Query 028334
Match_columns 210
No_of_seqs 193 out of 2023
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1672 ATP binding protein [P 100.0 4.2E-37 9.1E-42 237.5 19.0 204 6-210 5-211 (211)
2 cd02988 Phd_like_VIAF Phosduci 100.0 2.5E-33 5.4E-38 222.9 20.6 153 15-178 34-192 (192)
3 cd02987 Phd_like_Phd Phosducin 100.0 2E-33 4.3E-38 220.7 16.6 146 26-178 23-175 (175)
4 PF02114 Phosducin: Phosducin; 100.0 5.5E-30 1.2E-34 212.4 17.1 170 27-210 88-263 (265)
5 KOG3170 Conserved phosducin-li 100.0 2.9E-27 6.3E-32 183.6 16.9 193 7-210 33-238 (240)
6 cd02989 Phd_like_TxnDC9 Phosdu 99.9 2.1E-26 4.4E-31 168.7 15.3 111 65-175 2-113 (113)
7 cd02957 Phd_like Phosducin (Ph 99.9 2E-24 4.4E-29 158.0 13.2 108 65-175 2-113 (113)
8 KOG0910 Thioredoxin-like prote 99.9 1.1E-23 2.4E-28 158.3 11.6 101 69-177 44-147 (150)
9 PHA02278 thioredoxin-like prot 99.9 4E-22 8.8E-27 143.5 12.9 93 73-173 2-100 (103)
10 cd02985 TRX_CDSP32 TRX family, 99.9 5.8E-22 1.3E-26 142.7 13.6 97 73-178 1-103 (103)
11 cd02954 DIM1 Dim1 family; Dim1 99.9 5E-22 1.1E-26 144.7 12.0 84 75-158 2-89 (114)
12 KOG0907 Thioredoxin [Posttrans 99.9 8.2E-22 1.8E-26 142.3 12.4 92 77-177 12-105 (106)
13 PF00085 Thioredoxin: Thioredo 99.9 1.9E-21 4.2E-26 138.5 14.0 100 69-177 1-103 (103)
14 cd03065 PDI_b_Calsequestrin_N 99.9 2.1E-21 4.5E-26 143.2 12.5 103 64-176 6-117 (120)
15 cd02948 TRX_NDPK TRX domain, T 99.9 1.4E-20 3.1E-25 135.2 13.6 96 71-176 3-101 (102)
16 KOG3171 Conserved phosducin-li 99.9 4.4E-21 9.5E-26 150.7 11.5 174 4-186 70-258 (273)
17 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 6.6E-21 1.4E-25 136.4 11.1 97 68-173 2-100 (101)
18 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.1E-20 2.3E-25 138.2 11.9 99 66-173 8-112 (113)
19 COG3118 Thioredoxin domain-con 99.9 4.6E-21 9.9E-26 158.3 10.7 104 68-180 24-132 (304)
20 cd02965 HyaE HyaE family; HyaE 99.8 3.5E-20 7.5E-25 134.2 12.3 89 68-157 11-103 (111)
21 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.3E-20 5E-25 134.0 11.2 98 68-174 2-104 (104)
22 PLN00410 U5 snRNP protein, DIM 99.8 3.9E-20 8.5E-25 139.7 12.6 108 69-176 5-118 (142)
23 PRK10996 thioredoxin 2; Provis 99.8 9E-20 2E-24 138.2 14.2 102 67-177 35-138 (139)
24 PTZ00051 thioredoxin; Provisio 99.8 7.2E-20 1.6E-24 129.9 11.8 89 69-157 2-91 (98)
25 cd02956 ybbN ybbN protein fami 99.8 9.8E-20 2.1E-24 128.9 12.1 91 77-175 2-96 (96)
26 PRK09381 trxA thioredoxin; Pro 99.8 1.7E-19 3.8E-24 130.6 13.4 101 68-177 4-107 (109)
27 KOG0908 Thioredoxin-like prote 99.8 3.6E-20 7.8E-25 148.8 10.5 100 69-177 3-105 (288)
28 cd02963 TRX_DnaJ TRX domain, D 99.8 1.4E-19 3E-24 132.0 11.7 98 70-176 7-110 (111)
29 cd02984 TRX_PICOT TRX domain, 99.8 2.1E-19 4.5E-24 127.2 12.3 92 74-174 1-96 (97)
30 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.6E-19 3.6E-24 130.7 11.5 98 68-174 2-108 (108)
31 cd02994 PDI_a_TMX PDIa family, 99.8 2.7E-19 5.9E-24 127.8 12.2 97 68-176 2-101 (101)
32 cd03005 PDI_a_ERp46 PDIa famil 99.8 2.2E-19 4.9E-24 128.0 11.6 96 69-174 2-102 (102)
33 cd02962 TMX2 TMX2 family; comp 99.8 9.8E-19 2.1E-23 134.1 14.1 108 66-174 27-148 (152)
34 cd02999 PDI_a_ERp44_like PDIa 99.8 3.4E-19 7.4E-24 127.7 10.3 89 77-174 8-100 (100)
35 cd02950 TxlA TRX-like protein 99.8 1.7E-18 3.7E-23 131.6 13.5 96 74-177 9-109 (142)
36 cd02986 DLP Dim1 family, Dim1- 99.8 9.8E-19 2.1E-23 126.7 11.3 82 75-156 2-87 (114)
37 cd02997 PDI_a_PDIR PDIa family 99.8 1.4E-18 3.1E-23 124.1 11.5 97 69-174 2-104 (104)
38 TIGR01068 thioredoxin thioredo 99.8 2.2E-18 4.8E-23 122.1 12.4 96 74-177 2-100 (101)
39 TIGR01295 PedC_BrcD bacterioci 99.8 6.8E-18 1.5E-22 125.1 13.2 99 68-175 7-121 (122)
40 cd03002 PDI_a_MPD1_like PDI fa 99.8 3.3E-18 7.2E-23 123.5 11.0 97 69-174 2-108 (109)
41 cd03001 PDI_a_P5 PDIa family, 99.8 6.9E-18 1.5E-22 120.5 11.9 97 69-174 2-102 (103)
42 PTZ00443 Thioredoxin domain-co 99.8 7.6E-18 1.6E-22 136.8 13.3 102 67-177 30-138 (224)
43 TIGR01126 pdi_dom protein disu 99.8 5.9E-18 1.3E-22 120.3 11.0 96 74-177 2-101 (102)
44 cd02975 PfPDO_like_N Pyrococcu 99.8 1.5E-17 3.2E-22 121.8 12.1 92 77-176 14-108 (113)
45 cd02953 DsbDgamma DsbD gamma f 99.8 4.1E-18 8.9E-23 122.4 8.8 92 76-175 2-104 (104)
46 cd02949 TRX_NTR TRX domain, no 99.8 2.3E-17 4.9E-22 117.3 12.4 88 80-175 7-97 (97)
47 PTZ00062 glutaredoxin; Provisi 99.7 2.4E-17 5.2E-22 132.0 12.0 87 74-177 5-93 (204)
48 cd02961 PDI_a_family Protein D 99.7 1.9E-17 4.2E-22 116.5 9.9 95 71-174 2-101 (101)
49 cd03000 PDI_a_TMX3 PDIa family 99.7 3.5E-17 7.6E-22 117.7 10.6 93 75-177 6-103 (104)
50 cd02947 TRX_family TRX family; 99.7 1.5E-16 3.3E-21 109.8 12.1 90 77-174 2-92 (93)
51 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 6.1E-17 1.3E-21 115.5 10.3 96 69-174 2-104 (104)
52 cd02998 PDI_a_ERp38 PDIa famil 99.7 6E-17 1.3E-21 115.7 9.9 97 69-174 2-105 (105)
53 cd02993 PDI_a_APS_reductase PD 99.7 2.4E-16 5.3E-21 114.4 11.0 99 68-174 2-109 (109)
54 cd02951 SoxW SoxW family; SoxW 99.7 1.3E-15 2.9E-20 112.9 11.7 94 75-176 3-117 (125)
55 cd02992 PDI_a_QSOX PDIa family 99.7 1.4E-15 3.1E-20 111.4 11.2 88 68-157 2-97 (114)
56 KOG0190 Protein disulfide isom 99.6 7.2E-16 1.6E-20 136.4 8.8 103 66-177 24-131 (493)
57 TIGR01130 ER_PDI_fam protein d 99.6 6.1E-15 1.3E-19 131.1 12.8 101 68-177 2-108 (462)
58 PTZ00102 disulphide isomerase; 99.6 7.5E-15 1.6E-19 131.5 13.2 101 67-177 32-137 (477)
59 PTZ00102 disulphide isomerase; 99.6 9E-15 2E-19 131.0 12.6 106 66-180 356-467 (477)
60 TIGR00424 APS_reduc 5'-adenyly 99.6 1.6E-14 3.4E-19 128.3 12.4 101 67-176 351-461 (463)
61 cd02952 TRP14_like Human TRX-r 99.6 1.3E-14 2.8E-19 106.8 9.2 77 72-148 6-101 (119)
62 TIGR00411 redox_disulf_1 small 99.6 3.3E-14 7.1E-19 97.3 10.7 76 89-176 3-80 (82)
63 cd03007 PDI_a_ERp29_N PDIa fam 99.6 2.8E-14 6E-19 104.3 9.7 99 69-178 3-116 (116)
64 PLN02309 5'-adenylylsulfate re 99.6 4.4E-14 9.6E-19 125.3 12.8 101 67-176 345-455 (457)
65 cd02982 PDI_b'_family Protein 99.6 3.2E-14 7E-19 101.5 9.7 85 85-177 12-102 (103)
66 TIGR02187 GlrX_arch Glutaredox 99.5 5E-14 1.1E-18 114.1 11.1 93 77-177 12-110 (215)
67 KOG0190 Protein disulfide isom 99.5 1.6E-14 3.6E-19 127.8 8.6 129 40-179 338-474 (493)
68 PHA02125 thioredoxin-like prot 99.5 7.8E-14 1.7E-18 94.6 9.9 71 89-174 2-73 (75)
69 cd02959 ERp19 Endoplasmic reti 99.5 1E-13 2.2E-18 102.0 8.4 81 77-157 11-97 (117)
70 TIGR02187 GlrX_arch Glutaredox 99.5 4.3E-13 9.3E-18 108.7 12.3 78 88-176 136-214 (215)
71 TIGR00412 redox_disulf_2 small 99.5 3.6E-13 7.7E-18 91.6 9.7 72 89-174 2-75 (76)
72 TIGR01130 ER_PDI_fam protein d 99.5 2.8E-13 6.1E-18 120.4 11.7 104 66-180 345-456 (462)
73 PRK11509 hydrogenase-1 operon 99.4 2.4E-12 5.3E-17 95.9 12.3 99 69-176 19-122 (132)
74 cd02955 SSP411 TRX domain, SSP 99.4 1.7E-12 3.7E-17 96.3 11.2 99 74-175 4-116 (124)
75 cd02973 TRX_GRX_like Thioredox 99.4 1.1E-12 2.4E-17 86.6 8.7 61 89-151 3-64 (67)
76 PRK00293 dipZ thiol:disulfide 99.4 1.2E-12 2.5E-17 120.1 11.5 102 68-177 453-569 (571)
77 cd03010 TlpA_like_DsbE TlpA-li 99.4 1.9E-12 4.1E-17 96.0 9.9 79 78-157 18-121 (127)
78 PF13098 Thioredoxin_2: Thiore 99.4 9.3E-13 2E-17 95.4 7.1 83 84-174 4-112 (112)
79 TIGR02738 TrbB type-F conjugat 99.4 4.9E-12 1.1E-16 97.2 11.4 87 81-176 46-151 (153)
80 PRK14018 trifunctional thiored 99.4 3.5E-12 7.6E-17 114.7 11.9 84 84-175 55-170 (521)
81 PRK15412 thiol:disulfide inter 99.4 1.1E-11 2.4E-16 98.2 12.1 84 83-176 66-174 (185)
82 TIGR00385 dsbE periplasmic pro 99.4 1.1E-11 2.4E-16 97.1 11.4 85 83-177 61-170 (173)
83 TIGR02740 TraF-like TraF-like 99.3 1.5E-11 3.2E-16 103.0 12.1 83 85-176 166-262 (271)
84 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 1.8E-11 3.9E-16 85.7 9.7 65 86-152 13-78 (89)
85 KOG4277 Uncharacterized conser 99.3 3.1E-12 6.7E-17 106.0 6.4 86 83-177 41-131 (468)
86 PRK03147 thiol-disulfide oxido 99.3 2.4E-11 5.1E-16 94.6 11.1 96 74-177 50-171 (173)
87 cd02966 TlpA_like_family TlpA- 99.3 1.3E-11 2.9E-16 88.1 8.8 72 84-155 18-116 (116)
88 cd03009 TryX_like_TryX_NRX Try 99.3 1.3E-11 2.8E-16 92.0 8.7 70 84-153 17-116 (131)
89 cd03008 TryX_like_RdCVF Trypar 99.3 2.1E-11 4.5E-16 92.9 9.8 69 84-152 24-128 (146)
90 KOG0912 Thiol-disulfide isomer 99.3 9.4E-12 2E-16 103.2 8.3 95 74-176 2-104 (375)
91 PF13905 Thioredoxin_8: Thiore 99.3 3.2E-11 6.8E-16 84.8 9.3 65 85-149 1-95 (95)
92 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 3.5E-11 7.6E-16 88.4 9.7 90 75-173 10-121 (123)
93 cd02964 TryX_like_family Trypa 99.3 2.2E-11 4.7E-16 91.1 8.5 71 84-154 16-117 (132)
94 PLN02919 haloacid dehalogenase 99.2 6.6E-11 1.4E-15 115.2 11.2 86 84-177 419-535 (1057)
95 KOG0191 Thioredoxin/protein di 99.2 7.3E-11 1.6E-15 103.4 9.2 102 67-176 29-132 (383)
96 PRK13728 conjugal transfer pro 99.2 2.5E-10 5.3E-15 89.7 11.1 80 89-177 73-170 (181)
97 cd03012 TlpA_like_DipZ_like Tl 99.2 1.7E-10 3.6E-15 85.6 9.4 73 84-156 22-125 (126)
98 PF08534 Redoxin: Redoxin; In 99.2 2.6E-10 5.6E-15 86.4 9.6 86 83-174 26-146 (146)
99 cd02967 mauD Methylamine utili 99.1 2.7E-10 5.8E-15 82.6 8.8 69 84-152 20-111 (114)
100 cd02958 UAS UAS family; UAS is 99.1 7.9E-10 1.7E-14 80.6 10.6 90 80-177 12-110 (114)
101 COG4232 Thiol:disulfide interc 99.1 6E-10 1.3E-14 100.1 9.2 100 70-177 457-567 (569)
102 KOG0191 Thioredoxin/protein di 99.0 1.5E-09 3.3E-14 95.2 8.5 104 68-180 145-254 (383)
103 KOG0914 Thioredoxin-like prote 99.0 8.4E-10 1.8E-14 87.7 6.1 110 64-173 121-243 (265)
104 cd02960 AGR Anterior Gradient 99.0 2.1E-09 4.5E-14 80.1 7.3 79 78-157 16-100 (130)
105 PF14595 Thioredoxin_9: Thiore 99.0 6.7E-09 1.4E-13 77.6 9.9 69 88-156 44-117 (129)
106 TIGR02661 MauD methylamine deh 99.0 7E-09 1.5E-13 82.4 10.3 84 83-176 72-177 (189)
107 TIGR02196 GlrX_YruB Glutaredox 98.9 8.9E-09 1.9E-13 68.2 8.6 68 89-175 2-74 (74)
108 TIGR01626 ytfJ_HI0045 conserve 98.9 7.9E-09 1.7E-13 81.6 8.9 88 77-174 51-176 (184)
109 smart00594 UAS UAS domain. 98.9 2.9E-08 6.2E-13 73.4 11.3 93 74-174 15-121 (122)
110 PLN02399 phospholipid hydroper 98.9 1.2E-08 2.5E-13 83.8 9.7 85 84-176 98-232 (236)
111 KOG1731 FAD-dependent sulfhydr 98.9 1.6E-09 3.4E-14 96.8 4.4 80 67-147 39-126 (606)
112 PTZ00056 glutathione peroxidas 98.9 1.2E-08 2.7E-13 81.7 8.9 40 84-123 38-80 (199)
113 COG0526 TrxA Thiol-disulfide i 98.9 5.8E-09 1.3E-13 73.7 6.1 71 85-155 32-107 (127)
114 cd02969 PRX_like1 Peroxiredoxi 98.8 9.7E-08 2.1E-12 74.4 12.3 70 84-153 24-126 (171)
115 cd00340 GSH_Peroxidase Glutath 98.8 1.6E-08 3.5E-13 77.4 7.4 80 84-172 21-150 (152)
116 PF13899 Thioredoxin_7: Thiore 98.8 1.3E-08 2.9E-13 69.8 6.0 69 76-145 8-81 (82)
117 PLN02412 probable glutathione 98.8 4.1E-08 8.9E-13 76.5 9.5 85 84-176 28-162 (167)
118 TIGR02200 GlrX_actino Glutared 98.7 5E-08 1.1E-12 65.5 7.3 57 89-151 2-64 (77)
119 cd01659 TRX_superfamily Thiore 98.7 6.4E-08 1.4E-12 60.8 7.3 59 89-147 1-63 (69)
120 cd03017 PRX_BCP Peroxiredoxin 98.7 8.3E-08 1.8E-12 71.9 8.9 74 84-157 22-130 (140)
121 TIGR02540 gpx7 putative glutat 98.7 1.1E-07 2.4E-12 72.8 9.2 85 84-176 21-151 (153)
122 PRK00522 tpx lipid hydroperoxi 98.7 3.3E-07 7.1E-12 71.4 11.3 74 84-157 43-151 (167)
123 cd03014 PRX_Atyp2cys Peroxired 98.7 1.9E-07 4.1E-12 70.4 9.5 74 84-157 25-130 (143)
124 PF13728 TraF: F plasmid trans 98.7 2.7E-07 5.8E-12 74.8 10.8 78 88-174 123-214 (215)
125 KOG0911 Glutaredoxin-related p 98.6 2.7E-08 5.8E-13 79.6 3.8 88 69-158 3-91 (227)
126 KOG3414 Component of the U4/U6 98.6 3.3E-07 7.2E-12 66.9 8.8 83 69-151 5-91 (142)
127 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 3.1E-07 6.7E-12 67.2 8.4 69 84-152 24-124 (124)
128 PRK11200 grxA glutaredoxin 1; 98.6 5.3E-07 1.2E-11 62.2 9.1 61 89-151 3-70 (85)
129 PF13192 Thioredoxin_3: Thiore 98.6 8.3E-07 1.8E-11 60.1 9.5 72 91-175 4-76 (76)
130 cd02970 PRX_like2 Peroxiredoxi 98.5 9.3E-07 2E-11 66.6 10.2 71 85-155 23-148 (149)
131 PF02966 DIM1: Mitosis protein 98.5 1.5E-06 3.3E-11 64.2 10.7 88 69-157 2-94 (133)
132 KOG2501 Thioredoxin, nucleored 98.5 2.5E-07 5.3E-12 70.6 6.8 77 76-152 24-131 (157)
133 PRK09437 bcp thioredoxin-depen 98.5 8.3E-07 1.8E-11 67.8 9.4 75 83-157 28-140 (154)
134 TIGR02180 GRX_euk Glutaredoxin 98.5 4.2E-07 9E-12 62.0 6.8 58 89-150 1-65 (84)
135 cd03015 PRX_Typ2cys Peroxiredo 98.5 1.3E-06 2.9E-11 68.2 10.5 93 84-180 28-159 (173)
136 COG2143 Thioredoxin-related pr 98.5 1.5E-06 3.3E-11 66.0 9.6 87 81-175 38-146 (182)
137 PF06110 DUF953: Eukaryotic pr 98.5 1.5E-06 3.2E-11 63.9 8.9 93 74-175 4-118 (119)
138 PF03190 Thioredox_DsbH: Prote 98.5 1.5E-06 3.3E-11 67.1 9.1 84 75-158 27-124 (163)
139 TIGR03137 AhpC peroxiredoxin. 98.4 3.6E-06 7.7E-11 66.8 10.6 93 84-180 30-158 (187)
140 PF07449 HyaE: Hydrogenase-1 e 98.4 2.1E-06 4.6E-11 61.8 8.1 89 68-157 10-102 (107)
141 TIGR02183 GRXA Glutaredoxin, G 98.4 3.4E-06 7.3E-11 58.4 8.7 75 89-179 2-83 (86)
142 cd02976 NrdH NrdH-redoxin (Nrd 98.4 3E-06 6.5E-11 55.7 8.1 67 89-174 2-73 (73)
143 TIGR02739 TraF type-F conjugat 98.4 4.5E-06 9.7E-11 69.2 10.7 79 88-175 153-245 (256)
144 cd03018 PRX_AhpE_like Peroxire 98.4 5.1E-06 1.1E-10 62.8 10.0 72 86-157 29-134 (149)
145 KOG3425 Uncharacterized conser 98.4 2.6E-06 5.7E-11 61.8 7.7 72 75-146 12-104 (128)
146 PHA03050 glutaredoxin; Provisi 98.4 1.1E-06 2.5E-11 63.5 6.0 95 77-181 4-106 (108)
147 PRK10382 alkyl hydroperoxide r 98.3 1.5E-05 3.1E-10 63.4 12.3 101 67-177 19-155 (187)
148 PTZ00256 glutathione peroxidas 98.3 3.2E-06 6.9E-11 66.8 8.1 40 84-123 39-82 (183)
149 PRK15000 peroxidase; Provision 98.3 1E-05 2.2E-10 64.9 10.7 89 84-176 33-160 (200)
150 KOG0913 Thiol-disulfide isomer 98.3 2.4E-07 5.2E-12 74.6 1.2 103 68-182 25-132 (248)
151 cd02971 PRX_family Peroxiredox 98.2 8.2E-06 1.8E-10 60.9 8.8 75 84-158 21-131 (140)
152 cd02968 SCO SCO (an acronym fo 98.2 4E-06 8.7E-11 62.8 7.0 41 84-124 21-68 (142)
153 PRK13703 conjugal pilus assemb 98.2 1.1E-05 2.4E-10 66.5 10.1 80 88-175 146-238 (248)
154 PF13848 Thioredoxin_6: Thiore 98.2 4.9E-05 1.1E-09 59.2 13.0 104 64-176 74-184 (184)
155 cd02991 UAS_ETEA UAS family, E 98.2 5.9E-05 1.3E-09 55.3 11.7 84 83-176 15-111 (116)
156 PRK10877 protein disulfide iso 98.1 1.7E-05 3.7E-10 65.1 9.3 79 87-177 109-230 (232)
157 TIGR03143 AhpF_homolog putativ 98.1 3.1E-05 6.8E-10 71.2 11.8 75 88-174 478-554 (555)
158 PF00462 Glutaredoxin: Glutare 98.1 1.8E-05 3.9E-10 50.7 7.2 55 89-150 1-60 (60)
159 TIGR02189 GlrX-like_plant Glut 98.1 3.8E-06 8.2E-11 59.8 4.2 82 86-180 8-97 (99)
160 PRK13190 putative peroxiredoxi 98.1 4.3E-05 9.2E-10 61.4 10.3 89 84-176 26-152 (202)
161 cd03419 GRX_GRXh_1_2_like Glut 98.0 2.1E-05 4.5E-10 53.3 6.8 57 89-150 2-64 (82)
162 PF01216 Calsequestrin: Calseq 98.0 0.00015 3.3E-09 61.9 12.4 102 65-176 32-142 (383)
163 cd03016 PRX_1cys Peroxiredoxin 98.0 7.2E-05 1.6E-09 60.0 10.2 86 88-177 29-153 (203)
164 PRK10329 glutaredoxin-like pro 98.0 0.00013 2.7E-09 50.0 9.4 72 89-179 3-78 (81)
165 PRK15317 alkyl hydroperoxide r 98.0 9E-05 2E-09 67.6 11.3 77 88-176 119-196 (517)
166 TIGR02190 GlrX-dom Glutaredoxi 98.0 7.4E-05 1.6E-09 50.7 8.2 56 88-150 9-68 (79)
167 PRK13599 putative peroxiredoxi 97.9 0.00015 3.2E-09 58.9 11.0 89 84-176 27-154 (215)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 6E-05 1.3E-09 60.1 8.5 75 85-174 77-197 (197)
169 cd03023 DsbA_Com1_like DsbA fa 97.9 0.00014 3.1E-09 54.7 10.1 36 86-121 6-42 (154)
170 TIGR02194 GlrX_NrdH Glutaredox 97.9 7.1E-05 1.5E-09 49.8 7.4 59 90-157 2-64 (72)
171 PRK13191 putative peroxiredoxi 97.9 0.00016 3.4E-09 58.7 10.7 89 84-176 32-159 (215)
172 PF11009 DUF2847: Protein of u 97.9 0.00029 6.4E-09 50.5 10.8 86 71-156 3-97 (105)
173 PTZ00137 2-Cys peroxiredoxin; 97.9 0.00022 4.7E-09 59.5 11.8 88 84-175 97-222 (261)
174 PRK13189 peroxiredoxin; Provis 97.9 0.00018 4E-09 58.6 10.4 89 84-176 34-161 (222)
175 cd02066 GRX_family Glutaredoxi 97.9 6.4E-05 1.4E-09 48.9 6.4 57 89-152 2-63 (72)
176 PTZ00253 tryparedoxin peroxida 97.8 0.00033 7.2E-09 56.0 10.6 93 84-180 35-166 (199)
177 PRK10824 glutaredoxin-4; Provi 97.8 2.8E-05 6E-10 56.9 3.7 93 76-180 5-106 (115)
178 TIGR03140 AhpF alkyl hydropero 97.7 0.00045 9.8E-09 63.0 11.8 76 88-175 120-196 (515)
179 cd03029 GRX_hybridPRX5 Glutare 97.7 0.00039 8.5E-09 46.1 8.5 55 89-150 3-61 (72)
180 PF13462 Thioredoxin_4: Thiore 97.7 0.00063 1.4E-08 51.8 10.7 38 86-123 13-54 (162)
181 KOG1752 Glutaredoxin and relat 97.7 0.00016 3.4E-09 51.9 6.6 91 79-180 7-103 (104)
182 cd02981 PDI_b_family Protein D 97.7 0.0006 1.3E-08 47.6 9.5 93 70-177 2-97 (97)
183 TIGR02181 GRX_bact Glutaredoxi 97.6 0.00017 3.8E-09 48.6 5.8 55 90-151 2-61 (79)
184 cd03418 GRX_GRXb_1_3_like Glut 97.6 0.00039 8.4E-09 46.2 7.3 56 89-151 2-63 (75)
185 PRK10606 btuE putative glutath 97.6 0.0003 6.5E-09 55.7 7.6 40 84-124 24-66 (183)
186 PRK11657 dsbG disulfide isomer 97.6 0.00072 1.6E-08 56.1 9.9 80 86-175 118-249 (251)
187 cd03027 GRX_DEP Glutaredoxin ( 97.6 0.00061 1.3E-08 45.3 7.7 56 89-151 3-63 (73)
188 TIGR00365 monothiol glutaredox 97.5 0.00099 2.2E-08 47.1 8.6 67 78-151 4-79 (97)
189 cd02983 P5_C P5 family, C-term 97.5 0.0026 5.6E-08 47.5 11.2 103 68-177 3-114 (130)
190 PF05768 DUF836: Glutaredoxin- 97.5 0.0013 2.8E-08 44.9 8.5 78 89-175 2-81 (81)
191 PF00837 T4_deiodinase: Iodoth 97.4 0.0025 5.5E-08 52.0 10.8 105 66-178 81-237 (237)
192 cd03019 DsbA_DsbA DsbA family, 97.3 0.0019 4.2E-08 49.9 9.1 36 84-119 14-51 (178)
193 COG1225 Bcp Peroxiredoxin [Pos 97.2 0.0057 1.2E-07 47.1 10.5 90 83-177 28-155 (157)
194 PRK10638 glutaredoxin 3; Provi 97.2 0.0017 3.6E-08 44.3 6.7 56 89-151 4-64 (83)
195 cd02972 DsbA_family DsbA famil 97.2 0.0015 3.3E-08 44.6 6.5 57 89-145 1-91 (98)
196 cd03073 PDI_b'_ERp72_ERp57 PDI 97.2 0.0056 1.2E-07 44.4 9.7 73 97-177 31-110 (111)
197 cd03072 PDI_b'_ERp44 PDIb' fam 97.2 0.0041 8.8E-08 45.1 8.9 100 70-177 2-107 (111)
198 KOG2603 Oligosaccharyltransfer 97.2 0.0062 1.4E-07 51.4 10.8 108 66-177 39-165 (331)
199 cd03028 GRX_PICOT_like Glutare 97.2 0.0024 5.3E-08 44.4 7.2 60 84-150 6-74 (90)
200 COG0695 GrxC Glutaredoxin and 97.1 0.002 4.4E-08 43.9 6.0 53 89-148 3-62 (80)
201 PRK12759 bifunctional gluaredo 96.9 0.002 4.4E-08 57.2 6.3 83 89-185 4-99 (410)
202 PF07912 ERp29_N: ERp29, N-ter 96.9 0.041 8.9E-07 40.4 12.0 101 69-180 6-121 (126)
203 PRK10954 periplasmic protein d 96.9 0.0047 1E-07 49.6 7.4 39 85-123 37-80 (207)
204 PTZ00062 glutaredoxin; Provisi 96.6 0.0069 1.5E-07 48.7 6.7 69 76-151 103-180 (204)
205 TIGR03143 AhpF_homolog putativ 96.5 0.033 7.2E-07 51.4 11.0 70 88-157 369-441 (555)
206 cd03066 PDI_b_Calsequestrin_mi 96.2 0.087 1.9E-06 37.3 9.6 95 69-177 2-100 (102)
207 PF01323 DSBA: DSBA-like thior 95.9 0.094 2E-06 40.9 9.5 29 89-117 2-31 (193)
208 cd03067 PDI_b_PDIR_N PDIb fami 95.9 0.11 2.3E-06 37.0 8.5 98 69-175 3-109 (112)
209 PF13848 Thioredoxin_6: Thiore 95.7 0.073 1.6E-06 41.1 8.1 67 101-178 7-75 (184)
210 COG0278 Glutaredoxin-related p 95.1 0.063 1.4E-06 38.0 5.2 70 80-153 9-85 (105)
211 COG1331 Highly conserved prote 94.9 0.24 5.2E-06 46.3 9.9 85 74-158 32-130 (667)
212 cd03069 PDI_b_ERp57 PDIb famil 94.9 0.36 7.8E-06 34.2 8.9 92 70-177 3-103 (104)
213 PF13743 Thioredoxin_5: Thiore 94.8 0.15 3.3E-06 39.9 7.4 25 91-115 2-27 (176)
214 cd03031 GRX_GRX_like Glutaredo 94.5 0.077 1.7E-06 40.4 4.8 52 95-153 15-74 (147)
215 cd03013 PRX5_like Peroxiredoxi 94.1 0.14 3E-06 39.2 5.6 42 84-125 28-75 (155)
216 PHA03075 glutaredoxin-like pro 93.7 0.13 2.8E-06 37.4 4.3 29 86-114 2-31 (123)
217 cd02977 ArsC_family Arsenate R 92.3 0.14 3E-06 36.4 2.9 82 90-180 2-89 (105)
218 cd03060 GST_N_Omega_like GST_N 92.2 0.61 1.3E-05 30.3 5.7 55 91-149 3-59 (71)
219 cd03036 ArsC_like Arsenate Red 92.1 0.15 3.2E-06 36.8 2.8 82 91-180 3-90 (111)
220 cd02978 KaiB_like KaiB-like fa 92.0 0.58 1.3E-05 31.2 5.3 55 89-143 3-61 (72)
221 cd03041 GST_N_2GST_N GST_N fam 91.7 2.5 5.5E-05 27.8 8.5 48 91-143 4-56 (77)
222 TIGR02742 TrbC_Ftype type-F co 91.2 2.5 5.5E-05 31.5 8.6 67 76-148 15-82 (130)
223 COG1999 Uncharacterized protei 90.2 0.92 2E-05 36.5 6.0 89 74-181 56-155 (207)
224 cd03037 GST_N_GRX2 GST_N famil 90.1 1.2 2.7E-05 28.7 5.6 53 92-148 4-57 (71)
225 cd03068 PDI_b_ERp72 PDIb famil 89.5 6 0.00013 28.2 10.5 70 69-145 2-74 (107)
226 TIGR02654 circ_KaiB circadian 88.8 1.4 3.1E-05 30.4 5.2 69 88-157 4-76 (87)
227 cd00570 GST_N_family Glutathio 88.5 0.99 2.1E-05 28.0 4.2 54 91-149 3-59 (71)
228 KOG2507 Ubiquitin regulatory p 88.5 5.7 0.00012 35.4 9.8 73 85-157 18-98 (506)
229 cd03059 GST_N_SspA GST_N famil 88.3 4 8.7E-05 26.1 7.1 52 91-147 3-56 (73)
230 PF06491 Disulph_isomer: Disul 87.9 9.4 0.0002 28.4 9.9 102 68-175 17-129 (136)
231 PF06053 DUF929: Domain of unk 87.5 1.9 4.1E-05 35.8 6.1 68 68-145 45-113 (249)
232 PF09673 TrbC_Ftype: Type-F co 87.4 3.3 7.2E-05 29.9 6.8 65 77-146 15-80 (113)
233 PRK09301 circadian clock prote 87.4 1.9 4.1E-05 30.8 5.2 82 88-180 7-92 (103)
234 cd03051 GST_N_GTT2_like GST_N 86.5 1.6 3.6E-05 27.9 4.4 54 91-148 3-61 (74)
235 cd02974 AhpF_NTD_N Alkyl hydro 85.9 9.6 0.00021 26.6 9.1 59 88-157 22-81 (94)
236 PF13417 GST_N_3: Glutathione 85.3 8 0.00017 25.2 8.7 55 92-151 2-58 (75)
237 TIGR01617 arsC_related transcr 85.2 1.6 3.5E-05 31.5 4.2 82 91-180 3-90 (117)
238 PRK12559 transcriptional regul 84.7 0.81 1.8E-05 34.1 2.4 81 90-180 3-89 (131)
239 cd03045 GST_N_Delta_Epsilon GS 84.2 4.8 0.0001 25.9 5.8 53 91-148 3-60 (74)
240 cd03040 GST_N_mPGES2 GST_N fam 83.0 1.8 3.8E-05 28.4 3.3 50 91-144 4-54 (77)
241 PRK15317 alkyl hydroperoxide r 82.8 15 0.00033 33.5 10.4 60 87-157 20-81 (517)
242 PRK01655 spxA transcriptional 82.6 2.2 4.7E-05 31.7 4.0 80 91-180 4-89 (131)
243 cd03035 ArsC_Yffb Arsenate Red 82.1 1.9 4.1E-05 30.7 3.4 78 90-180 2-87 (105)
244 PF02630 SCO1-SenC: SCO1/SenC; 79.7 4.4 9.5E-05 31.5 5.0 87 75-180 42-137 (174)
245 COG2761 FrnE Predicted dithiol 79.7 3.2 6.9E-05 33.9 4.3 38 129-178 176-213 (225)
246 COG4545 Glutaredoxin-related p 79.1 6.5 0.00014 26.4 4.8 56 90-151 5-77 (85)
247 PF07689 KaiB: KaiB domain; I 77.9 0.91 2E-05 31.0 0.5 47 96-142 8-56 (82)
248 TIGR03140 AhpF alkyl hydropero 77.5 30 0.00066 31.6 10.5 61 87-157 20-82 (515)
249 cd03055 GST_N_Omega GST_N fami 77.4 7.5 0.00016 26.4 5.1 52 89-143 19-72 (89)
250 COG3634 AhpF Alkyl hydroperoxi 77.3 3.6 7.8E-05 36.1 4.1 60 89-150 120-180 (520)
251 cd03056 GST_N_4 GST_N family, 77.1 12 0.00026 23.7 5.9 55 91-150 3-62 (73)
252 cd03032 ArsC_Spx Arsenate Redu 76.6 5 0.00011 28.9 4.2 80 91-180 4-89 (115)
253 cd03022 DsbA_HCCA_Iso DsbA fam 75.7 4.7 0.0001 31.1 4.2 34 128-174 158-191 (192)
254 cd03052 GST_N_GDAP1 GST_N fami 75.5 15 0.00032 24.0 5.9 54 91-149 3-61 (73)
255 KOG2640 Thioredoxin [Function 73.7 0.69 1.5E-05 39.3 -1.1 84 85-177 76-161 (319)
256 cd03024 DsbA_FrnE DsbA family, 73.5 6.7 0.00015 30.6 4.6 36 127-174 165-200 (201)
257 COG1651 DsbG Protein-disulfide 72.9 6.3 0.00014 32.0 4.4 35 86-120 85-120 (244)
258 PF10281 Ish1: Putative stress 71.7 5.8 0.00013 22.7 2.9 21 164-184 3-23 (38)
259 PF06953 ArsD: Arsenical resis 70.9 31 0.00068 25.4 7.2 63 102-177 29-101 (123)
260 PRK13730 conjugal transfer pil 70.2 9.8 0.00021 30.6 4.7 34 123-157 148-181 (212)
261 PF04134 DUF393: Protein of un 69.4 6.4 0.00014 27.9 3.3 56 92-148 2-61 (114)
262 COG3531 Predicted protein-disu 69.4 8.2 0.00018 30.9 4.1 44 128-177 165-208 (212)
263 COG3019 Predicted metal-bindin 68.9 14 0.0003 27.9 5.0 72 88-177 27-103 (149)
264 PF08806 Sep15_SelM: Sep15/Sel 68.8 6.6 0.00014 26.5 3.0 37 136-179 40-77 (78)
265 PRK13344 spxA transcriptional 67.4 10 0.00022 28.1 4.2 32 90-126 3-35 (132)
266 PF06764 DUF1223: Protein of u 67.1 58 0.0012 26.1 8.6 80 89-180 1-100 (202)
267 cd03025 DsbA_FrnE_like DsbA fa 67.0 6.5 0.00014 30.4 3.2 26 89-114 3-29 (193)
268 cd03030 GRX_SH3BGR Glutaredoxi 64.2 10 0.00022 26.3 3.4 60 91-153 3-74 (92)
269 PF04592 SelP_N: Selenoprotein 61.1 18 0.00039 29.7 4.7 41 85-125 26-72 (238)
270 COG2118 DNA-binding protein [G 60.7 11 0.00023 27.4 3.0 20 36-55 2-21 (116)
271 KOG0911 Glutaredoxin-related p 60.5 35 0.00075 27.9 6.2 66 81-151 134-206 (227)
272 KOG2792 Putative cytochrome C 59.4 38 0.00083 28.3 6.3 51 75-125 129-188 (280)
273 PF04908 SH3BGR: SH3-binding, 57.6 7 0.00015 27.7 1.6 81 89-174 2-96 (99)
274 cd03053 GST_N_Phi GST_N family 57.3 48 0.001 21.1 7.6 54 91-149 4-62 (76)
275 cd03025 DsbA_FrnE_like DsbA fa 51.6 23 0.00051 27.2 3.9 21 128-148 160-180 (193)
276 cd03049 GST_N_3 GST_N family, 50.2 55 0.0012 20.7 5.0 56 91-148 3-60 (73)
277 cd00862 ProRS_anticodon_zinc P 50.2 74 0.0016 25.3 6.6 49 46-100 108-158 (202)
278 COG5494 Predicted thioredoxin/ 48.1 1.1E+02 0.0024 24.9 7.1 70 92-176 16-86 (265)
279 cd03033 ArsC_15kD Arsenate Red 46.8 23 0.0005 25.5 2.9 76 91-180 4-87 (113)
280 KOG3431 Apoptosis-related prot 46.5 19 0.00041 26.5 2.3 20 37-56 2-21 (129)
281 PRK00366 ispG 4-hydroxy-3-meth 44.7 80 0.0017 27.7 6.3 63 94-156 272-343 (360)
282 TIGR00014 arsC arsenate reduct 44.2 31 0.00067 24.7 3.3 77 91-180 3-89 (114)
283 COG5429 Uncharacterized secret 44.1 62 0.0014 26.7 5.2 79 88-178 43-141 (261)
284 cd03058 GST_N_Tau GST_N family 44.0 76 0.0016 20.1 4.9 52 92-148 4-58 (74)
285 PRK10026 arsenate reductase; P 43.4 22 0.00047 26.9 2.4 80 91-180 6-91 (141)
286 KOG4752 Ribosomal protein L41 42.4 47 0.001 16.9 2.7 17 41-57 3-19 (26)
287 PF11673 DUF3269: Protein of u 42.1 40 0.00086 22.4 3.1 53 133-186 9-64 (73)
288 KOG0733 Nuclear AAA ATPase (VC 41.4 1E+02 0.0023 29.4 6.8 103 70-181 529-643 (802)
289 cd03034 ArsC_ArsC Arsenate Red 41.2 37 0.0008 24.2 3.3 77 91-180 3-88 (112)
290 PF11287 DUF3088: Protein of u 40.2 57 0.0012 23.6 4.0 50 96-145 24-76 (112)
291 PF10587 EF-1_beta_acid: Eukar 39.8 38 0.00082 18.2 2.3 18 36-53 9-26 (28)
292 COG1651 DsbG Protein-disulfide 38.3 45 0.00099 26.9 3.8 36 128-176 206-241 (244)
293 COG1579 Zn-ribbon protein, pos 38.1 1.6E+02 0.0034 24.4 6.8 36 76-111 178-217 (239)
294 cd03044 GST_N_EF1Bgamma GST_N 35.8 96 0.0021 19.8 4.4 54 91-148 3-60 (75)
295 COG1222 RPT1 ATP-dependent 26S 35.8 2.5E+02 0.0054 25.0 7.9 105 71-186 170-291 (406)
296 PF04551 GcpE: GcpE protein; 35.1 71 0.0015 28.0 4.5 79 92-177 269-358 (359)
297 cd03061 GST_N_CLIC GST_N famil 35.0 1.5E+02 0.0033 20.4 8.1 64 94-176 20-84 (91)
298 COG0450 AhpC Peroxiredoxin [Po 33.8 2.5E+02 0.0053 22.5 8.9 93 86-182 34-171 (194)
299 PRK09481 sspA stringent starva 32.7 1.6E+02 0.0035 23.0 6.1 58 88-150 10-69 (211)
300 TIGR03439 methyl_EasF probable 32.5 2.8E+02 0.0061 23.8 7.8 54 88-143 79-134 (319)
301 cd03039 GST_N_Sigma_like GST_N 31.7 81 0.0017 19.9 3.5 52 93-149 6-59 (72)
302 PF05679 CHGN: Chondroitin N-a 31.7 3E+02 0.0066 25.2 8.3 57 88-144 284-347 (499)
303 PRK04239 hypothetical protein; 30.9 44 0.00094 24.2 2.2 18 39-56 2-19 (110)
304 TIGR00612 ispG_gcpE 1-hydroxy- 30.8 1.1E+02 0.0023 26.8 4.8 65 91-155 259-334 (346)
305 PF09695 YtfJ_HI0045: Bacteria 30.7 2.5E+02 0.0055 21.7 9.2 40 128-175 114-155 (160)
306 cd03050 GST_N_Theta GST_N fami 30.6 1.5E+02 0.0032 18.8 6.0 54 91-149 3-61 (76)
307 COG3011 Predicted thiol-disulf 30.2 2.3E+02 0.005 21.3 6.0 63 88-151 9-74 (137)
308 PF09822 ABC_transp_aux: ABC-t 30.1 3.1E+02 0.0067 22.5 12.6 71 68-139 8-90 (271)
309 PRK10387 glutaredoxin 2; Provi 30.0 2.1E+02 0.0045 22.1 6.3 52 94-149 7-58 (210)
310 cd02990 UAS_FAF1 UAS family, F 29.5 2.4E+02 0.0052 21.1 11.9 83 84-176 20-131 (136)
311 COG2047 Uncharacterized protei 28.8 61 0.0013 26.6 2.9 51 128-186 110-162 (258)
312 PRK11752 putative S-transferas 28.8 2.1E+02 0.0046 23.5 6.4 55 89-143 44-106 (264)
313 KOG4529 Uncharacterized conser 28.7 80 0.0017 27.5 3.7 44 167-210 166-213 (404)
314 COG0821 gcpE 1-hydroxy-2-methy 28.4 2.1E+02 0.0045 25.0 6.2 77 94-178 265-351 (361)
315 cd03022 DsbA_HCCA_Iso DsbA fam 28.4 89 0.0019 23.8 3.8 23 92-114 4-27 (192)
316 TIGR02182 GRXB Glutaredoxin, G 28.2 2.6E+02 0.0057 21.9 6.6 51 94-150 6-58 (209)
317 COG2077 Tpx Peroxiredoxin [Pos 27.9 2.3E+02 0.005 21.8 5.7 61 85-145 44-109 (158)
318 cd05855 Ig_TrkB_d5 Fifth domai 27.2 45 0.00098 22.2 1.7 15 137-151 11-25 (79)
319 cd00307 RuBisCO_small_like Rib 26.9 70 0.0015 21.9 2.6 30 96-125 36-72 (84)
320 COG1393 ArsC Arsenate reductas 26.7 76 0.0016 23.0 2.9 20 90-109 4-24 (117)
321 cd03024 DsbA_FrnE DsbA family, 26.6 83 0.0018 24.3 3.4 23 92-114 4-27 (201)
322 PF03960 ArsC: ArsC family; I 26.6 1.2E+02 0.0027 21.2 4.0 78 92-180 1-86 (110)
323 COG3581 Uncharacterized protei 26.2 1.6E+02 0.0034 26.3 5.2 51 74-124 55-113 (420)
324 PRK10853 putative reductase; P 25.7 83 0.0018 22.8 3.0 77 91-180 4-89 (118)
325 COG1422 Predicted membrane pro 25.7 2.9E+02 0.0064 22.2 6.2 43 15-57 74-117 (201)
326 cd03074 PDI_b'_Calsequestrin_C 25.3 2.7E+02 0.0059 20.2 11.3 98 74-176 7-118 (120)
327 cd05863 Ig2_VEGFR-3 Second imm 25.2 62 0.0013 20.7 2.0 15 137-151 11-25 (67)
328 PRK08661 prolyl-tRNA synthetas 25.0 2.6E+02 0.0057 25.4 6.7 54 40-98 379-433 (477)
329 KOG4277 Uncharacterized conser 24.7 4.7E+02 0.01 22.7 8.4 95 67-177 133-230 (468)
330 KOG4163 Prolyl-tRNA synthetase 24.2 2.4E+02 0.0052 25.7 5.9 60 37-101 437-496 (551)
331 KOG0912 Thiol-disulfide isomer 24.0 4.8E+02 0.01 22.7 7.8 116 41-179 87-209 (375)
332 cd03076 GST_N_Pi GST_N family, 24.0 2E+02 0.0043 18.2 4.6 53 92-149 5-59 (73)
333 COG3411 Ferredoxin [Energy pro 23.8 1.5E+02 0.0032 19.2 3.5 29 137-177 16-44 (64)
334 PF13778 DUF4174: Domain of un 23.1 2.9E+02 0.0063 19.8 9.1 83 86-176 10-110 (118)
335 KOG2299 Ribonuclease HI [Repli 22.0 1.9E+02 0.0041 24.3 4.6 40 78-120 128-168 (301)
336 KOG0855 Alkyl hydroperoxide re 21.6 54 0.0012 25.7 1.3 24 83-106 88-113 (211)
337 PF09778 Guanylate_cyc_2: Guan 21.5 1.9E+02 0.0042 23.4 4.5 76 45-126 89-174 (212)
338 cd03038 GST_N_etherase_LigE GS 21.2 2.4E+02 0.0053 18.2 5.2 46 94-142 14-62 (84)
339 TIGR01616 nitro_assoc nitrogen 20.9 1.2E+02 0.0027 22.2 3.1 19 91-109 5-24 (126)
340 cd03527 RuBisCO_small Ribulose 20.7 1.4E+02 0.0031 21.1 3.2 60 66-126 6-88 (99)
