il~~qGq~ 553 (894)
T COG2909 542 QQSEILEAQGQV 553 (894)
T ss_pred HHHHHHHHhhHH
Confidence 899999999943
No 274
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.55 E-value=0.19 Score=44.40 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=55.3
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 188 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 188 (210)
..+++.+|+....+.+.-.++ ...+...-|.+..++|.+++|..+++.. ... ....-..+-.+-.||.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~-----~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEAL-YGL-----KGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC-----CCCchHHHHHHHHHHH
Confidence 445666776666666553332 4445555677777888888888555433 221 1123355667777888
Q ss_pred HcCCHHHHHHHHHHHHHhhc
Q 028333 189 ELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 189 ~~g~~~~A~~~~~~al~~~~ 208 (210)
.+|++++|...|++++...+
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCC
Confidence 88888888888888876654
No 275
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.45 E-value=0.22 Score=41.70 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=75.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
....|+-.+.......|+..|.+++...+. ....+.+.+.+++++ |+--.|+.-...|+++. +..
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln------~s~ 444 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLN------PSI 444 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCC------hHH
Confidence 444565566667788899999999886554 667788888888774 46667888888887764 667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+++.|++++.+++++.+|+.+...+...++
T Consensus 445 ~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 445 QKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 78999999999999999999999876665554
No 276
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.44 E-value=0.067 Score=25.23 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 028333 179 AYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555556666666665555543
No 277
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.43 E-value=1.2 Score=38.38 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH----------------------------------
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR---------------------------------- 141 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~---------------------------------- 141 (210)
-...+..+|..|...|.+++|-..|++++.-.-++.|.....++|.
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 4456788999999999999999999988865444444322222221
Q ss_pred -------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH
Q 028333 142 -------------------------GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 196 (210)
Q Consensus 142 -------------------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 196 (210)
.+-++-...|++.+-+..|.+|++......-.-....++...|..|...|+.+.|
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 1111222334455556666666544321111112446788899999999999999
Q ss_pred HHHHHHHHHh
Q 028333 197 ARFYDKYISR 206 (210)
Q Consensus 197 ~~~~~~al~~ 206 (210)
...|++|.+.
T Consensus 407 Rvifeka~~V 416 (835)
T KOG2047|consen 407 RVIFEKATKV 416 (835)
T ss_pred HHHHHHhhcC
Confidence 9999998763
No 278
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.43 E-value=0.24 Score=33.88 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
-++.+.++.-++.+++|++|+.+.+..++
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444455555555555555555544444
No 279
>PLN03077 Protein ECB2; Provisional
Probab=94.40 E-value=0.57 Score=42.36 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------H---
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL------------Q--- 165 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------~--- 165 (210)
..+-..+...|++++|..+|+...+. .+..+ ....|..+...+.+.|++++|.+.+++.- .
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEK---YSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHH---hCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 33345677788888888888876532 22222 23567778888888888888888877631 0
Q ss_pred ------H----HHH-hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 166 ------I----SER-EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 166 ------~----~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+ .++ ..-.|.....|..++.+|...|++++|.+..+...+
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 000 111244456677888899999999998888876654
No 280
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.36 E-value=0.29 Score=42.75 Aligned_cols=100 Identities=30% Similarity=0.429 Sum_probs=65.0
Q ss_pred HHHHHHhCCCHHHHHHHHH------HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------
Q 028333 103 TGKNFLRNQDLEKAFTEFK------AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV------------- 163 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~------~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------- 163 (210)
.|..|-...++++|+++|+ +++++++- ..+..-...--.+|.-.-+.|+++.|+..|-++
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 4666777788999998875 45665542 233333344456677777788888877666443
Q ss_pred ------HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 164 ------LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 164 ------l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
+.+.....+.......|-.++.-|...|+|+.|.+.|.++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 3333333344444455777889999999999998887654
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=2 Score=33.52 Aligned_cols=101 Identities=23% Similarity=0.226 Sum_probs=76.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VL 164 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~---------------al 164 (210)
.+..+.-....+++..|...+..++...++ ...+...++.+|...|+.+.|...+.. -+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344566778899999999999999998776 467788899999999999877766654 13
Q ss_pred HHHHHh-------------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 165 QISERE-------------GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 165 ~~~~~~-------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
++..+. ...+....+-+.+|..|...|+.+.|.+.+-..+..
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333221 223556678889999999999999999988655543
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.17 E-value=1.3 Score=35.23 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh-
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE- 170 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~- 170 (210)
....+..+...+.+....|+++.|...+.++......... ..+......+......|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~--~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES--LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 4445667888999999999999999999887775432111 1355667778888899999999999988887 22211
Q ss_pred --------------------------CCCcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhc
Q 028333 171 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE 208 (210)
Q Consensus 171 --------------------------~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~ 208 (210)
......+.++..+|.-.... ++.+.+...|.++.+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 11123566788888888777 889999999999987654
No 283
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.15 E-value=1.9 Score=40.01 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=94.6
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+.......+.+++...+..++...|...+.++..+..-. + +.+..+....+++.++...++++.|+++.+.|....++
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 445567788889999999999999999998888765432 2 34555667789999999999999999999999997766
Q ss_pred hCCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 170 EGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 170 ~~~~--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.... ...+.++..+++.+..++++..|....+....++.
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 5332 23677899999999999999999999988887764
No 284
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.13 E-value=0.2 Score=39.20 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+.-....|+.++|...|+.|+.++ +....++..+|......++.-+|-.+|-+|+.+.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlala------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALA------PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcC------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 3333445666666666666666665 5556666666666666666666666666666544
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.13 E-value=2.1 Score=33.20 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh---c-CC----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 94 KEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN---V-KD----PIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~---~-~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
...+..+++.|...+..+ +++.|..++++++++++. . .. ......++..++.+|...+.++.... ..+++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l 110 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHH
Confidence 345667899999999999 999999999999999644 1 11 13456688899999999888764333 33344
Q ss_pred HHHH-HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 165 QISE-REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+..+ +.++++... +..+-.+.. .++.+.+.+.+.+++.-.
T Consensus 111 ~~l~~e~~~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 111 RLLESEYGNKPEVF--LLKLEILLK-SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHhCCCCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence 4432 233333222 233333333 677788877777776543
No 286
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.10 E-value=0.085 Score=24.85 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHS 161 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~ 161 (210)
+..++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777766554
No 287
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.07 E-value=2.1 Score=40.22 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-------- 171 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-------- 171 (210)
+..+..+|-..+++++|.++++..++-+.+ ....+..+|...+.+++-+.|...+++|++...+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 444555555666666666666555553332 333444555555555555555555555554442200
Q ss_pred ----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 172 ----------------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 172 ----------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
..|.+.+.|.-..+.-...|+.+.+...|+++++
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 1144445555555555556666666666666654
No 288
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.01 E-value=2.2 Score=32.87 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCcchH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.++.-+..+...+++..|.+...-.++.....+.+.. .....++..+....+.-+ .-..+.+++++..+..+...+.+
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~-~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD-EESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 4566678888999999999988877887777544433 224467777776665433 46677788888884455556788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 028333 178 EAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
..+..+|..|.+.|++.+|..+|-
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999999999999999884
No 289
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.94 E-value=0.16 Score=39.70 Aligned_cols=81 Identities=30% Similarity=0.283 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
...++....+.|.-....|+.++|...|+.|+.++++ .+.++..+|...-.-++.-+|-.+|-+|+.+.
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis----- 180 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTIS----- 180 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC-----
Confidence 3456667778888888999999999999999999887 78889999999988899999999999998775
Q ss_pred CcchHHHHHHHHH
Q 028333 173 YSGSTEAYGAIAD 185 (210)
Q Consensus 173 ~~~~~~~~~~lg~ 185 (210)
+....++.+.++
T Consensus 181 -P~nseALvnR~R 192 (472)
T KOG3824|consen 181 -PGNSEALVNRAR 192 (472)
T ss_pred -CCchHHHhhhhc
Confidence 555555555443
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.91 E-value=1.6 Score=30.88 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
-...+......-...++.+.+...+...--+-++ ....-..-|+.+...|++.+|+..|+....- .+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~ 76 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APG 76 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCC
Confidence 3445667777777888888888777655444343 5666777899999999999999999987332 356
Q ss_pred hHHHHHHHHHHHHHcCCHH
Q 028333 176 STEAYGAIADCYTELGDLE 194 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~ 194 (210)
.+.+---++.|+..+||.+
T Consensus 77 ~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPS 95 (160)
T ss_pred ChHHHHHHHHHHHHcCChH
Confidence 6677778888988888864
No 291
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=2.7 Score=33.52 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333 110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 189 (210)
Q Consensus 110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 189 (210)
-+..+.-+..+...++-+.+-+-.......-..+...|+..++|.+|+......++..++.+|.......+..-..+|+.
T Consensus 101 ~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~ 180 (411)
T KOG1463|consen 101 DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHA 180 (411)
T ss_pred CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHH
Confidence 34455666677777776666444454555667889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 028333 190 LGDLERAARFYDKYIS 205 (210)
Q Consensus 190 ~g~~~~A~~~~~~al~ 205 (210)
+.+..+|...+..|..
T Consensus 181 l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 181 LRNLPKAKASLTSART 196 (411)
T ss_pred HhcchhHHHHHHHHHH
Confidence 9999999988876644
No 292
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.78 E-value=0.061 Score=44.15 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=74.1
Q ss_pred HHHHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 028333 61 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 140 (210)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 140 (210)
..+..+++.|.+++..-+. .+...-+.+..+...++|..|+.-+.+++++.+. ...+|
T Consensus 18 ~~fd~avdlysKaI~ldpn----------------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K~Y 75 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPN----------------CAIYFANRALAHLKVESFGGALHDALKAIELDPT------YIKAY 75 (476)
T ss_pred chHHHHHHHHHHHHhcCCc----------------ceeeechhhhhheeechhhhHHHHHHhhhhcCch------hhhee
Confidence 3456677778888776543 1222344567888999999999999999996544 88899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 186 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 186 (210)
+..|.++...+.+.+|+..|++...+. |....+...+-.|
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~------Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVKKLA------PNDPDATRKIDEC 115 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhhhcC------cCcHHHHHHHHHH
Confidence 999999999999999999999998776 5555555555444
No 293
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.32 Score=36.84 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSG----------STEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~----------~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
...++..-|+-++..|+|.+|...|..|+-..+.+ ...|+ ....+.|.+.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 45578888999999999999999999998776553 12221 3346899999999999999999999888
Q ss_pred HHhhc
Q 028333 204 ISRLE 208 (210)
Q Consensus 204 l~~~~ 208 (210)
+...+
T Consensus 257 L~~~~ 261 (329)
T KOG0545|consen 257 LRHHP 261 (329)
T ss_pred HhcCC
Confidence 77554
No 294
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=1.3 Score=37.17 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=64.9
Q ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 028333 128 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYIS 205 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~ 205 (210)
+...|.....--+.-+|.+...+|+...|..+|+..++-.. ...+.+..+.+++.+|..|..+|. ..++..++.+|.+
T Consensus 440 ~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 440 PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 34445555666677889999999999999999998875433 345566788999999999999999 9999999999987
Q ss_pred hh
Q 028333 206 RL 207 (210)
Q Consensus 206 ~~ 207 (210)
..
T Consensus 520 ~~ 521 (546)
T KOG3783|consen 520 YA 521 (546)
T ss_pred hc
Confidence 54
No 295
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.47 E-value=0.15 Score=38.19 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 147 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 147 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
....+|.+.|.+.+.+++.+. +.....|+++|....+.|+++.|...|++.+++-+.|
T Consensus 5 ~~~~~D~~aaaely~qal~la------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345678888888888888776 5667788888888888888888888888888776544
No 296
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.57 Score=38.02 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
+.+.++...+.+-.+|...+.|++|...-.++. .+........+..++++|.+..-+.+|..|.++|.+|+..+.
