BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028334
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 73 QAEKDFFSVVKASDRVVCHFYRENWP-CKVMDKHMSILAKKHIETRFVKIHAEKSPFLAE 131
AEKD + VV H YR + P C V+++H+S+LA+K ET+FVK E
Sbjct: 26 NAEKDLW--------VVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSC---IE 74
Query: 132 RLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180
LPT+ + KN +++ +G E GG + EELE +L++ I
Sbjct: 75 HYHDNCLPTIFVYKNGQIEGKFIGIIECGGIN-LKLEELEWKLSEVGAI 122
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 77 DFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLK 134
+F +++K +D++V FY W PCK+M H++ L + + + RFVK ++SP +A+ +
Sbjct: 22 EFRNLIKQNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECE 80
Query: 135 IVVLPTLALIKNAKVDDYVVG 155
+ +PT L K+ ++ ++G
Sbjct: 81 VTAMPTFVLGKDGQLIGKIIG 101
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
Length = 118
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 67 GDYSEIQAEKDFFSVVKASD--RVVCHFYRENWP-CKVMDKHMSILAKKHIETRFVKIHA 123
G+ EI + V A + V+ H YR + P C ++++H+S+LA+K ET+FVK
Sbjct: 3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIV 62
Query: 124 EKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180
+ LPT+ + KN +++ +G E GG + EELE +LA+ I
Sbjct: 63 NSC---IQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGIN-LKLEELEWKLAEVGAI 115
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 82 VKASDRVVCHFYRENWP-CKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPT 140
+KA +V HF+ P C M++ M+ LAK+ + FVK+ AE P ++E+ +I +PT
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPT 94
Query: 141 LALIKNAKVDDYVVG 155
KN++ D + G
Sbjct: 95 FLFFKNSQKIDRLDG 109
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 82 VKASDRVVCHFYRENWP-CKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPT 140
+KA +V HF+ P C M++ M+ LAK+ + FVK+ AE P ++E+ +I +PT
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPT 88
Query: 141 LALIKNAKVDDYVVG 155
KN++ D + G
Sbjct: 89 FLFFKNSQKIDRLDG 103
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 76 KDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERL 133
K+F + + VV F+ E W PC ++ + LA + + F K++ E+S +A R
Sbjct: 14 KNFDEFITKNKIVVVDFWAE-WCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRY 72
Query: 134 KIVVLPTLALIKNAKVDDYVVG 155
I+ LPT+ KN ++ D ++G
Sbjct: 73 GIMSLPTIMFFKNGELVDQILG 94
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 72 IQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFL 129
+ K+ F K S +++ + +W PCK++ + LAKK F+K+ ++ +
Sbjct: 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAV 71
Query: 130 AERLKIVVLPTLALIKNAKVDDYVVGFDELG 160
AE + +PT +K+ K+ D VG D+ G
Sbjct: 72 AEEWNVEAMPTFIFLKDGKLVDKTVGADKDG 102
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 76 KDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERL 133
K+F S + + + V F+ E W PC ++ + LA+ + + F K++++++P +A R
Sbjct: 7 KNFDSFLASHEIAVVDFWAE-WCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARY 65
Query: 134 KIVVLPTLALIKNAKVDDYVVG 155
++ LPT+ K+ + D ++G
Sbjct: 66 GVMSLPTVIFFKDGEPVDEIIG 87
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 93 YRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150
+ +W PC++M + LAKK F+K+ ++ +AE+ + +PT +K V
Sbjct: 41 FTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 100
Query: 151 DYVVG 155
D VVG
Sbjct: 101 DRVVG 105
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 98 PCKVMDKHMS-ILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGF 156
PC+ + A++ + RFVK++ E P L+ R +I +PT+ L +N K D + G
Sbjct: 69 PCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRNGKXIDXLNGA 128
Query: 157 DELGGTDEFSTEEL 170
D + E+L
Sbjct: 129 VPKAPFDNWLDEQL 142
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 79 FSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIV 136
F + + D + ++ W PCK +++ M +A + +F K+ A+ + + + +++
Sbjct: 30 FRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVL 89
Query: 137 VLPTLALIKNAKVDDYVVG 155
LPT + ++ K+ +V+G
Sbjct: 90 QLPTFIIARSGKMLGHVIG 108
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 84 ASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTL 141
A D++V + W PCK++ L++K+ F+++ + + +A + I +PTL
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTL 77
Query: 142 ALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
L KN +V VG G EF L
Sbjct: 78 LLFKNGEVAATKVGALSKGQLKEFLDANL 106
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 78 FFSVVKAS-DRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHA-EKSPFLAERL 133