341 PF05582 Peptidase_U57: YabG p 20.3 5.4E+02 0.012 21.9 7.2 54 65-119 104-160 (287)
No 1
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=4.2e-37 Score=237.53 Aligned_cols=204 Identities=59% Similarity=0.947 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcC
Q 028334 6 VQEILEKQLLTVAKAVEEKLDEEIAAIDRLDDDDLEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKAS 85 (210)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ldd~~le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~ 85 (210)
.+..++.++++.+...+++.++++..++.++++.++..|++|+++|++.+++++.|...|+|.+.+|.+..+|.+.++++
T Consensus 5 ~~~~~~~qvl~~~ka~~~~~d~e~~~le~~d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~kS 84 (211)
T KOG1672|consen 5 AAKILEKQVLTAAKAVEEQLDEELDKLENMDEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVKKS 84 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhhcC
Confidence 56678888999998898889999999999999999999999999999999999999999999999998899999999999
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCC
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDE 164 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~ 164 (210)
..||+||| |....|+.|..+|+.||++|.+++|++||+..+|.++.+++|+.+||+++|++|+.+.+++||..+||.++
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDd 164 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDD 164 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHCCCcccCCCCCcccc--cccccccccCCCCCCCCCC
Q 028334 165 FSTEELEERLAKAQVIFLEGESSVKSG--AETRRSVRQSTNPDSSDSE 210 (210)
Q Consensus 165 ~~~~~L~~~L~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 210 (210)
|+.+.|+..|.+.|+|.+.+..+..+. ...++++|++ ..+|||+|
T Consensus 165 F~te~LE~rL~~S~vi~~~~~~s~~~~~~~~~~~~ir~~-~~~DSD~d 211 (211)
T KOG1672|consen 165 FTTETLENRLAKSGVIDYTGELSKPKKVNTSIRRSVRSS-AESDSDSD 211 (211)
T ss_pred CcHHHHHHHHhhccceecccccccCccchhhHHHHhhcC-ccccccCC
Confidence 999999999999999999888744333 5778889975 77777775
No 2
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=2.5e-33 Score=222.91 Aligned_cols=153 Identities=31% Similarity=0.454 Sum_probs=135.1
Q ss_pred HHHHHHHHhhhHHHHHHhccC-Ch-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcCC---cEE
Q 028334 15 LTVAKAVEEKLDEEIAAIDRL-DD-DDLEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASD---RVV 89 (210)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ld~l-dd-~~le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~~---~vv 89 (210)
-...+.+++.+++++..+++. +| +||++||++||++|++...+ .+||.+++| +..+|...|..++ .||
T Consensus 34 ~~~~~~~e~~~~~el~~~~d~~~d~~~Le~yR~kRl~el~~~~~~------~~~G~v~ei-s~~~f~~eV~~as~~~~VV 106 (192)
T cd02988 34 EAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEK------SKFGEVYEI-SKPDYVREVTEASKDTWVV 106 (192)
T ss_pred HHHHhHhhhccHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhh------CCCCeEEEe-CHHHHHHHHHhcCCCCEEE
Confidence 334566777788888877665 33 49999999999999997654 459999999 8999999887653 499
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHH
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTE 168 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~ 168 (210)
|||| +||++|+.+.|+|.+||.+|+.++|++|+++.+ ...|+|.++||+++|++|+++++++|+.++||. .|+.+
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~-~~~~~ 182 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGM-NTTME 182 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCC-CCCHH
Confidence 9999 999999999999999999999999999999875 689999999999999999999999999999987 99999
Q ss_pred HHHHHHHHCC
Q 028334 169 ELEERLAKAQ 178 (210)
Q Consensus 169 ~L~~~L~~~~ 178 (210)
.|+.+|.++|
T Consensus 183 ~lE~~L~~~g 192 (192)
T cd02988 183 DLEWLLVQVG 192 (192)
T ss_pred HHHHHHHhcC
Confidence 9999999876
No 3
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=2e-33 Score=220.65 Aligned_cols=146 Identities=24% Similarity=0.331 Sum_probs=129.5
Q ss_pred HHHHHHhccCCh---HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcCC---cEEEEec-CCChh
Q 028334 26 DEEIAAIDRLDD---DDLEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASD---RVVCHFY-RENWP 98 (210)
Q Consensus 26 ~~~~~~ld~ldd---~~le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~~---~vvV~fy-~wC~~ 98 (210)
++++..+|+++| ++|++||++||++|++...++ ..+|.+.+|++.++|...|.+++ .|||+|| +||++
T Consensus 23 ~~~~~~~d~~~~~~e~~l~~~R~~R~~el~~~~~~~-----~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~ 97 (175)
T cd02987 23 KESEQEDDDDDEDKEEFLQQYREQRMQEMHAKLPFG-----RRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPG 97 (175)
T ss_pred hchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccc-----CCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCch
Confidence 444555666644 599999999999999986443 34999999955599999998765 6999999 99999
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHCC
Q 028334 99 CKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQ 178 (210)
Q Consensus 99 C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~ 178 (210)
|+.+.|+|..|+.+|+.++|++||++.+ .++..|+|.++||+++|++|+++.+++|+..+|+. .|+.+.|+.+|.++|
T Consensus 98 Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~-~f~~~~le~~L~~~g 175 (175)
T cd02987 98 CAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE-DFDAEDLESFLVEYG 175 (175)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC-CCCHHHHHHHHHhcC
Confidence 9999999999999999999999999988 89999999999999999999999999999998876 999999999999986
No 4
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.97 E-value=5.5e-30 Score=212.38 Aligned_cols=170 Identities=35% Similarity=0.527 Sum_probs=119.7
Q ss_pred HHHHHhcc-C-ChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcCCc---EEEEec-CCChhhH
Q 028334 27 EEIAAIDR-L-DDDDLEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDR---VVCHFY-RENWPCK 100 (210)
Q Consensus 27 ~~~~~ld~-l-dd~~le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~~~---vvV~fy-~wC~~C~ 100 (210)
+++..++. . |++||++||++||++|++++... +.||.+++|.+++.|..+|.+... |||||| +.++.|.
T Consensus 88 ~e~e~~~~d~eDeefL~~yR~qRm~El~~~~~~~-----~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~ 162 (265)
T PF02114_consen 88 DELEELEDDEEDEEFLEQYREQRMQELKQKLQKG-----PRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCE 162 (265)
T ss_dssp HHHHHHCC----HHHHHHHHHHHHHHHHHHH------------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHH
T ss_pred hHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhC-----CcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHH
Confidence 45555553 3 77899999999999999876542 349999999778999999977654 999999 9999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 101 VMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 101 ~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
.|..+|..||.+||.++|++|.+...+ +...|.+.++||+++|++|.++++++|+..+|| ..|....|+.+|.++|+|
T Consensus 163 ~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g-~df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 163 IMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG-DDFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp HHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT--TT--HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcC-CCCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999887 788999999999999999999999999999887 579999999999999999
Q ss_pred ccCCCCCcccccccccccccCCCCCCCCCC
Q 028334 181 FLEGESSVKSGAETRRSVRQSTNPDSSDSE 210 (210)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 210 (210)
++... ....+++++.+-+++|+|
T Consensus 241 -~~k~~------~~~~~~~~~~~~~s~d~d 263 (265)
T PF02114_consen 241 -PEKDS------RLLTSSNNSANADSDDSD 263 (265)
T ss_dssp -S----------------------------
T ss_pred -CCccc------chhhhcccccccCccccc
Confidence 66654 333345545555555554
No 5
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.9e-27 Score=183.59 Aligned_cols=193 Identities=27% Similarity=0.400 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccC---Ch-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHH
Q 028334 7 QEILEKQLLTVAKAVEEKLDEEIAAIDRL---DD-DDLEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVV 82 (210)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~l---dd-~~le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v 82 (210)
.++.+...+...+.+|+.+.++|.+|++. +| .||++||.+|++++++.+.+.+ ||.|.+| ++.+|...|
T Consensus 33 ea~~~~~~~~~~~~~edk~leeLeelEDded~dDerfLE~YR~kRl~E~r~~~~k~k------fG~V~~I-Sg~dyv~EV 105 (240)
T KOG3170|consen 33 EALEEAIAKSHENRLEDKDLEELEELEDDEDSDDERFLEMYRIKRLAEWRATAEKAK------FGEVFPI-SGPDYVKEV 105 (240)
T ss_pred HHHHHHHHHHHHhhhhcccHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHhc------ccceeec-cchHHHHHH
Confidence 34555557888888898888888888775 44 4999999999999999998744 9999999 999999999
Q ss_pred hcCCc---EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccC
Q 028334 83 KASDR---VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDE 158 (210)
Q Consensus 83 ~~~~~---vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~ 158 (210)
+..+. ||||.| ..-+.|+.+..+|+.+|.+||.++|+++-.+.+ ...|.-..+||+++|..|.+..+++|...
T Consensus 106 T~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl~VY~~G~lk~q~igll~ 182 (240)
T KOG3170|consen 106 TKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTLLVYHHGALKKQMIGLLE 182 (240)
T ss_pred HhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeEEEeecchHHhheehhhh
Confidence 87776 999999 999999999999999999999999999999988 67888899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHCCCcccCCC-CC-cccccc--ccccc-ccCCCCCCCCCC
Q 028334 159 LGGTDEFSTEELEERLAKAQVIFLEGE-SS-VKSGAE--TRRSV-RQSTNPDSSDSE 210 (210)
Q Consensus 159 ~g~~~~~~~~~L~~~L~~~~~l~~~~~-~~-~~~~~~--~~~~~-~~~~~~~~~d~~ 210 (210)
|||+ ..+.+.++.+|.+.|++-.++. .+ ..|... -+.+. |.++..+|+|++
T Consensus 183 lgG~-n~t~ed~e~~L~qaga~l~d~~~~D~~~~~Ed~~l~~g~rrd~~~~dd~D~~ 238 (240)
T KOG3170|consen 183 LGGM-NLTMEDVEDFLVQAGAALTDGDNEDDEESREDRKLHYGERRDSSDNDDDDGF 238 (240)
T ss_pred hcCC-cCCHHHHHHHHHhccccccccccCCccccHHHHHHHhccccccccccccccc
Confidence 9986 6789999999999994434454 22 244444 23344 466666776653
No 6
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.95 E-value=2.1e-26 Score=168.74 Aligned_cols=111 Identities=64% Similarity=1.119 Sum_probs=107.0
Q ss_pred CCCceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 65 GHGDYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 65 ~~~~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
++|.+.+|++.++|.+.+.++..|+|+|| |||++|+.+.|.|++++++|++++|++||+++.+.++++|+|.++||+++
T Consensus 2 ~~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 2 GHGKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 68999999777999999998889999999 99999999999999999999999999999999999999999999999999
Q ss_pred EECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 144 IKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 144 ~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
|++|+.+.+++|..++||++.++.+.|++||.
T Consensus 82 fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~~ 113 (113)
T cd02989 82 FKNGKTVDRIVGFEELGGKDDFSTETLEKRLA 113 (113)
T ss_pred EECCEEEEEEECccccCCCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999983
No 7
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.92 E-value=2e-24 Score=158.01 Aligned_cols=108 Identities=52% Similarity=0.818 Sum_probs=101.2
Q ss_pred CCCceeecCChhhHHHHHhcC---CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcE
Q 028334 65 GHGDYSEIQAEKDFFSVVKAS---DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPT 140 (210)
Q Consensus 65 ~~~~v~~i~t~~~f~~~v~~~---~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPt 140 (210)
.+|.+.+| +.++|.+.+.+. .+++|+|| |||++|+.+.|.|++++.+|++++|++||++++ .++.+|+|.++||
T Consensus 2 ~~g~v~~i-~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 2 GFGEVREI-SSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CCceEEEE-cHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 47889999 669999999876 56999999 999999999999999999999999999999998 9999999999999
Q ss_pred EEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 141 LALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 141 ll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
+++|++|+.+.++.|..++++ ..|+.+.|+++|.
T Consensus 80 ~~~f~~G~~v~~~~G~~~~~~-~~~~~~~l~~~l~ 113 (113)
T cd02957 80 LLVYKNGELIDNIVGFEELGG-DDFTTEDLEKFLA 113 (113)
T ss_pred EEEEECCEEEEEEecHHHhCC-CCCCHHHHHHHhC
Confidence 999999999999999999988 8999999999873
No 8
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=158.28 Aligned_cols=101 Identities=27% Similarity=0.375 Sum_probs=93.4
Q ss_pred eeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 69 YSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
...+.+..+|.+.|.++.. |+|.|| +||+||+.+.|.|++++.+|.+ ++|+++|++++++++.+|+|.++||+++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 4444489999999887765 999999 9999999999999999999988 999999999999999999999999999999
Q ss_pred CCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 146 NAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 146 ~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
||+.+.+++|.. +.+.|..+|+++
T Consensus 124 nGe~~d~~vG~~--------~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 124 NGEKVDRFVGAV--------PKEQLRSLIKKF 147 (150)
T ss_pred CCEEeeeecccC--------CHHHHHHHHHHH
Confidence 999999999998 789999999874
No 9
>PHA02278 thioredoxin-like protein
Probab=99.89 E-value=4e-22 Score=143.49 Aligned_cols=93 Identities=10% Similarity=0.154 Sum_probs=82.8
Q ss_pred CChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCC----hhHHHhCCCCCCcEEEEEEC
Q 028334 73 QAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKS----PFLAERLKIVVLPTLALIKN 146 (210)
Q Consensus 73 ~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~----~~l~~~~~i~~vPtll~~~~ 146 (210)
.+.++|...+.+++++||+|| +||+||+.+.|.|++++.++.. +.|+++|++.+ +.++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 367889999988888999999 9999999999999999988544 78999999986 68999999999999999999
Q ss_pred CEEEEEEecccCCCCCCCCCHHHHHHH
Q 028334 147 AKVDDYVVGFDELGGTDEFSTEELEER 173 (210)
Q Consensus 147 G~~v~~~~G~~~~g~~~~~~~~~L~~~ 173 (210)
|+.++++.|.. +.+.|.++
T Consensus 82 G~~v~~~~G~~--------~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQV--------TPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCC--------CHHHHHhh
Confidence 99999999976 56776654
No 10
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.89 E-value=5.8e-22 Score=142.70 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=87.0
Q ss_pred CChhhHHHHHhc--CCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh---hHHHhCCCCCCcEEEEEEC
Q 028334 73 QAEKDFFSVVKA--SDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP---FLAERLKIVVLPTLALIKN 146 (210)
Q Consensus 73 ~t~~~f~~~v~~--~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~---~l~~~~~i~~vPtll~~~~ 146 (210)
+|.++|...+.+ ++.|||+|| +||++|+.+.|.|+++++.|+++.|++||+++++ .++++|+|.++||++||++
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 367889999875 456999999 9999999999999999999977999999999874 7899999999999999999
Q ss_pred CEEEEEEecccCCCCCCCCCHHHHHHHHHHCC
Q 028334 147 AKVDDYVVGFDELGGTDEFSTEELEERLAKAQ 178 (210)
Q Consensus 147 G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~ 178 (210)
|+++.++.|.. +..|...+..+|
T Consensus 81 G~~v~~~~G~~---------~~~l~~~~~~~~ 103 (103)
T cd02985 81 GEKIHEEEGIG---------PDELIGDVLYYG 103 (103)
T ss_pred CeEEEEEeCCC---------HHHHHHHHHhcC
Confidence 99999999976 678888877765
No 11
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.88 E-value=5e-22 Score=144.69 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=77.4
Q ss_pred hhhHHHHHhc--CCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEE
Q 028334 75 EKDFFSVVKA--SDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 75 ~~~f~~~v~~--~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
.++|...+.. +++|||+|| +||+||+.|.|.|++++.+|++ +.|++||+++++.++..|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 5678888873 456999999 9999999999999999999998 79999999999999999999999999999999999
Q ss_pred EEEecccC
Q 028334 151 DYVVGFDE 158 (210)
Q Consensus 151 ~~~~G~~~ 158 (210)
.+.+|..+
T Consensus 82 ~~~~G~~~ 89 (114)
T cd02954 82 KIDLGTGN 89 (114)
T ss_pred EEEcCCCC
Confidence 99999764
No 12
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.2e-22 Score=142.30 Aligned_cols=92 Identities=29% Similarity=0.448 Sum_probs=81.8
Q ss_pred hHHHHHhcC-CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEe
Q 028334 77 DFFSVVKAS-DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVV 154 (210)
Q Consensus 77 ~f~~~v~~~-~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~ 154 (210)
.+......+ ..+||+|| +|||||+.+.|.+.+|+.+|+++.|+++|+++++.+++.|+|.++||++||++|+.+.+++
T Consensus 12 ~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~v 91 (106)
T KOG0907|consen 12 LVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVV 91 (106)
T ss_pred HHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEe
Confidence 334444444 45999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCHHHHHHHHHHC
Q 028334 155 GFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 155 G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
|.. ...|+..+..+
T Consensus 92 Ga~---------~~~l~~~i~~~ 105 (106)
T KOG0907|consen 92 GAN---------KAELEKKIAKH 105 (106)
T ss_pred cCC---------HHHHHHHHHhc
Confidence 997 56888887765
No 13
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.88 E-value=1.9e-21 Score=138.50 Aligned_cols=100 Identities=24% Similarity=0.359 Sum_probs=93.8
Q ss_pred eeecCChhhHHHHHhc-CCcEEEEec-CCChhhHHHHHHHHHHHHHcC-CeEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 69 YSEIQAEKDFFSVVKA-SDRVVCHFY-RENWPCKVMDKHMSILAKKHI-ETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~-~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~-~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
|..+ |.++|.+.+.+ .+++||+|| +||++|+.+.|.|.++++.++ ++.|+.+|++.++.++++|+|.++||+++|+
T Consensus 1 v~~l-t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVL-TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEE-STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEEC-CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 3567 89999999998 667999999 999999999999999999999 6999999999999999999999999999999
Q ss_pred CCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 146 NAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 146 ~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+|+.+.++.|.. +.+.|..||++|
T Consensus 80 ~g~~~~~~~g~~--------~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPR--------NAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSS--------SHHHHHHHHHHH
T ss_pred CCcEEEEEECCC--------CHHHHHHHHHcC
Confidence 999999999987 799999999875
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.87 E-value=2.1e-21 Score=143.21 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=92.9
Q ss_pred cCCCceeecCChhhHHHHHhcCCc-EEEEec-CCChh--hH--HHHHHHHHHHHHc--CC-eEEEEEEcCCChhHHHhCC
Q 028334 64 LGHGDYSEIQAEKDFFSVVKASDR-VVCHFY-RENWP--CK--VMDKHMSILAKKH--IE-TRFVKIHAEKSPFLAERLK 134 (210)
Q Consensus 64 ~~~~~v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~--C~--~~~~~l~~la~~~--~~-v~f~~vd~~~~~~l~~~~~ 134 (210)
.|...+..+ |.++|.+.|.+++. +|++|| +||+| |+ ++.|++.++|.++ .+ +.|++||+++++.++++|+
T Consensus 6 ~~~~~v~~l-t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~ 84 (120)
T cd03065 6 DGKDRVIDL-NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLG 84 (120)
T ss_pred CCCcceeeC-ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC
Confidence 345578889 89999999998886 777788 88988 99 8999999999998 54 9999999999999999999
Q ss_pred CCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 135 IVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 135 i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|+++||+++|++|+++. ++|.. +.+.|..||.+
T Consensus 85 I~~iPTl~lfk~G~~v~-~~G~~--------~~~~l~~~l~~ 117 (120)
T cd03065 85 LDEEDSIYVFKDDEVIE-YDGEF--------AADTLVEFLLD 117 (120)
T ss_pred CccccEEEEEECCEEEE-eeCCC--------CHHHHHHHHHH
Confidence 99999999999999987 99988 78999999875
No 15
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.86 E-value=1.4e-20 Score=135.17 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=86.9
Q ss_pred ecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCCCCcEEEEEECC
Q 028334 71 EIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIVVLPTLALIKNA 147 (210)
Q Consensus 71 ~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G 147 (210)
.+++.++|...+.++++++|+|| +||++|+.+.|.|..++..|++ +.|+.+|++ .+.++++|+|+++||+++|++|
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 45689999999988888999999 9999999999999999999874 789999999 7789999999999999999999
Q ss_pred EEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 148 KVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 148 ~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
+.+.+..|.. ...|.++|.+
T Consensus 82 ~~~~~~~G~~---------~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRGAN---------APLLNKTITE 101 (102)
T ss_pred EEEEEEecCC---------hHHHHHHHhh
Confidence 9999999965 6778887764
No 16
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=99.86 E-value=4.4e-21 Score=150.71 Aligned_cols=174 Identities=24% Similarity=0.360 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHHHH--HHHHh-----h-hHHHHHHhccC--ChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecC
Q 028334 4 PKVQEILEKQLLTVA--KAVEE-----K-LDEEIAAIDRL--DDDDLEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQ 73 (210)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~-----~-~~~~~~~ld~l--dd~~le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~ 73 (210)
|.-++|++|+.+-.. .+... + ...|...+.+. |+.+|+.||++||++|.+++.. ++.|+.|+++.
T Consensus 70 ~~~~~li~q~s~~~~~~~Kd~kEkvsrkms~~E~~~m~~~~~de~~L~~yr~qrm~eMrq~l~~-----gp~~~~V~El~ 144 (273)
T KOG3171|consen 70 SKNQKLIEQMSSPQSRNGKDSKEKVSRKMSIQEYELMHKEKEDENCLRKYRRQRMQEMRQKLSF-----GPRYGFVYELE 144 (273)
T ss_pred hhHHHHHHHhcchhhccchhhHHHhhccccHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHhhc-----CCccceEEEec
Confidence 346788888854322 22211 1 23333333333 7788999999999999999975 35589999999
Q ss_pred ChhhHHHHHhcCCc---EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEE
Q 028334 74 AEKDFFSVVKASDR---VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 74 t~~~f~~~v~~~~~---vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
+.++|...|.+.-. ++||.| +....|-++...+.-||..||-++|+++-.+.- ....+|...++||++||++|++
T Consensus 145 ~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~n~lP~LliYkgGeL 223 (273)
T KOG3171|consen 145 TGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSLNVLPTLLIYKGGEL 223 (273)
T ss_pred cchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcccCCceEEEeeCCch
Confidence 99999999987743 899999 999999999999999999999999999987755 3578899999999999999999
Q ss_pred EEEEecccC-CCCCCCCCHHHHHHHHHHCCCcccCCCC
Q 028334 150 DDYVVGFDE-LGGTDEFSTEELEERLAKAQVIFLEGES 186 (210)
Q Consensus 150 v~~~~G~~~-~g~~~~~~~~~L~~~L~~~~~l~~~~~~ 186 (210)
++.++-... +| .+|....|+.||+.+|++ |+...
T Consensus 224 IgNFv~va~qlg--edffa~dle~FL~e~gll-pe~ev 258 (273)
T KOG3171|consen 224 IGNFVSVAEQLG--EDFFAGDLESFLNEYGLL-PEREV 258 (273)
T ss_pred hHHHHHHHHHHh--hhhhhhhHHHHHHHcCCC-cccce
Confidence 999886543 33 577889999999999999 76664
No 17
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=6.6e-21 Score=136.36 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=88.0
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
.++++ +.++|...+.++..++|.|| +||++|+.+.|.|.++++.+++ +.|++||++.++.++++|+|.++||+++|+
T Consensus 2 ~~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTL-DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEc-CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 36788 89999999988877999999 9999999999999999999986 899999999999999999999999999999
Q ss_pred CCEEEEEEecccCCCCCCCCCHHHHHHH
Q 028334 146 NAKVDDYVVGFDELGGTDEFSTEELEER 173 (210)
Q Consensus 146 ~G~~v~~~~G~~~~g~~~~~~~~~L~~~ 173 (210)
+|+.+.++.|.. +.+.|..|
T Consensus 81 ~g~~~~~~~G~~--------~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDR--------SKESLVKF 100 (101)
T ss_pred CCCCcccCCCCC--------CHHHHHhh
Confidence 999888888876 67776654
No 18
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.85 E-value=1.1e-20 Score=138.24 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=88.2
Q ss_pred CCceeecCChhhHHHH---HhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHH-HhCCCCCCc
Q 028334 66 HGDYSEIQAEKDFFSV---VKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLA-ERLKIVVLP 139 (210)
Q Consensus 66 ~~~v~~i~t~~~f~~~---v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~-~~~~i~~vP 139 (210)
.+.+.++ +..+|.+. +.++..++|.|| |||++|+.+.|.|+++++.|.+ +.|++||++.++.++ ++|+|.++|
T Consensus 8 ~~~v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~P 86 (113)
T cd03006 8 RSPVLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFP 86 (113)
T ss_pred CCCeEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccC
Confidence 4568999 99999987 456666999999 9999999999999999999987 899999999999898 589999999
Q ss_pred EEEEEECCEEEEEEecccCCCCCCCCCHHHHHHH
Q 028334 140 TLALIKNAKVDDYVVGFDELGGTDEFSTEELEER 173 (210)
Q Consensus 140 tll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~ 173 (210)
|+++|++|+...++.|.. +.+.|..|
T Consensus 87 Tl~lf~~g~~~~~y~G~~--------~~~~i~~~ 112 (113)
T cd03006 87 VIHLYYRSRGPIEYKGPM--------RAPYMEKF 112 (113)
T ss_pred EEEEEECCccceEEeCCC--------CHHHHHhh
Confidence 999999999888898887 67777665
No 19
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.6e-21 Score=158.29 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=97.1
Q ss_pred ceeecCChhhHHHHHhcCC---cEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEE
Q 028334 68 DYSEIQAEKDFFSVVKASD---RVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLA 142 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~---~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll 142 (210)
.+.+| |..+|...|...+ +|+|+|| |||++|+.+.|.|++++..|.+ +++++||++.++.++..|||+++||++
T Consensus 24 ~I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 24 GIKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred cceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 48999 9999999987555 4999999 9999999999999999999998 999999999999999999999999999
Q ss_pred EEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 143 LIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 143 ~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
.|++|+.+..|.|.. +.+.|..||.++..-
T Consensus 103 af~dGqpVdgF~G~q--------Pesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQ--------PESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCC--------cHHHHHHHHHHhcCh
Confidence 999999999999998 688999999998654
No 20
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.84 E-value=3.5e-20 Score=134.23 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=83.9
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CC--ChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RE--NWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~w--C~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
.+.++ +..+|.+.+..+..+||.|| +| |++|+.+.|.|++++++|++ +.|+++|++.++.++.+|+|+++||+++
T Consensus 11 ~~~~~-~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 11 GWPRV-DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CCccc-ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 36678 89999988888888999999 97 99999999999999999988 8999999999999999999999999999
Q ss_pred EECCEEEEEEeccc
Q 028334 144 IKNAKVDDYVVGFD 157 (210)
Q Consensus 144 ~~~G~~v~~~~G~~ 157 (210)
|++|+.+.++.|..
T Consensus 90 fkdGk~v~~~~G~~ 103 (111)
T cd02965 90 FRDGRYVGVLAGIR 103 (111)
T ss_pred EECCEEEEEEeCcc
Confidence 99999999999987
No 21
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=2.3e-20 Score=134.04 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=86.7
Q ss_pred ceeecCChhhHHHHHhcCC-cEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 68 DYSEIQAEKDFFSVVKASD-RVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~-~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
.+.++ +.++|.+.+...+ +++|+|| +||++|+.+.|.|++++.+|.+ +.|+++|+++++.++++|+|.++||+++|
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 2 SVITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 46788 8999999987654 5999999 9999999999999999999876 99999999999999999999999999999
Q ss_pred ECC-EEEEEEecccCCCCCCCCC-HHHHHHHH
Q 028334 145 KNA-KVDDYVVGFDELGGTDEFS-TEELEERL 174 (210)
Q Consensus 145 ~~G-~~v~~~~G~~~~g~~~~~~-~~~L~~~L 174 (210)
++| +.+.++.|.. + .+.|..||
T Consensus 81 ~~g~~~~~~~~G~~--------~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWH--------RDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCC--------CCHHHHHhhC
Confidence 987 8899998876 4 67777664
No 22
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.84 E-value=3.9e-20 Score=139.65 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=88.0
Q ss_pred eeecCChhhHHHHHh--cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEE-E
Q 028334 69 YSEIQAEKDFFSVVK--ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLA-L 143 (210)
Q Consensus 69 v~~i~t~~~f~~~v~--~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll-~ 143 (210)
+.++.+.++|.+.+. ..+.|||.|| +||+||+.+.|.|+++++++++ +.|++||++++++++..|+|.+.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 556778999999996 3445999999 9999999999999999999998 889999999999999999999776666 8
Q ss_pred EECCE-EEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 144 IKNAK-VDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 144 ~~~G~-~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|++|+ .+.+.+|...--+....+.+.|.+.+..