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 555667677778899999999999988776654 122223335788899999999999999999999999987764
No 297
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.42 E-value=1.2 Score=29.93 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
...+|...+..+++-.++-.|++|+.+.+++... .....+.+|++..+...||.+=.+.|++-|-+...
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3557888899999999999999999999887311 11234778999999999999999999998865543
No 298
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=1.6 Score=33.99 Aligned_cols=90 Identities=9% Similarity=0.058 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
+..+...-..+..++-++.+.+.++-.+..+.......+..|+|..|.+.+|-+.+.+...+.++-+-..+-.-..--+-
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k 158 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK 158 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence 33344444445566778888888887777666777899999999999999999999999999987775554444444455
Q ss_pred HHHHHHHHHc
Q 028333 181 GAIADCYTEL 190 (210)
Q Consensus 181 ~~lg~~y~~~ 190 (210)
..+|.+|..+
T Consensus 159 iRlg~~y~d~ 168 (412)
T COG5187 159 IRLGLIYGDR 168 (412)
T ss_pred HHHHHhhccH
Confidence 5666666543
No 299
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.39 E-value=2 Score=37.90 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhC-------------CCcchHHHH
Q 028333 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV------LQISEREG-------------EYSGSTEAY 180 (210)
Q Consensus 120 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~-------------~~~~~~~~~ 180 (210)
+.+++.+.+.+.|.......|..++.-|...|+|+.|.+.|.++ +.+..+.+ .+......|
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y 827 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY 827 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence 45666666666665555556677888888899999988877655 22222111 122344456
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 028333 181 GAIADCYTELGDLERAARFY 200 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~ 200 (210)
...+.-..+.|+|.+|.+.|
T Consensus 828 iakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhHHhHHhhcchhhhhhee
Confidence 66677777888888888766
No 300
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=3.4 Score=32.29 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.-..+..++++.|+|..|+....-.+...++.+|.+.....|..-..+|++..+..++...+..|..
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 4456788899999999999999999999999999999999999999999999999888887766644
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.98 E-value=1.4 Score=32.40 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 199 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 199 (210)
.+...+.+|..|. ..|.++|+..+.+++++... +....++.+..|+.+|..+|+++.|--|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 4667777887666 77999999999999988743 2244678999999999999999998654
No 302
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.93 E-value=4.4 Score=33.12 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hCCCc
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER----EGEYS 174 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~ 174 (210)
++..+|..|..-|+.+.|++.|.++-+.|-+ .......+.|+=.+..-.|+|..-..+-.+|...... ....+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 5778999999999999999999998887765 3335566777777888899999888888888766311 11112
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
.. ....-|.+...+++|+.|..+|-.+
T Consensus 229 ~k--l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AK--LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23 3444555566677999999988654
No 303
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.70 E-value=1.1 Score=37.36 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=55.7
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 188 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 188 (210)
++++++.+-..|++.+.- .+....++...|..-..+|+.+.|...|+-|+.... .......+..--+.-.
T Consensus 449 qL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEF------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMPELLWKAYIDFEI 518 (677)
T ss_pred HHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHHHHHHhhhhhh
Confidence 455666666666666663 333666777777777788888888888877765431 1111222333334445
Q ss_pred HcCCHHHHHHHHHHHHHhhc
Q 028333 189 ELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 189 ~~g~~~~A~~~~~~al~~~~ 208 (210)
..|++++|...|++.++..+
T Consensus 519 ~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hcchHHHHHHHHHHHHHhcc
Confidence 67788888888887776543
No 304
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=0.98 Score=35.95 Aligned_cols=106 Identities=18% Similarity=0.053 Sum_probs=83.7
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+++-+.+..+....-..++.+|+.+.-...+++.+..... +.+.......-++......|-|++|....++++++.
T Consensus 130 L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~--dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-- 205 (491)
T KOG2610|consen 130 LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA--DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-- 205 (491)
T ss_pred HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC--CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--
Confidence 4455556667777778888899999999999999886432 455455555667888889999999999999999886
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
+....+.+..+.++...|+++++.++-.+.
T Consensus 206 ----~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 206 ----RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ----CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 566788899999999999999999876553
No 305
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.37 E-value=2.5 Score=29.00 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
....+++|++.....+ ..+.+..++..++ ...+...-+..++++..++..++|++|+.|.+..++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3356778888776544 5566667766654 12445566788999999999999999999999988764
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.23 E-value=0.78 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 028333 180 YGAIADCYTELGDLERAARF 199 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~ 199 (210)
++.+|..+..+|++++|++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444555555555555555
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.19 E-value=2.1 Score=33.14 Aligned_cols=109 Identities=7% Similarity=0.048 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
++-.+-.+++.+++|++-...|.+.+...++.--....-.+.+++-..-....+.+--..+|+..++..++..+......
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 45666778889999999999999888776652111111112222211111233344444555555555554444444455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
....+|.+|+..++|.+-.+...+.....
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 66789999999999888777766654443
No 308
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.19 E-value=0.46 Score=28.97 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 142 GLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.-|..-=..|+|++|+.+|..+++....
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3344455899999999999999988754
No 309
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=5.1 Score=31.95 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=73.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHH
Q 028333 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA 184 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg 184 (210)
+..+.++.++|+++.++..+.....+.+.........+|+++...||.+++.+.+...-.......+-+. .-..|+.++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 3445569999999999999988888777777778889999999999999999999988777666555444 333455555
Q ss_pred HH-HHHcCCHHHHHHHHHHHH
Q 028333 185 DC-YTELGDLERAARFYDKYI 204 (210)
Q Consensus 185 ~~-y~~~g~~~~A~~~~~~al 204 (210)
.- |...|++.....+.-+.+
T Consensus 164 sqYyk~~~d~a~yYr~~L~YL 184 (380)
T KOG2908|consen 164 SQYYKKIGDFASYYRHALLYL 184 (380)
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 54 455688876655544443
No 310
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.99 E-value=0.58 Score=28.62 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+..+...+.-.=..|+|++|+.+|+++++....
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 334455566667899999999999999888743
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.92 E-value=9.2 Score=34.43 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHH---------
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI--KYHSMV--------- 163 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~--~~~~~a--------- 163 (210)
..+.+...+|.+....|++++|..+...+.+++++.+.......+....+.+...+|+...|. .-|...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356678899999999999999999999999999998888777777777788888887322222 111111
Q ss_pred -----------------------------HHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 164 -----------------------------LQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 164 -----------------------------l~~~~~~~~~~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+++-......+. ....++.++.++...|+.++|....+......
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 000000000111 11223589999999999999999888776654
No 312
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.88 E-value=6.3 Score=37.36 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
...+|...|...+.+.+-+.|-..+.+|++-.++ .........-+..-++.||.+++...|+-.+....+
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 4446666777788888878888888888876654 223445555666667777777777777666555433
No 313
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.88 E-value=0.75 Score=37.60 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
+...+..++.-+|||..|++..+- +++.++ .+.+......++++|.+|+.+++|..|+..|...+-...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677889999999999987642 222211 123444666899999999999999999999999987765543
No 314
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.85 E-value=3.5 Score=33.45 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...++=..|....+|+.-+...+..-.+ +..+ -..........|.++.. .|+.++|+..+..++.-. ...
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~ 215 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENP 215 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCC
Confidence 3455566788888888877766554332 1111 22234456677888877 999999999999875432 245
Q ss_pred hHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhh
Q 028333 176 STEAYGAIADCYTEL---------GDLERAARFYDKYISRL 207 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~ 207 (210)
.++.+..+|.+|..+ ...++|+.+|.++.++-
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 678888899988652 24788999999987754
No 315
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=91.77 E-value=0.59 Score=35.78 Aligned_cols=61 Identities=15% Similarity=0.037 Sum_probs=54.1
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
..-....|.+...+|+-.++..+|...+..+.+..+..|+...+|+.|..||.+|.....+
T Consensus 51 s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 51 SDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred cccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 3445778999999999999999999888888888999999999999999999999988654
No 316
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.72 E-value=0.45 Score=25.70 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 181 GAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+++|..|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777766653
No 317
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.57 E-value=2.5 Score=35.33 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=65.3
Q ss_pred HHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHH---------------HHHHH--------------
Q 028333 95 EELLSRLKTG-KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA---------------ARGLG-------------- 144 (210)
Q Consensus 95 ~~~~~~~~~g-~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~---------------~~~lg-------------- 144 (210)
..+..+.+-+ ..-....+.+.+.+.|+.++++.++.+.+...... .--||
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence 3444554444 23445667777777777777766664433222111 11111
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 145 --ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 145 --~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.+-.++++++.....|++-++.. |....++...|..-..+|+.+.|...|+-|++.
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 11234555566666666665553 667788999999999999999999999988864
No 318
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.77 Score=36.42 Aligned_cols=107 Identities=7% Similarity=-0.074 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA 179 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~ 179 (210)
..+...|+..++|.+|+......+.-.++++|.......+..=.-+|....+..+|...+..|--.+...--+|. .+..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 446778999999999999999999999999999888888888888999999999998888877554433333332 4445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
-..-|..+..-.||.-|..||=+|.+-+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccc
Confidence 5566777777789999999998887644
No 319
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.46 E-value=0.16 Score=40.05 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+..+-..|.++..+++...|+.-+..++.+.+. .+.-|-..|.+...+|++++|..++..+.++.
T Consensus 147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 4445677899999999999999999999996554 66677788999999999999999999997764
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.43 E-value=0.58 Score=34.30 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 157 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 157 (210)
+...+.+|..| ...+.++|+..+.+++++... +....++.+..|+.+|+.++++++|-
T Consensus 141 ~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYY-TKRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44566667555 588999999999999998765 32335778999999999999999885
No 321
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=91.32 E-value=1.7 Score=36.83 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333 99 SRLKTGKNFL--RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 99 ~~~~~g~~~~--~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
++.++|.+-- ....-+.++..|.+|+..++..-+.. ...-|.++|..|+..++|.+|+.++-++-...+..+.....
T Consensus 279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD 357 (618)
T PF05053_consen 279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED 357 (618)
T ss_dssp HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence 4555555432 23345677899999999998864433 45567788999999999999999999998887665554444
Q ss_pred HHHHHH
Q 028333 177 TEAYGA 182 (210)
Q Consensus 177 ~~~~~~ 182 (210)
-.+|..
T Consensus 358 eEiYKE 363 (618)
T PF05053_consen 358 EEIYKE 363 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455444
No 322
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.16 E-value=0.43 Score=38.97 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISERE---GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+..++.+++..+|||..|+..++.. ++.++. .........++.+|-+|..+++|.+|++.|...+-..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888899999999999887644 221110 1122345679999999999999999999999887644
No 323
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.04 E-value=2.2 Score=35.33 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.+..-++.-|...+.+|+|.++.-|-.=..++++ .+.++.-+|.+.+..++|++|..++.+.-. ++..
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-------S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-----n~~~ 527 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-------SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-----NERM 527 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-----chhh
Confidence 3444455566778899999999887766666655 477899999999999999999999987621 2222
Q ss_pred chHHHHHHHHHHHH
Q 028333 175 GSTEAYGAIADCYT 188 (210)
Q Consensus 175 ~~~~~~~~lg~~y~ 188 (210)
..+.+...++.|+.
T Consensus 528 ~dskvqKAl~lCqK 541 (549)
T PF07079_consen 528 RDSKVQKALALCQK 541 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 324
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.03 E-value=3.4 Score=27.82 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 140 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+..+|....+.+++-.|+-.|++|+.+..+..... ......+|+|..+..+|+.+-.++|++.|-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35678888899999999999999998887763111 13345789999999999999999999877653
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.86 E-value=4.7 Score=29.12 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
..+.+..|.+..+.|+-..|+.+|.++-...+ .+. ..-.+...-+.++...|-|++-..-.+-. . .+..+.