F+ +VKA+ D+ V W PCK M LA+++++ F+K+ +++ LA+ L
Sbjct: 28 FWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKEL 87
Query: 134 KIVVLPTLALIKNAKVDDYVVG--FDEL 159
I V+PT ++K V V G +D+L
Sbjct: 88 GIRVVPTFKILKENSVVGEVTGAKYDKL 115
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 67 GDYSEIQAEKDFFSVVKAS-DRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHA 123
G +E+ + F+ +VKA+ D+ V W PCK M LA+++++ F+K+
Sbjct: 6 GKVTEVNKDT-FWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDC 64
Query: 124 -EKSPFLAERLKIVVLPTLALIKNAKVDDYVVG--FDEL 159
+++ LA+ L I V+PT ++K V V G +D+L
Sbjct: 65 NQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKL 103
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 93 YRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150
+ +W PC+ + + LAKK F+K+ ++ +A I +PT +K K+
Sbjct: 45 FTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKIL 104
Query: 151 DYVVGF--DELGGT 162
D VVG DEL T
Sbjct: 105 DKVVGAKKDELQST 118
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 72 IQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFL 129
+ ++ +F S++ ++ V+ F+ E W PCK + +K + + F+K+ ++ +
Sbjct: 13 VTSQAEFDSIISQNELVIVDFFAE-WCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEV 71
Query: 130 AERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175
E+ I +PT + KN D L G ++ + ++L E+ A
Sbjct: 72 TEKENITSMPTFKVYKNGS------SVDTLLGANDSALKQLIEKYA 111
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 70 SEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSP 127
++ + +F S + VV FY W PCK++ + ++++ + F K+ ++
Sbjct: 3 TQFKTASEFDSAIAQDKLVVVDFYA-TWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 61
Query: 128 FLAERLKIVVLPTLALIKNAKVDDYVVG 155
+A++ ++ +PTL L KN K VVG
Sbjct: 62 DVAQKNEVSAMPTLLLFKNGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 70 SEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSP 127
++ + +F S + VV FY W PCK++ + ++++ + F K+ ++
Sbjct: 9 TQFKTASEFDSAIAQDKLVVVDFYA-TWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 67
Query: 128 FLAERLKIVVLPTLALIKNAKVDDYVVG 155
+A++ ++ +PTL L KN K VVG
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 26 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 84
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFL 182
+PTL L KN +V VG G EF L ++ V+ L
Sbjct: 85 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMESTVMVL 129
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 93 YRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150
+ +W P ++M + LAKK F+K+ ++ +AE+ + +PT +K V
Sbjct: 44 FTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 103
Query: 151 DYVVG 155
D VVG
Sbjct: 104 DRVVG 108
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 72 IQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHM-SILAKKHIETRFVKIHAEKSPF 128
IQ DF V S+ V + W PCK++ + ++AK+H + K+ +
Sbjct: 17 IQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD 76
Query: 129 LAERLKIVVLPTLALIKNAKVDDYVVGF 156
LA ++ +PT+ +KN V D VG
Sbjct: 77 LAIEYEVSAVPTVLAMKNGDVVDKFVGI 104
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 71 EIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETR--FVKIHAEKS 126
++ + D F V D+VV + W PCK++ ++ + F K+ ++
Sbjct: 18 QVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ 77
Query: 127 PFLAERLKIVVLPTLALIKNAKVDDYVVGFD 157
+A+ + I +PT KN + D VVG D
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQKIDTVVGAD 108
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 70 SEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSP 127
+++++ ++ S + + D++V + W PCK++ + A+++ + F K+ ++
Sbjct: 3 TQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVS 62
Query: 128 FLAERLKIVVLPTLALIKNAKVDDYVVG 155
+A++ ++ +PTL K K VVG
Sbjct: 63 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 70 SEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSP 127
+++++ ++ S + + D++V + W PCK++ + A+++ + F K+ ++
Sbjct: 10 TQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVS 69
Query: 128 FLAERLKIVVLPTLALIKNAKVDDYVVG 155
+A++ ++ +PTL K K VVG
Sbjct: 70 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 97
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 75 EKDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERL 133
+ DF S V++ ++V + PCK++ + LA + + +K+ +++P A +
Sbjct: 10 DADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 69
Query: 134 KIVVLPTLALIKNAKVDDYVVGF 156
+++ +PTL + K+ + D VVGF
Sbjct: 70 EVMSIPTLIVFKDGQPVDKVVGF 92
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A+++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRS 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 75 EKDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERL 133