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 89999 8999999431000001267777777765
No 23
>PRK10996 thioredoxin 2; Provisional
Probab=99.84 E-value=9e-20 Score=138.21 Aligned_cols=102 Identities=24% Similarity=0.369 Sum_probs=93.8
Q ss_pred CceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 67 GDYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
+.++.+ +..+|...+.+++.++|+|| +||++|+.+.|.|.+++.++.+ +.|+++|++.++.++++|+|.++||+++|
T Consensus 35 ~~~i~~-~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 35 GEVINA-TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CCCEEc-CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 457777 88999999888888999999 9999999999999999998765 99999999999999999999999999999
Q ss_pred ECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 145 KNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 145 ~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
++|+++.++.|.. +.+.|+.||.++
T Consensus 114 ~~G~~v~~~~G~~--------~~e~l~~~l~~~ 138 (139)
T PRK10996 114 KNGQVVDMLNGAV--------PKAPFDSWLNEA 138 (139)
T ss_pred ECCEEEEEEcCCC--------CHHHHHHHHHHh
Confidence 9999999999987 789999999864
No 24
>PTZ00051 thioredoxin; Provisional
Probab=99.83 E-value=7.2e-20 Score=129.94 Aligned_cols=89 Identities=25% Similarity=0.409 Sum_probs=83.5
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECC
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNA 147 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G 147 (210)
+.++.+.++|...+..++.++|+|| +||++|+.+.|.|.++++.++++.|+.+|+++++.++++|+|.++||+++|++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 4567788899998888888999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccc
Q 028334 148 KVDDYVVGFD 157 (210)
Q Consensus 148 ~~v~~~~G~~ 157 (210)
+++.++.|..
T Consensus 82 ~~~~~~~G~~ 91 (98)
T PTZ00051 82 SVVDTLLGAN 91 (98)
T ss_pred eEEEEEeCCC
Confidence 9999999975
No 25
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.83 E-value=9.8e-20 Score=128.85 Aligned_cols=91 Identities=24% Similarity=0.343 Sum_probs=81.7
Q ss_pred hHHHHHhcC--CcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEE
Q 028334 77 DFFSVVKAS--DRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDY 152 (210)
Q Consensus 77 ~f~~~v~~~--~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~ 152 (210)
+|.+.+.++ ++++|+|| +||++|+.+.|.+++++..|++ +.|+++|++.++.++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566777544 46999999 9999999999999999999976 8999999999999999999999999999999999999
Q ss_pred EecccCCCCCCCCCHHHHHHHHH
Q 028334 153 VVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 153 ~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
+.|.. +.+.|..+|+
T Consensus 82 ~~g~~--------~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQ--------PEEQLRQMLD 96 (96)
T ss_pred ecCCC--------CHHHHHHHhC
Confidence 99977 6888888873
No 26
>PRK09381 trxA thioredoxin; Provisional
Probab=99.83 E-value=1.7e-19 Score=130.62 Aligned_cols=101 Identities=24% Similarity=0.324 Sum_probs=91.2
Q ss_pred ceeecCChhhHHHHHhc-CCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 68 DYSEIQAEKDFFSVVKA-SDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~-~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
.+.++ +..+|.+.+.+ +.+++|+|| +||++|+.+.|.|+++++.|++ +.|+.+|++..+.++++|++.++||+++|
T Consensus 4 ~v~~~-~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 4 KIIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred cceee-ChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 47788 78899987654 455999999 9999999999999999999976 89999999999999999999999999999
Q ss_pred ECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 145 KNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 145 ~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
++|+++.++.|.. +.+.|+.+|..+
T Consensus 83 ~~G~~~~~~~G~~--------~~~~l~~~i~~~ 107 (109)
T PRK09381 83 KNGEVAATKVGAL--------SKGQLKEFLDAN 107 (109)
T ss_pred eCCeEEEEecCCC--------CHHHHHHHHHHh
Confidence 9999999999987 688899998765
No 27
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-20 Score=148.84 Aligned_cols=100 Identities=27% Similarity=0.332 Sum_probs=92.4
Q ss_pred eeecCChhhHHHHHhcCC--cEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 69 YSEIQAEKDFFSVVKASD--RVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~--~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
|+.|.+..+|...+..+. .|+|+|+ .||+||+++.|+|..++.+||+..|++||+++++..+..+||.+.||+++|+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 678888999999997766 4999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 146 NAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 146 ~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+|..+.++.|.. ...|+..+.+|
T Consensus 83 ng~kid~~qGAd---------~~gLe~kv~~~ 105 (288)
T KOG0908|consen 83 NGVKIDQIQGAD---------ASGLEEKVAKY 105 (288)
T ss_pred cCeEeeeecCCC---------HHHHHHHHHHH
Confidence 999999999997 66777777765
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.82 E-value=1.4e-19 Score=132.00 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=86.9
Q ss_pred eecCChhhHHHHHh---cCCcEEEEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 70 SEIQAEKDFFSVVK---ASDRVVCHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 70 ~~i~t~~~f~~~v~---~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
..+ +.++|.+.+. .+.+++|+|| |||++|+.+.|.|.+++++++ ++.|++||++..+.++.+|+|.++||+++
T Consensus 7 ~~~-~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 7 YSL-TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred hee-eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 345 7788887664 4566999999 999999999999999999986 48999999999999999999999999999
Q ss_pred EECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 144 IKNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 144 ~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|++|+.+.++.|.. +.+.|..+|.+
T Consensus 86 ~~~g~~~~~~~G~~--------~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSF--------TKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCC--------CHHHHHHHHhc
Confidence 99999999999977 68889998875
No 29
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.82 E-value=2.1e-19 Score=127.24 Aligned_cols=92 Identities=32% Similarity=0.560 Sum_probs=82.9
Q ss_pred ChhhHHHHHhcC--CcEEEEec-CCChhhHHHHHHHHHHHHH-cCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEE
Q 028334 74 AEKDFFSVVKAS--DRVVCHFY-RENWPCKVMDKHMSILAKK-HIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 74 t~~~f~~~v~~~--~~vvV~fy-~wC~~C~~~~~~l~~la~~-~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
|.++|.+.+... +.++|+|| +||++|+.+.|.|.+++.+ ++.+.|+++|+++++.++.+|+|.++||+++|++|++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 457888888877 67999999 9999999999999999999 5569999999999999999999999999999999999
Q ss_pred EEEEecccCCCCCCCCCHHHHHHHH
Q 028334 150 DDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 150 v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
+.++.|.. .+.|.+.+
T Consensus 81 ~~~~~g~~---------~~~l~~~~ 96 (97)
T cd02984 81 VDRVSGAD---------PKELAKKV 96 (97)
T ss_pred EEEEeCCC---------HHHHHHhh
Confidence 99999976 67777665
No 30
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=1.6e-19 Score=130.69 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=85.0
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHc----C---CeEEEEEEcCCChhHHHhCCCCCCc
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKH----I---ETRFVKIHAEKSPFLAERLKIVVLP 139 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~----~---~v~f~~vd~~~~~~l~~~~~i~~vP 139 (210)
.+.++ +.++|...+..++.++|+|| |||++|+.+.|.|.++++.+ + .+.|+++|++.++.++++|+|.++|
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSL-TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEc-CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47788 89999999988778999999 99999999999999998864 2 3899999999999999999999999
Q ss_pred EEEEEECCEE-EEEEecccCCCCCCCCCHHHHHHHH
Q 028334 140 TLALIKNAKV-DDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 140 tll~~~~G~~-v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
|+++|++|++ ...+.|.. +.+.|..||
T Consensus 81 tl~~~~~g~~~~~~~~g~~--------~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQR--------SVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCC--------CHHHHHhhC
Confidence 9999999984 46667765 567776664
No 31
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.82 E-value=2.7e-19 Score=127.80 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=85.0
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
.++++ +.++|...+. + .++|.|| +||++|+.+.|.|.+++..+. ++.|+++|++.++.++++|+|.++||+++|
T Consensus 2 ~v~~l-~~~~f~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEc-ChhhHHHHhC-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 47889 8999998764 3 3889999 999999999999999998865 389999999999999999999999999999
Q ss_pred ECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 145 KNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 145 ~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
++|++ .++.|.. +.+.|..+|.+
T Consensus 79 ~~g~~-~~~~G~~--------~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGVF-RRYQGPR--------DKEDLISFIEE 101 (101)
T ss_pred CCCCE-EEecCCC--------CHHHHHHHHhC
Confidence 99985 7788876 68889888753
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.82 E-value=2.2e-19 Score=128.01 Aligned_cols=96 Identities=22% Similarity=0.286 Sum_probs=86.3
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC----CeEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI----ETRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~----~v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
++++ +.++|...+.++ .++|.|| +||++|+.+.|.|.+++.++. .+.|+++|++.++.+++.|+|.++||+++
T Consensus 2 ~~~l-~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLEL-TEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeEC-CHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 5678 889999999765 5999999 999999999999999999875 38999999999999999999999999999
Q ss_pred EECCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 144 IKNAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 144 ~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
|++|+.+.++.|.. +.+.|..||
T Consensus 80 ~~~g~~~~~~~G~~--------~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTR--------DLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCC--------CHHHHHhhC
Confidence 99999999999987 677777764
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.81 E-value=9.8e-19 Score=134.11 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=90.6
Q ss_pred CCceeecCChhhHHHHHhcC--CcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCCC---
Q 028334 66 HGDYSEIQAEKDFFSVVKAS--DRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIVV--- 137 (210)
Q Consensus 66 ~~~v~~i~t~~~f~~~v~~~--~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~~--- 137 (210)
...+.++ +.++|...+..+ ..++|+|| |||++|+.+.|.|+++++++.+ ++|++||+++++.++++|+|.+
T Consensus 27 ~~~v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCC
Confidence 4578889 889999988544 35999999 9999999999999999999863 9999999999999999999988
Q ss_pred ---CcEEEEEECCEEEEEEecccCC-CC--CCCCCHHHHHHHH
Q 028334 138 ---LPTLALIKNAKVDDYVVGFDEL-GG--TDEFSTEELEERL 174 (210)
Q Consensus 138 ---vPtll~~~~G~~v~~~~G~~~~-g~--~~~~~~~~L~~~L 174 (210)
+||+++|++|+.+.++.|...- |+ +..|+.+.+.+.+
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred cCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhc
Confidence 9999999999999999995432 22 2456776665543
No 34
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=3.4e-19 Score=127.66 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=77.4
Q ss_pred hHHHHHh--cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC-CChhHHHhCCCCCCcEEEEEECCEEEEE
Q 028334 77 DFFSVVK--ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE-KSPFLAERLKIVVLPTLALIKNAKVDDY 152 (210)
Q Consensus 77 ~f~~~v~--~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~-~~~~l~~~~~i~~vPtll~~~~G~~v~~ 152 (210)
.+.+.+. +++.++|+|| +||++|+.+.|.|+++++.|+++.|+.||.+ ..+.++++|+|.++||+++|++| .+.+
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~ 86 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVR 86 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE
Confidence 3444443 4555999999 9999999999999999999999999999999 78999999999999999999999 8889
Q ss_pred EecccCCCCCCCCCHHHHHHHH
Q 028334 153 VVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 153 ~~G~~~~g~~~~~~~~~L~~~L 174 (210)
+.|.. +.+.|..|+
T Consensus 87 ~~G~~--------~~~~l~~f~ 100 (100)
T cd02999 87 YNGTR--------TLDSLAAFY 100 (100)
T ss_pred ecCCC--------CHHHHHhhC
Confidence 99987 677777663
No 35
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.80 E-value=1.7e-18 Score=131.64 Aligned_cols=96 Identities=14% Similarity=0.253 Sum_probs=83.3
Q ss_pred ChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCC--hhHHHhCCCCCCcEEEEEE-CCE
Q 028334 74 AEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKS--PFLAERLKIVVLPTLALIK-NAK 148 (210)
Q Consensus 74 t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~--~~l~~~~~i~~vPtll~~~-~G~ 148 (210)
...+|..++..++++||+|| +||++|+.+.|.|.+++..|.+ +.|+.|+++.. ..++..|+|.++||++||. +|+
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 34567777788888999999 9999999999999999999875 78988888764 5789999999999999994 999
Q ss_pred EEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 149 VDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 149 ~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
++.++.|.. ..+.|..+|.+.
T Consensus 89 ~v~~~~G~~--------~~~~l~~~l~~l 109 (142)
T cd02950 89 EEGQSIGLQ--------PKQVLAQNLDAL 109 (142)
T ss_pred EEEEEeCCC--------CHHHHHHHHHHH
Confidence 999999987 678788888764
No 36
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.79 E-value=9.8e-19 Score=126.72 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=72.3
Q ss_pred hhhHHHHHh--cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEE
Q 028334 75 EKDFFSVVK--ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 75 ~~~f~~~v~--~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
.++|.+.+. +.+.|||+|| +||+||+.+.|.|++++.+|++ +.|++||+++.+++++.|+|.+.||++||++|+-+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 456777776 3455999999 9999999999999999999999 99999999999999999999999999999999876
Q ss_pred EEEecc
Q 028334 151 DYVVGF 156 (210)
Q Consensus 151 ~~~~G~ 156 (210)
.-=.|.
T Consensus 82 ~~d~gt 87 (114)
T cd02986 82 KVDYGS 87 (114)
T ss_pred EEecCC
Confidence 544443
No 37
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.79 E-value=1.4e-18 Score=124.14 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=87.1
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC--C-eEEEEEEcCC--ChhHHHhCCCCCCcEEE
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI--E-TRFVKIHAEK--SPFLAERLKIVVLPTLA 142 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~--~-v~f~~vd~~~--~~~l~~~~~i~~vPtll 142 (210)
+.++ +..+|...+.+++.++|.|| +||++|+.+.|.+..+++.++ + +.|+.+|++. ++.++..|+|.++||++
T Consensus 2 ~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHL-TDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEe-chHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 6778 78899999998889999999 999999999999999998876 3 8899999998 89999999999999999
Q ss_pred EEECCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 143 LIKNAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 143 ~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
+|++|+++.++.|.. ..+.|..||
T Consensus 81 ~~~~g~~~~~~~g~~--------~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGER--------TAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCC--------CHHHHHhhC
Confidence 999999998888876 677777664
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.79 E-value=2.2e-18 Score=122.06 Aligned_cols=96 Identities=30% Similarity=0.455 Sum_probs=87.3
Q ss_pred ChhhHHHHHhcCC-cEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEE
Q 028334 74 AEKDFFSVVKASD-RVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 74 t~~~f~~~v~~~~-~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
+.++|...+.+.+ .++|+|| +||++|+.+.|.|.++++.+++ +.|+.+|++.++.+.++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 5678888887755 6999999 9999999999999999998885 99999999999999999999999999999999999
Q ss_pred EEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 151 DYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 151 ~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
.++.|.. +.+.|..+|.++
T Consensus 82 ~~~~g~~--------~~~~l~~~l~~~ 100 (101)
T TIGR01068 82 DRSVGAL--------PKAALKQLINKN 100 (101)
T ss_pred eeecCCC--------CHHHHHHHHHhh
Confidence 9988887 678999998763
No 39
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.78 E-value=6.8e-18 Score=125.14 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=83.4
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-----------hHHHhCC-
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-----------FLAERLK- 134 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-----------~l~~~~~- 134 (210)
.+..+ +.++|.+.+.+++.++|+|| +|||+|+.+.|.|.+++++. ++.|+.+|++..+ .+.+.|+
T Consensus 7 ~~~~i-t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVT-TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceec-CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 46778 89999999999999999999 99999999999999999984 4778888888542 4456665
Q ss_pred ---CCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 135 ---IVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 135 ---i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
|.++||+++|++|+.+.+++|... +.++|+.++.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~-------~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSST-------TAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCC-------CHHHHHHHhh
Confidence 556999999999999999999541 6899998874
No 40
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=3.3e-18 Score=123.54 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=84.0
Q ss_pred eeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCC--ChhHHHhCCCCCCcEEEE
Q 028334 69 YSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEK--SPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~--~~~l~~~~~i~~vPtll~ 143 (210)
++++ +..+|...+.+.+. ++|.|| +||++|+.+.|.|.++++.+.+ +.|+.+|++. ++.++..|+|.++||+++
T Consensus 2 v~~l-~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYEL-TPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEc-chhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 5678 89999999877665 999999 9999999999999999999876 8999999998 888999999999999999
Q ss_pred EECCE-----EEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 144 IKNAK-----VDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 144 ~~~G~-----~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
|++|+ ....+.|.. +.+.|..|+
T Consensus 81 ~~~~~~~~~~~~~~~~G~~--------~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGER--------SAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCcc--------CHHHHHHHh
Confidence 99886 345555654 678888876
No 41
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=6.9e-18 Score=120.46 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=84.6
Q ss_pred eeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 69 YSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
+.++ +..+|.+.+.+.+. ++|.|| +||++|+.+.|.|.++++++++ +.|+.+|+++++.++++|+|.++||+++|.
T Consensus 2 v~~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVEL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEc-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 6778 89999999876665 999999 9999999999999999999876 999999999999999999999999999999
Q ss_pred CC-EEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 146 NA-KVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 146 ~G-~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
+| .....+.|.. +.+.|..|+
T Consensus 81 ~~~~~~~~~~g~~--------~~~~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGR--------TAKAIVSAA 102 (103)
T ss_pred CCCcceeecCCCC--------CHHHHHHHh
Confidence 88 4455566654 678887775
No 42
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.77 E-value=7.6e-18 Score=136.82 Aligned_cols=102 Identities=25% Similarity=0.281 Sum_probs=91.2
Q ss_pred CceeecCChhhHHHHHhc-----CCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCc
Q 028334 67 GDYSEIQAEKDFFSVVKA-----SDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLP 139 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~~-----~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vP 139 (210)
..++++ +.++|.+.+.. .++++|.|| |||++|+.+.|.|+++++.+++ +.|+.+|++.++.++++|+|.++|
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 458899 89999998864 356999999 9999999999999999999987 899999999999999999999999
Q ss_pred EEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 140 TLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 140 tll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
|+++|++|+.+....|.. +.+.|..|+.++
T Consensus 109 Tl~~f~~G~~v~~~~G~~--------s~e~L~~fi~~~ 138 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDR--------STEKLAAFALGD 138 (224)
T ss_pred EEEEEECCEEEEeeCCCC--------CHHHHHHHHHHH
Confidence 999999999888777765 688898887764
No 43
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.77 E-value=5.9e-18 Score=120.29 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=86.3
Q ss_pred ChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC---eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEE
Q 028334 74 AEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE---TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 74 t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~---v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
++++|...+.+++.++|.|| +||++|+.+.+.|++++..+.+ +.|+.+|++.++.++.+|+|.++||+++|++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 2 TASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred chhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc
Confidence 67889988887777999999 9999999999999999998874 9999999999999999999999999999998876
Q ss_pred EEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 150 DDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 150 v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+..+.|.. +.+.|..||.++
T Consensus 82 ~~~~~g~~--------~~~~l~~~i~~~ 101 (102)
T TIGR01126 82 PVDYEGGR--------DLEAIVEFVNEK 101 (102)
T ss_pred ceeecCCC--------CHHHHHHHHHhc
Confidence 77788866 688899999874
No 44
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.76 E-value=1.5e-17 Score=121.77 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=78.5
Q ss_pred hHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEE--EE
Q 028334 77 DFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDD--YV 153 (210)
Q Consensus 77 ~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~--~~ 153 (210)
+|...+.+...++|+|| +||++|+.+.|.|++++..++.+.|+.+|+++.+.++..|+|.++||+++|++|.... ++
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 35566666566999999 9999999999999999999877999999999999999999999999999999876655 67
Q ss_pred ecccCCCCCCCCCHHHHHHHHHH
Q 028334 154 VGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 154 ~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
.|.. ....+..+|..
T Consensus 94 ~G~~--------~~~el~~~i~~ 108 (113)
T cd02975 94 YGLP--------AGYEFASLIED 108 (113)
T ss_pred EecC--------chHHHHHHHHH
Confidence 7866 56777777753
No 45
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.76 E-value=4.1e-18 Score=122.44 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=81.4
Q ss_pred hhHHHHHhcCCcEEEEec-CCChhhHHHHHHH---HHHHHHcC-CeEEEEEEcCC----ChhHHHhCCCCCCcEEEEEE-
Q 028334 76 KDFFSVVKASDRVVCHFY-RENWPCKVMDKHM---SILAKKHI-ETRFVKIHAEK----SPFLAERLKIVVLPTLALIK- 145 (210)
Q Consensus 76 ~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l---~~la~~~~-~v~f~~vd~~~----~~~l~~~~~i~~vPtll~~~- 145 (210)
+.|.+++.++++++|.|| +||++|+.+.+.+ .+++..+. ++.|+.+|++. .+.++++|+|.++||++||+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 567888888888999999 9999999999988 67888777 59999999987 46789999999999999998
Q ss_pred -CCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 146 -NAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 146 -~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
+|+.+.++.|.. +.+.|..+|+
T Consensus 82 ~~g~~~~~~~G~~--------~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFL--------TADEFLEALE 104 (104)
T ss_pred CCCCCCccccccc--------CHHHHHHHhC
Confidence 799999999988 7888888773
No 46
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.75 E-value=2.3e-17 Score=117.27 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=78.5
Q ss_pred HHHhcC-CcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecc
Q 028334 80 SVVKAS-DRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGF 156 (210)
Q Consensus 80 ~~v~~~-~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~ 156 (210)
..+.+. ++++|+|| +||++|+.+.|.+.++++++++ +.|+.+|+++.+.+..+|+|.++||+++|++|+++.++.|.
T Consensus 7 ~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~ 86 (97)
T cd02949 7 KLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGV 86 (97)
T ss_pred HHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCC
Confidence 344444 44899999 9999999999999999999875 99999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCHHHHHHHHH
Q 028334 157 DELGGTDEFSTEELEERLA 175 (210)
Q Consensus 157 ~~~g~~~~~~~~~L~~~L~ 175 (210)
. +.+.|..+|+
T Consensus 87 ~--------~~~~~~~~l~ 97 (97)
T cd02949 87 K--------MKSEYREFIE 97 (97)
T ss_pred c--------cHHHHHHhhC
Confidence 8 6888888763
No 47
>PTZ00062 glutaredoxin; Provisional
Probab=99.74 E-value=2.4e-17 Score=131.97 Aligned_cols=87 Identities=8% Similarity=0.056 Sum_probs=77.0
Q ss_pred ChhhHHHHHhcC-CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEE
Q 028334 74 AEKDFFSVVKAS-DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 74 t~~~f~~~v~~~-~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~ 151 (210)
+.++|...+..+ +.+|++|| +||++|+.+.|++.+|+++||+++|++||++ |+|.++||++||++|+++.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 778888888765 66999999 9999999999999999999999999999988 9999999999999999999
Q ss_pred EEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 152 YVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 152 ~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+++|.. +..|...+.++
T Consensus 77 r~~G~~---------~~~~~~~~~~~ 93 (204)
T PTZ00062 77 SLEGCN---------TSTLVSFIRGW 93 (204)
T ss_pred eeeCCC---------HHHHHHHHHHH
Confidence 999987 45555555543
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.74 E-value=1.9e-17 Score=116.52 Aligned_cols=95 Identities=25% Similarity=0.290 Sum_probs=84.2
Q ss_pred ecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHc---CCeEEEEEEcCCChhHHHhCCCCCCcEEEEEEC
Q 028334 71 EIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKH---IETRFVKIHAEKSPFLAERLKIVVLPTLALIKN 146 (210)
Q Consensus 71 ~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~---~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~ 146 (210)
++ +.++|.+.+.+++.++|.|| +||++|+.+.|.|.+++..+ ..+.|+.+|++.++.+++.|+|.++||+++|++
T Consensus 2 ~l-~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 EL-TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cc-cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46 78899999999999999999 99999999999999999998 349999999999999999999999999999987
Q ss_pred C-EEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 147 A-KVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 147 G-~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
| ....++.|.. +.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~--------~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPR--------TLESLVEFI 101 (101)
T ss_pred CCcccccCCCCc--------CHHHHHhhC
Confidence 7 7777777765 577777653
No 49
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.73 E-value=3.5e-17 Score=117.68 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=78.9
Q ss_pred hhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC----CeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEE
Q 028334 75 EKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI----ETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 75 ~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~----~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
.++|.+ +.+++.++|+|| +||++|+.+.|.|.+++..|. ++.++.+|++..+.++++|+|.++||+++|++|.
T Consensus 6 ~~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 6 DDSFKD-VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh-hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 356665 456678999999 999999999999999999873 2899999999999999999999999999998774
Q ss_pred EEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 150 DDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 150 v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
..++.|.. +.+.|..++++.
T Consensus 84 ~~~~~G~~--------~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPR--------TKDDIVEFANRV 103 (104)
T ss_pred ceeecCCC--------CHHHHHHHHHhh
Confidence 45677755 789999998763
No 50
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.72 E-value=1.5e-16 Score=109.84 Aligned_cols=90 Identities=37% Similarity=0.554 Sum_probs=82.3
Q ss_pred hHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEec
Q 028334 77 DFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVG 155 (210)
Q Consensus 77 ~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G 155 (210)
+|...+....+++|.|| +||++|+.+.+.+.+++..++++.|+.+|++..+.++..|++.++||+++|++|+.+..+.|
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 81 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVG 81 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEec
Confidence 56777888788999999 99999999999999999987779999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCHHHHHHHH
Q 028334 156 FDELGGTDEFSTEELEERL 174 (210)
Q Consensus 156 ~~~~g~~~~~~~~~L~~~L 174 (210)
.. +.+.|..+|
T Consensus 82 ~~--------~~~~l~~~i 92 (93)
T cd02947 82 AD--------PKEELEEFL 92 (93)
T ss_pred CC--------CHHHHHHHh
Confidence 77 568888776
No 51
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=6.1e-17 Score=115.54 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=81.2
Q ss_pred eeecCChhhHHHHHhcC-CcEEEEec-CCChhhHHHHHHHHHHHHHcCC---eEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 69 YSEIQAEKDFFSVVKAS-DRVVCHFY-RENWPCKVMDKHMSILAKKHIE---TRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~-~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~---v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
+..+ +.++|.+.+.+. ..++|+|| +||++|+.+.|.|.++++.+++ +.|+++|++.+ .++..+++.++||+++
T Consensus 2 v~~l-~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVV-VGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEE-chhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 5678 889999988766 55999999 9999999999999999998765 89999999987 4788899999999999
Q ss_pred EECCE--EEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 144 IKNAK--VDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 144 ~~~G~--~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
|++|+ ...++.|.. +.+.|..||
T Consensus 80 ~~~~~~~~~~~~~g~~--------~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDR--------TLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCc--------CHHHHHhhC
Confidence 99887 556667765 667776654
No 52
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=6e-17 Score=115.67 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=82.8
Q ss_pred eeecCChhhHHHHHhcCC-cEEEEec-CCChhhHHHHHHHHHHHHHcC---CeEEEEEEcCC-ChhHHHhCCCCCCcEEE
Q 028334 69 YSEIQAEKDFFSVVKASD-RVVCHFY-RENWPCKVMDKHMSILAKKHI---ETRFVKIHAEK-SPFLAERLKIVVLPTLA 142 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~-~vvV~fy-~wC~~C~~~~~~l~~la~~~~---~v~f~~vd~~~-~~~l~~~~~i~~vPtll 142 (210)
+.++ +..+|...+.+.+ +++|+|| +||++|+.+.|.+..+++.+. .+.|+++|++. ++.++++|+|.++||++
T Consensus 2 ~~~l-~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 2 VVEL-TDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred eEEc-chhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 5678 7889999887666 6999999 999999999999999999976 39999999999 89999999999999999
Q ss_pred EEECC-EEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 143 LIKNA-KVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 143 ~~~~G-~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
+|.+| +....+.|.. +.+.|..||
T Consensus 81 ~~~~~~~~~~~~~g~~--------~~~~l~~~i 105 (105)
T cd02998 81 FFPKGSTEPVKYEGGR--------DLEDLVKFV 105 (105)
T ss_pred EEeCCCCCccccCCcc--------CHHHHHhhC
Confidence 99866 5555665654 678877764
No 53
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.70 E-value=2.4e-16 Score=114.37 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=79.3
Q ss_pred ceeecCChhhHHHHHh---cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCC-ChhHHH-hCCCCCCc
Q 028334 68 DYSEIQAEKDFFSVVK---ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEK-SPFLAE-RLKIVVLP 139 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~---~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~-~~~l~~-~~~i~~vP 139 (210)
.++++ +.++|...+. .+++++|.|| +||++|+.+.|.|.++++.|.+ +.|+.||++. ...++. .|++.++|
T Consensus 2 ~v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 47788 8889998874 3566999999 9999999999999999999874 8999999997 466665 59999999
Q ss_pred EEEEEECC-EEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 140 TLALIKNA-KVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 140 tll~~~~G-~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
|+++|.+| .....+.|.. .+.+.|..||
T Consensus 81 ti~~f~~~~~~~~~y~g~~-------~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQ-------RDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCC-------CCHHHHHhhC
Confidence 99999755 4566666631 1566666653
No 54
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.66 E-value=1.3e-15 Score=112.94 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=78.7
Q ss_pred hhhHHHHHhcC-CcEEEEec-CCChhhHHHHHHHH---HHHHHcCC-eEEEEEEcCCC-------------hhHHHhCCC
Q 028334 75 EKDFFSVVKAS-DRVVCHFY-RENWPCKVMDKHMS---ILAKKHIE-TRFVKIHAEKS-------------PFLAERLKI 135 (210)
Q Consensus 75 ~~~f~~~v~~~-~~vvV~fy-~wC~~C~~~~~~l~---~la~~~~~-v~f~~vd~~~~-------------~~l~~~~~i 135 (210)
.+++..+..++ ++++|+|| +||++|+.+.|.+. .+...+.+ +.|+.+|++.. ..++..|+|
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 45677888888 88999999 99999999999874 55555544 88999998864 678999999
Q ss_pred CCCcEEEEEE-C-CEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 136 VVLPTLALIK-N-AKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 136 ~~vPtll~~~-~-G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
.++||++||. + |+++.++.|.. +.+.+..+|..
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~--------~~~~~~~~l~~ 117 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYL--------PPDEFLAYLEY 117 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCC--------CHHHHHHHHHH
Confidence 9999999997 4 79999999987 67888888765
No 55
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.66 E-value=1.4e-15 Score=111.38 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=74.4
Q ss_pred ceeecCChhhHHHHHhcCC-cEEEEec-CCChhhHHHHHHHHHHHHHcC---C-eEEEEEEcC--CChhHHHhCCCCCCc
Q 028334 68 DYSEIQAEKDFFSVVKASD-RVVCHFY-RENWPCKVMDKHMSILAKKHI---E-TRFVKIHAE--KSPFLAERLKIVVLP 139 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~-~vvV~fy-~wC~~C~~~~~~l~~la~~~~---~-v~f~~vd~~--~~~~l~~~~~i~~vP 139 (210)
.++++ +.++|...+.++. +++|.|| +||++|+.+.|.|.+++..+. + +.|+.+|++ .++.+++.|+|.++|
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 80 (114)
T cd02992 2 PVIVL-DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP 80 (114)
T ss_pred CeEEC-CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence 47788 8999999988776 5999999 999999999999999999764 3 899999975 467899999999999
Q ss_pred EEEEEECCEEEEEEeccc
Q 028334 140 TLALIKNAKVDDYVVGFD 157 (210)
Q Consensus 140 tll~~~~G~~v~~~~G~~ 157 (210)
|+++|++|. .....|..
T Consensus 81 t~~lf~~~~-~~~~~~~~ 97 (114)
T cd02992 81 TLRYFPPFS-KEATDGLK 97 (114)
T ss_pred EEEEECCCC-ccCCCCCc
Confidence 999999888 44444444
No 56
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.2e-16 Score=136.41 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=94.3
Q ss_pred CCceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC----CeEEEEEEcCCChhHHHhCCCCCCcE
Q 028334 66 HGDYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI----ETRFVKIHAEKSPFLAERLKIVVLPT 140 (210)
Q Consensus 66 ~~~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~----~v~f~~vd~~~~~~l~~~~~i~~vPt 140 (210)
...+..+ +.++|...+..++.++|.|| |||++|+.+.|.+++.|.... .+++++||++.+..++.+|+|+++||
T Consensus 24 ~~~Vl~L-t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 24 EEDVLVL-TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred ccceEEE-ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 4568999 99999999999999999999 999999999999999998854 39999999999999999999999999
Q ss_pred EEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 141 LALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 141 ll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+.+|++|.....+.|.+ ..+.+..||++.
T Consensus 103 lkiFrnG~~~~~Y~G~r--------~adgIv~wl~kq 131 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPR--------EADGIVKWLKKQ 131 (493)
T ss_pred EEEEecCCcceeccCcc--------cHHHHHHHHHhc
Confidence 99999999877888888 688888888864
No 57
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.61 E-value=6.1e-15 Score=131.06 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=90.0
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC----CeEEEEEEcCCChhHHHhCCCCCCcEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI----ETRFVKIHAEKSPFLAERLKIVVLPTLA 142 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~----~v~f~~vd~~~~~~l~~~~~i~~vPtll 142 (210)
.+..+ +.++|...+.+++.++|.|| +||++|+.+.|.+.+++..+. .+.|+.||++.++.++++|+|.++||++
T Consensus 2 ~v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 36778 89999999998888999999 999999999999999888753 3899999999999999999999999999
Q ss_pred EEECCEE-EEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 143 LIKNAKV-DDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 143 ~~~~G~~-v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+|++|+. +..+.|.. +.+.|..|+.+.
T Consensus 81 ~~~~g~~~~~~~~g~~--------~~~~l~~~i~~~ 108 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPR--------DADGIVKYMKKQ 108 (462)
T ss_pred EEeCCccceeEecCCC--------CHHHHHHHHHHh
Confidence 9999988 78888876 677888888764
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.61 E-value=7.5e-15 Score=131.49 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=91.0
Q ss_pred CceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHc----CCeEEEEEEcCCChhHHHhCCCCCCcEE
Q 028334 67 GDYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKH----IETRFVKIHAEKSPFLAERLKIVVLPTL 141 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~----~~v~f~~vd~~~~~~l~~~~~i~~vPtl 141 (210)
..+..+ +..+|...+.+++.++|.|| +||++|+.+.|.+.+++..+ +++.|+++|++.++.++++|+|.++||+
T Consensus 32 ~~v~~l-~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVL-TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEc-chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 457888 89999999988888999999 99999999999999988765 3499999999999999999999999999
Q ss_pred EEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 142 ALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 142 l~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
++|++|+.+ ++.|.. +.+.|..|+.++
T Consensus 111 ~~~~~g~~~-~y~g~~--------~~~~l~~~l~~~ 137 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGR--------TADGIVSWIKKL 137 (477)
T ss_pred EEEECCceE-EecCCC--------CHHHHHHHHHHh
Confidence 999999877 787876 789999999885
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.60 E-value=9e-15 Score=130.98 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=91.9
Q ss_pred CCceeecCChhhHHHHHhc-CCcEEEEec-CCChhhHHHHHHHHHHHHHcCC---eEEEEEEcCCChhHHHhCCCCCCcE
Q 028334 66 HGDYSEIQAEKDFFSVVKA-SDRVVCHFY-RENWPCKVMDKHMSILAKKHIE---TRFVKIHAEKSPFLAERLKIVVLPT 140 (210)
Q Consensus 66 ~~~v~~i~t~~~f~~~v~~-~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~---v~f~~vd~~~~~~l~~~~~i~~vPt 140 (210)
.+.+..+ +.++|...+.+ ++.|+|.|| |||++|+.+.|.|++++..+.+ +.|+++|++.+...+..|+++++||
T Consensus 356 ~~~v~~l-~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt 434 (477)
T PTZ00102 356 DGPVKVV-VGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434 (477)
T ss_pred CCCeEEe-cccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCe
Confidence 4458888 89999998654 455999999 9999999999999999998764 8999999999988899999999999
Q ss_pred EEEEECCEEE-EEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 141 LALIKNAKVD-DYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 141 ll~~~~G~~v-~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
+++|++|..+ .++.|.. +.+.+..+|.++..-
T Consensus 435 ~~~~~~~~~~~~~~~G~~--------~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 435 ILFVKAGERTPIPYEGER--------TVEGFKEFVNKHATN 467 (477)
T ss_pred EEEEECCCcceeEecCcC--------CHHHHHHHHHHcCCC
Confidence 9999877654 5777876 789999999998864
No 60
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.59 E-value=1.6e-14 Score=128.27 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=82.4
Q ss_pred CceeecCChhhHHHHHh---cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCCh-hH-HHhCCCCCC
Q 028334 67 GDYSEIQAEKDFFSVVK---ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSP-FL-AERLKIVVL 138 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~---~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~-~l-~~~~~i~~v 138 (210)
..++++ +..+|...+. .+.+|||+|| |||++|+.+.|.|++++++|.+ +.|++||++.+. .+ .+.|+|.++
T Consensus 351 ~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 351 NNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 368889 8999999986 5556999999 9999999999999999999864 899999999763 34 478999999
Q ss_pred cEEEEEECCEE-EEEEe-cccCCCCCCCCCHHHHHHHHHH
Q 028334 139 PTLALIKNAKV-DDYVV-GFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 139 Ptll~~~~G~~-v~~~~-G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
||++||++|.. ...+. |.. +.+.|..|++.
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R--------~~e~L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKR--------DVDSLMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCC--------CHHHHHHHHHh
Confidence 99999998852 22343 233 78888888864
No 61
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.57 E-value=1.3e-14 Score=106.77 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=67.3
Q ss_pred cCChhhHHHHHhc--CCcEEEEec-C-------CChhhHHHHHHHHHHHHHcC-CeEEEEEEcCC-------ChhHHHhC
Q 028334 72 IQAEKDFFSVVKA--SDRVVCHFY-R-------ENWPCKVMDKHMSILAKKHI-ETRFVKIHAEK-------SPFLAERL 133 (210)
Q Consensus 72 i~t~~~f~~~v~~--~~~vvV~fy-~-------wC~~C~~~~~~l~~la~~~~-~v~f~~vd~~~-------~~~l~~~~ 133 (210)
+.+.++|.+.+.. +++|+|+|| + ||++|+.+.|.|++++.+++ +++|++||++. +..+...|
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 4467888888876 557999999 5 99999999999999999999 59999999976 45889999
Q ss_pred CCC-CCcEEEEEECCE
Q 028334 134 KIV-VLPTLALIKNAK 148 (210)
Q Consensus 134 ~i~-~vPtll~~~~G~ 148 (210)
+|. ++||+++|++|+
T Consensus 86 ~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 86 KLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CcccCCCEEEEEcCCc
Confidence 998 999999998774
No 62
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.57 E-value=3.3e-14 Score=97.32 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=66.8
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFS 166 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~ 166 (210)
|..|| +||++|+.+.|.|+++++.++. +.++.||+++.+.+.++|++.++||+++ +|+. ++.|.. +
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~--------~ 70 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAP--------T 70 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCC--------C
Confidence 56788 9999999999999999999865 9999999999999999999999999886 8863 677876 6
Q ss_pred HHHHHHHHHH
Q 028334 167 TEELEERLAK 176 (210)
Q Consensus 167 ~~~L~~~L~~ 176 (210)
.+.|..+|.+
T Consensus 71 ~~~l~~~l~~ 80 (82)
T TIGR00411 71 KEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHh
Confidence 8888888865
No 63
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.56 E-value=2.8e-14 Score=104.34 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=78.2
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC----CeEEEEEEc-----CCChhHHHhCCCC--
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI----ETRFVKIHA-----EKSPFLAERLKIV-- 136 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~----~v~f~~vd~-----~~~~~l~~~~~i~-- 136 (210)
++.+ +..+|.+.|.+.+.++|.|| +| +.|.. .|++++||.+|. .+.+++||+ .++..++++|+|.