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL---a--~d~n~m 165 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL---A--GDGNPM 165 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---c--CCCChh
Confidence 44678889999999999999999998655322 222 12345566677788888888654433321 1 223355
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
...+.-.+|..-.+-|++.+|..+|.+..+
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 677888899999999999999999987654
No 326
>PRK10941 hypothetical protein; Provisional
Probab=90.73 E-value=5.9 Score=30.71 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
...+.++=.+|...++++.|+...+..+.+.+. .+.-....|.+|.++|.+..|..-++..++..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 335577788899999999999999999998775 44556779999999999999999999998776
No 327
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=90.58 E-value=0.49 Score=36.20 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 152 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 152 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....|.+.+.+|+-.++..++......+....+..|+.+.+|+.|.-||.+|...+..
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 4677999999999999988888888889999999999999999999999999987654
No 328
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=8.2 Score=32.70 Aligned_cols=77 Identities=22% Similarity=0.092 Sum_probs=62.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQIS 167 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~ 167 (210)
++...+..-.+-+|.+...+|+-..|..+|...++-. .+..+++..+.+++.+|..|..++. ..++..++.+|-...
T Consensus 443 ~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 443 DDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 3445556566789999999999999999999888543 3345777788899999999999998 999999999995554
No 329
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.35 E-value=6.6 Score=35.28 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
.-.|....++|+.++|...++ ++.... .+ .-.++.-+-.+|..++++++|..+|+++.... |. -...
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le-~~~~~~---~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~------P~-eell 113 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLE-ALYGLK---GT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY------PS-EELL 113 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHh-hhccCC---CC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC------Cc-HHHH
Confidence 334666667777777764333 222111 11 23345566677777777777777777776554 33 3334
Q ss_pred HHHHHHHHHcCCHHHHH
Q 028333 181 GAIADCYTELGDLERAA 197 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~ 197 (210)
+.+=.+|...++|.+-.
T Consensus 114 ~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444445544433
No 330
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.27 E-value=0.84 Score=35.06 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333 116 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 189 (210)
Q Consensus 116 A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 189 (210)
|..+|.+|..+.+. .+..++.+|.++...|+.=.|+-+|-+++-.. .....+..|+...+..
T Consensus 1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~------~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR------IPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS------B--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Confidence 67899999999888 56678999999999999999999999997442 3345677777777776
No 331
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=2.5 Score=32.95 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=83.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA 179 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~ 179 (210)
..+...+++.|+|..|+....-.+.-.++++|.......+..=..+|...++..++...+..|--.+...--+|. .+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 446778999999999999999999999999999888888888888999999999988888777555544333332 3344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
-..-|..++.-.+|.-|-.||-++++-+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhcc
Confidence 4455667777889999999998887744
No 332
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=90.01 E-value=1.2 Score=27.29 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
..+...|.-.=..|+|++|+.+|.++++....
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33445556667899999999999999887744
No 333
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.81 E-value=1.1 Score=23.06 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHS 161 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~ 161 (210)
+.++.+|..+...|++++|+..|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356788999999999999999955
No 334
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.71 E-value=2.7 Score=36.42 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=74.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q 028333 105 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 184 (210)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 184 (210)
.+-+..++..+-+.-|.+|+.-..-....-.....+...|..|-..|+.+.|...|+++.+.. .......+.+|.+.|
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWA 432 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHH
Confidence 344556778888888888876332111222234577889999999999999999999998764 112234578899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhh
Q 028333 185 DCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 185 ~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
..-....+++.|+...+.|....
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCC
Confidence 99899999999999988887543
No 335
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=11 Score=31.23 Aligned_cols=116 Identities=5% Similarity=-0.072 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
+-.......+..+.++...+++..|-....+..--+....+......++..++.++-..+....+..+.-+++....+.+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 33445556777899999999999999999999988888788888888999999999888888889999999988887777
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+-..+..-.+++.....+|-.++|.+....|+...
T Consensus 348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~I 383 (482)
T KOG4322|consen 348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLI 383 (482)
T ss_pred cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHH
Confidence 767778888899999999999999999999887654
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.36 E-value=0.99 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
.+++.+|...|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999974
No 337
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.27 Score=38.96 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KD-----------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~-----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
.....|.-.+..++|..|..-|.+++...... .+ .......+.+++.+-...+.+..|+.....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 34557888999999999999999988765521 01 111222556788888889999999888877766
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.+....+++..+..+....++++|+++++.+....++
T Consensus 304 ------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 304 ------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 23556788999999999999999999999998766554
No 338
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=89.07 E-value=12 Score=31.02 Aligned_cols=107 Identities=16% Similarity=0.003 Sum_probs=74.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHh--
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE-- 170 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~~~~-- 170 (210)
...+|..++..++|+.|...|+-+.+-+..-+.....+-+.--.|.+....+.. +....+++.|+....+.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 466899999999999999999988886654334444555666667776666643 36677888887777652
Q ss_pred ---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 171 ---GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 171 ---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
........+....+.++...|.+.+|...+-+....
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111234456777788888899988887776655543
No 339
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.16 E-value=1.9 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
+..+...|.-+=..|++++|+.+|.++++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444455555555666666666655543
No 340
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=88.10 E-value=8.5 Score=28.18 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
+.-+...+....+.|++++|...++++.+...+++.........++-|.+-..+..|-+|...+.-
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~ 94 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSI 94 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 334455666777889999999999999998888665555555566667777777788888776653
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.91 E-value=6.1 Score=30.75 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
...++..++..+...++++.+++.+++.+... +..-..|..+-..|...|+...|+..|++.-+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 45577889999999999999999999998875 6667889999999999999999999999876643
No 342
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=87.86 E-value=1.3 Score=27.27 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=13.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 183 IADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 183 lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.|..+.+.|+.++|+.+|++++..+
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 3333444555555666665555543
No 343
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.53 E-value=16 Score=30.84 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
+.+....+...+|.+...+|+.++|++.++..++..+. ........++-.++...+.|.++...+.+.-++
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~----~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi----- 324 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN----LDNLNIRENLIEALLELQAYADVQALLAKYDDI----- 324 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc----cchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----
Confidence 34445667788999999999999999999998875432 124457889999999999999999888876221
Q ss_pred CCcchHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhhc
Q 028333 172 EYSGSTEAYGAIADCYTE-LGD---------------LERAARFYDKYISRLE 208 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~-~g~---------------~~~A~~~~~~al~~~~ 208 (210)
..+..+...+.-|..-.. .++ -..|.+...+|++..+
T Consensus 325 ~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 123344445554554322 222 1345677777776543
No 344
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.48 E-value=13 Score=29.52 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhc---------------------------CChHHHHHHHHHHHHHHHHc
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNV---------------------------KDPIEEKKAARGLGASLQRQ 150 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~-l~~~~---------------------------~~~~~~~~~~~~lg~~~~~~ 150 (210)
+.+..+......|+..+|+..++..+. ..... ......+.++.-+|......
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 456668888899999999999888887 22211 11234566777778877777
Q ss_pred ------CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333 151 ------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 151 ------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 190 (210)
++.+.++..|++++++. +....+++.+|..+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~------~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLD------PSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhC------hhHHHHHHHHHHHHHHH
Confidence 88899999999998886 44556788888877664
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.80 E-value=6.4 Score=30.88 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+...+..|...|.+.+|+.+.++++.+. +.....+..+-.++..+||--.|...|++.-+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 44455777889999999999999998875 6677888999999999999999999998876543
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.77 E-value=2.4 Score=25.81 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.+..+...+.-+-..|++++|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666544
No 347
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=86.54 E-value=2.8 Score=25.50 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 140 ARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+...|.-.-..|+|++|+.+|.++++....
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344455566899999999999999887744
No 348
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.32 E-value=14 Score=28.68 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQ-------DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 99 ~~~~~g~~~~~~~-------~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~ 167 (210)
+.+.+|..|..-. +...|...|.++-... ...+...+|.+|.. ..++++|..+|+++-+.-
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4677777776542 2336777777776643 56678889988865 558999999999995431
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHh
Q 028333 168 EREGEYSGSTEAYGAIADCYTELG---------------DLERAARFYDKYISR 206 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~lg~~y~~~g---------------~~~~A~~~~~~al~~ 206 (210)
.....+.++ ++...| +...|..++.++-..
T Consensus 222 --------~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 222 --------DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred --------CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 167888888 666555 888888888877553
No 349
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.23 E-value=15 Score=29.25 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 189 (210)
Q Consensus 113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 189 (210)
.++-++.+++.++-+++.-.......+..+.|..|.+.||-+.|.+.+.+..+-.-..+..-...-+...+|..|..
T Consensus 80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc
Confidence 34556667777777766555666788999999999999999999999999987776666655555666777777754
No 350
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=86.15 E-value=3 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.+...|.-.-..|+|++|+.+|.++++....
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444556667899999999999999888744
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.11 E-value=9.5 Score=26.70 Aligned_cols=84 Identities=24% Similarity=0.180 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+......-....+.+.+...+...--+.++ ....-..-|+++...|++.+|+..|+...+-. ...+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~------~~~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSSA------GAPPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhccC------CCchH
Confidence 3444444445577888877766554444343 45555667999999999999999998874332 34466
Q ss_pred HHHHHHHHHHHcCCHH
Q 028333 179 AYGAIADCYTELGDLE 194 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~ 194 (210)
+---++.|+..+||.+
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 6677888888888854
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.09 E-value=2.7 Score=36.07 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+.....++|++....+-.-.|-..+.+++.+.-. .+...+.+|+.+..+.+.++|++.|++|++..
T Consensus 641 ~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 641 QDVPLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred hcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 3345677888888888888899999999887633 55678889999999999999999999998765
No 353
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=86.07 E-value=16 Score=31.35 Aligned_cols=86 Identities=9% Similarity=0.016 Sum_probs=56.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028333 122 AALELAQNVKDPIEEKKAARGLGASLQR--QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 199 (210)
Q Consensus 122 ~al~l~~~~~~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 199 (210)
+.+-+.-..+.-..-+.++.++|.+--. ..+-..++..|++|+...+..-+ .....-|..+|-.|+..+++.+|+.+
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~-n~HvYPYty~gg~~yR~~~~~eA~~~ 340 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN-NHHVYPYTYLGGYYYRHKRYREALRS 340 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT-T--SHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc-CCccccceehhhHHHHHHHHHHHHHH
Confidence 3333333444444456677777766533 33456689999999999887644 33446688899999999999999999
Q ss_pred HHHHHHhhc
Q 028333 200 YDKYISRLE 208 (210)
Q Consensus 200 ~~~al~~~~ 208 (210)
+.+|-+.+.
T Consensus 341 Wa~aa~Vi~ 349 (618)
T PF05053_consen 341 WAEAADVIR 349 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988866543
No 354
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.31 E-value=4.5 Score=23.95 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|.-+=..|++++|+.+|.++++..-.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3455677888888999999999999999986543
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.14 E-value=16 Score=28.48 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333 110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 189 (210)
Q Consensus 110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 189 (210)
..+.++|+..|.+.+++-...++ +-..++-.+-.+++.+++|++-++.|++.+...+..-.+...-.+.+++-..-..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKge--WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGE--WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 45799999999999998655332 3456788888899999999999999999887665432222222333333333334
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 028333 190 LGDLERAARFYDKYISRL 207 (210)
Q Consensus 190 ~g~~~~A~~~~~~al~~~ 207 (210)
..+.+.-.++|+..++..
T Consensus 118 S~~m~LLQ~FYeTTL~AL 135 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDAL 135 (440)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 556666666776665543
No 356
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=85.02 E-value=2.8 Score=39.50 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Q 028333 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~ 150 (210)
........+|..|+..|.+..|+.+|..|+.+++..+|..+.+.++-+++.+....