+ DF S V++ ++V + PCK++ + LA + + +K+ +++P A +
Sbjct: 11 DADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 70
Query: 134 KIVVLPTLALIKNAKVDDYVVGF 156
+++ +PTL + K+ + D VVGF
Sbjct: 71 EVMSIPTLIVFKDGQPVDKVVGF 93
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 88 VVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145
+V F+ + W PC+ + + LAK+ E F K+ +++ A + + +PT IK
Sbjct: 22 IVVDFFAQ-WCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK 80
Query: 146 NAKVDDYVVGFDE 158
+ K D G +E
Sbjct: 81 DGKEVDRFSGANE 93
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 17 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 75
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177
PTL L KN +V VG G EF L+ LA A
Sbjct: 76 TPTLLLFKNGEVAATKVGALSKGQLKEF----LDANLAAA 111
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAE 131
+ +F ++ V+ F+ W PC++M + A+ H + K++ +++P
Sbjct: 7 DANFQQAIQGDGPVLVDFWAA-WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTS 65
Query: 132 RLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175
+ I+ +PTL L K + ++G+ E+LE +LA
Sbjct: 66 QFGIMSIPTLILFKGGRPVKQLIGYQ--------PKEQLEAQLA 101
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAACKVGALSKGQLKEFLDANL 107
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 81 VVKASDRVVCHFYRENW---PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIV 136
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR 74
Query: 137 VLPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN V VG G EF L
Sbjct: 75 IPTLLLFKNGDVAATKVGALSKGQLKEFLDANL 107
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A + + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHI-ETRFVKIHAEKSPFLAE 131
EK F V + + F+ W PC+++ + LA+ H + VK++ ++ P LA
Sbjct: 40 EKGFAQEVAGAPLTLVDFF-APWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAA 98
Query: 132 RLKIVVLPTLALI-KNAKVDDYV 153
R + +PTL L + A V +V
Sbjct: 99 RYGVRSVPTLVLFRRGAPVATWV 121
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVV 137
V+KA V+ +F+ +W PC++M +++ A + + + VK+ + +P ++ K+
Sbjct: 21 VLKAEQPVLVYFWA-SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEG 79
Query: 138 LPTLALIKNAKVDDYVVG 155
+P L L+K ++ D G
Sbjct: 80 VPALRLVKGEQILDSTEG 97
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 88 VVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145
VV FY W PCK++ + L++ + F+K+ ++ +A+ +I +PT +K
Sbjct: 23 VVIDFYA-TWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMK 81
Query: 146 NAKVDDYVVG--FDEL 159
N + D + G +D+L
Sbjct: 82 NGQKLDSLSGANYDKL 97
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAE 131
+ +F ++ V+ F+ W PC++M + A+ H + K++ +++P
Sbjct: 7 DANFQQAIQGDGPVLVDFWAA-WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTS 65
Query: 132 RLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175
+ I+ +PTL L K + ++G+ E+LE +LA
Sbjct: 66 QFGIMSIPTLILFKGGEPVKQLIGYQ--------PKEQLEAQLA 101
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAE 131
+ +F ++ V+ F+ W PC++M + A+ H + K++ +++P
Sbjct: 7 DANFQQAIQGDKPVLVDFWAA-WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTS 65
Query: 132 RLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175
+ I+ +PTL L K + ++G+ E+LE +LA
Sbjct: 66 QFGIMSIPTLILFKGGRPVKQLIGYQ--------PKEQLEAQLA 101
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVG 155
+PTL L KN +V VG
Sbjct: 75 IPTLLLFKNGEVAATKVG 92
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 83 KASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPT 140
K + +VV + +W PC+ + + AKK F+K+ ++ +AE+ + +PT
Sbjct: 33 KEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPT 92
Query: 141 LALIKNAKVDDYVVG 155
IK+ D VVG
Sbjct: 93 FLFIKDGAEADKVVG 107
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 59 NRWISLGHGDYSEIQAEKD--FFSVVKASDRVVCHFYRENW--PCKVMDKHMS-ILAKKH 113
+RW S+ + S D F + V +S++ V + W PCK++ + I ++
Sbjct: 1 DRWGSMTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA 60
Query: 114 IETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVG 155
+ K+ + +P A ++V +PTL L K+ + +VG
Sbjct: 61 TDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVG 102
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PCK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVG 155
+PTL L KN +V VG
Sbjct: 75 IPTLLLFKNGEVAATKVG 92
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 93 YRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150
+ +W PC+V+ + AKK F+K+ ++ +AE + +PT IK+ +