T Consensus 3 ~v~L-~~~nF~~~v~~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 3 CVDL-DTVTFYKVIPKFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred eeEC-ChhhHHHHHhcCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcC
Confidence 5678 99999999999989999999 66 44444 366666665542 288999999 4578899999999
Q ss_pred CCcEEEEEECCE--EEEEEecc-cCCCCCCCCCHHHHHHHHHHCC
Q 028334 137 VLPTLALIKNAK--VDDYVVGF-DELGGTDEFSTEELEERLAKAQ 178 (210)
Q Consensus 137 ~vPtll~~~~G~--~v~~~~G~-~~~g~~~~~~~~~L~~~L~~~~ 178 (210)
++||+++|++|. ....+.|. . +.+.|..|+.+++
T Consensus 80 gyPTl~lF~~g~~~~~~~Y~G~~r--------~~~~lv~~v~~~~ 116 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPYSGADV--------TVDALQRFLKGNT 116 (116)
T ss_pred CCCEEEEEeCCCcCCCccCCCCcc--------cHHHHHHHHHhcC
Confidence 999999999985 33456664 4 7899999998763
No 64
>PLN02309 5'-adenylylsulfate reductase
Probab=99.56 E-value=4.4e-14 Score=125.33 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=83.4
Q ss_pred CceeecCChhhHHHHHh---cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcC-CChhHHH-hCCCCCC
Q 028334 67 GDYSEIQAEKDFFSVVK---ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAE-KSPFLAE-RLKIVVL 138 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~---~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~-~~~~l~~-~~~i~~v 138 (210)
+.++++ +.++|...+. .++.+||.|| |||++|+.|.|.|.+++..|.+ +.|+++|++ .+..++. .|+|.++
T Consensus 345 ~~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 345 QNVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 468889 8999998874 5556999999 9999999999999999999864 999999999 7777776 6999999
Q ss_pred cEEEEEECCEE-EEEEec-ccCCCCCCCCCHHHHHHHHHH
Q 028334 139 PTLALIKNAKV-DDYVVG-FDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 139 Ptll~~~~G~~-v~~~~G-~~~~g~~~~~~~~~L~~~L~~ 176 (210)
||++||++|.. ...+.| .. +.+.|..|++.
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R--------~~~~L~~fv~~ 455 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKR--------DVDSLLSFVNS 455 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCc--------CHHHHHHHHHH
Confidence 99999997753 233432 23 67889998875
No 65
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.56 E-value=3.2e-14 Score=101.53 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=73.7
Q ss_pred CCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCC--CCcEEEEEEC--CEEEEEEecccC
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIV--VLPTLALIKN--AKVDDYVVGFDE 158 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~--~vPtll~~~~--G~~v~~~~G~~~ 158 (210)
+.++++.|| +||++|..+.|.+.++|++|.+ +.|+.+|+++.+.++..|++. ++||++++++ |.......|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~-- 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE-- 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc--
Confidence 567999999 9999999999999999999977 999999999999999999999 9999999997 6554433333
Q ss_pred CCCCCCCCHHHHHHHHHHC
Q 028334 159 LGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 159 ~g~~~~~~~~~L~~~L~~~ 177 (210)
++.+.|..|+.++
T Consensus 90 ------~~~~~l~~fi~~~ 102 (103)
T cd02982 90 ------LTAESLEEFVEDF 102 (103)
T ss_pred ------cCHHHHHHHHHhh
Confidence 2789999998753
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.55 E-value=5e-14 Score=114.15 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=74.8
Q ss_pred hHHHHHhcCCcEEEEec---CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEE
Q 028334 77 DFFSVVKASDRVVCHFY---RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 77 ~f~~~v~~~~~vvV~fy---~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~ 151 (210)
.|.+.+.++-.+++++. +||++|+.+.|.+++++..|++ +.++.+|.++.+.++.+|+|.++||+++|++|+.+.
T Consensus 12 ~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~ 91 (215)
T TIGR02187 12 LFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGG 91 (215)
T ss_pred HHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeE
Confidence 34444544444555444 6999999999999999999976 456777777999999999999999999999999984
Q ss_pred -EEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 152 -YVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 152 -~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
++.|.. +.+.+..+|..+
T Consensus 92 ~~~~G~~--------~~~~l~~~i~~~ 110 (215)
T TIGR02187 92 IRYTGIP--------AGYEFAALIEDI 110 (215)
T ss_pred EEEeecC--------CHHHHHHHHHHH
Confidence 899987 567787777754
No 67
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.6e-14 Score=127.83 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC-CceeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcCC-
Q 028334 40 LEALRERRLQQMKKMAEKRNRWISLGH-GDYSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHIE- 115 (210)
Q Consensus 40 le~~r~~Rl~el~~~~~~~~~~~~~~~-~~v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~~- 115 (210)
|+.+-..+++---+..-+.+....... +.+..+ .+++|.+.+....+ |+|.|| |||++|+.+.|++++||..|.+
T Consensus 338 ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvv-Vgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 338 IESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVV-VGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred HHHHHHHHhcCccccccccCCCCcccccCCeEEE-eecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 445544444333332222222222223 458888 89999999987766 999999 9999999999999999999875
Q ss_pred --eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEE--EEEEecccCCCCCCCCCHHHHHHHHHHCCC
Q 028334 116 --TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKV--DDYVVGFDELGGTDEFSTEELEERLAKAQV 179 (210)
Q Consensus 116 --v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~--v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~ 179 (210)
+.++++|++.+. ....++.++||+++|+.|.. .-.+.|.+ +.+.|..++.++|.
T Consensus 417 ~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~g~R--------~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 417 ENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYNGDR--------TLEDLKKFIKKSAT 474 (493)
T ss_pred CCcEEEEecccccc--CccccccccceEEEecCCCCCCCcccCCCc--------chHHHHhhhccCCC
Confidence 999999999986 55667788999999987752 34445665 78999999999886
No 68
>PHA02125 thioredoxin-like protein
Probab=99.54 E-value=7.8e-14 Score=94.55 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=59.9
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCH
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFST 167 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~ 167 (210)
++.|| +||++|+.+.|.|+++. +.|+.+|.+..+.++++|+|.++||++ +|+.+.++.|+.. ..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~-------~~ 66 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPR-------NV 66 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCC-------cH
Confidence 78899 99999999999997653 568999999999999999999999987 7999999999752 34
Q ss_pred HHHHHHH
Q 028334 168 EELEERL 174 (210)
Q Consensus 168 ~~L~~~L 174 (210)
.+|+..|
T Consensus 67 ~~l~~~~ 73 (75)
T PHA02125 67 AELKEKL 73 (75)
T ss_pred HHHHHHh
Confidence 5565544
No 69
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.50 E-value=1e-13 Score=101.98 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=64.0
Q ss_pred hHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC-CeEEEEEEcCCCh-hHHHhCCCCC--CcEEEEEE-CCEEE
Q 028334 77 DFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI-ETRFVKIHAEKSP-FLAERLKIVV--LPTLALIK-NAKVD 150 (210)
Q Consensus 77 ~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~-~v~f~~vd~~~~~-~l~~~~~i~~--vPtll~~~-~G~~v 150 (210)
.+..+..++++|+|+|| +||++|+.+.|.+.+....+. ...|+.++++..+ .....|++.+ +||++||. +|+++
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 34445556777999999 999999999999988766542 3567777777664 4567899986 99999995 99999
Q ss_pred EEEeccc
Q 028334 151 DYVVGFD 157 (210)
Q Consensus 151 ~~~~G~~ 157 (210)
.++++..
T Consensus 91 ~~~~~~~ 97 (117)
T cd02959 91 PEIINKK 97 (117)
T ss_pred hhhccCC
Confidence 9877665
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.49 E-value=4.3e-13 Score=108.67 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=70.3
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCC
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFS 166 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~ 166 (210)
+|+.|| +||++|+.+.+.+++++..++.+.|..+|++..+.++.+|+|.++||++++++|.. +.|.. .
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~--------~ 204 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAY--------P 204 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCC--------C
Confidence 555599 99999999999999999998889999999999999999999999999999998864 77877 6
Q ss_pred HHHHHHHHHH
Q 028334 167 TEELEERLAK 176 (210)
Q Consensus 167 ~~~L~~~L~~ 176 (210)
.++|..+|.+
T Consensus 205 ~~~l~~~l~~ 214 (215)
T TIGR02187 205 EEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHh
Confidence 8889888875
No 71
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.49 E-value=3.6e-13 Score=91.58 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=59.4
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFS 166 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~ 166 (210)
.|.|| +||++|+.+.|.+++++++++. +.|+++| ....+..|++.++||+++ +|+++ +.|..+ +
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~-------~ 67 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIP-------S 67 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccC-------C
Confidence 47899 9999999999999999999976 8888887 233477899999999999 99888 777542 4
Q ss_pred HHHHHHHH
Q 028334 167 TEELEERL 174 (210)
Q Consensus 167 ~~~L~~~L 174 (210)
.+.|.++|
T Consensus 68 ~~~l~~~l 75 (76)
T TIGR00412 68 KEEIKEIL 75 (76)
T ss_pred HHHHHHHh
Confidence 57787776
No 72
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.48 E-value=2.8e-13 Score=120.37 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=86.8
Q ss_pred CCceeecCChhhHHHHHhcC-CcEEEEec-CCChhhHHHHHHHHHHHHHcCC----eEEEEEEcCCChhHHHhCCCCCCc
Q 028334 66 HGDYSEIQAEKDFFSVVKAS-DRVVCHFY-RENWPCKVMDKHMSILAKKHIE----TRFVKIHAEKSPFLAERLKIVVLP 139 (210)
Q Consensus 66 ~~~v~~i~t~~~f~~~v~~~-~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~----v~f~~vd~~~~~~l~~~~~i~~vP 139 (210)
.+.+..+ +..+|.+.+... ..++|.|| +||++|+.+.|.+.+++..+.+ +.|+++|++.+. +.. |+|.++|
T Consensus 345 ~~~v~~l-~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P 421 (462)
T TIGR01130 345 EGPVKVL-VGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP 421 (462)
T ss_pred CCccEEe-eCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence 4567788 899999988654 45999999 9999999999999999999864 899999999875 333 9999999
Q ss_pred EEEEEECCEEE--EEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 140 TLALIKNAKVD--DYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 140 tll~~~~G~~v--~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
|+++|++|... ..+.|.. +.+.|.+||.+++-.
T Consensus 422 t~~~~~~~~~~~~~~~~g~~--------~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 422 TIKFVPAGKKSEPVPYDGDR--------TLEDFSKFIAKHATF 456 (462)
T ss_pred EEEEEeCCCCcCceEecCcC--------CHHHHHHHHHhcCCC
Confidence 99999988653 5566755 789999999988744
No 73
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.44 E-value=2.4e-12 Score=95.94 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=84.5
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec--C-CChhhHHHHHHHHHHHHHcC-C-eEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY--R-ENWPCKVMDKHMSILAKKHI-E-TRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy--~-wC~~C~~~~~~l~~la~~~~-~-v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
...+ +..++...+...+..||+|- | -++.+....-+|.+++++|+ . ++|++||++.++.++.+|||.++||++|
T Consensus 19 ~~~~-~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 19 WTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CCcc-ccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 3344 45666666677666676666 3 38999999999999999998 3 8999999999999999999999999999
Q ss_pred EECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 144 IKNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 144 ~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|++|+.+++++|.. +.+.+..+|.+
T Consensus 98 FkdGk~v~~i~G~~--------~k~~l~~~I~~ 122 (132)
T PRK11509 98 FTGGNYRGVLNGIH--------PWAELINLMRG 122 (132)
T ss_pred EECCEEEEEEeCcC--------CHHHHHHHHHH
Confidence 99999999999998 68899999875
No 74
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.44 E-value=1.7e-12 Score=96.32 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=74.7
Q ss_pred ChhhHHHHHhcCCcEEEEec-CCChhhHHHHHH-H--HHHHHHc-CCeEEEEEEcCCChhHHH--------hCCCCCCcE
Q 028334 74 AEKDFFSVVKASDRVVCHFY-RENWPCKVMDKH-M--SILAKKH-IETRFVKIHAEKSPFLAE--------RLKIVVLPT 140 (210)
Q Consensus 74 t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~-l--~~la~~~-~~v~f~~vd~~~~~~l~~--------~~~i~~vPt 140 (210)
+.+.+..+..++++|+|+|| +||++|+.|.+. | .+++... .++.++++|+++.+.+.+ .|++.++||
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 35567778888888999999 999999999873 3 3565553 468999999998877655 368999999
Q ss_pred EEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 141 LALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 141 ll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
++|+ .+|+++.+..++..- +.++...+..+|.
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~---~~~~~~~~~~~~~ 116 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPE---DRYGRPGFKTVLE 116 (124)
T ss_pred EEEECCCCCEEeeeeecCCC---CcCCCcCHHHHHH
Confidence 9999 599999988777532 2334445555544
No 75
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.43 E-value=1.1e-12 Score=86.62 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=54.5
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~ 151 (210)
|+.|| +||++|+.+.+.|++++..++++.|..+|+++.+.++..|++.++||+++ +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 56788 99999999999999999888889999999999999999999999999865 676543
No 76
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.42 E-value=1.2e-12 Score=120.07 Aligned_cols=102 Identities=16% Similarity=0.296 Sum_probs=85.0
Q ss_pred ceeecCChhhHHHHHhc----CCcEEEEec-CCChhhHHHHHHH---HHHHHHcCCeEEEEEEcCCC----hhHHHhCCC
Q 028334 68 DYSEIQAEKDFFSVVKA----SDRVVCHFY-RENWPCKVMDKHM---SILAKKHIETRFVKIHAEKS----PFLAERLKI 135 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~----~~~vvV~fy-~wC~~C~~~~~~l---~~la~~~~~v~f~~vd~~~~----~~l~~~~~i 135 (210)
...++++.+++.+.+.. +++|+|+|| +||++|+.+.+.. .++.+.++++.++++|++.+ ..+.++|++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 35667678888887753 567999999 9999999999875 67888888899999999864 578899999
Q ss_pred CCCcEEEEEE-CCEE--EEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 136 VVLPTLALIK-NAKV--DDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 136 ~~vPtll~~~-~G~~--v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
.++||+++|+ +|++ +.+++|.. +.+.+.++|++.
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~--------~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFM--------DAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCC--------CHHHHHHHHHHh
Confidence 9999999996 8988 47888877 688999998863
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.41 E-value=1.9e-12 Score=95.99 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=63.6
Q ss_pred HHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEc-----------------------CCChhHHHhC
Q 028334 78 FFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHA-----------------------EKSPFLAERL 133 (210)
Q Consensus 78 f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~-----------------------~~~~~l~~~~ 133 (210)
+.....+++++||+|| +||++|+.+.|.|.++++.+ ++.|+.|+. +....++..|
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDL 96 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhc
Confidence 4334445677999999 99999999999999999887 477776664 3344577889
Q ss_pred CCCCCcEEEEE-ECCEEEEEEeccc
Q 028334 134 KIVVLPTLALI-KNAKVDDYVVGFD 157 (210)
Q Consensus 134 ~i~~vPtll~~-~~G~~v~~~~G~~ 157 (210)
++.++|+.+++ ++|+++.++.|..
T Consensus 97 ~v~~~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 97 GVYGVPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred CCCCCCeEEEECCCceEEEEEeccC
Confidence 99999977666 6999999999987
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.39 E-value=9.3e-13 Score=95.40 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=63.1
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHH---HHHcC-CeEEEEEEcCCC--------------------hhHHHhCCCCCC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSIL---AKKHI-ETRFVKIHAEKS--------------------PFLAERLKIVVL 138 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~l---a~~~~-~v~f~~vd~~~~--------------------~~l~~~~~i~~v 138 (210)
+++++|+.|| |||++|+.+.+.+... ...+. ++.++.++++.. ..+...|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 4556999999 9999999999998753 34343 377888887743 347889999999
Q ss_pred cEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 139 PTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 139 Ptll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
||++++. +|+++.++.|.. +.++|..+|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~--------~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYL--------SPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS----------HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCC--------CHHHHHhhC
Confidence 9999995 999999999998 788888776
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.39 E-value=4.9e-12 Score=97.20 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=65.1
Q ss_pred HHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC------------hhHH-HhC---CCCCCcEEEE
Q 028334 81 VVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS------------PFLA-ERL---KIVVLPTLAL 143 (210)
Q Consensus 81 ~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~------------~~l~-~~~---~i~~vPtll~ 143 (210)
.+..++..+|+|| +||++|+...|.|.+++++| ++.++.|+++.. .... ..| ++.++||+++
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 3344555899999 99999999999999999998 466666665532 2222 345 8899999999
Q ss_pred EE-CCEE-EEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 144 IK-NAKV-DDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 144 ~~-~G~~-v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
+. +|.+ +.+..|.. +.+.++..|.+
T Consensus 125 ID~~G~~i~~~~~G~~--------s~~~l~~~I~~ 151 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAV--------DEAELANRMDE 151 (153)
T ss_pred EeCCCCEEEEEeeccc--------CHHHHHHHHHH
Confidence 95 6664 55778877 67888887764
No 80
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.39 E-value=3.5e-12 Score=114.75 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=71.6
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEc----------------------------CCChhHHHh
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHA----------------------------EKSPFLAER 132 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~----------------------------~~~~~l~~~ 132 (210)
++++|||+|| +||++|+.+.|.|.+++++|+ ++.|+.|.. +....+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 6667999999 999999999999999999886 477766543 334567889
Q ss_pred CCCCCCcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 133 LKIVVLPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 133 ~~i~~vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
|+|.++||++++ ++|+++.++.|.. +.+.|..+|+
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~--------~~eeL~a~Ie 170 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSI--------SEAQALALIR 170 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCC--------CHHHHHHHHH
Confidence 999999999777 6999999999988 6889999888
No 81
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.36 E-value=1.1e-11 Score=98.21 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=66.8
Q ss_pred hcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-----------------------hHHHhCCCCCC
Q 028334 83 KASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-----------------------FLAERLKIVVL 138 (210)
Q Consensus 83 ~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-----------------------~l~~~~~i~~v 138 (210)
.++++++|+|| +||++|+...|.|.+++.+ ++.++.|+.+..+ .+...|++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 35677999999 9999999999999999763 6788888765432 23457899999
Q ss_pred cEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 139 PTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 139 Ptll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|+.+++ ++|+++.++.|.. +.+.|+.++..
T Consensus 144 P~t~vid~~G~i~~~~~G~~--------~~~~l~~~i~~ 174 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDL--------NPRVWESEIKP 174 (185)
T ss_pred CeEEEECCCceEEEEEecCC--------CHHHHHHHHHH
Confidence 987777 5999999999977 56777666654
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.35 E-value=1.1e-11 Score=97.09 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=68.2
Q ss_pred hcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC-----------------------CChhHHHhCCCCCC
Q 028334 83 KASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE-----------------------KSPFLAERLKIVVL 138 (210)
Q Consensus 83 ~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~-----------------------~~~~l~~~~~i~~v 138 (210)
.+++.++|+|| +||++|+.+.|.+.++++. ++.++.|+.+ ....+.+.|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 45677999999 9999999999999998764 4666666643 22345678999999
Q ss_pred cEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 139 PTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 139 Ptll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
|+.+++ ++|+++.++.|.. +.+.++.+|.++
T Consensus 139 P~~~~id~~G~i~~~~~G~~--------~~~~l~~~l~~~ 170 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPL--------NNEVWTEGFLPA 170 (173)
T ss_pred CeEEEEcCCceEEEEEeccC--------CHHHHHHHHHHH
Confidence 977777 6999999999987 688888888764
No 83
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.34 E-value=1.5e-11 Score=102.96 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=65.4
Q ss_pred CCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC-----------ChhHHHhCCCCCCcEEEEEEC-CEEEE
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK-----------SPFLAERLKIVVLPTLALIKN-AKVDD 151 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~-----------~~~l~~~~~i~~vPtll~~~~-G~~v~ 151 (210)
++.+||+|| +||++|+.+.|+|..++++|. +.++.|+++. +..+++.|||.++||+++++. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 455999999 999999999999999999995 6666666654 346789999999999999974 55544
Q ss_pred -EEecccCCCCCCCCCHHHHHHHHHH
Q 028334 152 -YVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 152 -~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
...|.. +.+.|...+..
T Consensus 245 ~v~~G~~--------s~~eL~~~i~~ 262 (271)
T TIGR02740 245 PIGFGVM--------SADELVDRILL 262 (271)
T ss_pred EEEeCCC--------CHHHHHHHHHH
Confidence 444766 67777777654
No 84
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.32 E-value=1.8e-11 Score=85.74 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=58.4
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEE
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDY 152 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~ 152 (210)
+.-+..|+ +||++|....+.+.+++..++++.|..+|++..++++.+|+|.++||+++ +|+.+..
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~ 78 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF 78 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe
Confidence 33566688 99999999999999999999999999999999999999999999999964 8987773
No 85
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.31 E-value=3.1e-12 Score=106.04 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=73.1
Q ss_pred hcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC----eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEeccc
Q 028334 83 KASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE----TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFD 157 (210)
Q Consensus 83 ~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~----v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~ 157 (210)
+....++|.|| |||++|+.+.|+|.++.....+ +++.++|++.-+.++..|||+++||+.+|++|..+.. -|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dY-RG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDY-RGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeec-CCCc
Confidence 34445999999 9999999999999999877653 8999999999999999999999999999999987663 3444
Q ss_pred CCCCCCCCCHHHHHHHHHHC
Q 028334 158 ELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 158 ~~g~~~~~~~~~L~~~L~~~ 177 (210)
+++.|..+-.+.
T Consensus 120 --------~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 120 --------EKDAIIEFAHRC 131 (468)
T ss_pred --------cHHHHHHHHHhc
Confidence 578888887764
No 86
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.31 E-value=2.4e-11 Score=94.57 Aligned_cols=96 Identities=24% Similarity=0.250 Sum_probs=77.4
Q ss_pred ChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCC----------------------Chh
Q 028334 74 AEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEK----------------------SPF 128 (210)
Q Consensus 74 t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~----------------------~~~ 128 (210)
+.+.+.-....++.++|.|| +||++|+...+.|.+++++|++ +.++.++.+. ...
T Consensus 50 ~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~ 129 (173)
T PRK03147 50 EGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQ 129 (173)
T ss_pred CCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcch
Confidence 44444333345667999999 9999999999999999999875 8888888753 346
Q ss_pred HHHhCCCCCCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 129 LAERLKIVVLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 129 l~~~~~i~~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+.+.|++..+|+++++. +|+++..+.|.. +.+.+..+|.+.
T Consensus 130 ~~~~~~v~~~P~~~lid~~g~i~~~~~g~~--------~~~~l~~~l~~~ 171 (173)
T PRK03147 130 VIDAYGVGPLPTTFLIDKDGKVVKVITGEM--------TEEQLEEYLEKI 171 (173)
T ss_pred HHHHcCCCCcCeEEEECCCCcEEEEEeCCC--------CHHHHHHHHHHh
Confidence 78899999999999885 999999888877 688898888753
No 87
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.31 E-value=1.3e-11 Score=88.12 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=64.5
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHc--CCeEEEEEEcCCC-----------------------hhHHHhCCCCC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKH--IETRFVKIHAEKS-----------------------PFLAERLKIVV 137 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~--~~v~f~~vd~~~~-----------------------~~l~~~~~i~~ 137 (210)
.++.++|.|| +||++|+...+.|.++..++ +++.|+.|+++.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4667999999 99999999999999999998 5699999999885 67889999999
Q ss_pred CcEEEEEE-CCEEEEEEec
Q 028334 138 LPTLALIK-NAKVDDYVVG 155 (210)
Q Consensus 138 vPtll~~~-~G~~v~~~~G 155 (210)
+|+++++. +|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999995 9999988765
No 88
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.30 E-value=1.3e-11 Score=92.00 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=56.9
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcC----CeEEEEEEcCCC------------------------hhHHHhCC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHI----ETRFVKIHAEKS------------------------PFLAERLK 134 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~----~v~f~~vd~~~~------------------------~~l~~~~~ 134 (210)
.++.++|+|| +||++|+.+.|.+.++++++. ++.++.|+++.. ..+.+.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 5667999999 999999999999999887763 466666666533 34677899
Q ss_pred CCCCcEEEEEE-CCEEEEEE
Q 028334 135 IVVLPTLALIK-NAKVDDYV 153 (210)
Q Consensus 135 i~~vPtll~~~-~G~~v~~~ 153 (210)
+.++||+++|. +|+++.+.
T Consensus 97 v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 97 IEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCCEEEEECCCCCEEccc
Confidence 99999999995 99987654
No 89
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.30 E-value=2.1e-11 Score=92.93 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=56.0
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcC---------CeEEEEEEcCCC-------------------------hh
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHI---------ETRFVKIHAEKS-------------------------PF 128 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~---------~v~f~~vd~~~~-------------------------~~ 128 (210)
+++.|+|+|| +||+||+.+.|.|.++.+++. ++.++.|+.+.. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5677999999 999999999999999776432 377888777642 13
Q ss_pred HHHhCCCCCCcEEEEEE-CCEEEEE
Q 028334 129 LAERLKIVVLPTLALIK-NAKVDDY 152 (210)
Q Consensus 129 l~~~~~i~~vPtll~~~-~G~~v~~ 152 (210)
+.+.|++.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 66789999999999995 9998865
No 90
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.30 E-value=9.4e-12 Score=103.19 Aligned_cols=95 Identities=22% Similarity=0.279 Sum_probs=82.3
Q ss_pred ChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHH----cCC--eEEEEEEcCCChhHHHhCCCCCCcEEEEEEC
Q 028334 74 AEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKK----HIE--TRFVKIHAEKSPFLAERLKIVVLPTLALIKN 146 (210)
Q Consensus 74 t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~----~~~--v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~ 146 (210)
+..++...+.....|+|.|| +||+.++.+.|+|++.|.. ||+ +.+.+||++.+..++.+|.|..+||+-+|++
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 44567777778788999999 9999999999999888766 564 9999999999999999999999999999999
Q ss_pred CEEEE-EEecccCCCCCCCCCHHHHHHHHHH
Q 028334 147 AKVDD-YVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 147 G~~v~-~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|.... .+-|.. +.+.|..++++
T Consensus 82 G~~~~rEYRg~R--------sVeaL~efi~k 104 (375)
T KOG0912|consen 82 GEMMKREYRGQR--------SVEALIEFIEK 104 (375)
T ss_pred cchhhhhhccch--------hHHHHHHHHHH
Confidence 99876 566766 67888888775
No 91
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.28 E-value=3.2e-11 Score=84.81 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=54.0
Q ss_pred CCcEEEEec-CCChhhHHHHHHHHHHHHHcC---CeEEEEEEcCCCh-------------------------hHHHhCCC
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHMSILAKKHI---ETRFVKIHAEKSP-------------------------FLAERLKI 135 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~---~v~f~~vd~~~~~-------------------------~l~~~~~i 135 (210)
++.++|+|| +||++|+...|.|.++.++|+ ++.|+.|..+... .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 356899999 999999999999999999999 4888888887531 36778999
Q ss_pred CCCcEEEEEE-CCEE
Q 028334 136 VVLPTLALIK-NAKV 149 (210)
Q Consensus 136 ~~vPtll~~~-~G~~ 149 (210)
.++|+++++. +|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 9999999996 7864
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.28 E-value=3.5e-11 Score=88.44 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=66.6
Q ss_pred hhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEc---------------------CCChhHHHh
Q 028334 75 EKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHA---------------------EKSPFLAER 132 (210)
Q Consensus 75 ~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~---------------------~~~~~l~~~ 132 (210)
++.+......++.++|+|| +||++|+.+.|.|..+++++. +..+.++- +....+.+.
T Consensus 10 g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (123)
T cd03011 10 GEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISAR 88 (123)
T ss_pred CCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHh
Confidence 3444444556677999999 999999999999999988753 32232222 234568899
Q ss_pred CCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHH
Q 028334 133 LKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEER 173 (210)
Q Consensus 133 ~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~ 173 (210)
|+|.++||++++.+|.++.++.|.. +.+.|...
T Consensus 89 ~~i~~~P~~~vid~~gi~~~~~g~~--------~~~~~~~~ 121 (123)
T cd03011 89 WGVSVTPAIVIVDPGGIVFVTTGVT--------SEWGLRLR 121 (123)
T ss_pred CCCCcccEEEEEcCCCeEEEEeccC--------CHHHHHhh
Confidence 9999999999997444888999988 56666543
No 93
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.27 E-value=2.2e-11 Score=91.14 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=56.5
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcC----CeEEEEEEcCCCh-------------------------hHHHhC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHI----ETRFVKIHAEKSP-------------------------FLAERL 133 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~----~v~f~~vd~~~~~-------------------------~l~~~~ 133 (210)
+++.++|+|| +||++|+.+.|.|.++++++. ++.++.|+++..+ .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5677999999 999999999999999887764 4667666665431 355679
Q ss_pred CCCCCcEEEEEE-CCEEEEEEe
Q 028334 134 KIVVLPTLALIK-NAKVDDYVV 154 (210)
Q Consensus 134 ~i~~vPtll~~~-~G~~v~~~~ 154 (210)
+|.++||++++. +|+++.+..
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 999999999995 898876543
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=6.6e-11 Score=115.20 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=71.1
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEc---C------------------------CChhHHHhC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHA---E------------------------KSPFLAERL 133 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~---~------------------------~~~~l~~~~ 133 (210)
+++.|||+|| +||++|+...|.|++++++|++ +.|+.|.. + ....+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5677999999 9999999999999999999975 67776642 1 123467889
Q ss_pred CCCCCcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 134 KIVVLPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 134 ~i~~vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+|.++||+++| ++|+++.++.|.. ..+.|+.+|...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~--------~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEG--------HRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEeccc--------CHHHHHHHHHHH
Confidence 99999999999 6999999999976 577777777653
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.3e-11 Score=103.45 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=80.6
Q ss_pred CceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 67 GDYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
+....+.....+.......+.++|.|| |||++|+.+.|.+.+++..+.+ +.+..||++.++.++..|+|.++||+.+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f 108 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVF 108 (383)
T ss_pred cchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEE
Confidence 344455223334444556667999999 9999999999999999999888 99999999999999999999999999999
Q ss_pred ECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 145 KNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 145 ~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
..|.....+.|.. +.+.+..++..
T Consensus 109 ~~~~~~~~~~~~~--------~~~~~~~~~~~ 132 (383)
T KOG0191|consen 109 RPGKKPIDYSGPR--------NAESLAEFLIK 132 (383)
T ss_pred cCCCceeeccCcc--------cHHHHHHHHHH
Confidence 9994455555544 56776666654
No 96
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.19 E-value=2.5e-10 Score=89.72 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=63.9
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-------------hhHHHhCCC--CCCcEEEEE-ECCEEE-
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-------------PFLAERLKI--VVLPTLALI-KNAKVD- 150 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-------------~~l~~~~~i--~~vPtll~~-~~G~~v- 150 (210)
+|.|| +||++|+...|.|.+++++| ++.++.|+++.. ..+...|++ .++||.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 67799 99999999999999999998 477777766532 225668885 699999999 699986
Q ss_pred EEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 151 DYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 151 ~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
..+.|.. +.+.|+..+.+.
T Consensus 152 ~~~~G~~--------~~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGAT--------DAAGFMARMDTV 170 (181)
T ss_pred EEEECCC--------CHHHHHHHHHHH
Confidence 5788988 677777776653
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.18 E-value=1.7e-10 Score=85.59 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=60.8
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcC-----C----------------------ChhHHHhC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAE-----K----------------------SPFLAERL 133 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~-----~----------------------~~~l~~~~ 133 (210)
+++.+||+|| +||++|....|.|.++.++|.+ +.++.|... . ...+...|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 5677999999 9999999999999999999974 778777542 1 12356779
Q ss_pred CCCCCcEEEEE-ECCEEEEEEecc
Q 028334 134 KIVVLPTLALI-KNAKVDDYVVGF 156 (210)
Q Consensus 134 ~i~~vPtll~~-~~G~~v~~~~G~ 156 (210)
++.++|+++++ ++|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 599999999884
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.16 E-value=2.6e-10 Score=86.41 Aligned_cols=86 Identities=28% Similarity=0.319 Sum_probs=68.7
Q ss_pred hcCCcEEEEec-C-CChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCC---------------------hhHHHhCCCC-
Q 028334 83 KASDRVVCHFY-R-ENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKS---------------------PFLAERLKIV- 136 (210)
Q Consensus 83 ~~~~~vvV~fy-~-wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~---------------------~~l~~~~~i~- 136 (210)
.+++++||+|| + ||++|+...|.+.++++.|.+ +.|+.|..+.. ..+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 56777999999 9 999999999999999888543 88887776643 2467789988
Q ss_pred --------CCcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 137 --------VLPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 137 --------~vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
++|+++++ ++|+++....|... + +...++..|
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~-~-----~~~~~~~~l 146 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP-D-----EESDLEAVL 146 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT-T-----SHHSHHHHH
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC-C-----CCCChhhcC
Confidence 99999888 59999999999883 1 255666554
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.15 E-value=2.7e-10 Score=82.58 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=52.1
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCC--------------------ChhHHHhCCCCCCcEE
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEK--------------------SPFLAERLKIVVLPTL 141 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~--------------------~~~l~~~~~i~~vPtl 141 (210)
+++++||+|| +||++|+.+.|.++++++.+.+ +.++.+.-+. ...+...|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 4677999999 9999999999999999888754 6666552111 1235567888889999
Q ss_pred EEEE-CCEEEEE
Q 028334 142 ALIK-NAKVDDY 152 (210)
Q Consensus 142 l~~~-~G~~v~~ 152 (210)
+++. +|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 8885 8887654
No 100
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.13 E-value=7.9e-10 Score=80.64 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=70.7
Q ss_pred HHHhcCCcEEEEec-CCChhhHHHHHH-H--HHHHHHcC-CeEEEEEEcCC--ChhHHHhCCCCCCcEEEEEE--CCEEE
Q 028334 80 SVVKASDRVVCHFY-RENWPCKVMDKH-M--SILAKKHI-ETRFVKIHAEK--SPFLAERLKIVVLPTLALIK--NAKVD 150 (210)
Q Consensus 80 ~~v~~~~~vvV~fy-~wC~~C~~~~~~-l--~~la~~~~-~v~f~~vd~~~--~~~l~~~~~i~~vPtll~~~--~G~~v 150 (210)
.+-.+++.++|+|+ +||++|+.|... | ..+.+.+. +..++.+|++. ...++..|++.++|+++++. +|+++
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 33445566999999 999999999864 3 34444443 37788888874 46788999999999999995 79999
Q ss_pred EEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 151 DYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 151 ~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
.++.|.. +++.+...|+++
T Consensus 92 ~~~~G~~--------~~~~f~~~L~~~ 110 (114)
T cd02958 92 KVWSGNI--------TPEDLLSQLIEF 110 (114)
T ss_pred EEEcCCC--------CHHHHHHHHHHH
Confidence 9999988 788888888764
No 101
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.07 E-value=6e-10 Score=100.12 Aligned_cols=100 Identities=17% Similarity=0.275 Sum_probs=85.4
Q ss_pred eecCChhhHHHHHhcCC--cEEEEec-CCChhhHHHHHHH---HHHHHHcCCeEEEEEEcCCC----hhHHHhCCCCCCc
Q 028334 70 SEIQAEKDFFSVVKASD--RVVCHFY-RENWPCKVMDKHM---SILAKKHIETRFVKIHAEKS----PFLAERLKIVVLP 139 (210)
Q Consensus 70 ~~i~t~~~f~~~v~~~~--~vvV~fy-~wC~~C~~~~~~l---~~la~~~~~v~f~~vd~~~~----~~l~~~~~i~~vP 139 (210)
..+++..++.+++.+++ +|+|+|| +||-.|+.+.+.. .+.+.+.++++++++|++++ ..+.++|++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 66745558999998888 8999999 9999999999876 45566678899999999987 3567899999999
Q ss_pred EEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 140 TLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 140 tll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+++||. +|+....+.|+. +.+.+.++|++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~--------~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFL--------TADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCccee--------cHHHHHHHHHHh
Confidence 999997 888777788888 899999999875
No 102
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.5e-09 Score=95.18 Aligned_cols=104 Identities=26% Similarity=0.294 Sum_probs=88.4
Q ss_pred ceeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcC---CeEEEEEEcCCChhHHHhCCCCCCcEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHI---ETRFVKIHAEKSPFLAERLKIVVLPTLA 142 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~---~v~f~~vd~~~~~~l~~~~~i~~vPtll 142 (210)
.+.++ +..+|...+...+. ++|.|| |||++|+.+.|.+.+++..+. .+.+..+|++....++..++|..+||+.
T Consensus 145 ~v~~l-~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 145 EVFEL-TKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ceEEc-cccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 37778 78888887776665 999999 999999999999999999874 3999999999889999999999999999
Q ss_pred EEECCEE-EEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 143 LIKNAKV-DDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 143 ~~~~G~~-v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
+|+.|.. .....|.. +.+.+..|+...---
T Consensus 224 ~f~~~~~~~~~~~~~R--------~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGLR--------DSDSIVSFVEKKERR 254 (383)
T ss_pred EecCCCcccccccccc--------cHHHHHHHHHhhcCC
Confidence 9998877 66666666 788999998875433
No 103
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.4e-10 Score=87.72 Aligned_cols=110 Identities=19% Similarity=0.182 Sum_probs=87.4
Q ss_pred cCCCceeecCChhhHHHHHhcCCc--EEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCC--
Q 028334 64 LGHGDYSEIQAEKDFFSVVKASDR--VVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIV-- 136 (210)
Q Consensus 64 ~~~~~v~~i~t~~~f~~~v~~~~~--vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~-- 136 (210)
.|.+.+.-.++.+.+..++..+.. ++|.|| .|.+.|+.+.|++.+|..+|.. .+|.+||+...+..+.+|+|.