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 34555677999999999999999999999999999999999999999988776543
No 357
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.83 E-value=2.5 Score=30.71 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333 110 NQDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQR-----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183 (210)
Q Consensus 110 ~~~~~~A~~-~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 183 (210)
+|+|-++++ .|++|..+++..-+....+.+.+.+|.-+.. .+++..|+++++.+-. ...+.+..++
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~ 111 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYL 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhh
Confidence 345556665 4788888888877777778888888877764 4578899999998843 3356777888
Q ss_pred HHHHHHc-----CC--HHHHHHHHHHHHH
Q 028333 184 ADCYTEL-----GD--LERAARFYDKYIS 205 (210)
Q Consensus 184 g~~y~~~-----g~--~~~A~~~~~~al~ 205 (210)
|.++..- ++ ..+|.+++.++-+
T Consensus 112 gLl~~~g~~~r~~dpd~~Ka~~y~traCd 140 (248)
T KOG4014|consen 112 GLLHWNGEKDRKADPDSEKAERYMTRACD 140 (248)
T ss_pred hhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence 8887652 22 6788888887754
No 358
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=84.66 E-value=7.3 Score=34.34 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 124 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 124 (210)
++..-.++.++|..+..+..|++|.+||...-
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445577888888888888888888887643
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.73 E-value=24 Score=29.32 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=67.6
Q ss_pred HHHHHhcccccccccccccCCCCccccccchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 028333 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKK--EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 140 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 140 (210)
+..+...+..+|.....+..+........++- ..-.+.-.+..||+.+++.+.|+..-.+.+.+.+. ...-.
T Consensus 192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~------~frnH 265 (569)
T PF15015_consen 192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS------YFRNH 265 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc------hhhHH
Confidence 45555667777777665443333211111111 12224466899999999999999999999886554 55556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
...+.++..+.+|.+|-..+.-+.=+.
T Consensus 266 LrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 266 LRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999998887776554
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.61 E-value=6.7 Score=24.77 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 200 (210)
Q Consensus 132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 200 (210)
..+....+.+.++..+...|+++.|++.+-..++..+. +....+...+=.++..+|.-+--...|
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~----~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD----YEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT----CCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----ccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 56777889999999999999999999999888766432 222355666667777777744333333
No 361
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=82.81 E-value=8.7 Score=29.67 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333 133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 133 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.........++=..+...++++.|..+.++.+.+. |..+.-..-.|.+|..+|.+.-|+.-++..++..++|
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~------P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLN------PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhC------CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 44466677888888999999999999999998885 5556667778999999999999999998877766543
No 362
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=82.59 E-value=12 Score=30.48 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHH---HhC--CCcchHHHHHHHHH
Q 028333 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI-KYHSMVLQISE---REG--EYSGSTEAYGAIAD 185 (210)
Q Consensus 112 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~~---~~~--~~~~~~~~~~~lg~ 185 (210)
..++|+..|.++.++-+. ...-.|++.+....|.-.... +.-+-++++.. +.+ +....-..+-.++.
T Consensus 241 ~ldkAi~~Y~kgFe~~~~-------~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~E 313 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPD-------YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLE 313 (374)
T ss_pred HHHHHHHHHHHHHcCCcc-------ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 478888899988885421 223345666666666543333 32222222221 111 11223445666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhc
Q 028333 186 CYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 186 ~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+....|++++|.+++++++...+
T Consensus 314 a~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 314 ASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHcCCHHHHHHHHHHHhhcCC
Confidence 88889999999999999987654
No 363
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=82.00 E-value=21 Score=27.32 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333 94 KEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYH 160 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 160 (210)
+..+.-+-..|..|...-. .++|...|++|++++.. +. ++...+.+++.--..|-..++.++|....
T Consensus 115 eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lA 194 (244)
T smart00101 115 ESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLA 194 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555567777765433 45888999999999876 32 33444444444444455689999999888
Q ss_pred HHHHHHH
Q 028333 161 SMVLQIS 167 (210)
Q Consensus 161 ~~al~~~ 167 (210)
++++..+
T Consensus 195 k~afd~A 201 (244)
T smart00101 195 KQAFDEA 201 (244)
T ss_pred HHHHHHH
Confidence 8887665
No 364
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.99 E-value=10 Score=23.90 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.++....+.+.+|..+...|+++.|++.+-..+...+.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34456677788888888888888888877776664433
No 365
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.83 E-value=10 Score=30.59 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-C-hHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-D-PIEEKKAARGLGASLQRQGKYREAIKYH 160 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 160 (210)
.+..+.-+...|+-++.++++++|...|..|..++.... . +.....+++..|.+++..++.+.+.-.+
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666778899999999999999999999999998754 2 3345678888899998888777655443
No 366
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.90 E-value=19 Score=29.00 Aligned_cols=28 Identities=18% Similarity=-0.015 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
..++.+|.-|...+|++.|+-.|.++.+
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~ 153 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANE 153 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence 4566677888888888777777776654
No 367
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=80.63 E-value=7.1 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|.-.=..|+|++|+.+|.++++.+-.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4455677788888899999999999999987654
No 368
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.60 E-value=11 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|.-+-..|++++|+.+|++++++.-+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999999997765
No 369
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=80.57 E-value=3.8 Score=19.29 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 180 YGAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
|..+=..|...|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4555566666777777777666554
No 370
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.06 E-value=4.6 Score=30.50 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=48.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.....++.+.|.+.|.+++.++++ -...++.+|...-+.|+.+.|..-+++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345678999999999999998876 56678899999999999999999999999875
No 371
>PF12854 PPR_1: PPR repeat
Probab=80.04 E-value=5.8 Score=19.77 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
....|..+-..|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345677788888888888888887765
No 372
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.59 E-value=34 Score=28.27 Aligned_cols=95 Identities=25% Similarity=0.244 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+.+--++.-...|+|+.|.+-|+..+. ++...---+.++=.--...|+++.|..|.+.+.... +....
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A------p~l~W 189 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA------PQLPW 189 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc------cCCch
Confidence 445557778889999999999987766 555444344444444467999999999999997776 44444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+....=...+..|+++.|++..+...+
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444444556678999999998876654
No 373
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=79.39 E-value=31 Score=27.74 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 147 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 147 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
..+.+|.++|++++++.++..+....+.....+...+|+++...||.+.+.+-.+..-+.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ 144 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSM 144 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445669999999999999888776666677788899999999999999999888766553
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.60 E-value=22 Score=25.75 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+..+.+++.++...|+.++|....+++..+++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3457788888888888888888888888877665
No 375
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.58 E-value=15 Score=27.86 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 028333 154 REAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYISR 206 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~ 206 (210)
++|...|++|++++... ..+|..-....|.+..|++ +|+.++|....++|++-
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 56777777777777762 2233344445555555533 67777777766666553
No 376
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=78.44 E-value=5.6 Score=19.54 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 028333 178 EAYGAIADCYTEL----GDLERAARFYDKYIS 205 (210)
Q Consensus 178 ~~~~~lg~~y~~~----g~~~~A~~~~~~al~ 205 (210)
.+.+.+|.+|..- .+.++|..+|+++-+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3566777777542 378888888888764
No 377
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.35 E-value=13 Score=22.74 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|.-.=..|+|++|+.+|.++++.+-.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999999999999997644
No 378
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.99 E-value=7.8 Score=23.41 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.+..+...|..+-..|++++|+.+|.++++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555566666667777777777777544
No 379
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.13 E-value=29 Score=26.23 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=62.1
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc--hHHH
Q 028333 108 LRNQDLEKAFTEFKAALELAQNVKDP------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEA 179 (210)
Q Consensus 108 ~~~~~~~~A~~~~~~al~l~~~~~~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~ 179 (210)
+..|+|+.|++...-|+......-+. ...++-....+......|+.-+ ..+......+. ...+-+. .+..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e-~~~~~~~~~l~-~~~dmpd~vrAKl 171 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVE-PYFLRVFLDLT-TEWDMPDEVRAKL 171 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHH-hcCCCChHHHHHH
Confidence 57799999999999998865443222 2234444556666666665221 11233333332 2223333 5667
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHHhhcc
Q 028333 180 YGAIADCYT---------ELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~lg~~y~---------~~g~~~~A~~~~~~al~~~~~ 209 (210)
|...|..+. ..++...|+.++++|+++.++
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 888888883 557889999999999987653
No 380
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.97 E-value=15 Score=28.87 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
.-..-+.-....|++..|...|..++... +....+...++.||...|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~------~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA------PENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC------cccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34556667788999999999999998886 55578899999999999999998887754
No 381
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=76.92 E-value=15 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 142 GLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+.|..+-..|+.++|+.+|+++++...+
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3333344446666666666666665544
No 382
>PF13041 PPR_2: PPR repeat family
Probab=76.63 E-value=8.5 Score=20.86 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
..|..+=..|.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566677777777888888887777654
No 383
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=76.27 E-value=6.8 Score=23.85 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 142 GLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
..|.-.-..|+|++|..+|..+++
T Consensus 11 ~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 11 RLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 384
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.16 E-value=26 Score=26.56 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhC-----C-----CHHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333 95 EELLSRLKTGKNFLRN-----Q-----DLEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYHS 161 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~-----~-----~~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 161 (210)
..+.-+...|..|... + -.++|...|++|++++.. +. ++....-+++.-...|-..|+.++|+...+
T Consensus 114 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~ 193 (236)
T PF00244_consen 114 SKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAK 193 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444445567666532 2 247889999999999998 43 333344444444444455999999999999
Q ss_pred HHHHHHHH
Q 028333 162 MVLQISER 169 (210)
Q Consensus 162 ~al~~~~~ 169 (210)
+++..+..
T Consensus 194 ~afd~a~~ 201 (236)
T PF00244_consen 194 QAFDEAIS 201 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99877743
No 385
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.75 E-value=29 Score=29.12 Aligned_cols=76 Identities=25% Similarity=0.260 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCCHHHHH
Q 028333 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAA 197 (210)
Q Consensus 120 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~ 197 (210)
++.|++++...++ ...+..+|...+.+|+++-|..+|+++-....-. ....+....+..|+......|++.-|.
T Consensus 334 L~~A~~~a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 334 LDIALEIAKELDD----PEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHCCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444332 3367888999999999999999888874433210 001122344445555555555555544
Q ss_pred HH
Q 028333 198 RF 199 (210)
Q Consensus 198 ~~ 199 (210)
.+
T Consensus 410 ~~ 411 (443)
T PF04053_consen 410 QA 411 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 386
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.22 E-value=46 Score=27.54 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191 (210)
Q Consensus 112 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 191 (210)
++..-.+.++.-++-.+........-.++..+|.-|...|+.+.|+..|-++-+..... ...+..+.++-.+-..+|
T Consensus 125 ~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~ 201 (466)
T KOG0686|consen 125 KAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMG 201 (466)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444445566788999999999999999999999976665322 235677888888888899
Q ss_pred CHHHHHHHHHHHHHh
Q 028333 192 DLERAARFYDKYISR 206 (210)
Q Consensus 192 ~~~~A~~~~~~al~~ 206 (210)
+|..-..+-.+|...
T Consensus 202 nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 202 NWGHVLSYISKAEST 216 (466)
T ss_pred chhhhhhHHHHHHhC
Confidence 998888877777654
No 387
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=75.15 E-value=7.5 Score=36.81 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 191 (210)
.++..-.+|..|...|.+..|+..|.+|+...+..+|.-+.+.++-.++.|...++
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence 45667789999999999999999999999999999999999999888887765543
No 388
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=75.10 E-value=16 Score=22.06 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|...-..|++++|+.+|.++++.+..
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555666788888899999999999999987654
No 389
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=74.95 E-value=7.8 Score=18.53 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 180 YGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
|..+=..|...|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566667777777777766543
No 390
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=74.91 E-value=11 Score=22.69 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.+..+...|.-.-..|++++|+.+|..+++.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334444555555666666666666666443
No 391
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=74.04 E-value=26 Score=25.78 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333 121 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 200 (210)
Q Consensus 121 ~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 200 (210)
++++.+.+. ..-+...+......|++++|...++++.+...++...-..-.-.+.-|.|-..+.+|-+|.-.|
T Consensus 20 EE~l~lsRe-------i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~ 92 (204)
T COG2178 20 EEALKLSRE-------IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLY 92 (204)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHH
Confidence 455555543 3345566666788999999999999998877655422222223445566666677777777665
Q ss_pred H
Q 028333 201 D 201 (210)
Q Consensus 201 ~ 201 (210)
.