Sbjct: 35 FTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKV 94
Query: 151 DYVVG 155
D VVG
Sbjct: 95 DSVVG 99
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAE 131
+ +F ++ V+ F+ W PC++M + A+ H + K++ +++P
Sbjct: 7 DANFQQAIQGDKPVLVDFWAA-WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTS 65
Query: 132 RLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175
+ I+ +PTL L K + ++G+ E+LE +LA
Sbjct: 66 QFGIMSIPTLILFKGGEPVKQLIGYQ--------PKEQLEAQLA 101
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W PC+++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 70 SEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSP 127
++ + +F S + VV FY W P K++ + ++++ + F K+ ++
Sbjct: 9 TQFKTASEFDSAIAQDKLVVVDFYA-TWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELG 67
Query: 128 FLAERLKIVVLPTLALIKNAKVDDYVVG 155
+A++ ++ +PTL L KN K VVG
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 70 SEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSP 127
+++++ ++ S + + D++V + W P K++ + A+++ + F K+ ++
Sbjct: 11 TQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVS 70
Query: 128 FLAERLKIVVLPTLALIKNAKVDDYVVG 155
+A++ ++ +PTL K K VVG
Sbjct: 71 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 98
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAE 131
+++F V SD+ V + W PC+++ + LAK++ + + VK++ +++P A
Sbjct: 8 DENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAA 67
Query: 132 RLKIVVLPTLALIKNAKVDDYVVG 155
+ I +PTL L KN +V D +VG
Sbjct: 68 QYGIRSIPTLLLFKNGQVVDRLVG 91
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 70 SEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSP 127
+++++ ++ S + + D++V + W P K++ + A+++ + F K+ ++
Sbjct: 3 TQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVS 62
Query: 128 FLAERLKIVVLPTLALIKNAKVDDYVVG 155
+A++ ++ +PTL K K VVG
Sbjct: 63 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 88 VVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145
VV F+ W PCK + L++K+ + FVK+ +K A + I +PT IK
Sbjct: 36 VVVDFFA-TWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93
Query: 146 NA-KVDDYV 153
N KV D V
Sbjct: 94 NGEKVGDVV 102
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 75 EKDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERL 133
+ DF S V++ ++V + CK++ + LA + + +K+ +++P A +
Sbjct: 10 DADFDSKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 69
Query: 134 KIVVLPTLALIKNAKVDDYVVGF 156
+++ +PTL + K+ + D VVGF
Sbjct: 70 EVMSIPTLIVFKDGQPVDKVVGF 92
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMS-ILAKKHIETRFVKIHAEKSPFLAE 131
+ F + V +S++ V + W PCK++ + I ++ + K+ + +P A
Sbjct: 14 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETAR 73
Query: 132 RLKIVVLPTLALIKNAKVDDYVVG 155
++V +PTL L K+ + +VG
Sbjct: 74 NFQVVSIPTLILFKDGQPVKRIVG 97
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 75 EKDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERL 133
+ DF S V++ ++V + CK++ + LA + + +K+ +++P A +
Sbjct: 11 DADFDSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 70
Query: 134 KIVVLPTLALIKNAKVDDYVVGF 156
+++ +PTL + K+ + D VVGF
Sbjct: 71 EVMSIPTLIVFKDGQPVDKVVGF 93
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 88 VVCHFYRENW--PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145
VV F+ W PCK + L++K+ + FVK+ +K A + I +PT IK
Sbjct: 27 VVVDFFA-TWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 84
Query: 146 NA-KVDDYV 153
N KV D V
Sbjct: 85 NGEKVGDVV 93
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W P K++ + +A ++ + K++ +++P A + I
Sbjct: 36 VLKADGAILVDFWAE-WCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 94
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 95 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W P K++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
+VKA ++ F+ E W PCK++ + +A ++ + K++ +++P A +
Sbjct: 16 LVKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEF 165
+PTL L KN +V VG G EF
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 98 PCKVMDKHMSILAKKHI-ETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVG 155
PCK++ + LAK++ + K++ +++P +A + I +PT+ KN + + ++G
Sbjct: 32 PCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 98 PCKVMDKHMSILAKKHI-ETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVG 155
PCK++ + LAK++ + K++ +++P +A + I +PT+ KN + + ++G
Sbjct: 31 PCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIG 89
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 79 FSVVKASDR---------VVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKS 126
++VKA+D+ VV + W PCK++ + L ++ + + VKI +++