T Consensus 121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccC
Confidence 344556666456666666666655 999999 9999999999999999999875 999999999999999999874
Q ss_pred ----CCcEEEEEECCEEEEEEecccCCCCC--CCCCHHHHHHH
Q 028334 137 ----VLPTLALIKNAKVDDYVVGFDELGGT--DEFSTEELEER 173 (210)
Q Consensus 137 ----~vPtll~~~~G~~v~~~~G~~~~g~~--~~~~~~~L~~~ 173 (210)
.+||+++|.+|+.+.|..-+..-|.. -.|+.+.+...
T Consensus 201 ~~srQLPT~ilFq~gkE~~RrP~vd~~gra~s~~fSeenv~~~ 243 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVSRRPDVDVKGRAVSFPFSEENVCQH 243 (265)
T ss_pred cccccCCeEEEEccchhhhcCccccccCCcccccccHHHHHHH
Confidence 69999999999999998877765532 24455554433
No 104
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.97 E-value=2.1e-09 Score=80.12 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=53.3
Q ss_pred HHHHHhcCCcEEEEec-CCChhhHHHHHHH---HHHHHHcC-CeEEEEEEcCCChhHHHhCCCCCCcEEEEE-ECCEEEE
Q 028334 78 FFSVVKASDRVVCHFY-RENWPCKVMDKHM---SILAKKHI-ETRFVKIHAEKSPFLAERLKIVVLPTLALI-KNAKVDD 151 (210)
Q Consensus 78 f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l---~~la~~~~-~v~f~~vd~~~~~~l~~~~~i~~vPtll~~-~~G~~v~ 151 (210)
+..+-.++++|+|+|+ +||++|+.|...+ .++.+... ++..+.++++....-....+ .++||++|+ .+|+++.
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence 3444456677999999 9999999999864 23333222 34555666552211111244 589999999 5999999
Q ss_pred EEeccc
Q 028334 152 YVVGFD 157 (210)
Q Consensus 152 ~~~G~~ 157 (210)
++.|..
T Consensus 95 ~i~Gy~ 100 (130)
T cd02960 95 DITGRY 100 (130)
T ss_pred cccccc
Confidence 999876
No 105
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.96 E-value=6.7e-09 Score=77.62 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=49.3
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhC---CCCCCcEEEEEE-CCEEEEEEecc
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERL---KIVVLPTLALIK-NAKVDDYVVGF 156 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~---~i~~vPtll~~~-~G~~v~~~~G~ 156 (210)
-++.|. +|||.|+...|.|.+++...|++.+-.+..+.++.+..+| |..++||++|+. +|+.++++...
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC
Confidence 555577 9999999999999999999888777767777776666554 688999999995 78999988654
No 106
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.95 E-value=7e-09 Score=82.41 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=62.0
Q ss_pred hcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC--------------------CChhHHHhCCCCCCcEE
Q 028334 83 KASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE--------------------KSPFLAERLKIVVLPTL 141 (210)
Q Consensus 83 ~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~--------------------~~~~l~~~~~i~~vPtl 141 (210)
..+++++|+|| +||++|+...|.+.++.+++ ++.++.+..+ ....+.+.|++..+|+.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 35667999999 99999999999999998765 3444444321 12356788999999998
Q ss_pred EEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 142 ALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 142 l~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
+++ ++|+++.+ |... ..+.++.+|..
T Consensus 151 ~lID~~G~I~~~--g~~~-------~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKIRAK--GLTN-------TREHLESLLEA 177 (189)
T ss_pred EEECCCCeEEEc--cCCC-------CHHHHHHHHHH
Confidence 888 59988875 3221 56788888875
No 107
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.93 E-value=8.9e-09 Score=68.17 Aligned_cols=68 Identities=26% Similarity=0.370 Sum_probs=52.4
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh----HHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF----LAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTD 163 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~----l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~ 163 (210)
+..|| +||++|+.+.+.|.+ .++.|..+|++..+. +.+.+++.++|++++. |+. +.|..
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~------ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFD------ 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCC------
Confidence 45688 999999999988865 358889999987754 4567999999999874 654 55644
Q ss_pred CCCHHHHHHHHH
Q 028334 164 EFSTEELEERLA 175 (210)
Q Consensus 164 ~~~~~~L~~~L~ 175 (210)
++.|.++|+
T Consensus 66 ---~~~i~~~i~ 74 (74)
T TIGR02196 66 ---PEKLDQLLE 74 (74)
T ss_pred ---HHHHHHHhC
Confidence 788888763
No 108
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.91 E-value=7.9e-09 Score=81.57 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=64.5
Q ss_pred hHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEE------EEEEcCC------------------------
Q 028334 77 DFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRF------VKIHAEK------------------------ 125 (210)
Q Consensus 77 ~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f------~~vd~~~------------------------ 125 (210)
.+...-..++..||.|| +||++|+...|.+..++.+ ++.+ +-||.+.
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence 34444455777999999 9999999999999999764 1223 3444442
Q ss_pred -----ChhHHHhCCCCCCcEE-EEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 126 -----SPFLAERLKIVVLPTL-ALI-KNAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 126 -----~~~l~~~~~i~~vPtl-l~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
...+...|++.++|+. +++ ++|+++.++.|.. +.+.++.++
T Consensus 129 vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l--------~~ee~e~~~ 176 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGAL--------SDSDIQTVI 176 (184)
T ss_pred EEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCC--------CHHHHHHHH
Confidence 2235568999999877 677 6999999999987 566666544
No 109
>smart00594 UAS UAS domain.
Probab=98.90 E-value=2.9e-08 Score=73.40 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=65.8
Q ss_pred ChhhH-HHHHhcCCcEEEEec-CCChhhHHHHHHH---HHHHHHcC-CeEEEEEEcCCC--hhHHHhCCCCCCcEEEEEE
Q 028334 74 AEKDF-FSVVKASDRVVCHFY-RENWPCKVMDKHM---SILAKKHI-ETRFVKIHAEKS--PFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 74 t~~~f-~~~v~~~~~vvV~fy-~wC~~C~~~~~~l---~~la~~~~-~v~f~~vd~~~~--~~l~~~~~i~~vPtll~~~ 145 (210)
+-++. ..+..+++.++|+|+ +||++|+.+...+ ..+.+... ++.+..+|++.. ..++..|++.++|+++++.
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 43333 333345556999999 9999999998753 33333333 377777887754 6789999999999999994
Q ss_pred -CC-----EEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 146 -NA-----KVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 146 -~G-----~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
+| .++.++.|.. +++.|...|
T Consensus 95 ~~~g~~~~~~~~~~~G~~--------~~~~l~~~l 121 (122)
T smart00594 95 PRTGQRVIEWVGVVEGEI--------SPEELMTFL 121 (122)
T ss_pred cCCCceeEEEeccccCCC--------CHHHHHHhh
Confidence 55 3566666766 678877765
No 110
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.89 E-value=1.2e-08 Score=83.76 Aligned_cols=85 Identities=19% Similarity=0.069 Sum_probs=64.2
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCC-------C----hhHH-HhCC--------------
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEK-------S----PFLA-ERLK-------------- 134 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~-------~----~~l~-~~~~-------------- 134 (210)
.++.+||.|| +||++|+...|.|.++.++|.+ +.++.|+++. . ..++ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 5677999999 9999999999999999999874 8888888631 1 1111 1111
Q ss_pred --------------------CCCCcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 135 --------------------IVVLPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 135 --------------------i~~vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
+...||.+++ ++|+++.++.|.. +.+.|+..|++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~--------~~~~le~~I~~ 232 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT--------SPFQIEKDIQK 232 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC--------CHHHHHHHHHH
Confidence 2335888888 6999999999877 67788887765
No 111
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.6e-09 Score=96.76 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=69.8
Q ss_pred CceeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcC---C-eEEEEEEcC--CChhHHHhCCCCCC
Q 028334 67 GDYSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHI---E-TRFVKIHAE--KSPFLAERLKIVVL 138 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~---~-v~f~~vd~~--~~~~l~~~~~i~~v 138 (210)
..++++ +...|..+|..+.. .+|.|| +|||.|+.+.|+++++|+... . +.++.||+. .+..+++.|+|+.+
T Consensus 39 D~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 468888 99999999988874 999999 999999999999999998843 3 788888876 45789999999999
Q ss_pred cEEEEEECC
Q 028334 139 PTLALIKNA 147 (210)
Q Consensus 139 Ptll~~~~G 147 (210)
||+.+|..+
T Consensus 118 Ptlryf~~~ 126 (606)
T KOG1731|consen 118 PTLRYFPPD 126 (606)
T ss_pred ceeeecCCc
Confidence 999999643
No 112
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.87 E-value=1.2e-08 Score=81.68 Aligned_cols=40 Identities=8% Similarity=-0.077 Sum_probs=35.7
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEc
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHA 123 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~ 123 (210)
.++.|||.|| +||++|+...|.|.++.++|.+ +.++.|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 5677999999 9999999999999999999864 88888875
No 113
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.86 E-value=5.8e-09 Score=73.74 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=63.4
Q ss_pred CCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcC-CChhHHHhCC--CCCCcEEEEEECCEEEEEEec
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAE-KSPFLAERLK--IVVLPTLALIKNAKVDDYVVG 155 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~-~~~~l~~~~~--i~~vPtll~~~~G~~v~~~~G 155 (210)
...++++|| +||++|+.+.|.+.++++.++. +.|+.+++. ..+.+...|+ +..+|+++++.+|..+....|
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 556899999 9999999999999999999985 999999997 7888999999 999999999998877666655
No 114
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.82 E-value=9.7e-08 Score=74.36 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=58.0
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC-----------------------------hhHHH
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS-----------------------------PFLAE 131 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~-----------------------------~~l~~ 131 (210)
+++.+||+|| +||+.|....+.|.++..+|+ ++.|+.|..+.. ..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5667999999 999999999999999999997 488888877531 13566
Q ss_pred hCCCCCCcEEEEE-ECCEEEEEE
Q 028334 132 RLKIVVLPTLALI-KNAKVDDYV 153 (210)
Q Consensus 132 ~~~i~~vPtll~~-~~G~~v~~~ 153 (210)
.|++..+|+++++ ++|+++.+.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEee
Confidence 8999999999999 499988653
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.81 E-value=1.6e-08 Score=77.38 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCC--------C---hhHHHh-C---------------
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEK--------S---PFLAER-L--------------- 133 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~--------~---~~l~~~-~--------------- 133 (210)
.++.|||.|| +||+ |+...|.|.+++++|.+ +.|+.|.++. . ..+++. +
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 4677999999 9999 99999999999999864 8888886531 1 122221 1
Q ss_pred ------C--CCCCc-----------EEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHH
Q 028334 134 ------K--IVVLP-----------TLALI-KNAKVDDYVVGFDELGGTDEFSTEELEE 172 (210)
Q Consensus 134 ------~--i~~vP-----------tll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~ 172 (210)
+ +.++| |.+++ ++|+++.++.|.. +.+.|+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~--------~~~~l~~ 150 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTT--------DPEELEK 150 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCC--------CHHHHHh
Confidence 1 23466 56777 6999999999977 5666654
No 116
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.80 E-value=1.3e-08 Score=69.82 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred hhHHHHHhcCCcEEEEec-CCChhhHHHHHHH---HHHHHHc-CCeEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 76 KDFFSVVKASDRVVCHFY-RENWPCKVMDKHM---SILAKKH-IETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 76 ~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l---~~la~~~-~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
+.+..+..++++++|+|+ +||++|+.+...+ ..+.+.+ .++.++++|.+.........+ .++|+++|+.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 345556677888999999 9999999999877 4444422 358999999987654332222 6699999985
No 117
>PLN02412 probable glutathione peroxidase
Probab=98.80 E-value=4.1e-08 Score=76.49 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=63.3
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCC-------C-hh----HHHh----CC----------
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEK-------S-PF----LAER----LK---------- 134 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~-------~-~~----l~~~----~~---------- 134 (210)
.++.+||.|| +||++|+...|.|.++.++|.+ +.++-|.++. . .. +.+. |.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 4577999999 9999999999999999999874 8888887531 1 11 1111 11
Q ss_pred --------------------CCCCcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 135 --------------------IVVLPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 135 --------------------i~~vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
+...|+.+++ ++|+++.++.|.. +.+.|+..|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~--------~~~~l~~~i~~ 162 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT--------SPLKIEKDIQN 162 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC--------CHHHHHHHHHH
Confidence 4446898888 6999999999877 56777776654
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.74 E-value=5e-08 Score=65.46 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=43.3
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHh-----CCCCCCcEEEEEECCEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAER-----LKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~-----~~i~~vPtll~~~~G~~v~ 151 (210)
++.|| +||++|+.+.+.|.++ ++.|-.+|++..+..... +++.++|++ ++.+|..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec
Confidence 45688 9999999999988765 345667888877655544 489999997 578886544
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.73 E-value=6.4e-08 Score=60.83 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=50.3
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHH---hCCCCCCcEEEEEECC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAE---RLKIVVLPTLALIKNA 147 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~---~~~i~~vPtll~~~~G 147 (210)
++.|| +||++|+.+.+.+.++....+++.++.++++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46789 99999999999999984445569999999998865544 8999999999999877
No 120
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.73 E-value=8.3e-08 Score=71.85 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=60.3
Q ss_pred cCCcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC---------------------hhHHHhCCCCCC
Q 028334 84 ASDRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS---------------------PFLAERLKIVVL 138 (210)
Q Consensus 84 ~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~---------------------~~l~~~~~i~~v 138 (210)
.++.++|.|| .||+.|....+.|.++..++. ++.++.|..+.. ..+.+.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4667888888 689999999999999988875 477877766532 246678999888
Q ss_pred ---------cEEEEEE-CCEEEEEEeccc
Q 028334 139 ---------PTLALIK-NAKVDDYVVGFD 157 (210)
Q Consensus 139 ---------Ptll~~~-~G~~v~~~~G~~ 157 (210)
|+++++. +|+++..+.|..
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCC
Confidence 8999995 899999999988
No 121
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.71 E-value=1.1e-07 Score=72.79 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=61.9
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcC--------CC---hhHHH------------------
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAE--------KS---PFLAE------------------ 131 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~--------~~---~~l~~------------------ 131 (210)
+++.+||.|| +||++|+...|.|.++.++|.+ +.|+.|++. .. ..+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 5667899999 9999999999999999999864 888888741 11 11121
Q ss_pred ------hCCC---CCCcE----EEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 132 ------RLKI---VVLPT----LALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 132 ------~~~i---~~vPt----ll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
.|.+ .++|+ .+++ ++|+++.++.|.. +.+.|+..|++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~--------~~~~l~~~i~~ 151 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE--------PVEEIRPEITA 151 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCC--------CHHHHHHHHHH
Confidence 1111 24785 5555 7999999999877 67778777754
No 122
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.68 E-value=3.3e-07 Score=71.38 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=60.2
Q ss_pred cCCcEEEEec-CC-ChhhHHHHHHHHHHHHHcCCeEEEEEEcCC-----------------------ChhHHHhCCCCCC
Q 028334 84 ASDRVVCHFY-RE-NWPCKVMDKHMSILAKKHIETRFVKIHAEK-----------------------SPFLAERLKIVVL 138 (210)
Q Consensus 84 ~~~~vvV~fy-~w-C~~C~~~~~~l~~la~~~~~v~f~~vd~~~-----------------------~~~l~~~~~i~~v 138 (210)
.++.+||+|| +| |++|....|.|.+++.++.++.++.|..+. ...+++.||+...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 4667999999 99 999999999999999998778888777653 1246778998877
Q ss_pred c---------EEEEE-ECCEEEEEEeccc
Q 028334 139 P---------TLALI-KNAKVDDYVVGFD 157 (210)
Q Consensus 139 P---------tll~~-~~G~~v~~~~G~~ 157 (210)
| +.+++ ++|+++...++..
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~~~~ 151 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSELVPE 151 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEECCC
Confidence 7 88888 5999999987654
No 123
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.67 E-value=1.9e-07 Score=70.37 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=60.6
Q ss_pred cCCcEEEEec-CC-ChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-----------------------hhHHHhCCCCC-
Q 028334 84 ASDRVVCHFY-RE-NWPCKVMDKHMSILAKKHIETRFVKIHAEKS-----------------------PFLAERLKIVV- 137 (210)
Q Consensus 84 ~~~~vvV~fy-~w-C~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-----------------------~~l~~~~~i~~- 137 (210)
.++.+||+|| .| |++|+...|.|.++.++|+++.|+.|+++.. ..+.+.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4667999999 88 7999999999999999998888888887521 24566788753
Q ss_pred -----CcEEEEEE-CCEEEEEEeccc
Q 028334 138 -----LPTLALIK-NAKVDDYVVGFD 157 (210)
Q Consensus 138 -----vPtll~~~-~G~~v~~~~G~~ 157 (210)
.|+.+++. +|+++....|..
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCC
Confidence 68988885 999999999875
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.67 E-value=2.7e-07 Score=74.82 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=61.1
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC-----------CChhHHHhCCCCCCcEEEEEE-CC-EEEEEE
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE-----------KSPFLAERLKIVVLPTLALIK-NA-KVDDYV 153 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~-----------~~~~l~~~~~i~~vPtll~~~-~G-~~v~~~ 153 (210)
-+++|| +.|++|+.+.|++..++++| ++.++.|+++ .++.++++|||..+|+++++. ++ +..--.
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 788899 99999999999999999999 6666666665 346789999999999999996 44 344444
Q ss_pred ecccCCCCCCCCCHHHHHHHH
Q 028334 154 VGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 154 ~G~~~~g~~~~~~~~~L~~~L 174 (210)
.|+. +.+.|...|
T Consensus 202 ~G~~--------s~~~L~~ri 214 (215)
T PF13728_consen 202 QGFM--------SLDELEDRI 214 (215)
T ss_pred eecC--------CHHHHHHhh
Confidence 4666 677776543
No 125
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.7e-08 Score=79.62 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=78.3
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECC
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNA 147 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G 147 (210)
+..+....+| ...+...++++|| +||.+|..+..++..++...+++.|++++++..++++..+.+.++|++.++..|
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence 5566567777 3335555999999 999999999999999999888899999999999999999999999999999999
Q ss_pred EEEEEEecccC
Q 028334 148 KVDDYVVGFDE 158 (210)
Q Consensus 148 ~~v~~~~G~~~ 158 (210)
+.+.++.|..+
T Consensus 81 ~~v~~l~~~~~ 91 (227)
T KOG0911|consen 81 EKVDRLSGADP 91 (227)
T ss_pred hhhhhhhccCc
Confidence 99999999883
No 126
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.3e-07 Score=66.90 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=72.7
Q ss_pred eeecCChhhHHHHHhcCCc--EEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 69 YSEIQAEKDFFSVVKASDR--VVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~--vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
+.+++|.+...+++..... |||.|+ .|-+.|..|...|.+++....+ +.++-+|+++.+.+.+-|++...||+.||
T Consensus 5 Lp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfF 84 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFF 84 (142)
T ss_pred ccccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEE
Confidence 5567788999999876554 899999 9999999999999999999887 88899999999999999999999999998
Q ss_pred ECCEEEE
Q 028334 145 KNAKVDD 151 (210)
Q Consensus 145 ~~G~~v~ 151 (210)
-+++=+.
T Consensus 85 fn~kHmk 91 (142)
T KOG3414|consen 85 FNNKHMK 91 (142)
T ss_pred EcCceEE
Confidence 7665443
No 127
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.59 E-value=3.1e-07 Score=67.15 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=57.8
Q ss_pred cCCcEEEEec-C-CChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC---------------------hhHHHhCCCC--
Q 028334 84 ASDRVVCHFY-R-ENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS---------------------PFLAERLKIV-- 136 (210)
Q Consensus 84 ~~~~vvV~fy-~-wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~---------------------~~l~~~~~i~-- 136 (210)
.++++||.|| + ||++|....+.|.++..+|+ ++.|+.|..+.. ..+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 5677999999 7 99999999999999999877 589988887642 3467889998
Q ss_pred ----CCcEEEEEE-CCEEEEE
Q 028334 137 ----VLPTLALIK-NAKVDDY 152 (210)
Q Consensus 137 ----~vPtll~~~-~G~~v~~ 152 (210)
.+|+++++. +|+++.+
T Consensus 104 ~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TTSEESEEEEEEETTSBEEEE
T ss_pred cCCceEeEEEEECCCCEEEeC
Confidence 999999995 8887753
No 128
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.59 E-value=5.3e-07 Score=62.20 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=48.1
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh----hHHHhCC--CCCCcEEEEEECCEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP----FLAERLK--IVVLPTLALIKNAKVDD 151 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~----~l~~~~~--i~~vPtll~~~~G~~v~ 151 (210)
|+.|+ +||++|+...+.|+++..++.++.+..+|++..+ .+...++ ...+|+++ .+|+.++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG 70 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc
Confidence 56688 9999999999999999988778999999998753 4554444 48999965 5887643
No 129
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.58 E-value=8.3e-07 Score=60.06 Aligned_cols=72 Identities=25% Similarity=0.264 Sum_probs=55.0
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHH
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEE 169 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~ 169 (210)
.++ ++|++|..+...+++++..+. +.+--+++...+.+ .+|||.++||+++ ||+++ +.|..+ +.+.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p-------~~~e 70 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVP-------SKEE 70 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS---------HHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCC-------CHHH
Confidence 346 889999999999999999984 77777777555666 9999999999844 88754 567332 6788
Q ss_pred HHHHHH
Q 028334 170 LEERLA 175 (210)
Q Consensus 170 L~~~L~ 175 (210)
|+.+|+
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888874
No 130
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.55 E-value=9.3e-07 Score=66.61 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCc-EEEEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC---------------------hhHHHhCCCC---
Q 028334 85 SDR-VVCHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS---------------------PFLAERLKIV--- 136 (210)
Q Consensus 85 ~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~---------------------~~l~~~~~i~--- 136 (210)
+++ +|++|+ +||++|+...|.|.++..++. ++.++.|..+.. ..+.+.|++.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~ 102 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSL 102 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecC
Confidence 344 566567 999999999999999999884 588888877643 2355677873
Q ss_pred --------------------------CCcEEEEEE-CCEEEEEEec
Q 028334 137 --------------------------VLPTLALIK-NAKVDDYVVG 155 (210)
Q Consensus 137 --------------------------~vPtll~~~-~G~~v~~~~G 155 (210)
.+|+.+++. +|.++..++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 103 PWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 788888884 7888877765
No 131
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.54 E-value=1.5e-06 Score=64.20 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred eeecCChhhHHHHHhcCCc--EEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCc-EEEE
Q 028334 69 YSEIQAEKDFFSVVKASDR--VVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLP-TLAL 143 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~--vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vP-tll~ 143 (210)
+.+++++.+..+++..... |||.|+ +|-+.|..+..+|.+++.+..+ +.++-+|+++.|.+.+.|.+. .| |++|
T Consensus 2 L~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmF 80 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMF 80 (133)
T ss_dssp SEEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEE
T ss_pred CcccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEE
Confidence 4567789999999865544 889999 9999999999999999999887 899999999999999999998 78 5666
Q ss_pred EECCEEEEEEeccc
Q 028334 144 IKNAKVDDYVVGFD 157 (210)
Q Consensus 144 ~~~G~~v~~~~G~~ 157 (210)
|-+|+-+.-=.|..
T Consensus 81 F~rnkhm~vD~Gtg 94 (133)
T PF02966_consen 81 FFRNKHMMVDFGTG 94 (133)
T ss_dssp EETTEEEEEESSSS
T ss_pred EecCeEEEEEecCC
Confidence 66777554334443
No 132
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.54 E-value=2.5e-07 Score=70.63 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=55.5
Q ss_pred hhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHc----CC--eEEEEEEcCCC----------------------
Q 028334 76 KDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKH----IE--TRFVKIHAEKS---------------------- 126 (210)
Q Consensus 76 ~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~----~~--v~f~~vd~~~~---------------------- 126 (210)
......-..++.|.++|. .||+||+.+.|+|.++..+. +. +.|+.-|-+..
T Consensus 24 ~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~ 103 (157)
T KOG2501|consen 24 EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDL 103 (157)
T ss_pred cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHH
Confidence 334444556677899999 99999999999998776653 23 45555444421
Q ss_pred -hhHHHhCCCCCCcEEEEEE-CCEEEEE
Q 028334 127 -PFLAERLKIVVLPTLALIK-NAKVDDY 152 (210)
Q Consensus 127 -~~l~~~~~i~~vPtll~~~-~G~~v~~ 152 (210)
..+...|.|.++|++.+.+ +|..+..
T Consensus 104 ~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 104 IQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred HHHHHHhcccCcCceeEEecCCCCEehH
Confidence 2467789999999999985 8977653
No 133
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.52 E-value=8.3e-07 Score=67.82 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=58.3
Q ss_pred hcCCcEEEEec-C-CChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC---------------------ChhHHHhCCCCC
Q 028334 83 KASDRVVCHFY-R-ENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK---------------------SPFLAERLKIVV 137 (210)
Q Consensus 83 ~~~~~vvV~fy-~-wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~---------------------~~~l~~~~~i~~ 137 (210)
.+++.+||+|| . ||+.|....+.|.++.+++. ++.|+.|..+. ...+.+.|++..
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 35677999999 6 68889999999999988875 48888877753 224667888765
Q ss_pred C------------cEEEEE-ECCEEEEEEeccc
Q 028334 138 L------------PTLALI-KNAKVDDYVVGFD 157 (210)
Q Consensus 138 v------------Ptll~~-~~G~~v~~~~G~~ 157 (210)
. |+.+++ ++|+++..+.|..
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence 4 677777 5999999999976
No 134
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.51 E-value=4.2e-07 Score=62.00 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=44.7
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCCh-----hHHHhCCCCCCcEEEEEECCEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSP-----FLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~-----~l~~~~~i~~vPtll~~~~G~~v 150 (210)
|+.|+ +||++|+.+.+.|.++. .+. +.++.++.+... .+.+.+++..+|++ |-+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 46688 99999999999999986 332 778888877553 36677899999997 4577654
No 135
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.51 E-value=1.3e-06 Score=68.17 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=69.0
Q ss_pred cCCcEEEEec--CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCC----------------------------hhHHH
Q 028334 84 ASDRVVCHFY--RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKS----------------------------PFLAE 131 (210)
Q Consensus 84 ~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~----------------------------~~l~~ 131 (210)
.++.+||.|| .||++|....+.|.+++++|.+ +.++.|..+.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4567888898 8999999999999999999853 66666665421 23556
Q ss_pred hCCCC------CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 132 RLKIV------VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 132 ~~~i~------~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
.|++. .+|+.+++. +|+++..+.+..+.+. ..+.+...|+....+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~----~~~~il~~l~~~~~~ 159 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGR----SVDETLRVLDALQFV 159 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCC----CHHHHHHHHHHhhhh
Confidence 78886 678999995 9999999987765432 466777777665443
No 136
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.5e-06 Score=65.96 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=63.9
Q ss_pred HHhcCCcEEEEec-CCChhhHHHHHHHH---HHHHHcC-CeEEEEEEcCC----------------ChhHHHhCCCCCCc
Q 028334 81 VVKASDRVVCHFY-RENWPCKVMDKHMS---ILAKKHI-ETRFVKIHAEK----------------SPFLAERLKIVVLP 139 (210)
Q Consensus 81 ~v~~~~~vvV~fy-~wC~~C~~~~~~l~---~la~~~~-~v~f~~vd~~~----------------~~~l~~~~~i~~vP 139 (210)
+..+++..++.|. +.|++|..+...+. ++..-+. ++.++++++.. ..++++.|++++.|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 3334445888999 99999999998763 3333232 37777777652 14799999999999
Q ss_pred EEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 140 TLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 140 tll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
|++||+ .|+.+..+.|.. +++.+...|+
T Consensus 118 tfvFfdk~Gk~Il~lPGY~--------ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTILELPGYM--------PPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEEecCCCC--------CHHHHHHHHH
Confidence 999994 999999999988 4665554443
No 137
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.46 E-value=1.5e-06 Score=63.90 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=58.1
Q ss_pred ChhhHHHHHhc----CCcEEEEec--------CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCCh-------hHHH--
Q 028334 74 AEKDFFSVVKA----SDRVVCHFY--------RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSP-------FLAE-- 131 (210)
Q Consensus 74 t~~~f~~~v~~----~~~vvV~fy--------~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~-------~l~~-- 131 (210)
.-++|.+.+.. +++++|.|+ +|||.|+...|++.+.....+. ..|+.+.+...+ .+..
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 34566666643 344777775 4999999999999998777664 999999886432 2333
Q ss_pred hCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 132 RLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 132 ~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
.+++++|||++-+..| .++++.. -...+.|+.++.
T Consensus 84 ~~~l~~IPTLi~~~~~---~rL~e~e------~~~~~lv~~~~e 118 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG---ERLVEEE------CLNEDLVEMFFE 118 (119)
T ss_dssp CC---SSSEEEECTSS----EEEHHH------HH-HHHHHHHHH
T ss_pred eeeeeecceEEEECCC---Cccchhh------hccHHHHHHHhc
Confidence 5999999999999877 4555543 113455555543
No 138
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.45 E-value=1.5e-06 Score=67.11 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=57.4
Q ss_pred hhhHHHHHhcCCcEEEEec-CCChhhHHHHH-HH--HHHHHHcCC-eEEEEEEcCCChhHHHhC--------CCCCCcEE
Q 028334 75 EKDFFSVVKASDRVVCHFY-RENWPCKVMDK-HM--SILAKKHIE-TRFVKIHAEKSPFLAERL--------KIVVLPTL 141 (210)
Q Consensus 75 ~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~-~l--~~la~~~~~-v~f~~vd~~~~~~l~~~~--------~i~~vPtl 141 (210)
.+.|..+-.++++++|+++ +||..|+.|.. .| .+++..+.. +.-++||.++.|++...| |..+.|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 4667778888888999999 99999999985 33 344444432 777889999999998887 88999999
Q ss_pred EEEE-CCEEEEEEecccC
Q 028334 142 ALIK-NAKVDDYVVGFDE 158 (210)
Q Consensus 142 l~~~-~G~~v~~~~G~~~ 158 (210)
+|+- +|+++...+.+.+
T Consensus 107 vfltPdg~p~~~~tY~P~ 124 (163)
T PF03190_consen 107 VFLTPDGKPFFGGTYFPP 124 (163)
T ss_dssp EEE-TTS-EEEEESS--S
T ss_pred EEECCCCCeeeeeeecCC
Confidence 9995 9999987666653
No 139
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.40 E-value=3.6e-06 Score=66.76 Aligned_cols=93 Identities=12% Similarity=0.174 Sum_probs=69.0
Q ss_pred cCCcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC-------------------------ChhHHHhCC
Q 028334 84 ASDRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK-------------------------SPFLAERLK 134 (210)
Q Consensus 84 ~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~-------------------------~~~l~~~~~ 134 (210)
.++.+||+|| .||++|....+.|.++..+|. ++.++.|.++. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4667999999 899999999999999988875 46666666542 224667888
Q ss_pred CC------CCcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 135 IV------VLPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 135 i~------~vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
+. ..|+.+++ ++|+++....+....+ ...+.+.+.|.....+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~----~~~~~ll~~l~~~~~~ 158 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIG----RDASELLRKIKAAQYV 158 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHHHhhhH
Confidence 86 46988888 5999999887654332 1577777777766655
No 140
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.39 E-value=2.1e-06 Score=61.76 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=73.5
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec--CC-ChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY--RE-NWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy--~w-C~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
....+ +..++...+......+++|. |. ++.|....=++-+|.+.+++ +..+-+.......+..+||+...|+++|
T Consensus 10 g~~~v-d~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRV-DADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE--CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeee-chhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 36677 77888888888777777777 33 77888888899999999998 6777777677788999999999999999
Q ss_pred EECCEEEEEEeccc
Q 028334 144 IKNAKVDDYVVGFD 157 (210)
Q Consensus 144 ~~~G~~v~~~~G~~ 157 (210)
|++|+.++.+.|..
T Consensus 89 ~R~g~~lG~i~gi~ 102 (107)
T PF07449_consen 89 FRDGRYLGAIEGIR 102 (107)
T ss_dssp EETTEEEEEEESSS
T ss_pred EECCEEEEEecCee
Confidence 99999999999986
No 141
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.38 E-value=3.4e-06 Score=58.45 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=55.6
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh----hHHHhCCC--CCCcEEEEEECCEEEEEEecccCCCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP----FLAERLKI--VVLPTLALIKNAKVDDYVVGFDELGG 161 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~----~l~~~~~i--~~vPtll~~~~G~~v~~~~G~~~~g~ 161 (210)
|+.|. +||++|..+...|.++..+++++.|..+|++... .+...++- ..+|+++ -+|+.+ |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i----g------ 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV----G------ 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe----c------
Confidence 56677 9999999999999999887777888888887532 45666664 7999984 477543 2
Q ss_pred CCCCCHHHHHHHHHHCCC
Q 028334 162 TDEFSTEELEERLAKAQV 179 (210)
Q Consensus 162 ~~~~~~~~L~~~L~~~~~ 179 (210)
..+.|.+++.++--
T Consensus 70 ----G~~dl~~~~~~~~~ 83 (86)
T TIGR02183 70 ----GCTDFEQLVKENFD 83 (86)
T ss_pred ----CHHHHHHHHHhccc
Confidence 24777888776543
No 142
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.38 E-value=3e-06 Score=55.69 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=46.1
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHh----CCCCCCcEEEEEECCEEEEEEecccCCCCCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAER----LKIVVLPTLALIKNAKVDDYVVGFDELGGTD 163 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~----~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~ 163 (210)
++.|+ +||++|..+...|.+. ++.|..++++..+..... .++..+|++++ +|+ .+.|..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~------ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFR------ 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCC------
Confidence 45678 9999999988887652 567777888766544433 37899999875 553 344543
Q ss_pred CCCHHHHHHHH
Q 028334 164 EFSTEELEERL 174 (210)
Q Consensus 164 ~~~~~~L~~~L 174 (210)
...|.++|
T Consensus 66 ---~~~l~~~~ 73 (73)
T cd02976 66 ---PDKLRALL 73 (73)
T ss_pred ---HHHHHhhC
Confidence 66776654
No 143
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.37 E-value=4.5e-06 Score=69.21 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=59.7
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-----------hhHHHhCCCCCCcEEEEEE-C-CEEEEEE
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-----------PFLAERLKIVVLPTLALIK-N-AKVDDYV 153 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-----------~~l~~~~~i~~vPtll~~~-~-G~~v~~~ 153 (210)
-+++|| +.|++|+.+.|++..++.+|. +.++.|.++.. ...++++||..+|+++++. + ++..--.
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence 788899 999999999999999999994 55555555533 3478899999999998885 4 3333333
Q ss_pred ecccCCCCCCCCCHHHHHHHHH
Q 028334 154 VGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 154 ~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
.|+. +.++|...+.
T Consensus 232 ~G~i--------S~deL~~Ri~ 245 (256)
T TIGR02739 232 YGFI--------SQDELKERIL 245 (256)
T ss_pred eccC--------CHHHHHHHHH
Confidence 4665 7788766654
No 144
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.36 E-value=5.1e-06 Score=62.78 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=54.8
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC---------------------C--hhHHHhCCCC--
Q 028334 86 DRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK---------------------S--PFLAERLKIV-- 136 (210)
Q Consensus 86 ~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~---------------------~--~~l~~~~~i~-- 136 (210)
+.++|.|| +||++|....|.|.+++++|. ++.++.|..+. . ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 55666665 899999999999999999886 47787776653 2 3466778887
Q ss_pred --CCc--EEEEE-ECCEEEEEEeccc
Q 028334 137 --VLP--TLALI-KNAKVDDYVVGFD 157 (210)
Q Consensus 137 --~vP--tll~~-~~G~~v~~~~G~~ 157 (210)
++| +++++ ++|+++..+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 333 77888 5999999998876
No 145
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=2.6e-06 Score=61.78 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=55.8
Q ss_pred hhhHHHHH---hcCCcEEEEec---------CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCCh-------hHHHhCC
Q 028334 75 EKDFFSVV---KASDRVVCHFY---------RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSP-------FLAERLK 134 (210)
Q Consensus 75 ~~~f~~~v---~~~~~vvV~fy---------~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~-------~l~~~~~ 134 (210)
.++|.+.+ .+++.++|.|+ +|||.|.+..|.+.+..+..+. +.|+.+++.+.+ .+....+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 34455544 45556888885 4999999999999998887775 999999998654 3455667
Q ss_pred C-CCCcEEEEEEC
Q 028334 135 I-VVLPTLALIKN 146 (210)
Q Consensus 135 i-~~vPtll~~~~ 146 (210)
+ .++||++=|++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 99999999975
No 146
>PHA03050 glutaredoxin; Provisional
Probab=98.35 E-value=1.1e-06 Score=63.54 Aligned_cols=95 Identities=12% Similarity=0.118 Sum_probs=62.0
Q ss_pred hHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC---C----hhHHHhCCCCCCcEEEEEECCE
Q 028334 77 DFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK---S----PFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 77 ~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~---~----~~l~~~~~i~~vPtll~~~~G~ 148 (210)
.+.+.+.+.+.|+| |. +|||+|+.....|.++.-.++. |-.+|++. . ..+.+..|...+|++ |-+|+
T Consensus 4 ~~v~~~i~~~~V~v-ys~~~CPyC~~ak~~L~~~~i~~~~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~ 78 (108)
T PHA03050 4 EFVQQRLANNKVTI-FVKFTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKT 78 (108)
T ss_pred HHHHHHhccCCEEE-EECCCChHHHHHHHHHHHcCCCcCC--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCE
Confidence 45555555566665 66 9999999999999887554443 44444443 2 235666788999997 55788
Q ss_pred EEEEEecccCCCCCCCCCHHHHHHHHHHCCCcc
Q 028334 149 VDDYVVGFDELGGTDEFSTEELEERLAKAQVIF 181 (210)
Q Consensus 149 ~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l~ 181 (210)
.++.+.-+..+. ....|...|+..|++.
T Consensus 79 ~iGG~ddl~~l~-----~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 79 SIGGYSDLLEID-----NMDALGDILSSIGVLR 106 (108)
T ss_pred EEeChHHHHHHH-----HcCCHHHHHHHccccc
Confidence 776443333111 2346888888888874
No 147
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.32 E-value=1.5e-05 Score=63.36 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=72.4
Q ss_pred CceeecCChhhHHHHHhcCCcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC-----------------
Q 028334 67 GDYSEIQAEKDFFSVVKASDRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK----------------- 125 (210)
Q Consensus 67 ~~v~~i~t~~~f~~~v~~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~----------------- 125 (210)
+....+ +..+| .++.+||.|| .||+.|....+.|.++..+|. ++.++.|.++.