T Consensus 93 ~ 93 (204)
T COG2178 93 S 93 (204)
T ss_pred H
Confidence 3
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.86 E-value=24 Score=23.76 Aligned_cols=84 Identities=11% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 028333 111 QDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 187 (210)
Q Consensus 111 ~~~~~A~~~~~~al~l~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 187 (210)
+.-..-...+++++..+.. .++...-.. +-..|...-+ .+.+.|+.... .+-....+..|...|..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~Rylk----iWi~ya~~~~--~~~~if~~l~~----~~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLK----IWIKYADLSS--DPREIFKFLYS----KGIGTKLALFYEEWAEFL 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHH----HHHHHHTTBS--HHHHHHHHHHH----HTTSTTBHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHH----HHHHHHHHcc--CHHHHHHHHHH----cCccHHHHHHHHHHHHHH
Confidence 4444445677777776643 233333222 3333333322 66666665532 223356788999999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 028333 188 TELGDLERAARFYDKYI 204 (210)
Q Consensus 188 ~~~g~~~~A~~~~~~al 204 (210)
...|++++|...|+++|
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999999875
No 393
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=73.32 E-value=10 Score=19.04 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHH
Q 028333 152 KYREAIKYHSMV 163 (210)
Q Consensus 152 ~~~~A~~~~~~a 163 (210)
|+++|..+|+++
T Consensus 23 d~~~A~~~~~~A 34 (39)
T PF08238_consen 23 DYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccchHHHHHHH
Confidence 355666666665
No 394
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=73.25 E-value=16 Score=22.10 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|.-.-..|+|++|+.+|.++++.+-.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3445667788888899999999999999997654
No 395
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.91 E-value=7.8 Score=34.25 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR--QGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..--|+..++.+++..|...|..++.+.++ +....+....+.+.++++ .++|..++.-..-++... +...
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~------p~i~ 127 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ------PRIS 127 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccc--cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc------chHH
Confidence 344678888999999998889898888774 555566677788888766 678888888887776554 7777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 028333 178 EAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
.++...+.+|...+.++-|.+-..
T Consensus 128 ~~Ll~r~~~y~al~k~d~a~rdl~ 151 (748)
T KOG4151|consen 128 KALLKRARKYEALNKLDLAVRDLR 151 (748)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Confidence 888889999999999888887743
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.40 E-value=51 Score=26.80 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
++.++.++..+|+++.|.+..++|+-..++
T Consensus 43 Llqls~v~~~~gd~~~A~~lleRALf~~e~ 72 (360)
T PF04910_consen 43 LLQLSEVYRQQGDHAQANDLLERALFAFER 72 (360)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554
No 397
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.39 E-value=56 Score=27.25 Aligned_cols=78 Identities=6% Similarity=-0.150 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
..+..+.+...++.++...+.--.+..+.-.++....+...+...+..-.+++..+..+|-.++|++.++.++....-
T Consensus 308 ~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~ 385 (482)
T KOG4322|consen 308 NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILV 385 (482)
T ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHh
Confidence 344456677778888887888888888888888888888888778888889999999999999999999999877643
No 398
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.15 E-value=17 Score=22.02 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|.-.-..|+|++|+..|..+++.+-.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3445667777778889999999999999987654
No 399
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=71.92 E-value=60 Score=27.39 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=41.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 146 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 146 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
..+..|+|.++.-|-.=..+++ | ...+|.-+|.|.....+|++|..++..
T Consensus 471 yLysqgey~kc~~ys~WL~~ia------P-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIA------P-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhC------C-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3467999999988887777775 4 568899999999999999999999863
No 400
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=70.49 E-value=20 Score=21.51 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
+..+...|.-.-..|++++|+.+|..+++.+-.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344566677777889999999999999987654
No 401
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.26 E-value=33 Score=31.68 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
+.+..|.....+-.-..--+-|.+|+..++.+.+++..+--|.+-+.+|..+|+|++-+.++.-|++-..
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 514 AQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 4667777766443332223668888888888888888888889999999999999999999999976653
No 402
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=69.14 E-value=11 Score=17.99 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.|..+-.++...|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666777777777777766543
No 403
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.08 E-value=71 Score=27.74 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=67.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhCCCcc-hHHHH
Q 028333 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM-VLQISEREGEYSG-STEAY 180 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~-~~~~~ 180 (210)
+...+...++...+.-.....+...+ ..+.+..++|.+....|....+...+.. +............ ...+|
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNP------ENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCc------ccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence 77788888888888877777777433 3677888999888777766666555554 4433311000001 22233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 181 GAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+|.....+|+..++....+++.+..+
T Consensus 147 -~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 147 -QLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred -HHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 379999999999999999988887654
No 404
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.77 E-value=37 Score=27.15 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISE--REGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
.......++.+|-..++++.|-..+.-. .... +..+.......+..+|+.|.+.++..+|..+..++
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4557788999999999999887766432 1111 11122335567899999999999999999888776
No 405
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=67.08 E-value=59 Score=25.44 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
...++..++..+...++++.++..+++-+...+- .-..+..+=..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3445677888888899999999999888885443 4556777888899999999999999988763
No 406
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.37 E-value=15 Score=33.18 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
.-.++...|..+++.++|..|-++|-+.
T Consensus 388 le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 388 LETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3444555555555555555555444433
No 407
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.28 E-value=29 Score=28.76 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+....++|.+|-..+++++|+.+|++++.+..+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 4556788999999999999999999999998876
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.17 E-value=76 Score=26.01 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHH-------
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--QRQGKYREAIKYHSMVLQISER------- 169 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~~~------- 169 (210)
-....+...+..++|..|...+...... +..... ...+..+...| -..-++++|.+++++.+.....
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~ 208 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREG 208 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 3466777888999999999999987763 323222 34555555554 5677899999999977653211
Q ss_pred ----------h----C----CCc-chHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhh
Q 028333 170 ----------E----G----EYS-GSTEAYGAIADCY------TELGDLERAARFYDKYISRL 207 (210)
Q Consensus 170 ----------~----~----~~~-~~~~~~~~lg~~y------~~~g~~~~A~~~~~~al~~~ 207 (210)
. . ... .....+..++..+ ...|+|+.|.-.+=++++..
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 209 LKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 0 000 0000233333333 44788999999888888764
No 409
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.89 E-value=31 Score=20.92 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+......|.-.-..|+|++|...|..+++.+..
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445566666666778999999999998887654
No 410
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.57 E-value=93 Score=29.34 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+..+|..+|....+.+...+|++.|-+|-+ +..|...-.+..+.|.|++=+.|+..+-+-.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikadD-----------ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKADD-----------PSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcCC-----------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 334678889999999999999998876533 3345555566667777777777777764433
No 411
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.58 E-value=24 Score=31.78 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCChHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 118 TEFKAALELAQNVKDPIEEK-KAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 118 ~~~~~al~l~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
..|.-|+.+++.-+.+.... ......|.-++.+|+++.|..+|-+.+..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 46666677666666655532 24445566666677777777776666544
No 412
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=61.56 E-value=94 Score=25.83 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhh
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL-GDLERAARFYDKYISRL 207 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~ 207 (210)
...+..-.+..-+..|++..|..-.+.+.+.. ....+|..|+++-... ||-.++..+..+++...
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~-------pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREA-------PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhC-------chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 44455666777777888888887777776653 2346788889987766 99999999999988654
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.35 E-value=1.7e+02 Score=30.16 Aligned_cols=87 Identities=10% Similarity=-0.059 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q 028333 114 EKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 192 (210)
Q Consensus 114 ~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 192 (210)
.+-+-.+++++...... +.....++.+...+++.+..|+++.|..+.-+|.+. ..+.++...|......|+
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~~gd 1717 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQTGD 1717 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHhhcc
Confidence 33444555655544332 445667889999999999999999999999888543 256889999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 028333 193 LERAARFYDKYISRLE 208 (210)
Q Consensus 193 ~~~A~~~~~~al~~~~ 208 (210)
-..|+..+++.++...
T Consensus 1718 ~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1718 ELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987653
No 414
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=61.08 E-value=50 Score=29.50 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=61.9
Q ss_pred HHHhCCCHHHHHHHHH------HHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Q 028333 106 NFLRNQDLEKAFTEFK------AALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER------- 169 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~------~al~l~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------- 169 (210)
.|....+-+.|++.+. +.+++.+. -.+......+..++|..+..+..+++|..+|.+.-.....
T Consensus 756 ~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l 835 (1189)
T KOG2041|consen 756 LYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL 835 (1189)
T ss_pred hhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 3444444555555433 34444444 2234556678999999999999999999998876322211
Q ss_pred ---------hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 170 ---------EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 170 ---------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
....+.....+-.+|..+...|--++|.+.|-+
T Consensus 836 e~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 836 ELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 011233344556688888889999999888754
No 415
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.00 E-value=25 Score=28.49 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCCcc--h
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL-QISEREGEYSG--S 176 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~--~ 176 (210)
+..++......++....+.-..+|+.-...... ........+-.+....++|..+..++.--+ ++.......+. .
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~--qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG--QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhccCcc--chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 344555555666666666666666664433211 233455566677788888888888776443 23222112222 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 177 TEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
...+++=|.+|..+++++.|+.+|+.++-+
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 344566677889999999999999998754
No 416
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.43 E-value=1.1e+02 Score=26.36 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
+..+-.++.+..++.--...+.+.+.+.+ ...++..++.+|... ..++=...+++..+.. -.....
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e-------~kmal~el~q~y~en-~n~~l~~lWer~ve~d------fnDvv~ 134 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGE-------SKMALLELLQCYKEN-GNEQLYSLWERLVEYD------FNDVVI 134 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc------chhHHH
Confidence 44445556666666666666777777554 355788899999887 5666777788776664 333445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 180 YGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
-..++..|.. ++.+++..+|.+++..+
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence 5667777766 88899999999988654
No 417
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=59.60 E-value=68 Score=23.59 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 028333 112 DLEKAFTEFKAALELAQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 187 (210)
Q Consensus 112 ~~~~A~~~~~~al~l~~~~~----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 187 (210)
+.+.......+.+....... .......++.|.-..+...++++.|..++...-.+.....+.-......+.-|.+.
T Consensus 99 ~~~~~~~l~~~il~~~~~~~~~~~~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~ 178 (220)
T TIGR01716 99 NSEDLEFLGKELLERLKRYRELNRYRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIIL 178 (220)
T ss_pred CHHHHHHHHHHHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHH
Confidence 44555555555555432221 22334557777777888888999999888887555421111112334445555555
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 028333 188 TELGDLERAARFYDKYISRL 207 (210)
Q Consensus 188 ~~~g~~~~A~~~~~~al~~~ 207 (210)
...|+.+.+.+..+++++++
T Consensus 179 y~~g~~~~~~~~i~~~i~~l 198 (220)
T TIGR01716 179 YKEGQKESGEEKIEQAIEIF 198 (220)
T ss_pred HHcCCCcccHHHHHHHHHHH
Confidence 56787666666666666654
No 418
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.52 E-value=38 Score=20.64 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 133 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~ 133 (210)
.+..+...|.--=..|+|++|+..|..+++.+-...++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~ 42 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNE 42 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcCh
Confidence 34456666777778899999999999999988764433
No 419
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=57.23 E-value=75 Score=23.35 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
...+.+....+...++++.|.......-.+...-.+-.......+.-|...+..|+-+.+....++++++.+..+.