Sbjct: 1 MAIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 127 PFLAERLKIVVLPTLALIKNAKVDDYVVGF 156
A + ++ +PTL ++K+ +V + VGF
Sbjct: 61 QETAGKYGVMSIPTLLVLKDGEVVETSVGF 90
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENWP--CKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W CK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 75 EKDFFSVVKASDRVVCHFYRENWP--CKVM----DKHMSILAKKHIETRFVKIHAEKSPF 128
+ +F + V D V+ FY W CK +K +IL K KI A +
Sbjct: 22 DANFDNFVADKDTVLLEFYAP-WCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV 80
Query: 129 LAERLKIVVLPTLALIKNAKVDDY 152
LA R + PT+ ++K + DY
Sbjct: 81 LASRFDVSGYPTIKILKKGQAVDY 104
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 81 VVKASDRVVCHFYRENWP--CKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVV 137
V+KA ++ F+ E W CK++ + +A ++ + K++ +++P A + I
Sbjct: 16 VLKADGAILVDFWAE-WCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 74
Query: 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+PTL L KN +V VG G EF L
Sbjct: 75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 81 VVKASDRVVCHFYRENWPCKVMDKHM--SILAKKHIETRFVKIHAEKSPFLAERLKIVVL 138
V+KA ++ F+ E C M + I + + K++ +++P A + I +
Sbjct: 16 VLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGI 75
Query: 139 PTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
PTL L KN +V VG G EF L
Sbjct: 76 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVV 137
V+K V+ F+ W PC+ + + +A ++ + VK++ +++P A + ++
Sbjct: 19 VLKNDKPVLVDFWAA-WCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMS 77
Query: 138 LPTLALIKNAKVDDYVVG 155
+PTL + + +V +VG
Sbjct: 78 IPTLNVYQGGEVAKTIVG 95
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 81 VVKASDRVVCHFYRENW----------------PCKVMDKHMSILAKKH-IETRFVKIHA 123
V+KA ++ F+ E W PCK++ + +A ++ + K++
Sbjct: 17 VLKADGAILVDFWAE-WCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNI 75
Query: 124 EKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170
+++P A + I +PTL L KN +V VG G EF L
Sbjct: 76 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 118 FVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGF 156
+K+ +++P A + +++ +PTL + K+ + D VVGF
Sbjct: 55 ILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGF 93
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 81 VVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVV 137
V+++S V+ F+ W PC+++ + +A ++ + + VK++ ++SP +A I
Sbjct: 15 VLESSVPVLVDFWAP-WCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRS 73
Query: 138 LPTLALIKNAKVDDYVVG 155
+PT+ + K K + ++G
Sbjct: 74 IPTIMVFKGGKKCETIIG 91
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFV-KIHAEKSPFLAE 131
+++F + V+ F+ E W PC+ + + +AK++ V K+ +++P A
Sbjct: 9 DQNFDETLGQHPLVLVDFWAE-WCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAX 67
Query: 132 RLKIVVLPTLALIKNAKVDDYVVG 155
R ++ +PT+ L K+ + + +VG
Sbjct: 68 RYRVXSIPTVILFKDGQPVEVLVG 91
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHIETRFV-KIHAEKSPFLAE 131
+++F + V+ F+ E W PC+ + + +AK++ V K+ +++P A
Sbjct: 8 DQNFDETLGQHPLVLVDFWAE-WCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAX 66
Query: 132 RLKIVVLPTLALIKNAKVDDYVVG 155
R ++ +PT+ L K+ + + +VG
Sbjct: 67 RYRVXSIPTVILFKDGQPVEVLVG 90
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 85 SDRVVCHFYRENWP-CKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLAL 143
SD +V F++ P CK M+K + + + + +E P L + L +PTL
Sbjct: 20 SDAIV-FFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVF 78
Query: 144 IKNAKVDDYVVG 155
I++ KV G
Sbjct: 79 IRDGKVAKVFSG 90
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 68 DYSEIQAEKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMSILAKKHI-ETRFVKIHAE 124
D + + E++F V++ + V+ + E W PC + + +A+K+ + F +++ +
Sbjct: 4 DVTLVLTEENFDEVIRNNKLVLVDCWAE-WCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD 62
Query: 125 KSPFLAERLKIVVLPTLALIKNAKVDDYVVG 155
++ +A++ ++ +PT + N ++ D +VG
Sbjct: 63 ENQKIADKYSVLNIPTTLIFVNGQLVDSLVG 93
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 75 EKDFFSVVKASDRVVCHFYRENW--PCKVMDKHMS-ILAKKHIETRFVKIHAEKSPFLAE 131
+ F + V +S++ V + W P K++ + I ++ + K+ + +P A
Sbjct: 16 DASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETAR 75
Query: 132 RLKIVVLPTLALIKNAKVDDYVVG 155
++V +PTL L K+ + +VG
Sbjct: 76 NFQVVSIPTLILFKDGQPVKRIVG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,038,112
Number of Sequences: 62578
Number of extensions: 172886
Number of successful extensions: 604
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 91
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)