T Consensus 19 g~~~~v-~L~d~-----~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l 92 (187)
T PRK10382 19 GEFIEV-TEKDT-----EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKI 92 (187)
T ss_pred CcceEE-EHHHh-----CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCC
Confidence 445555 44444 4557888888 999999999999999999885 36676666543
Q ss_pred --------ChhHHHhCCC----CCC--cEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 126 --------SPFLAERLKI----VVL--PTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 126 --------~~~l~~~~~i----~~v--Ptll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
...+++.||+ .++ |+.+++. +|+++.........|. ..+++.+.|+..
T Consensus 93 ~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~----~~~eil~~l~al 155 (187)
T PRK10382 93 KYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGR----DASDLLRKIKAA 155 (187)
T ss_pred ceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCC----CHHHHHHHHHhh
Confidence 2356788998 366 9999995 9999998876544332 566776766543
No 148
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.30 E-value=3.2e-06 Score=66.77 Aligned_cols=40 Identities=5% Similarity=-0.094 Sum_probs=32.8
Q ss_pred cCCcE-EEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEc
Q 028334 84 ASDRV-VCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHA 123 (210)
Q Consensus 84 ~~~~v-vV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~ 123 (210)
.++++ |+.+| +||++|+...|.|.++.++|.+ +.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 45554 45569 9999999999999999999874 88888875
No 149
>PRK15000 peroxidase; Provisional
Probab=98.29 E-value=1e-05 Score=64.95 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=68.1
Q ss_pred cCCcEEEEec-C-CChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC----------------------------hhHHH
Q 028334 84 ASDRVVCHFY-R-ENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS----------------------------PFLAE 131 (210)
Q Consensus 84 ~~~~vvV~fy-~-wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~----------------------------~~l~~ 131 (210)
+++.+||+|| . ||+.|....+.|.+++.+|. ++.++.|.++.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 4567999999 4 89999999999999999986 377777766621 23566
Q ss_pred hCCCC------CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 132 RLKIV------VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 132 ~~~i~------~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
.||+. ++|+.+++. +|+++....|..+.|. ..+++.+.|+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr----~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGR----NIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCC----CHHHHHHHHHH
Confidence 78887 699999995 9999999998776663 45666665543
No 150
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.28 E-value=2.4e-07 Score=74.63 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=84.5
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
.+..+ +.+++...++. .+++.|+ |||+.|+...|+|...+.--.+ +++.+||++.++.+.-+|-+.++||++-.
T Consensus 25 ~~~~~-~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRI-DEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEe-cccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 57777 78888766543 3788899 9999999999999999875434 99999999999999999999999999999
Q ss_pred ECCEEEEEEecccCCCCCCCCCHHHHHHHHH--HCCCccc
Q 028334 145 KNAKVDDYVVGFDELGGTDEFSTEELEERLA--KAQVIFL 182 (210)
Q Consensus 145 ~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~--~~~~l~~ 182 (210)
++|.. .|+.|.+ +...+..++. ++..|.|
T Consensus 102 kDGeF-rrysgaR--------dk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 102 KDGEF-RRYSGAR--------DKNDFISFEEHREWQSIDP 132 (248)
T ss_pred ecccc-ccccCcc--------cchhHHHHHHhhhhhccCC
Confidence 99964 6778888 5677777755 4567755
No 151
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.25 E-value=8.2e-06 Score=60.85 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=58.9
Q ss_pred cCCcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC----------------------hhHHHhCCCCC
Q 028334 84 ASDRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS----------------------PFLAERLKIVV 137 (210)
Q Consensus 84 ~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~----------------------~~l~~~~~i~~ 137 (210)
.+++++|.|| .||++|....|.|.+++.+|. ++.|+.|..+.. ..+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5667888888 699999999999999998873 478887776531 23567788876
Q ss_pred Cc---------EEEEEE-CCEEEEEEecccC
Q 028334 138 LP---------TLALIK-NAKVDDYVVGFDE 158 (210)
Q Consensus 138 vP---------tll~~~-~G~~v~~~~G~~~ 158 (210)
.| +++++. +|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 777775 8999999999874
No 152
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.24 E-value=4e-06 Score=62.79 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=34.6
Q ss_pred cCCcEEEEec-CCChh-hHHHHHHHHHHHHHcCC-----eEEEEEEcC
Q 028334 84 ASDRVVCHFY-RENWP-CKVMDKHMSILAKKHIE-----TRFVKIHAE 124 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~-C~~~~~~l~~la~~~~~-----v~f~~vd~~ 124 (210)
.++.+||.|| +||++ |....+.|.+++.+|.. +.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5667999999 99998 99999999999988753 778777764
No 153
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.23 E-value=1.1e-05 Score=66.51 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=59.1
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCC---------hhHHHhCCCCCCcEEEEEE-C-CEEEEEEe
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKS---------PFLAERLKIVVLPTLALIK-N-AKVDDYVV 154 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~---------~~l~~~~~i~~vPtll~~~-~-G~~v~~~~ 154 (210)
-+++|| +.|++|+.+.|++..++++|.= +..+.+|-... ...+.++||..+|+++++. + |+..--..
T Consensus 146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~ 225 (248)
T PRK13703 146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSY 225 (248)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEee
Confidence 788999 9999999999999999999952 44455543222 2356789999999999985 3 44444444
Q ss_pred cccCCCCCCCCCHHHHHHHHH
Q 028334 155 GFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 155 G~~~~g~~~~~~~~~L~~~L~ 175 (210)
|+. +.++|...+.
T Consensus 226 G~i--------S~deL~~Ri~ 238 (248)
T PRK13703 226 GFI--------TQDDLAKRFL 238 (248)
T ss_pred ccC--------CHHHHHHHHH
Confidence 666 7788876654
No 154
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.22 E-value=4.9e-05 Score=59.17 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=84.3
Q ss_pred cCCCceeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCC--CC
Q 028334 64 LGHGDYSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIV--VL 138 (210)
Q Consensus 64 ~~~~~v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~--~v 138 (210)
..+..+.++ |..++......+.+ +++.|+ ........+...+..+|+++.+ +.|+.+|.+..+.+...||+. .+
T Consensus 74 ~~~P~v~~~-t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 74 NSFPLVPEL-TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDL 152 (184)
T ss_dssp HSSTSCEEE-STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSS
T ss_pred hcccccccc-chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccC
Confidence 347789999 88899888887766 777777 7788889999999999999988 999999999888899999998 99
Q ss_pred cEEEEEE--CCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 139 PTLALIK--NAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 139 Ptll~~~--~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|+++++. .|+......| .++.+.|..||+.
T Consensus 153 P~~vi~~~~~~~~~~~~~~--------~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEG--------EITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTSEEEE--SS--------CGCHHHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCC--------CCCHHHHHHHhcC
Confidence 9999997 4442221122 4589999999863
No 155
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.17 E-value=5.9e-05 Score=55.28 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=63.3
Q ss_pred hcCCcEEEEec-C----CChhhHHHH--HHHHHHHHHcCCeEEEEEEcCCC--hhHHHhCCCCCCcEEEEEE----CCEE
Q 028334 83 KASDRVVCHFY-R----ENWPCKVMD--KHMSILAKKHIETRFVKIHAEKS--PFLAERLKIVVLPTLALIK----NAKV 149 (210)
Q Consensus 83 ~~~~~vvV~fy-~----wC~~C~~~~--~~l~~la~~~~~v~f~~vd~~~~--~~l~~~~~i~~vPtll~~~----~G~~ 149 (210)
.+.+.++|+|+ + ||..|+... |.+.++... ++.+...|++.. ..++..+++.++|++.++. ++.+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 34445999999 9 888886654 344444332 478888888765 5688999999999999982 4467
Q ss_pred EEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 150 DDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 150 v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
+.++.|.. ++++|...|..
T Consensus 93 v~~i~G~~--------~~~~ll~~L~~ 111 (116)
T cd02991 93 VGRLEGLI--------QPEDLINRLTF 111 (116)
T ss_pred EEEEeCCC--------CHHHHHHHHHH
Confidence 89999988 78998888865
No 156
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.14 E-value=1.7e-05 Score=65.09 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=56.2
Q ss_pred cEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEc------------------------------------------
Q 028334 87 RVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHA------------------------------------------ 123 (210)
Q Consensus 87 ~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~------------------------------------------ 123 (210)
.+|+.|. |.||+|+.+.+.+.++...--.+.|+-...
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v 188 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDI 188 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchH
Confidence 3788899 999999999999988755211122221111
Q ss_pred CCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 124 EKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 124 ~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
..+..+++++||.++||++ |.+|+.+ .|.. +.+.|+.+|.++
T Consensus 189 ~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~--------~~~~L~~~l~~~ 230 (232)
T PRK10877 189 ADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQ--------GPKEMKAFLDEH 230 (232)
T ss_pred HHhHHHHHHcCCccccEEE-EcCCeEe---eCCC--------CHHHHHHHHHHc
Confidence 0123467789999999988 7899765 6776 689999999764
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.13 E-value=3.1e-05 Score=71.20 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=63.2
Q ss_pred EEEE-ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCC
Q 028334 88 VVCH-FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 165 (210)
Q Consensus 88 vvV~-fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~ 165 (210)
+-|. |. ++|++|......+.+++...|++..--+++...++++++|+|.++|++++ ||+++ +.|..
T Consensus 478 ~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~-------- 545 (555)
T TIGR03143 478 VNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKK-------- 545 (555)
T ss_pred eEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCC--------
Confidence 4444 56 99999999999999999999999999999999999999999999999776 78755 34655
Q ss_pred CHHHHHHHH
Q 028334 166 STEELEERL 174 (210)
Q Consensus 166 ~~~~L~~~L 174 (210)
+.+++..+|
T Consensus 546 ~~~~~~~~~ 554 (555)
T TIGR03143 546 TIEEMLELI 554 (555)
T ss_pred CHHHHHHhh
Confidence 577777765
No 158
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.11 E-value=1.8e-05 Score=50.70 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=42.0
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh----HHHhCCCCCCcEEEEEECCEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF----LAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~----l~~~~~i~~vPtll~~~~G~~v 150 (210)
|+.|+ +||++|+.....|.+. ++.|-.+|++..+. +.+..|..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 46688 9999999999888332 58888889888754 333459999999876 88754
No 159
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.11 E-value=3.8e-06 Score=59.85 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=51.8
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh-------HHHhCCCCCCcEEEEEECCEEEEEEeccc
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF-------LAERLKIVVLPTLALIKNAKVDDYVVGFD 157 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~-------l~~~~~i~~vPtll~~~~G~~v~~~~G~~ 157 (210)
.+|+| |. ||||+|..+...|.++ ++.|..+|++..+. +.+..|...+|.+ |-+|+.++.+.-+.
T Consensus 8 ~~Vvv-ysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iGG~ddl~ 79 (99)
T TIGR02189 8 KAVVI-FSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVGGLENVM 79 (99)
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEcCHHHHH
Confidence 44554 77 9999999999888665 34455666665432 3334577899996 66887665443222
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCc
Q 028334 158 ELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 158 ~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
.+ .....|..+|...|++
T Consensus 80 ~l-----~~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 80 AL-----HISGSLVPMLKQAGAL 97 (99)
T ss_pred HH-----HHcCCHHHHHHHhCcc
Confidence 11 0234677888877765
No 160
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.08 E-value=4.3e-05 Score=61.36 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=63.0
Q ss_pred cCCcEEE-Eec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC---------------------------ChhHHHh
Q 028334 84 ASDRVVC-HFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK---------------------------SPFLAER 132 (210)
Q Consensus 84 ~~~~vvV-~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~---------------------------~~~l~~~ 132 (210)
.++.+|| .|| +||++|....+.|.++..+|. ++.++.|.++. ...+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4455555 577 999999999999999988875 36777665552 2246678
Q ss_pred CCCC------CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 133 LKIV------VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 133 ~~i~------~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
||+. .+|+++++. +|++.....+....| -..+++.+.|..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~g----r~~~ellr~l~~ 152 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETG----RNIDEIIRITKA 152 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHHH
Confidence 8884 589999995 999887776554333 156666666654
No 161
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.04 E-value=2.1e-05 Score=53.32 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=42.7
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-----hHHHhCCCCCCcEEEEEECCEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-----FLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-----~l~~~~~i~~vPtll~~~~G~~v 150 (210)
|+.|+ +||++|..+.+.|.++... ..++.++..... .+.+.+|+.++|++ |-+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 46688 9999999999999888653 567777776552 35566789999996 5677653
No 162
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.00 E-value=0.00015 Score=61.87 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=71.7
Q ss_pred CCCceeecCChhhHHHHHhcCCcEEEEec-CCChhhHH-----HHHHHHHHHHH---cCCeEEEEEEcCCChhHHHhCCC
Q 028334 65 GHGDYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKV-----MDKHMSILAKK---HIETRFVKIHAEKSPFLAERLKI 135 (210)
Q Consensus 65 ~~~~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~-----~~~~l~~la~~---~~~v~f~~vd~~~~~~l~~~~~i 135 (210)
|.-.++.+ +.++|.+++++...++|+|+ |--+.-.. |...+=+|+.+ ..++.|+.||..+...+++++|+
T Consensus 32 GkDRVi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 32 GKDRVIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp SS--CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred CccceEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 34468999 99999999999999999888 65332211 11222233333 34599999999999999999999
Q ss_pred CCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 136 VVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 136 ~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
...+++.+|++|+++.-. |.. +++.|..||-.
T Consensus 111 ~E~~SiyVfkd~~~IEyd-G~~--------saDtLVeFl~d 142 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIEYD-GER--------SADTLVEFLLD 142 (383)
T ss_dssp -STTEEEEEETTEEEEE--S----------SHHHHHHHHHH
T ss_pred cccCcEEEEECCcEEEec-Ccc--------CHHHHHHHHHH
Confidence 999999999999988744 776 79999999854
No 163
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.00 E-value=7.2e-05 Score=60.04 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=62.1
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC---------------------------ChhHHHhCCCC-
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK---------------------------SPFLAERLKIV- 136 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~---------------------------~~~l~~~~~i~- 136 (210)
+|+.|| +||+.|....+.|.+++.+|. ++.++.|.++. ...+++.||+.
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~ 108 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMID 108 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCcc
Confidence 455677 999999999999999999885 47787777653 12466788875
Q ss_pred ---C----CcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 137 ---V----LPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 137 ---~----vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+ +|+.+++ .+|++.....+....|. ..+++.+.|...
T Consensus 109 ~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr----~~~ell~~l~~l 153 (203)
T cd03016 109 PDAGSTLTVRAVFIIDPDKKIRLILYYPATTGR----NFDEILRVVDAL 153 (203)
T ss_pred ccCCCCceeeEEEEECCCCeEEEEEecCCCCCC----CHHHHHHHHHHH
Confidence 2 3467777 59999988887654432 466677766553
No 164
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.96 E-value=0.00013 Score=50.01 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=52.5
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHH---HhCCCCCCcEEEEEECCEEEEEEecccCCCCCCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLA---ERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDE 164 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~---~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~ 164 (210)
|..|. +||++|......|.+ .++.|-.+|++..+... ...|...+|++++ +|. .+.|+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~------- 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFR------- 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCC-------
Confidence 44567 999999999988854 36889899998876532 3457889999854 453 345665
Q ss_pred CCHHHHHHHHHHCCC
Q 028334 165 FSTEELEERLAKAQV 179 (210)
Q Consensus 165 ~~~~~L~~~L~~~~~ 179 (210)
.+.|.++...+.+
T Consensus 66 --~~~l~~~~~~~~~ 78 (81)
T PRK10329 66 --PDMINRLHPAPHA 78 (81)
T ss_pred --HHHHHHHHHhhhh
Confidence 8899888876543
No 165
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.96 E-value=9e-05 Score=67.56 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=62.5
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCC
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFS 166 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~ 166 (210)
-+..|+ ++|++|......+.+++...|++.+-.+|....++++.+|++.++|++++ +|+.+ +.|.. +
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~--------~ 186 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRM--------T 186 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCC--------C
Confidence 355677 99999999999999999999999999999999999999999999999865 77644 34555 4
Q ss_pred HHHHHHHHHH
Q 028334 167 TEELEERLAK 176 (210)
Q Consensus 167 ~~~L~~~L~~ 176 (210)
.+.+...+.+
T Consensus 187 ~~~~~~~~~~ 196 (517)
T PRK15317 187 LEEILAKLDT 196 (517)
T ss_pred HHHHHHHHhc
Confidence 5555555543
No 166
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.96 E-value=7.4e-05 Score=50.71 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=41.5
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC---hhHHHhCCCCCCcEEEEEECCEEE
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS---PFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~---~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
-|+.|+ +||++|+.....|... ++.|..+|++.. ..+....|...+|.++ .+|+.+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 68 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI 68 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE
Confidence 455577 9999999999888643 566777887766 3455567889999985 478654
No 167
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.93 E-value=0.00015 Score=58.85 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=63.5
Q ss_pred cCCc-EEEEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC---------------------------hhHHHh
Q 028334 84 ASDR-VVCHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS---------------------------PFLAER 132 (210)
Q Consensus 84 ~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~---------------------------~~l~~~ 132 (210)
.++. ||+.|+ +||++|....+.|.+++.+|. ++.++.|.++.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3445 456777 999999999999999999984 477777776641 235677
Q ss_pred CCCC-------CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 133 LKIV-------VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 133 ~~i~-------~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
||+. .+|+++++. +|+++..+......| -..+.+.+.|..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~g----r~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVG----RNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCC----CCHHHHHHHHHH
Confidence 8873 689999995 899988876443322 145666666654
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.93 E-value=6e-05 Score=60.06 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEE--EcC-------------------------------------
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKI--HAE------------------------------------- 124 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~v--d~~------------------------------------- 124 (210)
++..++.|. ++|++|+.+.+.+.+ ...++.+..+ ...
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 445788888 999999999998876 1223322221 111
Q ss_pred ------CChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 125 ------KSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 125 ------~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
.+..++..+||.++||++ |.+|+. +.|.. +.+.|..+|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~--------~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAP--------PAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCC--------CHHHHHhhC
Confidence 112466789999999997 888976 45665 577777664
No 169
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.92 E-value=0.00014 Score=54.66 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.9
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEE
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKI 121 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~v 121 (210)
+.+|+.|+ ++|++|+.+.|.+.++...++++.++..
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 34778888 9999999999999998888876554433
No 170
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.92 E-value=7.1e-05 Score=49.81 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=42.0
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHh---CCCCCCcEEEEEECCEEEEEEeccc
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAER---LKIVVLPTLALIKNAKVDDYVVGFD 157 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~---~~i~~vPtll~~~~G~~v~~~~G~~ 157 (210)
..|. ++|++|+.....|.+. ++.|-.+|++.++..... .|...+|++++ +|. ..+.|+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~ 64 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFR 64 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccC
Confidence 3466 9999999999888652 677888898887655444 48889999644 453 2345554
No 171
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.91 E-value=0.00016 Score=58.72 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=64.9
Q ss_pred cCCcEEE-Eec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC---------------------------hhHHHh
Q 028334 84 ASDRVVC-HFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS---------------------------PFLAER 132 (210)
Q Consensus 84 ~~~~vvV-~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~---------------------------~~l~~~ 132 (210)
.++.+|| .|+ +||+.|....+.|.+++.+|. ++.++.+.++.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4455555 566 999999999999999999984 477777776632 235567
Q ss_pred CCCC-------CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 133 LKIV-------VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 133 ~~i~-------~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
||+. .+|+.+++. +|++.....+....|. ..+++.+.|+.
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr----~~~eilr~l~a 159 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGR----NIDEILRAIRA 159 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCC----CHHHHHHHHHH
Confidence 8863 478889995 9999998887765552 56666666654
No 172
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.91 E-value=0.00029 Score=50.48 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=63.7
Q ss_pred ecCChhhHHHHHhc--CCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCChh----HHHhCCCC-CCcEE
Q 028334 71 EIQAEKDFFSVVKA--SDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKSPF----LAERLKIV-VLPTL 141 (210)
Q Consensus 71 ~i~t~~~f~~~v~~--~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~~~----l~~~~~i~-~vPtl 141 (210)
.|+|.+++...+.. .++++|+=. ++|+-+......|++.....++ +.++.+++-+.+. ++..|||. .=|-+
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 46688999998887 344555444 7899999999999999999887 9999999998754 67889986 68999
Q ss_pred EEEECCEEEEEEecc
Q 028334 142 ALIKNAKVDDYVVGF 156 (210)
Q Consensus 142 l~~~~G~~v~~~~G~ 156 (210)
+++++|+++......
T Consensus 83 ili~~g~~v~~aSH~ 97 (105)
T PF11009_consen 83 ILIKNGKVVWHASHW 97 (105)
T ss_dssp EEEETTEEEEEEEGG
T ss_pred EEEECCEEEEECccc
Confidence 999999999877653
No 173
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.91 E-value=0.00022 Score=59.46 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=64.0
Q ss_pred cCCcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC----------------------------ChhHHH
Q 028334 84 ASDRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK----------------------------SPFLAE 131 (210)
Q Consensus 84 ~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~----------------------------~~~l~~ 131 (210)
.++.+|+.|| .||++|....+.|.++..+|. ++.++.|.++. ...+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4456777777 999999999999999998885 46666666553 124677
Q ss_pred hCCCC-----CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 132 RLKIV-----VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 132 ~~~i~-----~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
.||+. .+|+.+++. +|+++.....-...|. ..+++.+.|.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr----~v~eiLr~l~ 222 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGR----SVDETLRLFD 222 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCC----CHHHHHHHHH
Confidence 89985 589999995 9999998865444332 4566656554
No 174
>PRK13189 peroxiredoxin; Provisional
Probab=97.86 E-value=0.00018 Score=58.56 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=62.5
Q ss_pred cCCcEE-EEec-CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC---------------------------ChhHHHh
Q 028334 84 ASDRVV-CHFY-RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK---------------------------SPFLAER 132 (210)
Q Consensus 84 ~~~~vv-V~fy-~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~---------------------------~~~l~~~ 132 (210)
.++.+| +.|| +||+.|....+.|.+++.+|. ++.++.|.++. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 444444 5667 999999999999999998885 47777666552 1235677
Q ss_pred CCCC-------CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 133 LKIV-------VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 133 ~~i~-------~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
||+. .+|+++++. +|.+.....+....|. ..+++.+.|..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr----~~~eilr~l~a 161 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGR----NMDEILRLVKA 161 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCC----CHHHHHHHHHH
Confidence 8875 578899995 9999888876553332 45566666654
No 175
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.86 E-value=6.4e-05 Score=48.92 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=41.8
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhH----HHhCCCCCCcEEEEEECCEEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFL----AERLKIVVLPTLALIKNAKVDDY 152 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l----~~~~~i~~vPtll~~~~G~~v~~ 152 (210)
|+.|+ +||++|+.+...|.+.. +.|..+|+...+.. ....+...+|++ |.+|+.++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~igg 63 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIGG 63 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEec
Confidence 45577 99999999999887663 67778888877543 344577888876 458876653
No 176
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.78 E-value=0.00033 Score=55.97 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=68.1
Q ss_pred cCCcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCCC----------------------------hhHHH
Q 028334 84 ASDRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEKS----------------------------PFLAE 131 (210)
Q Consensus 84 ~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~~----------------------------~~l~~ 131 (210)
.++.++|+|| .||+.|....+.|.+++.+|. ++.++.|.++.. ..+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 4566888899 789999999999999999987 477777776522 23667
Q ss_pred hCCCC------CCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 132 RLKIV------VLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 132 ~~~i~------~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
.||+. .+|+.+++. +|+++...++....|. ..+++.+.|.....+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r----~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGR----NVEEVLRLLEAFQFV 166 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCC----CHHHHHHHHHhhhhH
Confidence 88885 468989995 9999998887665442 456666666655444
No 177
>PRK10824 glutaredoxin-4; Provisional
Probab=97.77 E-value=2.8e-05 Score=56.87 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=57.8
Q ss_pred hhHHHHHhcCCcEEEEec-----CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHH----hCCCCCCcEEEEEEC
Q 028334 76 KDFFSVVKASDRVVCHFY-----RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAE----RLKIVVLPTLALIKN 146 (210)
Q Consensus 76 ~~f~~~v~~~~~vvV~fy-----~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~----~~~i~~vPtll~~~~ 146 (210)
.++.+.+.++.+|||+-. ||||+|+.....|..+. +.|..+|+...+.+.. .-|-..+|. +|-+
T Consensus 5 ~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~ 77 (115)
T PRK10824 5 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQ--LWVD 77 (115)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCe--EEEC
Confidence 345555556677777654 39999999998887763 4455566666654433 234455555 6679
Q ss_pred CEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 147 AKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 147 G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
|+.|+.+.-...+ .....|..+|+..|+.
T Consensus 78 G~~IGG~ddl~~l-----~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 78 GELVGGCDIVIEM-----YQRGELQQLIKETAAK 106 (115)
T ss_pred CEEEcChHHHHHH-----HHCCCHHHHHHHHHhh
Confidence 9887655433311 1234577778777775
No 178
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.72 E-value=0.00045 Score=62.98 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=61.4
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCC
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFS 166 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~ 166 (210)
-+-.|+ +.|++|......+.+++...|++.+-.+|....++++.+|++.++|++++ +|+.+ +.|.. +
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~--------~ 187 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRM--------D 187 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCC--------C
Confidence 355577 99999999999999999999999998999999999999999999999865 66644 34554 4
Q ss_pred HHHHHHHHH
Q 028334 167 TEELEERLA 175 (210)
Q Consensus 167 ~~~L~~~L~ 175 (210)
.+.+...|.
T Consensus 188 ~~~~~~~l~ 196 (515)
T TIGR03140 188 LAELLEKLE 196 (515)
T ss_pred HHHHHHHHh
Confidence 555544444
No 179
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.72 E-value=0.00039 Score=46.07 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=39.8
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh---HHHhCCCCCCcEEEEEECCEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF---LAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~---l~~~~~i~~vPtll~~~~G~~v 150 (210)
|+.|. +||++|......|.+. ++.|..+|++..+. +....|...+|.+ |.+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 44566 9999999998888753 56777778776642 3344688999996 5678654
No 180
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.71 E-value=0.00063 Score=51.77 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=31.4
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHc--CC-eEEEEEEc
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKH--IE-TRFVKIHA 123 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~--~~-v~f~~vd~ 123 (210)
+.+|+.|+ +.|++|+.+.+.+.++.++| ++ +.|+...+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 33677788 99999999999999999998 55 88877765
No 181
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00016 Score=51.93 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=53.0
Q ss_pred HHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-hH----HHhCCCCCCcEEEEEECCEEEEE
Q 028334 79 FSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-FL----AERLKIVVLPTLALIKNAKVDDY 152 (210)
Q Consensus 79 ~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-~l----~~~~~i~~vPtll~~~~G~~v~~ 152 (210)
...+...++||| |. +||++|..+...|..+ -...+++.+|-..+. ++ .+.-+.+.+|. +|-+|+.++.
T Consensus 7 v~~~i~~~~VVi-fSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~--vFI~Gk~iGG 80 (104)
T KOG1752|consen 7 VRKMISENPVVI-FSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPN--VFIGGKFIGG 80 (104)
T ss_pred HHHHhhcCCEEE-EECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCE--EEECCEEEcC
Confidence 344445555666 88 9999999988777761 123677777776553 33 33345678888 4558887753
Q ss_pred EecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 153 VVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 153 ~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
..-...+. ....|..+|++.+.+
T Consensus 81 ~~dl~~lh-----~~G~L~~~l~~~~~~ 103 (104)
T KOG1752|consen 81 ASDLMALH-----KSGELVPLLKEAGAL 103 (104)
T ss_pred HHHHHHHH-----HcCCHHHHHHHhhcc
Confidence 33222111 233455555555443
No 182
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.69 E-value=0.0006 Score=47.60 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=65.5
Q ss_pred eecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC-CeEEEEEEcCCChhHHHhCCCCCCcEEEEEECC
Q 028334 70 SEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI-ETRFVKIHAEKSPFLAERLKIVVLPTLALIKNA 147 (210)
Q Consensus 70 ~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~-~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G 147 (210)
.+|.+.+++...+.....+||-|+ ++|+ .....|.++|..+. .+.|+.+. .+.+++.+++. .|++++|+.+
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~ 74 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPF 74 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCc
Confidence 356566777777777777888888 9887 46678888998886 48887655 45667778775 5999999764
Q ss_pred -EEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 148 -KVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 148 -~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
.....+.|.. +.+.|..||..+
T Consensus 75 ~~~~~~y~g~~--------~~~~l~~fi~~~ 97 (97)
T cd02981 75 EEEPVEYDGEF--------TEESLVEFIKDN 97 (97)
T ss_pred ccCCccCCCCC--------CHHHHHHHHHhC
Confidence 2222333432 578999998753
No 183
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.62 E-value=0.00017 Score=48.62 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=39.6
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhH----HHhCCCCCCcEEEEEECCEEEE
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFL----AERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l----~~~~~i~~vPtll~~~~G~~v~ 151 (210)
+.|+ +||++|......|++. ++.|-.+|++..+.. .+..|...+|++ |-+|+.++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 4577 9999999999998754 456666777766544 344578899996 55786543
No 184
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.61 E-value=0.00039 Score=46.22 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=40.1
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHH----HhCCCC-CCcEEEEEECCEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLA----ERLKIV-VLPTLALIKNAKVDD 151 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~----~~~~i~-~vPtll~~~~G~~v~ 151 (210)
|+.|+ +||++|......|.+. ++.|..++++..+... ..++.. .+|++ |-+|+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence 45577 9999999999888653 5777778888764433 345766 89976 56776554
No 185
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.60 E-value=0.0003 Score=55.66 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=33.3
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE--TRFVKIHAE 124 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~ 124 (210)
.++.+||.|| +||++|.. .+.|+++.++|.+ +.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5677999999 99999975 7899999999863 888887663
No 186
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.57 E-value=0.00072 Score=56.11 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=54.2
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC----------------------------------------
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE---------------------------------------- 124 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~---------------------------------------- 124 (210)
+.+|+.|. +.|++|+.+.+.+..+.+. .++.+..+-+.
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~ 196 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPAS 196 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcccc
Confidence 34777899 9999999999998877654 22333222110
Q ss_pred ----------CChhHHHhCCCCCCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 125 ----------KSPFLAERLKIVVLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 125 ----------~~~~l~~~~~i~~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
++..+...+||+++||+++-. +| .+..+.|.. +.+.|.++|.
T Consensus 197 ~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~--------~~~~L~~~l~ 249 (251)
T PRK11657 197 IPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLP--------DPAQLAEIMG 249 (251)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCC--------CHHHHHHHhC
Confidence 011255679999999998875 46 344566877 6888888874
No 187
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.56 E-value=0.00061 Score=45.29 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=41.7
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh----HHHhCCCCCCcEEEEEECCEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF----LAERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~----l~~~~~i~~vPtll~~~~G~~v~ 151 (210)
|+.|+ +||+.|+.....|++. ++.|..+|+...+. +.+..+-..+|++ |.+|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 34466 9999999999888763 57788888887654 5555677889996 55777655
No 188
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.51 E-value=0.00099 Score=47.13 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=46.4
Q ss_pred HHHHHhcCCcEEEEec-----CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhH----HHhCCCCCCcEEEEEECCE
Q 028334 78 FFSVVKASDRVVCHFY-----RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFL----AERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 78 f~~~v~~~~~vvV~fy-----~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l----~~~~~i~~vPtll~~~~G~ 148 (210)
+...+.++.+|+|+-. |||++|......|.++ ++.|..+|+...+.+ .+..|...+|.+ |.+|+
T Consensus 4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~ 76 (97)
T TIGR00365 4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGE 76 (97)
T ss_pred HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 3444455567777654 7999999999888664 466778888776543 344567788986 56787
Q ss_pred EEE
Q 028334 149 VDD 151 (210)
Q Consensus 149 ~v~ 151 (210)
.++
T Consensus 77 ~iG 79 (97)
T TIGR00365 77 FVG 79 (97)
T ss_pred EEe
Confidence 554
No 189
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.50 E-value=0.0026 Score=47.48 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=71.3
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEecCC---Chh-h-HHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCC--CC
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFYRE---NWP-C-KVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIV--VL 138 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy~w---C~~-C-~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~--~v 138 (210)
.++++++.+.+..........+|-|.|. |.+ + ..+...|.++|++|.+ +.|+.+|.+..+.+.+.||+. .+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 5788844555555554443344444453 332 3 4567889999999976 899999999998899999995 59
Q ss_pred cEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 139 PTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 139 Ptll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
|+++++...+..... .. ..|+.+.|..|+..+
T Consensus 83 P~v~i~~~~~~KY~~--~~-----~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 83 PAMVAINFRKMKFAT--LK-----GSFSEDGINEFLREL 114 (130)
T ss_pred CEEEEEecccCcccc--cc-----CccCHHHHHHHHHHH
Confidence 999999743222221 11 245899999999863
No 190
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.48 E-value=0.0013 Score=44.86 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=56.6
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEE-EEEecccCCCCCCCCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD-DYVVGFDELGGTDEFS 166 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v-~~~~G~~~~g~~~~~~ 166 (210)
|+.|. +.|+-|..+...|..+....+ +.+-.+|++.++.+..+|+. .+|.+.+-..++.. ..... ..|+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~-------~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELK-------WRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEE-------SSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeC-------CCCC
Confidence 56677 999999999999999877654 99999999999999999996 89996553211000 11111 2347
Q ss_pred HHHHHHHHH
Q 028334 167 TEELEERLA 175 (210)
Q Consensus 167 ~~~L~~~L~ 175 (210)
.+.|.++|+
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 899999885
No 191
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.41 E-value=0.0025 Score=52.03 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=76.0
Q ss_pred CCceeecCChhh---HHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCCC--------------
Q 028334 66 HGDYSEIQAEKD---FFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEKS-------------- 126 (210)
Q Consensus 66 ~~~v~~i~t~~~---f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~~-------------- 126 (210)
...++.+ +++. +.+....+.++||.|+ -+|||-..-.+.|++++++|++ +.|+-|-+.+.
T Consensus 81 ns~vv~l-~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~ 159 (237)
T PF00837_consen 81 NSPVVTL-DGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYE 159 (237)
T ss_pred CCceEee-CCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCcee
Confidence 4568888 5544 6677788888999999 8899999999999999999998 66765554431
Q ss_pred ----hh----------------------------HHHhCCCCCCc-EEEEEECCEEEEEEecccCCCCCCCCCHHHHHHH
Q 028334 127 ----PF----------------------------LAERLKIVVLP-TLALIKNAKVDDYVVGFDELGGTDEFSTEELEER 173 (210)
Q Consensus 127 ----~~----------------------------l~~~~~i~~vP-tll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~ 173 (210)
.. ....|| ++| .++++++|+++. .|.. |+..+..++++.|
T Consensus 160 i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y--~Gg~---GP~~y~~~e~r~~ 232 (237)
T PF00837_consen 160 IPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVY--KGGP---GPFGYSPEELREW 232 (237)
T ss_pred ecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEE--eCCC---CCCcCCHHHHHHH
Confidence 11 122333 477 566778999765 3332 3457899999999
Q ss_pred HHHCC
Q 028334 174 LAKAQ 178 (210)
Q Consensus 174 L~~~~ 178 (210)
|+++.
T Consensus 233 L~~~~ 237 (237)
T PF00837_consen 233 LEKYK 237 (237)
T ss_pred HHhcC
Confidence 99863
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.33 E-value=0.0019 Score=49.90 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=30.0
Q ss_pred cCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEE
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFV 119 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~ 119 (210)
+++..|+.|+ +.|++|+.+.+.+..+..++++ +.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 5566888899 9999999999999999998875 4443
No 193
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0057 Score=47.08 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=65.7
Q ss_pred hcCCcEEEEec--CCChhhHHHHHHHHHHHHHcCC--eEEEEEEcCC---------------------ChhHHHhCCCCC
Q 028334 83 KASDRVVCHFY--RENWPCKVMDKHMSILAKKHIE--TRFVKIHAEK---------------------SPFLAERLKIVV 137 (210)
Q Consensus 83 ~~~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~---------------------~~~l~~~~~i~~ 137 (210)
..++.||++|| .+++.|....-.|.....+|.. +.++-|..+. ...+++.||+..
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 35567999999 8999999999999888887754 6676666653 345788888743
Q ss_pred ------------CcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 138 ------------LPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 138 ------------vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
.++.+++ ++|.+...+..+...| -.+.+.+.|++.