T Consensus 128 ~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~ 203 (220)
T TIGR01716 128 IQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGY 203 (220)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCC
Confidence 4456666777778889999888777765544221223334445566677777888888888889999888866543
No 420
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.17 E-value=1.2e+02 Score=25.58 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR 154 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 154 (210)
.|..+|.....+|+++-|...|.++-+ +..+..+|...|+-+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD--------------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT---------------HHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC--------------ccccHHHHHHhCCHH
Confidence 688899999999999999999987654 344556666666653
No 421
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.76 E-value=44 Score=27.68 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhh
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL-------ERAARFYDKYISRL 207 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~ 207 (210)
..-.+|..++..+||+-|...|+.+.+.........-.+.++-..|.+....+.. +....+++.|+..+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 3456899999999999999999999776643222223455666677777776643 35556666665443
No 422
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.67 E-value=99 Score=24.57 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
...+..|...|.+.+|+++.++++.+.+- ....+..+-.++...||--.+...+++.-+...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 44567788999999999999999996443 556677788889999999999999988765543
No 423
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=56.18 E-value=1.1e+02 Score=26.37 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 140 ARGLGASLQRQGKYREAIKYHSMVLQISER------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+.+..-.+..|.-.++++++.-+..-.+. ....++....|..++.||...|.+.+|.....+++...
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki 227 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKI 227 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 467777788899999999998765433222 23346788899999999999999999999999988654
No 424
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=55.03 E-value=59 Score=21.51 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=28.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 190 (210)
.+.-++..|++-+|++..+..+..-. +.......+..-|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~---~~~~~~~lh~~QG~if~~l 46 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG---EDESSWLLHRLQGTIFYKL 46 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc---CCCchHHHHHHHhHHHHHH
Confidence 35667889999999999998865532 2222224555666666443
No 425
>PF13041 PPR_2: PPR repeat family
Probab=54.75 E-value=33 Score=18.42 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
.+|+-+=..|.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3566777788899999999999988854
No 426
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.05 E-value=1e+02 Score=25.67 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.+.+..+.|.+|-..+++++|+.+|++++....+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 4556678999999999999999999999988765
No 427
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.50 E-value=60 Score=21.11 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 126 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l 126 (210)
........|..-+..||++.|.+...++-+.
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445677799999999999999999998553
No 428
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.13 E-value=21 Score=16.58 Aligned_cols=15 Identities=33% Similarity=0.844 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHh
Q 028333 192 DLERAARFYDKYISR 206 (210)
Q Consensus 192 ~~~~A~~~~~~al~~ 206 (210)
+.+.|...|++++..
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344555555555543
No 429
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=52.02 E-value=97 Score=28.25 Aligned_cols=89 Identities=17% Similarity=0.054 Sum_probs=42.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q 028333 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYRE-AIKYHSMVLQISEREGEYSGSTEAYGAIA 184 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~lg 184 (210)
+-..++.|+.|+.++.+-....+...+-......|-.+-.+|...|..++ -+..|-+-+. ....+..-+
T Consensus 873 Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~----------~n~~~~~aa 942 (1243)
T COG5290 873 IDNYLSIYESALGHLNEDLNVIREVMKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLV----------DNLYHISAA 942 (1243)
T ss_pred hhhhHHHHHHHHHhhHhHHHHHHHHHHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHH----------hhhhhHHHH
Confidence 33445677777777777666555543333333444444444443333332 1111211111 112234445
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 028333 185 DCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 185 ~~y~~~g~~~~A~~~~~~al 204 (210)
..|...|++.+|...|+.|.
T Consensus 943 ~aye~~gK~~Ea~gay~sA~ 962 (1243)
T COG5290 943 KAYEVEGKYIEAHGAYDSAL 962 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665553
No 430
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=51.92 E-value=89 Score=23.04 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=58.8
Q ss_pred HHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------------------
Q 028333 99 SRLKTGKNFLR-------NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ--------------------- 150 (210)
Q Consensus 99 ~~~~~g~~~~~-------~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~--------------------- 150 (210)
++.++|.+... ..+.++|.+|+.++-++- ...+.++|...|+..
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~ 178 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELG 178 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhh
Confidence 45666665543 123778888888876642 233455555555443
Q ss_pred ---CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhc
Q 028333 151 ---GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRLE 208 (210)
Q Consensus 151 ---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~ 208 (210)
+|.++|..+..+|-++ ....+.-|+.+.|.. -.+.++|..+-++|.++.+
T Consensus 179 ~~~kDMdka~qfa~kACel--------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~ 235 (248)
T KOG4014|consen 179 SLSKDMDKALQFAIKACEL--------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIME 235 (248)
T ss_pred hhhHhHHHHHHHHHHHHhc--------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHH
Confidence 4556666666666433 345667777777764 2367899999998888764
No 431
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.90 E-value=2e+02 Score=27.34 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+..+..+|.+..+.+...+|++.|-+| ++ +..|.+.-.+-...|.|++=.+++..|.+..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 457788999999999999999999777 22 2457777777778899998888888776654
No 432
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.99 E-value=1.5e+02 Score=25.89 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+..+.-+..+...+....+++++...+...........+.-|.-++..++|.+|++....|++..++
T Consensus 483 ~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~veP 551 (569)
T PRK04778 483 EDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEP 551 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCC
Confidence 344555556677778888888888876655555556667778888888899999999999888876643
No 433
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.27 E-value=3.3e+02 Score=28.37 Aligned_cols=108 Identities=15% Similarity=0.062 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
+...+.+++..|.+.+..|+++.|-.+.-+|.+.- .+.++...+......|+-..|+..+++.+........
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 44567788999999999999999999888877621 5678888999999999999999999999976643211
Q ss_pred C-----cc------hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhc
Q 028333 173 Y-----SG------STEAYGAIADCYTELGDL--ERAARFYDKYISRLE 208 (210)
Q Consensus 173 ~-----~~------~~~~~~~lg~~y~~~g~~--~~A~~~~~~al~~~~ 208 (210)
. +. ...+.+.++.-..+.|++ +.-+.+|..+.++.+
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1 11 122345555555555653 344567777776654
No 434
>PRK11677 hypothetical protein; Provisional
Probab=48.94 E-value=86 Score=21.55 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 028333 46 ELQRVNEQLRQINAAL 61 (210)
Q Consensus 46 ~~~~l~~~l~~~~~~~ 61 (210)
+...+..+|......+
T Consensus 30 ~q~~le~eLe~~k~el 45 (134)
T PRK11677 30 QQQALQYELEKNKAEL 45 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 435
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.72 E-value=1e+02 Score=25.15 Aligned_cols=64 Identities=14% Similarity=-0.025 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREG--EYSGSTEAYGAIADCYTELGDLERAARFY 200 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 200 (210)
..-+...|+-++..+++++|.+.|..|..+..... .......+++..|..+.++++++.+.-.+
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566789999999999999999999998886542 23346778888999999988887766544
No 436
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.83 E-value=22 Score=24.08 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=6.1
Q ss_pred CCccchHHHHHHH
Q 028333 17 NSFFNMPLLLFVA 29 (210)
Q Consensus 17 ~~~~~~~~~~~~~ 29 (210)
|.+|.+.|+++++
T Consensus 2 W~l~~iii~~i~l 14 (130)
T PF12273_consen 2 WVLFAIIIVAILL 14 (130)
T ss_pred eeeHHHHHHHHHH
Confidence 5555544444433
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=47.65 E-value=25 Score=28.37 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
...+++.+-...+.+..|+.....++. +......+++..|..+....++++|+..++.+....
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALR------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred cccchHHhcccccCCCcceeccccccc------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 456678888888999888887776666 444577899999999999999999999999986554
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.43 E-value=59 Score=21.88 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 115 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 115 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
.+...|.-... .+.....+..|...|..+-..|++++|.+.|++++
T Consensus 81 ~~~~if~~l~~----~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYS----KGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHH----HTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 45555543332 22233356778888999999999999999999875
No 439
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=46.59 E-value=1.2e+02 Score=24.11 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=41.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+......+..+.|+..++..+.-. ............++.++...|.++.|...|++..+..+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~---~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQA---REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccC---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344455666777777666543321 22334556677888999999999999999987766543
No 440
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.91 E-value=93 Score=21.08 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 028333 48 QRVNEQLRQINA 59 (210)
Q Consensus 48 ~~l~~~l~~~~~ 59 (210)
..+..+|.....
T Consensus 28 ~~l~~eL~~~k~ 39 (128)
T PF06295_consen 28 AKLEQELEQAKQ 39 (128)
T ss_pred HHHHHHHHHHHH
Confidence 344454544444
No 441
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.36 E-value=1.9e+02 Score=24.47 Aligned_cols=109 Identities=9% Similarity=-0.033 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHcCCHH----------HHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-----EKKAARGLGASLQRQGKYR----------EAIKYHSMV 163 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~-----~~~~~~~lg~~~~~~~~~~----------~A~~~~~~a 163 (210)
.+...|........|+.|+..+-.|-+.+-..+.... .+..-..+.|||+.+++.. .|...|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3455778888889999998877666555433322211 2223346788888766532 233333333
Q ss_pred H-----HHHH-HhCCCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 164 L-----QISE-REGEYSGST---EAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 164 l-----~~~~-~~~~~~~~~---~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
. ++.. +.+..|..+ ..+.--|.+.+.+|+-++|.++++.+...+
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1 1110 112233322 346678999999999999999999887643
No 442
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.27 E-value=1.2e+02 Score=22.20 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=52.1
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-SGSTEAYGAIADCY 187 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y 187 (210)
..+..++|+.-|...- +.+.......+....|.+..+.|+...|+.+|.++-... ..+ ...-.+...-+..+
T Consensus 70 ~~~k~d~Alaaf~~le----ktg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 70 QENKTDDALAAFTDLE----KTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HcCCchHHHHHHHHHH----hcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHH
Confidence 4556666666554422 233333345577888999999999999999999884332 111 12234556667777
Q ss_pred HHcCCHHHHHH
Q 028333 188 TELGDLERAAR 198 (210)
Q Consensus 188 ~~~g~~~~A~~ 198 (210)
...|.|+.-..
T Consensus 143 vD~gsy~dV~s 153 (221)
T COG4649 143 VDNGSYDDVSS 153 (221)
T ss_pred hccccHHHHHH
Confidence 77788776544
No 443
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=45.00 E-value=43 Score=22.54 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
....+|......|++++|..+|-+|+.++++
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3466899999999999999999999997764
No 444
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=44.82 E-value=2.3e+02 Score=25.40 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHhCCCHHHHHH------HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------
Q 028333 103 TGKNFLRNQDLEKAFT------EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV------------- 163 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~------~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------- 163 (210)
.|......|+.++|+. +.+-++++.++++-.. -+.+...+..+.....+.-|.+.|++.
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e--re~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~ 786 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE--REPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVET 786 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh--hhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeec
Confidence 3556667788888876 4566677776654332 222333333333444444444444433
Q ss_pred ------HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 164 ------LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 164 ------l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
..++++. +....+.|+--|.-+.+..++++|.+.|-+|
T Consensus 787 ~~W~eAFalAe~h--Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 787 QRWDEAFALAEKH--PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHhHhhhhhC--ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 2333221 1234567888888888889999998888665
No 445
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.20 E-value=64 Score=18.72 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 028333 102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 159 (210)
Q Consensus 102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 159 (210)
.-|..++..|+|=+|-+.++......+.-........+....|......|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3466777888888888888887763322111122233444455566778888877654
No 446
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=43.85 E-value=92 Score=20.46 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV 130 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~ 130 (210)
.+...+..|..|...|+.+.|--+|.+.+.+...+
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 45556778888999999999999999998888544
No 447
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.80 E-value=54 Score=22.06 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333 141 RGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
..+|..+...|++++|..+|-+|+.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V 92 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKV 92 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 45566666666666666665555443
No 448
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.60 E-value=1.8e+02 Score=23.71 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQ-----NVK-----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~-----~~~-----------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+...|..-...+-.+.|+-.|++++.-.- +.. .....-.+++.......++|.+..|+++++-.
T Consensus 50 ~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlL 129 (360)
T PF04910_consen 50 YRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLL 129 (360)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34444444444556677777776654333 110 01112336666777778899999999999988
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
+.+.... +..-+.+.|-..-...++++-=++.++.
T Consensus 130 lsLdp~~----DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 130 LSLDPDE----DPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HhcCCCC----CcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 8875211 1222333444444455666555555544
No 449
>PF15469 Sec5: Exocyst complex component Sec5
Probab=42.22 E-value=1.3e+02 Score=21.59 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.2
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhc
Q 028333 107 FLRNQDLEKAFTEFKAALELAQNV 130 (210)
Q Consensus 107 ~~~~~~~~~A~~~~~~al~l~~~~ 130 (210)
+...|+|+.++..|.++..+....
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999998875
No 450
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.86 E-value=1.6e+02 Score=22.50 Aligned_cols=53 Identities=11% Similarity=-0.015 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHH-h-CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 028333 153 YREAIKYHSMVLQISER-E-GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYIS 205 (210)
Q Consensus 153 ~~~A~~~~~~al~~~~~-~-~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~ 205 (210)
-++|...|++|++++.. . ..+|...-...|.+..|++ +++.++|....++|.+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45889999999999765 2 2233344455666666555 6999888866665554
No 451
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.35 E-value=88 Score=26.30 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------HHcCCHHHHHHHHH
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--------QRQGKYREAIKYHS 161 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~--------~~~~~~~~A~~~~~ 161 (210)
.+-.|.+.+++|+-++|.++++.+......+.........+..+|.-- .-.|+.+.|..+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRlaLRsc~g~Vd~AvqfI~ 339 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLALRSCNGDVDSAVQFII 339 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHHHHhccccHHHHHHHHH
Confidence 356799999999999999999999998888766655555555555321 12567777777764
No 452
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=39.88 E-value=1e+02 Score=20.22 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.+..+...|..|...||.+.|--+|.+.+.+......++
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~~Hp 75 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIPKHP 75 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHCCSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcCc
Confidence 455667889999999999999999999999885554444
No 453
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=39.53 E-value=1.3e+02 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 028333 133 PIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQ 165 (210)
Q Consensus 133 ~~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~ 165 (210)
......++.-++.+++..+ ++++|+.+.++++.
T Consensus 172 r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 172 RAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 3445667888899999988 89999999999875
No 454
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.08 E-value=1.4e+02 Score=21.22 Aligned_cols=64 Identities=14% Similarity=-0.055 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
....+..+..+-...++.+.+...+.- ++.. +|.....-..-|.++...|++.+|+..++...+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~A-LrvL-----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDA-LRVL-----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHH-HHHh-----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 455666777777778888888777764 4443 377888889999999999999999999988654
No 455
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.64 E-value=37 Score=28.15 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 181 GAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+.+|-.|..+++|.+|++.|-.++-.
T Consensus 276 Y~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777665543
No 456
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.52 E-value=1.2e+02 Score=27.64 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAA 123 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~a 123 (210)
+...-|...+..|+++.|..+|-++
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~t 394 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIET 394 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455677788888999988888653
No 457
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=38.15 E-value=2.7e+02 Score=24.28 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 028333 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 186 (210)
Q Consensus 107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 186 (210)
|+.+++..-|...|+-.+. +.+|.+..... .-......++-..|...|++++... -........|..+=.-
T Consensus 411 y~cskD~~~AfrIFeLGLk---kf~d~p~yv~~---YldfL~~lNdd~N~R~LFEr~l~s~---l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLK---KFGDSPEYVLK---YLDFLSHLNDDNNARALFERVLTSV---LSADKSKEIWDRMLEY 481 (656)
T ss_pred HHhcCChhHHHHHHHHHHH---hcCCChHHHHH---HHHHHHHhCcchhHHHHHHHHHhcc---CChhhhHHHHHHHHHH
Confidence 5567777777777777776 33344332222 2233445677777777777776541 0111122344444444
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 028333 187 YTELGDLERAARFYDKYI 204 (210)
Q Consensus 187 y~~~g~~~~A~~~~~~al 204 (210)
-..-|+....++.=++-.
T Consensus 482 ES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 445566555554444333
No 458
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.46 E-value=66 Score=27.44 Aligned_cols=18 Identities=6% Similarity=0.292 Sum_probs=9.8
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 028333 189 ELGDLERAARFYDKYISR 206 (210)
Q Consensus 189 ~~g~~~~A~~~~~~al~~ 206 (210)
.+|=+++|..++++.+-+
T Consensus 403 ~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHhHHHHHHHHHHHHhcc
Confidence 345556666666555543
No 459
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=37.08 E-value=2.2e+02 Score=23.02 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333 115 KAFTEFKAALELAQNVKD-----------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 115 ~A~~~~~~al~l~~~~~~-----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
++.++|++|.......+. ....+.+++..|......+++-+|+.+++.+....++
T Consensus 214 ~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 214 GATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 445577777776654321 1123446677777777888899999999998876543
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.04 E-value=2.4e+02 Score=23.20 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Q 028333 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE--LGDLERAARFYDKYISR 206 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~--~g~~~~A~~~~~~al~~ 206 (210)
.-....+...++.++|..|...+...... ...... ...+..++..|.. .-++++|.+++++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456677788999999999999998653 212121 3556666666654 67899999999987753
No 461
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=36.76 E-value=1.3e+02 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 028333 174 SGSTEAYGAIADCYTELG-----DLERAARFYDKYIS 205 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g-----~~~~A~~~~~~al~ 205 (210)
.....++.-++++|...+ ++++|..+.++.++
T Consensus 173 ~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 173 AWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 346678888999999999 89999999998875
No 462
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=36.34 E-value=2.4e+02 Score=23.03 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 178 EAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.+++..|....+.+++-+++.+++.|.+.
T Consensus 253 ~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~ 281 (361)
T cd09239 253 IAHLHMGKQSEEQQKMGERVAYYQLANDK 281 (361)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34577777777778888888888888764
No 463
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=36.12 E-value=1.1e+02 Score=21.42 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=9.4
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 028333 144 GASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~ 162 (210)
-..|+.+|+|++|+.+.+.
T Consensus 110 Wk~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 110 WKIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHHhcCcHHHHHHHccC
Confidence 3444455555555555544
No 464
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.46 E-value=2.5e+02 Score=22.99 Aligned_cols=66 Identities=14% Similarity=0.007 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------------------------hHHHHHHHHHHHHHHHHcCC
Q 028333 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------------------------PIEEKKAARGLGASLQRQGK 152 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---------------------------~~~~~~~~~~lg~~~~~~~~ 152 (210)
-++.|.+++..++|.+....+..+-.-.+.-.| .........+.|.-|+...|
T Consensus 61 ~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD 140 (449)
T COG3014 61 DLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLND 140 (449)
T ss_pred hhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcc
Confidence 366788888888887777666544433322111 11223355677888888999
Q ss_pred HHHHHHHHHHHHH
Q 028333 153 YREAIKYHSMVLQ 165 (210)
Q Consensus 153 ~~~A~~~~~~al~ 165 (210)
++.|..-|.++..
T Consensus 141 ~~~ArVEfnRan~ 153 (449)
T COG3014 141 SAKARVEFNRANE 153 (449)
T ss_pred hhhhHHHHHHHHH
Confidence 8888777776653
No 465
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=35.13 E-value=90 Score=17.90 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 028333 45 GELQRVNEQLRQINA 59 (210)
Q Consensus 45 ~~~~~l~~~l~~~~~ 59 (210)
+...+++++|+++-+
T Consensus 39 q~~~~~eqKLDrIIe 53 (58)
T PF13314_consen 39 QDVDSMEQKLDRIIE 53 (58)
T ss_pred cchhHHHHHHHHHHH
Confidence 333356666665544
No 466
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.24 E-value=2.3e+02 Score=22.15 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.++=..+...++++.|...-++.+.+.+. .+.-.-..|.+|.++|.++.|+..+...++..
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~------dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPE------DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCC------ChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 44556677888999999999998887554 34445678999999999999999999876655
No 467
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.03 E-value=1.1e+02 Score=28.09 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q 028333 103 TGKNFLRNQDLEKAFTEFK 121 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~ 121 (210)
.-.+|...|+|++|+++..
T Consensus 364 vWk~yLd~g~y~kAL~~ar 382 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIAR 382 (911)
T ss_pred HHHHHHhcchHHHHHHhcc
Confidence 3457888899998888654
No 468
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=33.86 E-value=58 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q 028333 156 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 192 (210)
Q Consensus 156 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 192 (210)
|...+++|++..++..+ ...+..|.++|.++..+|+
T Consensus 330 a~~l~~~Al~yL~kA~d-~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD-EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHHHHHH-S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHhhhhc
Confidence 44444455444433211 1122344444444444443
No 469
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.82 E-value=1.6e+02 Score=20.15 Aligned_cols=10 Identities=50% Similarity=0.976 Sum_probs=4.0
Q ss_pred HHHhHHHHHH
Q 028333 32 GATVGGLLAR 41 (210)
Q Consensus 32 g~~~~~~~~~ 41 (210)
|..++.++.+
T Consensus 18 Gi~IG~li~R 27 (138)
T COG3105 18 GIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 470
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.68 E-value=3.4e+02 Score=24.11 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhCCCcchH--------HHHHHHH-HHHHHcCCHHHHHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISE------REGEYSGST--------EAYGAIA-DCYTELGDLERAARFYDKY 203 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~--------~~~~~lg-~~y~~~g~~~~A~~~~~~a 203 (210)
=+-.||.+....+++..|.++|.++...-. ..++.++.. ...+|+| .+|...|++++..+.+.+.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 356789999999999999999999864432 122222111 1123333 3466777777777666543
No 471
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.62 E-value=2.5e+02 Score=22.21 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHh-CCCcchHH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYRE-AIKYHSMVLQISERE-GEYSGSTE 178 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-A~~~~~~al~~~~~~-~~~~~~~~ 178 (210)
+.-+.+++..++...|....--.++..+..... ....-..+++.+....+.-+. =..+.+.+++...+. ....+.+.
T Consensus 50 ~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~a-d~~~~~anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~ 128 (312)
T KOG3024|consen 50 YDGALCFFKLKQRGSAADLLVLVLEVLEKAEVA-DSLLKVANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPE 128 (312)
T ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhh-HhHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHH
Confidence 444555566666555555444333333320000 001111355555555444333 445667778877765 44567889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 179 AYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
.+..+|..+..-++..+|..+|-.+
T Consensus 129 lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 129 LHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHHHHHhcccHHHHHhHhhhc
Confidence 9999999999999999999998654
No 472
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=31.88 E-value=1.4e+02 Score=19.14 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+++...-+.-..+.|+|++|...++++
T Consensus 15 Ars~~~eAl~~a~~g~fe~A~~~l~ea 41 (97)
T cd00215 15 ARSKALEALKAAKEGDFAEAEELLEEA 41 (97)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444445556666665555555
No 473
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=31.55 E-value=3.3e+02 Score=24.91 Aligned_cols=134 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHH----HHHHHHHhcCChHHHHHHHH
Q 028333 66 KIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK----AALELAQNVKDPIEEKKAAR 141 (210)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~----~al~l~~~~~~~~~~~~~~~ 141 (210)
+.+.+.+++....+. +.+...+..+...+.........+. .+.|+ ++...+-++-..+...++.+
T Consensus 611 aYEFf~QAf~iYEE~---------IsDSk~Q~~aL~~ii~tL~~~r~~~--~Enyd~L~tk~t~yasKLLKK~DQCRaV~ 679 (762)
T PF03635_consen 611 AYEFFSQAFTIYEEE---------ISDSKAQFQALTLIIGTLQKTRSFS--EENYDTLITKCTLYASKLLKKPDQCRAVY 679 (762)
T ss_dssp HHHHHHHHHHHHHHH-----------SHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHC-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---------ccchHHHHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Q ss_pred HHHHHHHHcC----------CHHHHHHHHHHHHHHHHHhCCCcchHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333 142 GLGASLQRQG----------KYREAIKYHSMVLQISEREGEYSGSTEA---YGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 142 ~lg~~~~~~~----------~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.-+..+...+ |-++-+++++++++++...-+....... ..+....|+..|+..-..++...-++..+
T Consensus 680 ~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~ 759 (762)
T PF03635_consen 680 LCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIK 759 (762)
T ss_dssp HCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHh
Q ss_pred cC
Q 028333 209 SD 210 (210)
Q Consensus 209 ~~ 210 (210)
++
T Consensus 760 ~~ 761 (762)
T PF03635_consen 760 EN 761 (762)
T ss_dssp CC
T ss_pred cC
No 474
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=31.48 E-value=3.4e+02 Score=23.73 Aligned_cols=48 Identities=27% Similarity=0.278 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
|+.-.|+.-...|+.+.+ ....+++.|+.+...++.+.+|+++...+.