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~-----h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKG-----HADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcc-----cHHHHHHHHHHh
Confidence 4566677 5899999887666544 356666666653
No 194
>PRK10638 glutaredoxin 3; Provisional
Probab=97.21 E-value=0.0017 Score=44.33 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=40.3
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh----HHHhCCCCCCcEEEEEECCEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF----LAERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~----l~~~~~i~~vPtll~~~~G~~v~ 151 (210)
|+.|. +||++|+.....|.+. ++.|..+|++..+. +.+..|...+|++ |.+|+.++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 34566 9999999999888754 46677778876643 3455678899986 44786654
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.20 E-value=0.0015 Score=44.62 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=40.9
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEc--CCC------------------------------hhHHHhCC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHA--EKS------------------------------PFLAERLK 134 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~--~~~------------------------------~~l~~~~~ 134 (210)
|+.|+ +.|+.|..+.+.+.++...+++ +.|....+ ... ......+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 35688 9999999999999999755554 55554433 221 12456789
Q ss_pred CCCCcEEEEEE
Q 028334 135 IVVLPTLALIK 145 (210)
Q Consensus 135 i~~vPtll~~~ 145 (210)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999988864
No 196
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.20 E-value=0.0056 Score=44.42 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHHHHcC-C-eEEEEEEcCCChhHHHhCCCCC----CcEEEEEECCEEEEEEecccCCCCCCCC-CHHH
Q 028334 97 WPCKVMDKHMSILAKKHI-E-TRFVKIHAEKSPFLAERLKIVV----LPTLALIKNAKVDDYVVGFDELGGTDEF-STEE 169 (210)
Q Consensus 97 ~~C~~~~~~l~~la~~~~-~-v~f~~vd~~~~~~l~~~~~i~~----vPtll~~~~G~~v~~~~G~~~~g~~~~~-~~~~ 169 (210)
..-..+...+.++|+.|+ + +.|+.+|.+......+.||+.. +|++.++.... .++. .. ..+ +.+.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~--~KY~-~~-----~~~~t~e~ 102 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG--KKYV-ME-----EEFSDVDA 102 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC--CccC-CC-----cccCCHHH
Confidence 344678889999999999 5 9999999998877889999984 99999986322 2332 21 245 7899
Q ss_pred HHHHHHHC
Q 028334 170 LEERLAKA 177 (210)
Q Consensus 170 L~~~L~~~ 177 (210)
|.+|+..+
T Consensus 103 i~~F~~~f 110 (111)
T cd03073 103 LEEFLEDF 110 (111)
T ss_pred HHHHHHHh
Confidence 99998764
No 197
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.20 E-value=0.0041 Score=45.10 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=70.4
Q ss_pred eecCChhhHHHHHhcCCcEEEEecCCChhhHHHHHHHHHHHHH---cCC-eEEEEEEcCCChhHHHhCCCCC--CcEEEE
Q 028334 70 SEIQAEKDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAKK---HIE-TRFVKIHAEKSPFLAERLKIVV--LPTLAL 143 (210)
Q Consensus 70 ~~i~t~~~f~~~v~~~~~vvV~fy~wC~~C~~~~~~l~~la~~---~~~-v~f~~vd~~~~~~l~~~~~i~~--vPtll~ 143 (210)
.++ |.+++......+-+..+.|+ .-..-..+...+..+|++ |.+ +.|+.+|.+......+.||+.. +|++.+
T Consensus 2 ~e~-t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 2 REI-TFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred ccc-ccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 456 66777655555555555555 222236788899999999 988 9999999999877899999987 999988
Q ss_pred EECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 144 IKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 144 ~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
...... ..+... ...++.+.|+.|+..+
T Consensus 80 ~~~~~~-~Ky~~~-----~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 80 DSFRHM-YLFPDF-----EDVYVPGKLKQFVLDL 107 (111)
T ss_pred Ecchhc-CcCCCC-----ccccCHHHHHHHHHHH
Confidence 863221 122111 1345889999999764
No 198
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0062 Score=51.44 Aligned_cols=108 Identities=16% Similarity=0.249 Sum_probs=80.7
Q ss_pred CCceeecCChhhHHHHHhcCCc---EEEEec-C----CChhhHHHHHHHHHHHHHcC----C-----eEEEEEEcCCChh
Q 028334 66 HGDYSEIQAEKDFFSVVKASDR---VVCHFY-R----ENWPCKVMDKHMSILAKKHI----E-----TRFVKIHAEKSPF 128 (210)
Q Consensus 66 ~~~v~~i~t~~~f~~~v~~~~~---vvV~fy-~----wC~~C~~~~~~l~~la~~~~----~-----v~f~~vd~~~~~~ 128 (210)
...++.+ +.+.|...++..+. ++|.|. . .|.-|+.....+.-+|..+. . +-|..||.++.|.
T Consensus 39 ~~~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 39 ESGVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 4469999 89999999985554 777776 3 49999999999998888742 1 6799999999999
Q ss_pred HHHhCCCCCCcEEEEEE--CCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 129 LAERLKIVVLPTLALIK--NAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 129 l~~~~~i~~vPtll~~~--~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+.+.+++.++|++.+|. .|+.. ..+....+. -.+..+.+.+|+++.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~--~s~~~d~~~-~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKK--RSDQMDQQD-LGFEAEQIAQFVADR 165 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccc--cCccchhhh-cchhHHHHHHHHHHh
Confidence 99999999999999994 55544 122111111 133578888888764
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.16 E-value=0.0024 Score=44.35 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=41.7
Q ss_pred cCCcEEEEec-----CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhH----HHhCCCCCCcEEEEEECCEEE
Q 028334 84 ASDRVVCHFY-----RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFL----AERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 84 ~~~~vvV~fy-----~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l----~~~~~i~~vPtll~~~~G~~v 150 (210)
++.+|+|+-. |||++|......|... ++.|..+|+...+.+ .+..|-..+|.+ |.+|+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 3455666543 5999999999888765 356777777766543 445678899996 5578754
No 200
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.002 Score=43.90 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=37.0
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-----hHHHhC-CCCCCcEEEEEECCE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-----FLAERL-KIVVLPTLALIKNAK 148 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-----~l~~~~-~i~~vPtll~~~~G~ 148 (210)
++.|. +|||+|.+....|.+. ++.|..++++..+ ...+.. |.+.+|.++ -+|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCE
Confidence 44566 9999999999888732 5677777776654 233344 789999954 4665
No 201
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.94 E-value=0.002 Score=57.21 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=54.1
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHH---Hh---------CCCCCCcEEEEEECCEEEEEEec
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLA---ER---------LKIVVLPTLALIKNAKVDDYVVG 155 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~---~~---------~~i~~vPtll~~~~G~~v~~~~G 155 (210)
|+.|. ||||+|+.....|.+. ++.|..+|+++.+... .. .|...+|++++ +|+.++ |
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig---G 73 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG---G 73 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe---C
Confidence 45577 9999999998888664 5788888988765322 22 47789999855 776554 4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHCCCcccCCC
Q 028334 156 FDELGGTDEFSTEELEERLAKAQVIFLEGE 185 (210)
Q Consensus 156 ~~~~g~~~~~~~~~L~~~L~~~~~l~~~~~ 185 (210)
+.++.- ....|...|+..++..+...
T Consensus 74 f~~l~~----~~g~l~~~~~~~~~~~~~~~ 99 (410)
T PRK12759 74 YDNLMA----RAGEVIARVKGSSLTTFSKT 99 (410)
T ss_pred chHHHH----HhCCHHHHhcCCcccccccc
Confidence 432210 24456667766666644433
No 202
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.94 E-value=0.041 Score=40.44 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=67.2
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec---CCChhhHHHHHHHHHHH----HHcCCeEEEEEEcC-----CChhHHHhCCC-
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY---RENWPCKVMDKHMSILA----KKHIETRFVKIHAE-----KSPFLAERLKI- 135 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy---~wC~~C~~~~~~l~~la----~~~~~v~f~~vd~~-----~~~~l~~~~~i- 135 (210)
.+.+ +.-.|...|.+.+.++|.|= ||-..- ..|.++| ..-+++.++.|-+. .|.+++++|+|
T Consensus 6 ~v~L-D~~tFdKvi~kf~~~LVKFD~ayPyGeKh----d~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 6 CVPL-DELTFDKVIPKFKYVLVKFDVAYPYGEKH----DAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp SEEE-STTHHHHHGGGSSEEEEEEEESS--CHHH----HHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred eeec-cceehhheeccCceEEEEEeccCCCcchH----HHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 4567 77899999999988999995 565443 3444454 23345888888876 46789999999
Q ss_pred -CCCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 136 -VVLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 136 -~~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
..+|.+++|. ++...-++... .+++.+.|.+|++++..+
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~------~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFD------GDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TC------S-S-HHHHHHHHHHTSS-
T ss_pred cccCCEEEEecCCCCCCccCCcc------CCccHHHHHHHHHhCCCe
Confidence 6799999998 33334444221 246899999999998554
No 203
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.87 E-value=0.0047 Score=49.60 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCcEEEEec-CCChhhHHHHHHH---HHHHHHcCC-eEEEEEEc
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHM---SILAKKHIE-TRFVKIHA 123 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l---~~la~~~~~-v~f~~vd~ 123 (210)
+.+.||.|+ ..|++|..+.+.+ ..+.+.+++ +.|+++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 345678888 9999999999876 778888875 67766543
No 204
>PTZ00062 glutaredoxin; Provisional
Probab=96.64 E-value=0.0069 Score=48.73 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=45.0
Q ss_pred hhHHHHHhcCCcEEEEe----c-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHH----hCCCCCCcEEEEEEC
Q 028334 76 KDFFSVVKASDRVVCHF----Y-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAE----RLKIVVLPTLALIKN 146 (210)
Q Consensus 76 ~~f~~~v~~~~~vvV~f----y-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~----~~~i~~vPtll~~~~ 146 (210)
..+.+.+.++.+|+|+- + |||++|+.+...|.+. ++.|..+|+...+.+.. ..|-..+|. +|-+
T Consensus 103 ~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPq--VfI~ 175 (204)
T PTZ00062 103 VEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQ--LYVN 175 (204)
T ss_pred HHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCe--EEEC
Confidence 34445555666666654 3 5899999988888754 56777888887755433 335556676 4567
Q ss_pred CEEEE
Q 028334 147 AKVDD 151 (210)
Q Consensus 147 G~~v~ 151 (210)
|+.++
T Consensus 176 G~~IG 180 (204)
T PTZ00062 176 GELIG 180 (204)
T ss_pred CEEEc
Confidence 87654
No 205
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.47 E-value=0.033 Score=51.37 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=57.9
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEE-CCEEE-EEEeccc
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIK-NAKVD-DYVVGFD 157 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~-~G~~v-~~~~G~~ 157 (210)
.++.|+ +.|..|..+...|++++.--+.+++...|......+++.|++..+|++.+++ +|+.. -+|.|..
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecC
Confidence 566677 8899999999999999987666888888988888999999999999999995 66432 4566654
No 206
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.19 E-value=0.087 Score=37.26 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred eeecCChhhHHHHHh-cCCcEEEEec-CCChhhHHHHHHHHHHHHHc-CCeEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 69 YSEIQAEKDFFSVVK-ASDRVVCHFY-RENWPCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 69 v~~i~t~~~f~~~v~-~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~-~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
+..|.+.+++...+. ....+||-|+ .--+ .....|.++|..+ ....|+ +...+.+...+++ ..|++++|+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~---~~~~~~~~~~~~~-~~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFF---ATFDSKVAKKLGL-KMNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEE---EECcHHHHHHcCC-CCCcEEEeC
Confidence 456767788888887 6666666666 5444 3456788888888 457885 3344456777877 479999996
Q ss_pred C-CEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 146 N-AKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 146 ~-G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
+ ......+. +| .++.+.|..|+..+
T Consensus 75 ~~~e~~~~y~-----~g--~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEPVTIP-----DK--PYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCcccC-----CC--CCCHHHHHHHHHHh
Confidence 5 32222231 21 23789999999865
No 207
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=95.90 E-value=0.094 Score=40.90 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=24.7
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETR 117 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~ 117 (210)
|..|+ .-||.|-...+.|.++.+.++++.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~ 31 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVE 31 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 56677 999999999999999999996633
No 208
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.88 E-value=0.11 Score=36.97 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=71.0
Q ss_pred eeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCC-eEEEEEEcCC--ChhHHHhCCCC----CCc-
Q 028334 69 YSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIE-TRFVKIHAEK--SPFLAERLKIV----VLP- 139 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~f~~vd~~~--~~~l~~~~~i~----~vP- 139 (210)
+..|.+..+|...+.....|+|.|. +.-..- .....|.++|+...+ -.++-||+.. ...+++.+.+. .-|
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 3456678999999988888999888 554443 334588888888777 6778888876 57899999988 566
Q ss_pred EEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 140 TLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 140 tll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
++..|++|..-.-+.... +...+..||+
T Consensus 82 ~LkHYKdG~fHkdYdR~~--------t~kSmv~Flr 109 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQL--------TFKSMVAFLR 109 (112)
T ss_pred hhhcccCCCccccccchh--------hHHHHHHHhh
Confidence 567788997655443333 5666666664
No 209
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.71 E-value=0.073 Score=41.08 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECC-EEEEEEecccCCCCCCCCCHHHHHHHHHHCC
Q 028334 101 VMDKHMSILAKKHIE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNA-KVDDYVVGFDELGGTDEFSTEELEERLAKAQ 178 (210)
Q Consensus 101 ~~~~~l~~la~~~~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G-~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~ 178 (210)
.....|.++|+.+.+ +.|+.+. .+.+++.+++.. |++++|+.+ +....+.|. .++.+.|..|+..+.
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-------~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGD-------KFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSS-------TTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccc-------cCCHHHHHHHHHHhc
Confidence 345688999999885 8998776 566899999988 999999874 333445554 247999999999876
No 210
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.063 Score=37.98 Aligned_cols=70 Identities=17% Similarity=0.065 Sum_probs=46.2
Q ss_pred HHHhcCCcEEEEec--CC---ChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCC-CCCCcEE-EEEECCEEEEE
Q 028334 80 SVVKASDRVVCHFY--RE---NWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLK-IVVLPTL-ALIKNAKVDDY 152 (210)
Q Consensus 80 ~~v~~~~~vvV~fy--~w---C~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~-i~~vPtl-l~~~~G~~v~~ 152 (210)
+...++.+|+++.- |. |+.+.....+|.. +.-+.|..+|+-.++++.+... ...+||+ -+|-+|+.++.
T Consensus 9 ~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~----~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG 84 (105)
T COG0278 9 QKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSA----CGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGG 84 (105)
T ss_pred HHHhhcCceEEEecCCCCCCCCCccHHHHHHHHH----cCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEecc
Confidence 33344455666553 44 6655555444433 2228999999999988877665 4689988 78889988764
Q ss_pred E
Q 028334 153 V 153 (210)
Q Consensus 153 ~ 153 (210)
.
T Consensus 85 ~ 85 (105)
T COG0278 85 C 85 (105)
T ss_pred H
Confidence 4
No 211
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.24 Score=46.29 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=64.6
Q ss_pred ChhhHHHHHhcCCcEEEEec-CCChhhHHHHHH-H--HHHHHHcC-CeEEEEEEcCCChhHHHhC--------CCCCCcE
Q 028334 74 AEKDFFSVVKASDRVVCHFY-RENWPCKVMDKH-M--SILAKKHI-ETRFVKIHAEKSPFLAERL--------KIVVLPT 140 (210)
Q Consensus 74 t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~-l--~~la~~~~-~v~f~~vd~~~~~~l~~~~--------~i~~vPt 140 (210)
+.+.|..+-...++|+|-.. +||-=|+.|... | .++|.-.. ++.-++||.++.|++-+.| |--+.|-
T Consensus 32 ~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 32 GEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred CHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 46778888889999999999 999999999853 2 34444433 2778899999988877665 3679996
Q ss_pred EEEE-ECCEEEEEEecccC
Q 028334 141 LALI-KNAKVDDYVVGFDE 158 (210)
Q Consensus 141 ll~~-~~G~~v~~~~G~~~ 158 (210)
.+|. .+|++....+-+.+
T Consensus 112 tVfLTPd~kPFfagTY~P~ 130 (667)
T COG1331 112 TVFLTPDGKPFFAGTYFPK 130 (667)
T ss_pred eEEECCCCceeeeeeecCC
Confidence 6665 79999876665554
No 212
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.89 E-value=0.36 Score=34.22 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=59.9
Q ss_pred eecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcC-CeEEEEEEcCCChhHHHhCCCCCCcEEEEEECC
Q 028334 70 SEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHI-ETRFVKIHAEKSPFLAERLKIVVLPTLALIKNA 147 (210)
Q Consensus 70 ~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~-~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G 147 (210)
.+|.+.+++...+...+.+||-|+ .--+ .....+.++|..+. +..|+. .....+...+++ .|++++|+..
T Consensus 3 ~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~~~~~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 3 VELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAH---TSDKQLLEKYGY--GEGVVLFRPP 74 (104)
T ss_pred cccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEE---EChHHHHHhcCC--CCceEEEech
Confidence 456677788887877777777676 5443 35667888888874 478853 333466788888 6888888421
Q ss_pred E-------EEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 148 K-------VDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 148 ~-------~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
. ....+.|- ++.+.|..|+..+
T Consensus 75 ~~~~k~de~~~~y~g~--------~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDGD--------LDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccCc--------CCHHHHHHHHHhh
Confidence 1 11112232 3688999999764
No 213
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=94.84 E-value=0.15 Score=39.89 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=21.6
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIE 115 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~ 115 (210)
+|. |.|+.|-.+.|.|.++..+|++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 588 9999999999999999999986
No 214
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.51 E-value=0.077 Score=40.45 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=36.7
Q ss_pred CChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh----HHHhCCC----CCCcEEEEEECCEEEEEE
Q 028334 95 ENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF----LAERLKI----VVLPTLALIKNAKVDDYV 153 (210)
Q Consensus 95 wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~----l~~~~~i----~~vPtll~~~~G~~v~~~ 153 (210)
+|++|..+...|+.+ ++.|-.+|++.++. +.+.++- ..+|.+ |-+|+.++..
T Consensus 15 t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV--FI~G~~IGG~ 74 (147)
T cd03031 15 TFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV--FVDGRYLGGA 74 (147)
T ss_pred cChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE--EECCEEEecH
Confidence 899999999888664 57888899987754 3344454 577774 4578766533
No 215
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.14 E-value=0.14 Score=39.21 Aligned_cols=42 Identities=10% Similarity=-0.030 Sum_probs=31.6
Q ss_pred cCCcEEEEec--CCChhhHHH-HHHHHHHHHHcC--Ce-EEEEEEcCC
Q 028334 84 ASDRVVCHFY--RENWPCKVM-DKHMSILAKKHI--ET-RFVKIHAEK 125 (210)
Q Consensus 84 ~~~~vvV~fy--~wC~~C~~~-~~~l~~la~~~~--~v-~f~~vd~~~ 125 (210)
.++.+||.|| .||+.|... .+.|.+...++. ++ .++.|..+.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 4456777777 899999998 888988888875 35 476666654
No 216
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.69 E-value=0.13 Score=37.35 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=26.2
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHcC
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKHI 114 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~~ 114 (210)
+.++|.|+ |.|+-|......++.+..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 34789999 999999999999999999886
No 217
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.32 E-value=0.14 Score=36.39 Aligned_cols=82 Identities=18% Similarity=0.100 Sum_probs=48.0
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC----hhHHHhCCCCCCcEEEEE-ECCEEEEEEecccCCCCCC
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS----PFLAERLKIVVLPTLALI-KNAKVDDYVVGFDELGGTD 163 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~----~~l~~~~~i~~vPtll~~-~~G~~v~~~~G~~~~g~~~ 163 (210)
..|+ |+|+.|+.....|++. ++.|-.+|+.+. ..+..-++-.+.+.--++ ..|...... |... ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l-~~~~---~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKL-GLAD---KD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHc-CCcc---cc
Confidence 3466 9999999988777653 556666666543 233443444444444344 355433222 2111 13
Q ss_pred CCCHHHHHHHHHHCCCc
Q 028334 164 EFSTEELEERLAKAQVI 180 (210)
Q Consensus 164 ~~~~~~L~~~L~~~~~l 180 (210)
.++.+++.++|.++..+
T Consensus 73 ~ls~~e~~~~l~~~p~L 89 (105)
T cd02977 73 ELSDEEALELMAEHPKL 89 (105)
T ss_pred CCCHHHHHHHHHhCcCe
Confidence 45788899999888755
No 218
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=92.16 E-value=0.61 Score=30.28 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=35.4
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCCCCCcEEEEEECCEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
.|+ +||+.|++..-.|....-. +.++.++.... +.+.+..+...+|++.. .+|..
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 456 9999999987666544222 45566665433 45666667889999843 34654
No 219
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.10 E-value=0.15 Score=36.82 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=48.3
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh----hHHHhCCCCCCcEEEEEE-CCEEEEEEecccCCCCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP----FLAERLKIVVLPTLALIK-NAKVDDYVVGFDELGGTDE 164 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~----~l~~~~~i~~vPtll~~~-~G~~v~~~~G~~~~g~~~~ 164 (210)
.|+ ++|+.|+.....|++. ++.|-.+|+...+ ++..-++..++|.--++. .|.... -.|.. +....
T Consensus 3 iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~-~l~~~--~~~~~ 74 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYR-ELGLK--DKLPS 74 (111)
T ss_pred EEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHH-hCCcc--ccccc
Confidence 455 9999999988777553 5667777766543 333334444566555553 554222 11222 11234
Q ss_pred CCHHHHHHHHHHCCCc
Q 028334 165 FSTEELEERLAKAQVI 180 (210)
Q Consensus 165 ~~~~~L~~~L~~~~~l 180 (210)
++.+++..+|.++..|
T Consensus 75 ~s~~e~~~~l~~~p~L 90 (111)
T cd03036 75 LSEEEALELLSSDGML 90 (111)
T ss_pred CCHHHHHHHHHhCcCe
Confidence 5678888888888755
No 220
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.00 E-value=0.58 Score=31.19 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=44.0
Q ss_pred EEEec-C-CChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 89 VCHFY-R-ENWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 89 vV~fy-~-wC~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
.+.+| . ..+.++.....+.++..++.+ ..+=-||+.++|.++..++|-++||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 34455 4 447888888888888887643 8888899999999999999999999653
No 221
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.73 E-value=2.5 Score=27.83 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=29.6
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC----hhHHHhCCCCCCcEEEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS----PFLAERLKIVVLPTLAL 143 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~----~~l~~~~~i~~vPtll~ 143 (210)
.++ ++|+.|++..-.|... ++.|-.+++... +.+.+..+...+|++..
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred EecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 455 8999999877666554 333433444432 33444456678999743
No 222
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=91.18 E-value=2.5 Score=31.50 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=40.3
Q ss_pred hhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCE
Q 028334 76 KDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 76 ~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~ 148 (210)
.++.....+.+.++|.=+ +... -+.....+.++...-.. ..+.-+|.+.++|+|+.+|++++.+++.
T Consensus 15 k~l~~~a~~~g~~~VlRG~~~~~-~~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 15 KQLLDQAEALGAPLVIRGLLDNG-FKATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHhCCeEEEeCCCCCC-HHHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCCC
Confidence 344444444444555444 4332 24444455555443322 3445568899999999999999998774
No 223
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=90.17 E-value=0.92 Score=36.51 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=59.0
Q ss_pred ChhhHHHHHhcCCcEEEEec-CCCh-hhHHHHHHHHHHHHHcC-----CeE--EEEEEcCCC-hhHHHhCCC-CCCcEEE
Q 028334 74 AEKDFFSVVKASDRVVCHFY-RENW-PCKVMDKHMSILAKKHI-----ETR--FVKIHAEKS-PFLAERLKI-VVLPTLA 142 (210)
Q Consensus 74 t~~~f~~~v~~~~~vvV~fy-~wC~-~C~~~~~~l~~la~~~~-----~v~--f~~vd~~~~-~~l~~~~~i-~~vPtll 142 (210)
.++.|...-.++++++|.|. +.|+ -|-.+...|..+.++.. +++ |+.+|.+.. +...+.|.. ...|.
T Consensus 56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~-- 133 (207)
T COG1999 56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPR-- 133 (207)
T ss_pred CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCC--
Confidence 45556666567788999999 9997 79888887777766644 244 455554433 667777776 33332
Q ss_pred EEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCcc
Q 028334 143 LIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIF 181 (210)
Q Consensus 143 ~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l~ 181 (210)
+.|... +.+.++...+.+++..
T Consensus 134 ----------~~~ltg-------~~~~~~~~~k~~~V~~ 155 (207)
T COG1999 134 ----------WIGLTG-------TPEQIEEVAKAYGVFY 155 (207)
T ss_pred ----------eeeeeC-------CHHHHHHHHHHhccee
Confidence 233331 4788888999988883
No 224
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=90.10 E-value=1.2 Score=28.66 Aligned_cols=53 Identities=6% Similarity=0.045 Sum_probs=29.2
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCE
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~ 148 (210)
++ ++|++|++..-.|....-. +..+.++........+..+-..+|++. ..+|.
T Consensus 4 y~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~-~~~~~ 57 (71)
T cd03037 4 YIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE-KDDGS 57 (71)
T ss_pred EecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE-eCCCe
Confidence 44 9999999877666443222 233344433332333444556789874 33454
No 225
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=89.48 E-value=6 Score=28.17 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=46.8
Q ss_pred eeecCChhhHHHHHhcC-CcEEEEec-CCChhhHHHHHHHHHHHHHc-CCeEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 69 YSEIQAEKDFFSVVKAS-DRVVCHFY-RENWPCKVMDKHMSILAKKH-IETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 69 v~~i~t~~~f~~~v~~~-~~vvV~fy-~wC~~C~~~~~~l~~la~~~-~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
+.+|.+.+++...+... ..+||-|+ .--+ .....+.++|..+ ....|+. .....+...+++. .|.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~---t~~~~~~~~~~~~-~~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHH---TFDSEIFKSLKVS-PGQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEE---EChHHHHHhcCCC-CCceEEEC
Confidence 45676788888887776 56666566 5433 3556788888888 4488853 3334667788875 57777773
No 226
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=88.79 E-value=1.4 Score=30.42 Aligned_cols=69 Identities=23% Similarity=0.162 Sum_probs=50.9
Q ss_pred EEEEec--CCChhhHHHHHHHHHHHHHc-CC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEeccc
Q 028334 88 VVCHFY--RENWPCKVMDKHMSILAKKH-IE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFD 157 (210)
Q Consensus 88 vvV~fy--~wC~~C~~~~~~l~~la~~~-~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~ 157 (210)
.++..| ..-+.++.....+.++...+ ++ ..+=-||+.++|.++..++|-++||++=. .-..+.+++|-.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGdl 76 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGDL 76 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeeccc
Confidence 344444 56677888888888887764 44 77778999999999999999999995433 344566777744
No 227
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=88.52 E-value=0.99 Score=28.03 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=33.4
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh--hHHHhCCCCCCcEEEEEECCEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP--FLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~--~l~~~~~i~~vPtll~~~~G~~ 149 (210)
.|+ ++|+.|....-.+....-. +....++..... .+.+..+-..+|++.. +|..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 356 9999999888777655322 344444443332 2455677889998754 4543
No 228
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=88.47 E-value=5.7 Score=35.40 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCcEEEEec-CCChhhHHHHH-HH-HHHHHH-cC-CeEEEEEEcCC--ChhHHHhCCCCCCcEEEEE-ECCEEEEEEecc
Q 028334 85 SDRVVCHFY-RENWPCKVMDK-HM-SILAKK-HI-ETRFVKIHAEK--SPFLAERLKIVVLPTLALI-KNAKVDDYVVGF 156 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~-~l-~~la~~-~~-~v~f~~vd~~~--~~~l~~~~~i~~vPtll~~-~~G~~v~~~~G~ 156 (210)
.+.++|.|- ........|.. .| ...... .. .+.-++|.... +..+..-|.+..+|+++|+ ..|..+..+.|+
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeecc
Confidence 334666565 66677777763 23 222222 11 25555665543 3567889999999999999 599999999998
Q ss_pred c
Q 028334 157 D 157 (210)
Q Consensus 157 ~ 157 (210)
.
T Consensus 98 v 98 (506)
T KOG2507|consen 98 V 98 (506)
T ss_pred c
Confidence 8
No 229
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=88.26 E-value=4 Score=26.11 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=32.3
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCCCCCcEEEEEECC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKIVVLPTLALIKNA 147 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i~~vPtll~~~~G 147 (210)
.|+ ++|+.|+...-.++...-. ..+..++.... +.+.+......+|++. .+|
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~ 56 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRD 56 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECC
Confidence 466 9999999987766544322 33444454433 4555666778999763 355
No 230
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=87.87 E-value=9.4 Score=28.45 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=52.2
Q ss_pred ceeecCChhhHHHHHh-cCCcEEEEecCCChhh--HHHHHHHHHHHHH--cCCeEEEEEEcCCChhH---HHhC--C-CC
Q 028334 68 DYSEIQAEKDFFSVVK-ASDRVVCHFYRENWPC--KVMDKHMSILAKK--HIETRFVKIHAEKSPFL---AERL--K-IV 136 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~-~~~~vvV~fy~wC~~C--~~~~~~l~~la~~--~~~v~f~~vd~~~~~~l---~~~~--~-i~ 136 (210)
-+.++.|.++....+. ..+..+|..-+-|| | ...+|........ -| -+++.|=+....+. ++.| + -.
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlVvVNSVCG-CAag~ARPa~~~al~~~kkP-D~lvTVFAGqDkEAt~~aR~yf~~~pP 94 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLVVVNSVCG-CAAGNARPAAAMALQNDKKP-DHLVTVFAGQDKEATAKAREYFEPYPP 94 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEEEEE-SSH-HHHHTHHHHHHHHHHHSS---SEEEEEETTTSHHHHHHHHHTSTTS--
T ss_pred CccccCCHHHHHHHHhCCCCcEEEEEecccc-ccccccCHHHHHHHhCCCCC-CceEEeccCCCHHHHHHHHHhcCCCCC
Confidence 4778889999999998 44444443337776 4 2345555443332 23 33444434443222 2222 2 24
Q ss_pred CCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 137 VLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 137 ~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
+=|++.+||+|++++-+.--. +.+.+.+.|..-|.
T Consensus 95 SSPS~ALfKdGelvh~ieRh~----IEGr~a~~Ia~~L~ 129 (136)
T PF06491_consen 95 SSPSIALFKDGELVHFIERHH----IEGRPAEEIAENLQ 129 (136)
T ss_dssp -SSEEEEEETTEEEEEE-GGG----TTTS-HHHHHHHHH
T ss_pred CCchheeeeCCEEEEEeehhh----cCCCCHHHHHHHHH
Confidence 678999999999998776544 23345666655554
No 231
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=87.46 E-value=1.9 Score=35.76 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=43.2
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEE
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~ 145 (210)
....+ +..++ ...+++.|++.. .||+.|....=.|--...+|.++.+.....+.. -.-..+||+.|..
T Consensus 45 ~~~kv-sn~d~---~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~------d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 45 NFFKV-SNQDL---APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY------DNYPNTPTLIFNN 113 (249)
T ss_pred ceeee-cCccc---CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc------cCCCCCCeEEEec
Confidence 55556 33332 355666788888 999999988877777777787763333332221 1125899988874
No 232
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=87.43 E-value=3.3 Score=29.94 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=40.3
Q ss_pred hHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEEC
Q 028334 77 DFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKN 146 (210)
Q Consensus 77 ~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~ 146 (210)
++.....+.+.++|.=+ +.- .-+.....+.++...-+.. ..+.-+|.+.++|+|+.+||+++-++
T Consensus 15 ~l~~~a~~~~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 15 NLLKQAERAGVVVVFRGFPDG-SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHhCCcEEEEECCCCC-CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 33444444444555444 443 4455555556665554333 44555677899999999999999887
No 233
>PRK09301 circadian clock protein KaiB; Provisional
Probab=87.39 E-value=1.9 Score=30.77 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=60.3
Q ss_pred EEEEec--CCChhhHHHHHHHHHHHHHc-CC-eEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCC
Q 028334 88 VVCHFY--RENWPCKVMDKHMSILAKKH-IE-TRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTD 163 (210)
Q Consensus 88 vvV~fy--~wC~~C~~~~~~l~~la~~~-~~-v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~ 163 (210)
.++..| ..-+..+.....+.++...+ ++ ..+=-||+.++|.++..++|-++||++=. .-..+.+++|-.
T Consensus 7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDl------ 79 (103)
T PRK09301 7 YILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDL------ 79 (103)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeeccc------
Confidence 444545 56777888888888887764 44 77778999999999999999999995433 345677788744
Q ss_pred CCCHHHHHHHHHHCCCc
Q 028334 164 EFSTEELEERLAKAQVI 180 (210)
Q Consensus 164 ~~~~~~L~~~L~~~~~l 180 (210)
...++.|...++.
T Consensus 80 ----sd~~kVL~~L~l~ 92 (103)
T PRK09301 80 ----SDREKVLIGLDLL 92 (103)
T ss_pred ----ccHHHHHHhcCCC
Confidence 4556677776665
No 234
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=86.48 E-value=1.6 Score=27.91 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=34.2
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC----CChhHHHhCCCCCCcEEEEEECCE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE----KSPFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~----~~~~l~~~~~i~~vPtll~~~~G~ 148 (210)
.|+ ++|++|+...-.|....-. .....++.. ..+.+.+..+...+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 355 9999999988777655332 334445542 2345666677789999864 3443
No 235
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=85.92 E-value=9.6 Score=26.60 Aligned_cols=59 Identities=5% Similarity=0.020 Sum_probs=38.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEE-EEEeccc
Q 028334 88 VVCHFYRENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD-DYVVGFD 157 (210)
Q Consensus 88 vvV~fy~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v-~~~~G~~ 157 (210)
.++.|.+.-..|..+...+++++.--+.+.+...+... ..|++.+..+|+.. -++.|..
T Consensus 22 ~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 22 ELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIP 81 (94)
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecC
Confidence 34444433399999999999999987666664433221 47999998877332 3555554
No 236
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=85.34 E-value=8 Score=25.17 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=36.7
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCCCCCcEEEEEECCEEEE
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i~~vPtll~~~~G~~v~ 151 (210)
++ ++|+.|++..-.+....- ...+..++.... +.+.+..+-..+|++. .+|..+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~ 58 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT 58 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe
Confidence 56 999999997755543321 255566665553 5667777888999986 6676443
No 237
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=85.16 E-value=1.6 Score=31.53 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=46.6
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh----HHHhCCCCCC-cEEEEEECCEEEEEEecccCCCCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF----LAERLKIVVL-PTLALIKNAKVDDYVVGFDELGGTDE 164 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~----l~~~~~i~~v-Ptll~~~~G~~v~~~~G~~~~g~~~~ 164 (210)
.|+ ++|+.|+.....|++ .++.|..+|+.+.+. +..-+...+. |.-++=+.|...... |... ....
T Consensus 3 iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l-~~~~--~~~~ 74 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRAL-NTSN--TFLD 74 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhC-Cchh--hccc
Confidence 456 999999998877766 256777777766532 2222222232 222333566544332 2110 0134
Q ss_pred CCHHHHHHHHHHCCCc
Q 028334 165 FSTEELEERLAKAQVI 180 (210)
Q Consensus 165 ~~~~~L~~~L~~~~~l 180 (210)
++.+++..+|.++..+
T Consensus 75 ls~~e~~~~i~~~p~L 90 (117)
T TIGR01617 75 LSDKEALELLAEDPAL 90 (117)
T ss_pred CCHHHHHHHHHhCcce
Confidence 5778888888887754
No 238
>PRK12559 transcriptional regulator Spx; Provisional
Probab=84.68 E-value=0.81 Score=34.08 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=42.7
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh----hHHHhCCCCCCcEEEEE-ECCEEEEEEecccCCCCCC
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP----FLAERLKIVVLPTLALI-KNAKVDDYVVGFDELGGTD 163 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~----~l~~~~~i~~vPtll~~-~~G~~v~~~~G~~~~g~~~ 163 (210)
..|+ |+|+.|+.....|+.- ++.|-.+|+.+.+ .+..-+...+.|.--++ +.|..... .|... .
T Consensus 3 ~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~-l~~~~----~ 72 (131)
T PRK12559 3 VLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQD-LNINI----E 72 (131)
T ss_pred EEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHh-CCCCc----c
Confidence 3455 9999999977666543 4555555555432 23333333334433334 35543322 12221 2
Q ss_pred CCCHHHHHHHHHHCCCc
Q 028334 164 EFSTEELEERLAKAQVI 180 (210)
Q Consensus 164 ~~~~~~L~~~L~~~~~l 180 (210)
..+.+++..+|.++..|
T Consensus 73 ~ls~~e~i~ll~~~P~L 89 (131)
T PRK12559 73 ELSLNEFYKLIIEHPLM 89 (131)
T ss_pred cCCHHHHHHHHHhCcce
Confidence 34667777777777644
No 239
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=84.18 E-value=4.8 Score=25.88 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=33.9
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC----ChhHHHhCCCCCCcEEEEEECCE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK----SPFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~----~~~l~~~~~i~~vPtll~~~~G~ 148 (210)
.|+ ++|+.|+...-.+....-. +....++... .+.+.+......+|++.. +|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~ 60 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGF 60 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCE
Confidence 456 9999999877666655332 3444555432 256666677789999853 454
No 240
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=82.97 E-value=1.8 Score=28.40 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=28.5
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALI 144 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~ 144 (210)
.|+ ++|++|+...-.|....-. ..+..++....+.+ ..-+...+|++..=
T Consensus 4 Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 456 9999999988666544222 22333333222233 33456789998653
No 241
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.76 E-value=15 Score=33.49 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=43.1
Q ss_pred cEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEE-EEEeccc
Q 028334 87 RVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD-DYVVGFD 157 (210)
Q Consensus 87 ~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v-~~~~G~~ 157 (210)
+|.+.++ +.|..|..+...+++++.--+.+++-..+.. ...|++.+..+|+-. -+|.|..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P 81 (517)
T PRK15317 20 PIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIP 81 (517)
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecC
Confidence 3667777 8899999999999999998776666442211 348999998876543 4555654
No 242
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=82.56 E-value=2.2 Score=31.71 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=40.8
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChh----HHHhCCCCCCcEEEEE-ECCEEEEEEecccCCCCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPF----LAERLKIVVLPTLALI-KNAKVDDYVVGFDELGGTDE 164 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~----l~~~~~i~~vPtll~~-~~G~~v~~~~G~~~~g~~~~ 164 (210)
.|+ |+|+.|+.....|.+. ++.|-.+|+.+.+. +..-+...+.|.--++ +.|...... |.. .+.
T Consensus 4 iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l-~~~----~~~ 73 (131)
T PRK01655 4 LFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKL-NVD----VES 73 (131)
T ss_pred EEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhC-CCC----ccc
Confidence 455 9999999987666443 56666677655432 2222222222322233 344332221 211 123
Q ss_pred CCHHHHHHHHHHCCCc
Q 028334 165 FSTEELEERLAKAQVI 180 (210)
Q Consensus 165 ~~~~~L~~~L~~~~~l 180 (210)
++.+++..+|.++..+
T Consensus 74 ls~~e~i~ll~~~p~L 89 (131)
T PRK01655 74 LSLQDLIKLISDNPGL 89 (131)
T ss_pred CCHHHHHHHHHhCcce
Confidence 4556666777776644
No 243
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=82.11 E-value=1.9 Score=30.73 Aligned_cols=78 Identities=6% Similarity=-0.055 Sum_probs=44.1
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-------hHHHhCCCCCCcEEEEEECCEEEEEEecccCCCC
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-------FLAERLKIVVLPTLALIKNAKVDDYVVGFDELGG 161 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-------~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~ 161 (210)
..|+ |+|+.|+.....|.+- ++.|-.+|+.+.| .+...+|+ .-++=+.|...... |.. .