T Consensus 425 ~d~~~AlrDch~Alrln~------s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRLNP------SIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred ccHHHHHHhHHhhccCCh------HHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 445566666667666533 377889999999999999999998876553
No 475
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=31.22 E-value=2e+02 Score=22.03 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH
Q 028333 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE 136 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~ 136 (210)
...++.-++.+|..++..|++++|..++..+.-+...++.|...
T Consensus 110 A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P~Ha 153 (241)
T smart00770 110 AKDTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLGDLSTPYHA 153 (241)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34566677899999999999999999999999999888766554
No 476
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.89 E-value=1.4e+02 Score=21.50 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=37.8
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
...+-+....+.+-+.+..+.. -.+..+.+++.++...|+.++|.....++..+.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~----P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRR----PDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4445444444444444433321 146678889999999999999999999998776
No 477
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=30.86 E-value=1.5e+02 Score=19.10 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+++...-+.-..+.|+|++|...++++
T Consensus 17 Ars~~~eAl~~a~~gdfe~A~~~l~eA 43 (99)
T TIGR00823 17 ARSKALEALKAAKAGDFAKARALVEQA 43 (99)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444445555555555555555
No 478
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=30.61 E-value=1.7e+02 Score=19.69 Aligned_cols=66 Identities=14% Similarity=-0.024 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
...+..+...|...+++..|+.+.....+..+ +..+......+...+.+..... .+++..++.+.-
T Consensus 52 ~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~~-~~~~~~~~~~~~ 117 (126)
T PF12921_consen 52 SRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSKR-EDRAARYFLKCW 117 (126)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCCc-ccccHHHHhhhh
Confidence 34677788899999999999999999999888 7777666777777776665432 334445554443
No 479
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.29 E-value=3.7e+02 Score=23.46 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=58.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 182 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 182 (210)
+....-...+...+....++++....++..........+.-|.-++..++|.+|++....|++-.. |+ ++-.
T Consensus 485 ~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~ve-----PG---~~~r 556 (569)
T PRK04778 485 VETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVE-----PG---VTKR 556 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhC-----Cc---HHHH
Confidence 344444556677778888888888888877766777777788888899999999999999987752 33 4555
Q ss_pred HHHHHHH
Q 028333 183 IADCYTE 189 (210)
Q Consensus 183 lg~~y~~ 189 (210)
+-..|..
T Consensus 557 i~~~y~~ 563 (569)
T PRK04778 557 IEDSYEK 563 (569)
T ss_pred HHHHHHh
Confidence 5555554
No 480
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.23 E-value=77 Score=20.72 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333 179 AYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
-+..++..|...|.+++|++.+.+-.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466788888888888888887765443
No 481
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.75 E-value=4.5e+02 Score=25.50 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 028333 99 SRLKTGKNFLRNQDLEKAFTEFKAALE 125 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 125 (210)
..+.+|.+|...|+.-+|+..|.+|.+
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhh
Confidence 346688889999999999999998876
No 482
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=29.39 E-value=1.6e+02 Score=25.98 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333 118 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183 (210)
Q Consensus 118 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 183 (210)
++|.-++.++.+.+.. ...++..+|.++.+.+++..|.+-|+++++.. ..+.|....-..++
T Consensus 570 ErYqlaV~mckKc~iD--~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklk--gedipdvi~diin~ 631 (1141)
T KOG1811|consen 570 ERYQLAVEMCKKCGID--TFGAWHAWGLACLKAENLAAAREKFKQAFKLK--GEDIPDVIFDIINL 631 (1141)
T ss_pred HHHHHHHHHHhhcCCC--cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--CCccchHHHHHHHh
No 483
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.38 E-value=2.1e+02 Score=21.69 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=16.9
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHH
Q 028333 109 RNQDLEKAFTEFKAALELAQNVKDPIE 135 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~ 135 (210)
..++...|+.++++|+.+.++.|-...
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK~~ 216 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVKKD 216 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChHHH
Confidence 345666777777777777666554443
No 484
>PF14002 YniB: YniB-like protein
Probab=29.12 E-value=1.1e+02 Score=21.70 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=8.3
Q ss_pred hccCCCccchHHHHHHHH
Q 028333 13 CEADNSFFNMPLLLFVAL 30 (210)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (210)
...++.|+.+.+++++++
T Consensus 71 ~~~ni~F~vIy~liFvGl 88 (166)
T PF14002_consen 71 SGSNIMFWVIYLLIFVGL 88 (166)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 334455555444444443
No 485
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=29.03 E-value=1.6e+02 Score=18.82 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 136 EKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
.+++...-+.-....|+|++|...++++
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a 40 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEA 40 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455555555666666666666665
No 486
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=29.01 E-value=1.7e+02 Score=19.09 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+++...-+.-..+.|+|++|...++++
T Consensus 20 Ars~~~eAl~~ak~gdf~~A~~~l~eA 46 (104)
T PRK09591 20 ARTEVHEAFAAMREGNFDLAEQKLNQS 46 (104)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444445555666655555555
No 487
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=28.98 E-value=2e+02 Score=19.92 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 193 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 193 (210)
.....+...+..|+|.-|....+.++... +....+....+.+|..+|.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~ad------p~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFAD------PDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHh
Confidence 44566777788899999999998887764 55556677777777766543
No 488
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=28.83 E-value=1.8e+02 Score=19.38 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
++++..-+.-..+.|+|++|...++++
T Consensus 31 ArS~~~eAl~~Ak~gdfe~A~~~l~eA 57 (115)
T PRK10454 31 ARSLAYAALKQAKQGDFAAAKAMMDQS 57 (115)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444445555555555555555
No 489
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.61 E-value=1.7e+02 Score=18.96 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q 028333 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 192 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 192 (210)
......-|..-...||+++|.....++-+.. +.....|..-+..-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~------~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLS------DNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHcCC
Confidence 3444566888888999999999999994432 3334445555555555554
No 490
>COG4499 Predicted membrane protein [Function unknown]
Probab=28.05 E-value=3.5e+02 Score=22.43 Aligned_cols=124 Identities=12% Similarity=0.050 Sum_probs=59.7
Q ss_pred hcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHH---------HHHHHHHHHHhcCChHHHHH
Q 028333 68 ESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFT---------EFKAALELAQNVKDPIEEKK 138 (210)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~---------~~~~al~l~~~~~~~~~~~~ 138 (210)
+.+.+-+.+.+........-+-+|--...+.+.......|+..-...+|+. .|.+.+.-.+.++....--.
T Consensus 203 e~~~kn~a~VpK~k~~ifk~~giGliillvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 203 EKINKNYAFVPKKKYTIFKYFGIGLIILLVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHhcceeecccccceehhhHHHhHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 345666666655333222222222222233334445555555555555554 34555554444444444445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028333 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 199 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 199 (210)
+.+-++..|....+...... +.+. ++....++--+-+=++|...|++++|+..
T Consensus 283 v~Y~LA~SYV~~e~L~~~kk---eNi~-----NnislkSd~~~llYWi~~GRGe~~eAinI 335 (434)
T COG4499 283 VQYILAVSYVNLEDLTTTKK---ENIL-----NNISLKSDDNYLLYWIYSGRGEFKEAINI 335 (434)
T ss_pred HHHHHHHHHhhccccchHHH---HHHh-----hccccccchhHHHHHHHhcCccHHHHhhH
Confidence 77788888887655543321 1111 11122223334445566667777777654
No 491
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.89 E-value=1.4e+02 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 119 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 119 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
..++++.++.+.+-.......+..+|.-+.+.|+|-.|+.++-++-
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~ 452 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAG 452 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
Confidence 3467778888877777677777778888888888888888887774
No 492
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=27.67 E-value=1e+02 Score=25.48 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 028333 193 LERAARFYDKYI 204 (210)
Q Consensus 193 ~~~A~~~~~~al 204 (210)
|.+|...+.+|.
T Consensus 378 Y~eAE~iL~kAN 389 (404)
T PF12753_consen 378 YKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 493
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.51 E-value=2.2e+02 Score=19.88 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333 176 STEAYGAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
.+..+..+|..|.++|+..+|.+...+|-
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 44556666666666666666666655553
No 494
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=27.19 E-value=63 Score=24.61 Aligned_cols=46 Identities=13% Similarity=-0.003 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~ 149 (210)
..++.+|.++...++.-.|+-+|-+++-. ..+ -..+..|+...+..
T Consensus 17 ~p~nQLAvl~~~~~~~l~avy~y~Rsl~~----~~P--f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 17 NPYNQLAVLASYQGDDLDAVYYYIRSLAV----RIP--FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHSS----SB----HHHHHHHHHHHHH
T ss_pred CcccchhhhhccccchHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHH
Confidence 35788899999999999999888888742 111 24455555555554
No 495
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=26.70 E-value=4.4e+02 Score=23.13 Aligned_cols=106 Identities=11% Similarity=-0.020 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
.....+...+..-.......|+++...-.|++++--+-. -...+...+...-..|+.+-|-..+.++.++..
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-- 362 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL------YDEFWIKYARWMESSGDVSLANNVLARACKIHV-- 362 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC--
Confidence 334455666666677777889999999999988875544 344555566666666888888877887777752
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+.....+..-+..-...|++..|...+++..+-.
T Consensus 363 ---k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 363 ---KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred ---CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 3444556666666677888888888888776543
No 496
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.16 E-value=50 Score=30.61 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 028333 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL 147 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~ 147 (210)
.+....|+.++-.|.+..|++.|..|+++.+..+|..+.+.++-+...|.
T Consensus 246 R~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tVC~ 295 (1235)
T KOG1953|consen 246 RIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTVCL 295 (1235)
T ss_pred HHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhHHH
Confidence 34566788888889999999999999999999999888877776644443
No 497
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=1e+02 Score=26.45 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 028333 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK 138 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~ 138 (210)
.+.-++.+|..|...++|.+|+..|.++........+......
T Consensus 421 kafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~ 463 (593)
T KOG2460|consen 421 KAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFK 463 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh
No 498
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=25.63 E-value=1e+02 Score=17.11 Aligned_cols=19 Identities=16% Similarity=0.557 Sum_probs=10.5
Q ss_pred ccchHHHHHHHHHHHHhHH
Q 028333 19 FFNMPLLLFVALIGATVGG 37 (210)
Q Consensus 19 ~~~~~~~~~~~~~g~~~~~ 37 (210)
+..++++++.+++|..++.
T Consensus 4 ~~iV~i~iv~~lLg~~I~~ 22 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICT 22 (50)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655544
No 499
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.69 E-value=1.8e+02 Score=25.76 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=35.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333 148 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 148 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.+.|+++.|.+...++- ...=|..+|+.....+++..|.+++.++.+.
T Consensus 648 l~lgrl~iA~~la~e~~-----------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----------SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----------chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 45666666665554441 1234778999999999999999999998764
No 500
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=24.56 E-value=3.6e+02 Score=21.40 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..-+......+..+.|+..++..+. ..............++.++...|.++-|..++++..+..+...-....+
T Consensus 217 ~~eA~~l~~~~gl~~Al~~L~~~~~---~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP 290 (301)
T TIGR03362 217 REEARALAAEGGLEAALQRLQQRLA---QAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEP 290 (301)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcc---cCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccCh
Confidence 3446667778888888888776544 2334555666777889999999999999999999988877654433333
Done!