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p~s~~eL~~~l~~~g~----~~li~~~~~~yk~l-~l~---~ 68 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDGLDAATLERWLAKVGW----ETLLNKRGTTWRKL-DDA---Q 68 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCCCCHHHHHHHHHHhCh----HHHHccCchHHHhC-Chh---h
Confidence 3466 9999999987766543 4555566655442 34444552 22232455433322 221 0
Q ss_pred CCCCCHHHHHHHHHHCCCc
Q 028334 162 TDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 162 ~~~~~~~~L~~~L~~~~~l 180 (210)
.+.++.+++..+|.+|..|
T Consensus 69 ~~~~s~~e~~~~l~~~p~L 87 (105)
T cd03035 69 KAALDAAKAIALMLEHPSL 87 (105)
T ss_pred hccCCHHHHHHHHHhCcCe
Confidence 1234678888888888765
No 244
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=79.71 E-value=4.4 Score=31.47 Aligned_cols=87 Identities=22% Similarity=0.174 Sum_probs=50.8
Q ss_pred hhhHHHHHhcCCcEEEEec-CCCh-hhHHHHHHHHHHHHHcC----CeEEEEEEcCCC---hhHHHhCCCCCCcEEEEEE
Q 028334 75 EKDFFSVVKASDRVVCHFY-RENW-PCKVMDKHMSILAKKHI----ETRFVKIHAEKS---PFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 75 ~~~f~~~v~~~~~vvV~fy-~wC~-~C~~~~~~l~~la~~~~----~v~f~~vd~~~~---~~l~~~~~i~~vPtll~~~ 145 (210)
++.+...-..++.++|.|. +.|+ .|-.+...|.++.+.++ .+.|+.|.++.. ++..++|.-.--|.+
T Consensus 42 G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~~~~---- 117 (174)
T PF02630_consen 42 GKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFGPDF---- 117 (174)
T ss_dssp SSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHTTTC----
T ss_pred CCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcCCCc----
Confidence 3334333346777899998 9995 78877777766655432 377777777654 444444322111211
Q ss_pred CCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 146 NAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 146 ~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
..+.| ..+.++...+.+++.
T Consensus 118 -----~~ltg----------~~~~i~~l~~~~~v~ 137 (174)
T PF02630_consen 118 -----IGLTG----------SREEIEELAKQFGVY 137 (174)
T ss_dssp -----EEEEE----------EHHHHHHHHHHCTHC
T ss_pred -----ceeEe----------CHHHHHHHHHHHHhh
Confidence 11223 357788888888765
No 245
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.67 E-value=3.2 Score=33.88 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=28.6
Q ss_pred HHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHCC
Q 028334 129 LAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQ 178 (210)
Q Consensus 129 l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~ 178 (210)
.+.++||+++|||+| +|+ ..+.|.. +.+.+...|.+.-
T Consensus 176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq--------~~~v~~~al~~~~ 213 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGK--YAVSGAQ--------PYDVLEDALRQLL 213 (225)
T ss_pred HHHHCCCccCceEEE--cCc--EeecCCC--------CHHHHHHHHHHHH
Confidence 467899999999998 332 3456777 6888888887643
No 246
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.06 E-value=6.5 Score=26.44 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=35.8
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC--------------Chh--HHHhCCCCCCcEEEEEECCEEEE
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK--------------SPF--LAERLKIVVLPTLALIKNAKVDD 151 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~--------------~~~--l~~~~~i~~vPtll~~~~G~~v~ 151 (210)
+.|+ ..||.|..+...|+++.-.| =.|++.. .+. -.+..|--++|++++ .+|++|.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y-----d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY-----DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc-----eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 5688 99999998887777663333 3333332 122 245677789999766 5666554
No 247
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=77.85 E-value=0.91 Score=31.04 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHHHHcCC--eEEEEEEcCCChhHHHhCCCCCCcEEE
Q 028334 96 NWPCKVMDKHMSILAKKHIE--TRFVKIHAEKSPFLAERLKIVVLPTLA 142 (210)
Q Consensus 96 C~~C~~~~~~l~~la~~~~~--v~f~~vd~~~~~~l~~~~~i~~vPtll 142 (210)
-+.+......+..+...+-+ ..+=-||+.++|.++..++|-++||++
T Consensus 8 ~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 8 TPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp HHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 34567777888888887543 888999999999999999999999964
No 248
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.52 E-value=30 Score=31.58 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=43.3
Q ss_pred cEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEE-EEEEeccc
Q 028334 87 RVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKV-DDYVVGFD 157 (210)
Q Consensus 87 ~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~-v~~~~G~~ 157 (210)
+|.+.++ +.|..|..+...+++++..-+.+.+...+... ...|++.++++|+- --+|.|..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P 82 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIP 82 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecC
Confidence 3666666 77999999999999999987767665433221 35699999887753 24556654
No 249
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=77.42 E-value=7.5 Score=26.37 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=32.7
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCCCCCcEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKIVVLPTLAL 143 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i~~vPtll~ 143 (210)
+..|+ +.|+.|+...-.+....-. +.++.++.... +.+.+..+...+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 34455 8999999877665544222 44555665443 33566666788999863
No 250
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=3.6 Score=36.11 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=48.1
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
+=-|+ -.|..|-..-..|.-++--.|+++-..||-...++-...-+|.++||++ -||+..
T Consensus 120 FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvf--lnGe~f 180 (520)
T COG3634 120 FETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVF--LNGEEF 180 (520)
T ss_pred EEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEE--Ecchhh
Confidence 33344 7899999999999988888888999999988776667788999999954 467543
No 251
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.07 E-value=12 Score=23.67 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=33.4
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC----ChhHHHhCCCCCCcEEEEEECCEEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK----SPFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~----~~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
.|+ +.|+.|....-.+....-. .....++... .+.+.+......+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 466 9999999877666554322 3444555422 244555556778999864 46543
No 252
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=76.60 E-value=5 Score=28.86 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=45.1
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh----hHHHhCCCCCCcEEEEE-ECCEEEEEEecccCCCCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP----FLAERLKIVVLPTLALI-KNAKVDDYVVGFDELGGTDE 164 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~----~l~~~~~i~~vPtll~~-~~G~~v~~~~G~~~~g~~~~ 164 (210)
.|+ ++|+.|+.....|++. ++.|-.+|+.+.+ .+..-+...+.|.--++ +.|...... |... ..
T Consensus 4 iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l-~~~~----~~ 73 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNL-NIDI----DE 73 (115)
T ss_pred EEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHc-CCCc----cc
Confidence 455 9999999988777653 4566666665442 23332333333433344 455443322 2221 24
Q ss_pred CCHHHHHHHHHHCCCc
Q 028334 165 FSTEELEERLAKAQVI 180 (210)
Q Consensus 165 ~~~~~L~~~L~~~~~l 180 (210)
++.+++..+|.++..|
T Consensus 74 ls~~e~i~~l~~~p~L 89 (115)
T cd03032 74 LSLSELIRLISEHPSL 89 (115)
T ss_pred CCHHHHHHHHHhChhh
Confidence 4677778888887755
No 253
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=75.68 E-value=4.7 Score=31.15 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=24.0
Q ss_pred hHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 128 FLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 128 ~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
..+.++||.++||+++ +|+ .+.|.. ..+.|+..|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~--------~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQD--------RLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccc--------cHHHHHHHh
Confidence 3566889999999988 775 345766 456666554
No 254
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=75.48 E-value=15 Score=23.96 Aligned_cols=54 Identities=6% Similarity=0.129 Sum_probs=33.8
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC----CChhHHHhCCCCCCcEEEEEECCEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE----KSPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~----~~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
.|+ +.|+.|+...-.+..+.-. ..++.++.. ..+.+.+--....+|++. .+|..
T Consensus 3 ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 3 LYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 455 8899998876555444322 445566553 224566667778999985 47754
No 255
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=73.67 E-value=0.69 Score=39.33 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=56.7
Q ss_pred CCcEEEEec-CCChhhHHHHHHHHHHHHHcCCe-EEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCC
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHMSILAKKHIET-RFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGT 162 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v-~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~ 162 (210)
...|-+.|| .||+..+...|.+.-....|+.+ .|..=+...-+.+...|++.+.|++++.. -..-.++-|..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n-~t~~~~~~~~r----- 149 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN-QTCPASYRGER----- 149 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec-cccchhhcccc-----
Confidence 344888999 99999999999998888888753 44411122336778899999999987763 23334444544
Q ss_pred CCCCHHHHHHHHHHC
Q 028334 163 DEFSTEELEERLAKA 177 (210)
Q Consensus 163 ~~~~~~~L~~~L~~~ 177 (210)
....|..+..+.
T Consensus 150 ---~l~sLv~fy~~i 161 (319)
T KOG2640|consen 150 ---DLASLVNFYTEI 161 (319)
T ss_pred ---cHHHHHHHHHhh
Confidence 345555555443
No 256
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=73.46 E-value=6.7 Score=30.58 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=25.6
Q ss_pred hhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHH
Q 028334 127 PFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 127 ~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L 174 (210)
...+..+||.++||+++ +|+. .+.|.. +.+.+...|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~--------~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQ--------PPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCC--------CHHHHHHHh
Confidence 34567899999999888 6653 356766 577777665
No 257
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.94 E-value=6.3 Score=32.00 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=26.1
Q ss_pred CcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEE
Q 028334 86 DRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVK 120 (210)
Q Consensus 86 ~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~ 120 (210)
+..++.|+ ..|++|+...+.+.+....++.++++.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~ 120 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL 120 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence 34777788 999999998888888766666554433
No 258
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=71.75 E-value=5.8 Score=22.65 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHCCCcccCC
Q 028334 164 EFSTEELEERLAKAQVIFLEG 184 (210)
Q Consensus 164 ~~~~~~L~~~L~~~~~l~~~~ 184 (210)
.|+.+.|..||..||+..+..
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~ 23 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKS 23 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCC
Confidence 578999999999999995543
No 259
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=70.88 E-value=31 Score=25.40 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEEcCCChh----------HHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHH
Q 028334 102 MDKHMSILAKKHIETRFVKIHAEKSPF----------LAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELE 171 (210)
Q Consensus 102 ~~~~l~~la~~~~~v~f~~vd~~~~~~----------l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~ 171 (210)
+...++.|.+ .++.+.+.+...+|. +.+.-|...+|-+++ +|+++. .|.++ +.++|.
T Consensus 29 ~a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~--~G~YP-------t~eEl~ 95 (123)
T PF06953_consen 29 FAADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK--TGRYP-------TNEELA 95 (123)
T ss_dssp HHHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE--ESS----------HHHHH
T ss_pred HHHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE--ecCCC-------CHHHHH
Confidence 3344444433 369999999988753 334568899997655 999887 45554 689999
Q ss_pred HHHHHC
Q 028334 172 ERLAKA 177 (210)
Q Consensus 172 ~~L~~~ 177 (210)
+|+.-.
T Consensus 96 ~~~~i~ 101 (123)
T PF06953_consen 96 EWLGIS 101 (123)
T ss_dssp HHHT--
T ss_pred HHhCCC
Confidence 998643
No 260
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=70.21 E-value=9.8 Score=30.59 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.0
Q ss_pred cCCChhHHHhCCCCCCcEEEEEECCEEEEEEeccc
Q 028334 123 AEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFD 157 (210)
Q Consensus 123 ~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~ 157 (210)
+.-+|.+.++|+|..+|++++.- +.-...+.|-.
T Consensus 148 v~IDP~lF~~F~I~~VPafVv~C-~~~yD~I~GNI 181 (212)
T PRK13730 148 VQIDPTLFSQYGIRSVPALVVFC-SQGYDIIRGNL 181 (212)
T ss_pred eeECHHHHHhcCCccccEEEEEc-CCCCCEEEecc
Confidence 33468899999999999999973 33334555533
No 261
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=69.42 E-value=6.4 Score=27.91 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=36.7
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCC--CCcEEEE-EECCE
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIV--VLPTLAL-IKNAK 148 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~--~vPtll~-~~~G~ 148 (210)
|| .+|+-|......+..... ...+.|+.+.......+...+++. ...+.++ ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 78 999999999888877722 234777766444444445666654 4554445 46886
No 262
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.38 E-value=8.2 Score=30.89 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=32.6
Q ss_pred hHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 128 FLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 128 ~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
.+++++++.++||+++-+||+..---.| .-+| +.+.+..+|.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g-~y~~-----~~~~~~arl~~~ 208 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTG-AYFG-----SPDAWLARLAQR 208 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCC-cccC-----CcHHHHHHHHHH
Confidence 4678899999999999999987655555 2234 467777777654
No 263
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=68.92 E-value=14 Score=27.90 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=49.1
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCC----CCcEEEEEECCEEEEEEecccCCCCC
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIV----VLPTLALIKNAKVDDYVVGFDELGGT 162 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~----~vPtll~~~~G~~v~~~~G~~~~g~~ 162 (210)
-++.|+ |.|+=|.....+++. .++.+-.+..+.-..+.++|||. +-=|.+ -+|+.+. |-.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy~vE---GHV----- 91 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGYYVE---GHV----- 91 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCEEEe---ccC-----
Confidence 455577 999999998888761 35666666777777788888874 233322 3665544 333
Q ss_pred CCCCHHHHHHHHHHC
Q 028334 163 DEFSTEELEERLAKA 177 (210)
Q Consensus 163 ~~~~~~~L~~~L~~~ 177 (210)
+.+.+.++|.+.
T Consensus 92 ---Pa~aI~~ll~~~ 103 (149)
T COG3019 92 ---PAEAIARLLAEK 103 (149)
T ss_pred ---CHHHHHHHHhCC
Confidence 688899999864
No 264
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=68.75 E-value=6.6 Score=26.49 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCCcEEEEEE-CCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCC
Q 028334 136 VVLPTLALIK-NAKVDDYVVGFDELGGTDEFSTEELEERLAKAQV 179 (210)
Q Consensus 136 ~~vPtll~~~-~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~ 179 (210)
-.-|++++|. +|+.+.++.= ..|+.+.+..+|.++|.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i-------~~w~~d~i~efL~~kgf 77 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINI-------EKWKTDEIEEFLNEKGF 77 (78)
T ss_dssp S---EEEEE-SSS--SEEEE--------SSSSHCHHHHHHHHHT-
T ss_pred CCCCEEEEEcCCCCEEEEEEc-------ccCCHHHHHHHHHHhCC
Confidence 3568999996 8998777532 35789999999998763
No 265
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=67.40 E-value=10 Score=28.13 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=21.4
Q ss_pred EEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC
Q 028334 90 CHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS 126 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~ 126 (210)
..|+ |+|+.|+.....|++- ++.|-.+|+...
T Consensus 3 ~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~ 35 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE 35 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC
Confidence 3456 9999999977555432 466666666544
No 266
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=67.15 E-value=58 Score=26.14 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=51.2
Q ss_pred EEE-ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC------------------hhHHHhCCCCCCcEEEEEECCE
Q 028334 89 VCH-FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS------------------PFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 89 vV~-fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~------------------~~l~~~~~i~~vPtll~~~~G~ 148 (210)
||. |. -.|+.|-.....|.+|+.+ +++.-+...++-. ...+..++...+-|=-++-||.
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 344 44 7899999999999999998 5777777777742 1245667887777777777996
Q ss_pred EEEEEecccCCCCCCCCCHHHHHHHHHHCCCc
Q 028334 149 VDDYVVGFDELGGTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 149 ~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l 180 (210)
.- .+|.. ...+...|.++...
T Consensus 80 ~~--~~g~~---------~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 80 EH--RVGSD---------RAAVEAAIQAARAR 100 (202)
T ss_dssp EE--EETT----------HHHHHHHHHHHHHT
T ss_pred ee--eeccC---------HHHHHHHHHHhhcc
Confidence 43 45554 67778887775433
No 267
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=66.97 E-value=6.5 Score=30.40 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=22.7
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHcC
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKHI 114 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~~ 114 (210)
|.+|+ +.|+.|-...+.|.++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 44566 999999999999999999984
No 268
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=64.19 E-value=10 Score=26.34 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=32.3
Q ss_pred Eec-CCChhhHHHHHHH---HHHHHHcCCeEEEEEEcCCChhHHHhC--------CCCCCcEEEEEECCEEEEEE
Q 028334 91 HFY-RENWPCKVMDKHM---SILAKKHIETRFVKIHAEKSPFLAERL--------KIVVLPTLALIKNAKVDDYV 153 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l---~~la~~~~~v~f~~vd~~~~~~l~~~~--------~i~~vPtll~~~~G~~v~~~ 153 (210)
.+| +.+.-.+.....- ..+... .++.|-.+|++.++...+.+ +-..+|- +|.+|.-++.+
T Consensus 3 ~vY~ts~~g~~~~k~~~~~v~~lL~~-k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQ--IFi~~~~iGg~ 74 (92)
T cd03030 3 KVYIASSSGSTEIKKRQQEVLGFLEA-KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQ--IFNGDEYCGDY 74 (92)
T ss_pred EEEEecccccHHHHHHHHHHHHHHHH-CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCE--EEECCEEeeCH
Confidence 344 5554444444433 333333 35899999998776544332 2345565 44677665533
No 269
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=61.12 E-value=18 Score=29.73 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCcEEEEec-CCChhhHHHHHHHHHHHHH-----cCCeEEEEEEcCC
Q 028334 85 SDRVVCHFY-RENWPCKVMDKHMSILAKK-----HIETRFVKIHAEK 125 (210)
Q Consensus 85 ~~~vvV~fy-~wC~~C~~~~~~l~~la~~-----~~~v~f~~vd~~~ 125 (210)
+..+||-+- .+|..|..-...|+.|..+ |++|.|+.||--.
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 344777788 9999999988888777644 5679999999653
No 270
>COG2118 DNA-binding protein [General function prediction only]
Probab=60.70 E-value=11 Score=27.37 Aligned_cols=20 Identities=40% Similarity=0.860 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 028334 36 DDDDLEALRERRLQQMKKMA 55 (210)
Q Consensus 36 dd~~le~~r~~Rl~el~~~~ 55 (210)
||++|+.+|++++.+|+++.
T Consensus 2 dd~eLEeIRrrkl~eLQrq~ 21 (116)
T COG2118 2 DDEELEEIRRRKLAELQRQA 21 (116)
T ss_pred ChHHHHHHHHHHHHHHHHhh
Confidence 56689999999999999955
No 271
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.52 E-value=35 Score=27.88 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=42.7
Q ss_pred HHhcCCcEEEEec--CC---ChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCC-CCCCcEE-EEEECCEEEE
Q 028334 81 VVKASDRVVCHFY--RE---NWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLK-IVVLPTL-ALIKNAKVDD 151 (210)
Q Consensus 81 ~v~~~~~vvV~fy--~w---C~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~-i~~vPtl-l~~~~G~~v~ 151 (210)
.+.+..+|+++.- |. |+..+.+..+|.. + ++.|...|+-...++..... ...+||+ -+|-+|+.++
T Consensus 134 ~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~----~-nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 134 KLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQS----H-NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred HhcccCeEEEEecCCCCcccccccHHHHHHHHH----c-CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 3344555666553 44 5555555544433 3 57788999988877766554 4678988 7888997655
No 272
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=59.42 E-value=38 Score=28.35 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=28.8
Q ss_pred hhhHHHHHhcCCcEEEEec-CCCh-hhHHHHHHH----HHHHHHcCC---eEEEEEEcCC
Q 028334 75 EKDFFSVVKASDRVVCHFY-RENW-PCKVMDKHM----SILAKKHIE---TRFVKIHAEK 125 (210)
Q Consensus 75 ~~~f~~~v~~~~~vvV~fy-~wC~-~C~~~~~~l----~~la~~~~~---v~f~~vd~~~ 125 (210)
.+.+-+.--.++-++++|. +.|| -|-.....| .++..+..- -.|+.+|.+.
T Consensus 129 Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 129 GKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred CCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 3334333334555999999 9998 465444433 444333221 2688888754
No 273
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=57.55 E-value=7 Score=27.67 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=42.2
Q ss_pred EEEec-CCChhhHHHHHHHHHHHHHc--CCeEEEEEEcCCChhHHHh----CC------CCCCcEE-EEEECCEEEEEEe
Q 028334 89 VCHFY-RENWPCKVMDKHMSILAKKH--IETRFVKIHAEKSPFLAER----LK------IVVLPTL-ALIKNAKVDDYVV 154 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~la~~~--~~v~f~~vd~~~~~~l~~~----~~------i~~vPtl-l~~~~G~~v~~~~ 154 (210)
+|.+| +.+.....+...-+++..-+ .++.|-.+|+..++...+. .| -.+.|-. .+|.+|.-++.+.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 46667 77776777776665554432 3599999999987543322 21 1222221 5778888777766
Q ss_pred cccCCCCCCCCCHHHHHHHH
Q 028334 155 GFDELGGTDEFSTEELEERL 174 (210)
Q Consensus 155 G~~~~g~~~~~~~~~L~~~L 174 (210)
.+.... ..+.|..||
T Consensus 82 ~f~ea~-----E~~~L~~fL 96 (99)
T PF04908_consen 82 DFEEAN-----ENGELEEFL 96 (99)
T ss_dssp HHHHHH-----CTT-HHHHH
T ss_pred HHHHHH-----hhCHHHHHh
Confidence 554221 334555555
No 274
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=57.30 E-value=48 Score=21.11 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=33.3
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC----CChhHHHhCCCCCCcEEEEEECCEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE----KSPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~----~~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
.|+ +.|+.|+...-.+....-. +.+..++.. ..+.+.+......+|++. .+|..
T Consensus 4 Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~ 62 (76)
T cd03053 4 LYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK 62 (76)
T ss_pred EEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 344 7799999887666554322 344455543 224566677788999874 35643
No 275
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.59 E-value=23 Score=27.20 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=17.7
Q ss_pred hHHHhCCCCCCcEEEEEECCE
Q 028334 128 FLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 128 ~l~~~~~i~~vPtll~~~~G~ 148 (210)
..+..+||.++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 356789999999999998776
No 276
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=50.25 E-value=55 Score=20.71 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=32.4
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC-ChhHHHhCCCCCCcEEEEEECCE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK-SPFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~-~~~l~~~~~i~~vPtll~~~~G~ 148 (210)
.|+ +.|++|.+..-.+....... .+.++.++... .+.+.+......+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 355 88999998776554421111 14555555433 345556666788998753 3554
No 277
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=50.19 E-value=74 Score=25.28 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcCCcEEEEecCCCh--hhH
Q 028334 46 RRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRENW--PCK 100 (210)
Q Consensus 46 ~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~~~vvV~fy~wC~--~C~ 100 (210)
..+.+++..+-.+....- .. +..+.|.++|...+.+++.|++ |||+ .|-
T Consensus 108 ~ll~~i~~~l~~~A~~~~--~~-~~~~~~~~e~~~~~~~~~~v~~---~wcg~~~~e 158 (202)
T cd00862 108 ELLDEIQEDLYERALEFR--DA-TRIVDTWEEFKEALNEKGIVLA---PWCGEEECE 158 (202)
T ss_pred HHHHHHHHHHHHHHHHHH--hc-eEeeCCHHHHHHHHhcCCEEEE---EecCCHHHH
Confidence 445555555443332111 12 6678789999999977543333 7886 554
No 278
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=48.14 E-value=1.1e+02 Score=24.93 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHH
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEEL 170 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L 170 (210)
|. ..|..|-.+...|+.-.- .++++|+ ++...++..-+-+|-++|. +|.+|+++. .+. .+++.+
T Consensus 16 ~~HktC~ssy~Lf~~L~nkgl-l~~Vkii--~a~~p~f~~~~~~V~SvP~--Vf~DGel~~--~dp--------Vdp~~i 80 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENKGL-LGKVKII--DAELPPFLAFEKGVISVPS--VFIDGELVY--ADP--------VDPEEI 80 (265)
T ss_pred EEecchHHHHHHHHHHHhcCC-CCCceEE--EcCCChHHHhhcceeecce--EEEcCeEEE--cCC--------CCHHHH
Confidence 44 889999887766654211 4557775 4555566666668889998 566898764 122 267777
Q ss_pred HHHHHH
Q 028334 171 EERLAK 176 (210)
Q Consensus 171 ~~~L~~ 176 (210)
+..+..
T Consensus 81 es~~~G 86 (265)
T COG5494 81 ESILSG 86 (265)
T ss_pred HHHHcC
Confidence 777754
No 279
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=46.80 E-value=23 Score=25.49 Aligned_cols=76 Identities=7% Similarity=-0.082 Sum_probs=39.5
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-------hHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-------FLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGT 162 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-------~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~ 162 (210)
.|+ |.|+.|+.....|++- ++.|-.+|.-+.+ .+...+|+.. ++=..|..... .+.. .
T Consensus 4 iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~p~s~~eL~~~l~~~g~~~----l~n~~~~~~r~-~~~~----~ 69 (113)
T cd03033 4 FYEKPGCANNARQKALLEAA-----GHEVEVRDLLTEPWTAETLRPFFGDLPVAE----WFNPAAPRVKS-GEVV----P 69 (113)
T ss_pred EEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcCCCCHHHHHHHHHHcCHHH----HHhcccHHHHh-cCCC----c
Confidence 455 9999999877666443 4555555554432 2334444311 11123332221 1111 0
Q ss_pred CCCCHHHHHHHHHHCCCc
Q 028334 163 DEFSTEELEERLAKAQVI 180 (210)
Q Consensus 163 ~~~~~~~L~~~L~~~~~l 180 (210)
...+.+++..+|.++..|
T Consensus 70 ~~ls~~e~~~ll~~~P~L 87 (113)
T cd03033 70 EALDEEEALALMIADPLL 87 (113)
T ss_pred cCCCHHHHHHHHHhCcce
Confidence 234667788888888755
No 280
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=46.55 E-value=19 Score=26.48 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 028334 37 DDDLEALRERRLQQMKKMAE 56 (210)
Q Consensus 37 d~~le~~r~~Rl~el~~~~~ 56 (210)
|++++.+|++|+.+|+....
T Consensus 2 D~eL~AiR~qRlaqlqa~~G 21 (129)
T KOG3431|consen 2 DPELQAIRAQRLAQLQANSG 21 (129)
T ss_pred chHHHHHHHHHHHHhhhhcC
Confidence 68899999999999998764
No 281
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=44.72 E-value=80 Score=27.67 Aligned_cols=63 Identities=2% Similarity=-0.113 Sum_probs=38.7
Q ss_pred CCChhhHH-HHHHHHHHHHHcCC----eEEEEEEcC-CC--hhHHHhCCCCCCc-EEEEEECCEEEEEEecc
Q 028334 94 RENWPCKV-MDKHMSILAKKHIE----TRFVKIHAE-KS--PFLAERLKIVVLP-TLALIKNAKVDDYVVGF 156 (210)
Q Consensus 94 ~wC~~C~~-~~~~l~~la~~~~~----v~f~~vd~~-~~--~~l~~~~~i~~vP-tll~~~~G~~v~~~~G~ 156 (210)
|.|+.|.. ......++-++|.+ +++.-+-+- .. ..-...+||.+-+ ..++|++|+++.++.+-
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~ 343 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEE 343 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChH
Confidence 77877743 33444555555554 455544442 22 2345678887544 67888999999987654
No 282
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=44.22 E-value=31 Score=24.72 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=44.0
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-------hHHHhCCCCCCcE-EEEE-ECCEEEEEEecccCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-------FLAERLKIVVLPT-LALI-KNAKVDDYVVGFDELG 160 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-------~l~~~~~i~~vPt-ll~~-~~G~~v~~~~G~~~~g 160 (210)
.|+ |.|..|+.....|+.- ++.|..+|..+.+ .+.+..| +++ --++ +.|...... |..
T Consensus 3 iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~p~t~~el~~~l~~~g---~~~~~~lin~~~~~~~~l-~~~--- 70 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKNPPTKSELEAIFAKLG---LTVAREMIRTKEALYKEL-GLS--- 70 (114)
T ss_pred EEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCCCcCHHHHHHHHHHcC---CchHHHHHhcCCcHHHHc-CCC---
Confidence 455 9999999988777553 4556666655442 3444444 333 1133 455433322 221
Q ss_pred CCCCCCHHHHHHHHHHCCCc
Q 028334 161 GTDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 161 ~~~~~~~~~L~~~L~~~~~l 180 (210)
...++.+++..+|.++..+
T Consensus 71 -~~~ls~~e~i~~l~~~P~L 89 (114)
T TIGR00014 71 -DPNLSDQELLDAMVAHPIL 89 (114)
T ss_pred -ccCCCHHHHHHHHHHCcCc
Confidence 1245677788888888755
No 283
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=44.14 E-value=62 Score=26.73 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=55.3
Q ss_pred EEEEec--CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC------------------ChhHHHhCCCCCCcEEEEEECC
Q 028334 88 VVCHFY--RENWPCKVMDKHMSILAKKHIETRFVKIHAEK------------------SPFLAERLKIVVLPTLALIKNA 147 (210)
Q Consensus 88 vvV~fy--~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~------------------~~~l~~~~~i~~vPtll~~~~G 147 (210)
.||.+| -.|..|-..+..|.+++.+ +++.=+...++- ...+.+.|+-++++|--.+-+|
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnG 121 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNG 121 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeec
Confidence 555555 7799999999999999886 555555555542 1246678999999999999888
Q ss_pred EEEEEEecccCCCCCCCCCHHHHHHHHHHCC
Q 028334 148 KVDDYVVGFDELGGTDEFSTEELEERLAKAQ 178 (210)
Q Consensus 148 ~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~ 178 (210)
.... .|. ....++..|...+
T Consensus 122 r~~~--~Ga---------d~~~i~~~i~a~~ 141 (261)
T COG5429 122 RVHA--NGA---------DPGAIEDAIAAMA 141 (261)
T ss_pred hhhh--cCC---------CHHHHHHHHHHhh
Confidence 6533 333 3666777766543
No 284
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=44.04 E-value=76 Score=20.13 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=30.1
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCC-CCCcEEEEEECCE
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKI-VVLPTLALIKNAK 148 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i-~~vPtll~~~~G~ 148 (210)
++ +.|++|.+..-.+....-. .....++.... +.+.+.... ..+|++.. +|.
T Consensus 4 y~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~ 58 (74)
T cd03058 4 LGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGK 58 (74)
T ss_pred EECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCE
Confidence 44 8899999987666554332 33444544332 333444443 68998853 554
No 285
>PRK10026 arsenate reductase; Provisional
Probab=43.43 E-value=22 Score=26.88 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=39.1
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC----hhHHHhCCCCCCcEEEEE-ECCEEEEEEecccCCCCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS----PFLAERLKIVVLPTLALI-KNAKVDDYVVGFDELGGTDE 164 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~----~~l~~~~~i~~vPtll~~-~~G~~v~~~~G~~~~g~~~~ 164 (210)
.|+ |.|+.|+.....|++- ++.|-.+|.-+. .++..-+.-.++++--++ ..|...... |... ..
T Consensus 6 iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L-~~~~----~~ 75 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEEL-GLAE----DK 75 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHc-CCCc----cC
Confidence 344 9999999987666543 444444444332 222222222333333333 344332221 2211 23
Q ss_pred CCHHHHHHHHHHCCCc
Q 028334 165 FSTEELEERLAKAQVI 180 (210)
Q Consensus 165 ~~~~~L~~~L~~~~~l 180 (210)
++.+++..+|.++..|
T Consensus 76 ls~~e~l~ll~~~P~L 91 (141)
T PRK10026 76 FTDDQLIDFMLQHPIL 91 (141)
T ss_pred CCHHHHHHHHHhCccc
Confidence 4566677777776644
No 286
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=42.38 E-value=47 Score=16.90 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028334 41 EALRERRLQQMKKMAEK 57 (210)
Q Consensus 41 e~~r~~Rl~el~~~~~~ 57 (210)
+.||.+|+..++....+
T Consensus 3 ~kwrkkrmrrlkrkrr~ 19 (26)
T KOG4752|consen 3 AKWRKKRMRRLKRKRRK 19 (26)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 57899999988876543
No 287
>PF11673 DUF3269: Protein of unknown function (DUF3269); InterPro: IPR021687 This entry is represented by Bacteriophage 92, Orf70. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.12 E-value=40 Score=22.39 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=38.1
Q ss_pred CCCCCCcEEEEEE---CCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCcccCCCC
Q 028334 133 LKIVVLPTLALIK---NAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEGES 186 (210)
Q Consensus 133 ~~i~~vPtll~~~---~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l~~~~~~ 186 (210)
|...+.|.+.+.+ ++..+..+.|..--+..+.++.++|+.+=..|+++ ++.+.
T Consensus 9 Y~~dg~e~v~V~~~~~~~~~v~~l~g~hfs~~~~~~T~~El~~fK~~~~L~-~~eEL 64 (73)
T PF11673_consen 9 YRSDGWEMVKVIPRTDNVNNVKNLTGAHFSHINKNMTDDELKKFKAKHNLL-YEEEL 64 (73)
T ss_pred EcCCCcEEEEEEEccCCceeecccccchhhcccCcccHHHHHHHHHHHhhh-hHHHh
Confidence 5667888888885 55667777776543444567899999999999988 54444
No 288
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.44 E-value=1e+02 Score=29.36 Aligned_cols=103 Identities=11% Similarity=0.065 Sum_probs=52.6
Q ss_pred eecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC--------C-hhHHHhC--CCCC
Q 028334 70 SEIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK--------S-PFLAERL--KIVV 137 (210)
Q Consensus 70 ~~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~--------~-~~l~~~~--~i~~ 137 (210)
..|+.++.|...=...+.=|+.|+ |.|+.- .|.+....-.++.|+.|---+ . ..+..-| .-.+
T Consensus 529 ~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKT-----LlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 529 APIKRPDLFKALGIDAPSGVLLCGPPGCGKT-----LLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARAS 603 (802)
T ss_pred hhccCHHHHHHhCCCCCCceEEeCCCCccHH-----HHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 344344444444333334566688 999853 233333333468888775432 1 1111111 2257
Q ss_pred CcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCcc
Q 028334 138 LPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIF 181 (210)
Q Consensus 138 vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l~ 181 (210)
.|+++||..= ...+-....++ ..-....+-.+|.+.+.++
T Consensus 604 aPCVIFFDEi---DaL~p~R~~~~-s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 604 APCVIFFDEI---DALVPRRSDEG-SSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred CCeEEEecch---hhcCcccCCCC-chhHHHHHHHHHHHhcccc
Confidence 9999999632 11221111111 1224667888888887773
No 289
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=41.17 E-value=37 Score=24.20 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=42.1
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-------hHHHhCCCCCCcEEEEE-ECCEEEEEEecccCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-------FLAERLKIVVLPTLALI-KNAKVDDYVVGFDELGG 161 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-------~l~~~~~i~~vPtll~~-~~G~~v~~~~G~~~~g~ 161 (210)
.|+ |.|+.|+.....|++- ++.|..+|+-+.+ .+...+| .+.--++ ..|...... +..
T Consensus 3 iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~~~t~~el~~~l~~~~---~~~~~lin~~~~~y~~l-~~~---- 69 (112)
T cd03034 3 IYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKTPPTAAELRELLAKLG---ISPRDLLRTKEAPYKEL-GLA---- 69 (112)
T ss_pred EEECCCCHHHHHHHHHHHHC-----CCCeEEEecccCCcCHHHHHHHHHHcC---CCHHHHHhcCCchHHHc-CCC----
Confidence 455 9999999977655443 4556666655442 2344443 2222222 344332221 111
Q ss_pred CCCCCHHHHHHHHHHCCCc
Q 028334 162 TDEFSTEELEERLAKAQVI 180 (210)
Q Consensus 162 ~~~~~~~~L~~~L~~~~~l 180 (210)
...++.+++..+|.++..|
T Consensus 70 ~~~ls~~e~i~ll~~~P~L 88 (112)
T cd03034 70 DPELSDEELIDAMAAHPIL 88 (112)
T ss_pred ccCCCHHHHHHHHHhCcCc
Confidence 1345778888888888755
No 290
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.22 E-value=57 Score=23.63 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=33.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCC--CCCcEEEEEE
Q 028334 96 NWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKI--VVLPTLALIK 145 (210)
Q Consensus 96 C~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i--~~vPtll~~~ 145 (210)
|++|..+.-.|...-..-..+.+.+|+...- ..+....|- .++|++++=.
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 8899988877755433322377888888765 445555553 6899876643
No 291
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=39.84 E-value=38 Score=18.16 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 028334 36 DDDDLEALRERRLQQMKK 53 (210)
Q Consensus 36 dd~~le~~r~~Rl~el~~ 53 (210)
+|++-+++|++|+++...
T Consensus 9 ed~ea~r~reeRla~y~a 26 (28)
T PF10587_consen 9 EDEEAERIREERLAAYAA 26 (28)
T ss_pred ccHHHHHHHHHHHHHHHc
Confidence 567889999999987653
No 292
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.28 E-value=45 Score=26.87 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=25.0
Q ss_pred hHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 128 FLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 128 ~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
.+...+|+.++||+++ +|+ .+.|.. +...|...+..
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~--------~~~~l~~~i~~ 241 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLP--------DLDELKAIIDE 241 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCC--------CHHHHHHHHHH
Confidence 3566899999999766 343 455655 46777777764
No 293
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.07 E-value=1.6e+02 Score=24.38 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=24.9
Q ss_pred hhHHHHHhcC-CcEEEEec-CCChhhHHHHHH--HHHHHH
Q 028334 76 KDFFSVVKAS-DRVVCHFY-RENWPCKVMDKH--MSILAK 111 (210)
Q Consensus 76 ~~f~~~v~~~-~~vvV~fy-~wC~~C~~~~~~--l~~la~ 111 (210)
..|....... +.+||-+- --|+.|....|. +..+.+
T Consensus 178 ~~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~~~~~~V~~ 217 (239)
T COG1579 178 SEYERIRKNKKGVGVVPLEGRVCGGCHMKLPSQTLSKVRK 217 (239)
T ss_pred HHHHHHHhcCCCceEEeecCCcccCCeeeecHHHHHHHhc
Confidence 3455555666 55888899 999999988774 344444
No 294
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=35.81 E-value=96 Score=19.79 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=33.2
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC---CChhHHHhCCCCCCcEEEEEECCE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAE---KSPFLAERLKIVVLPTLALIKNAK 148 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~---~~~~l~~~~~i~~vPtll~~~~G~ 148 (210)
.|+ +.|+.|....-.++...- .+.+..++.. ..+.+.+......+|++.. .+|.
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~ 60 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGF 60 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCC
Confidence 355 778888877655554321 2555666654 2355666667889999854 2454
No 295
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=2.5e+02 Score=24.97 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=60.7
Q ss_pred ecCChhhHHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC--------hhHH-Hh--CCCCCC
Q 028334 71 EIQAEKDFFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS--------PFLA-ER--LKIVVL 138 (210)
Q Consensus 71 ~i~t~~~f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~--------~~l~-~~--~~i~~v 138 (210)
.++.++-|.+.=...++=|+.++ |.+|.- .|.+.....-+..|++|...+- +.+. .- +.-..-
T Consensus 170 PL~~PElF~~~GI~PPKGVLLYGPPGTGKT-----LLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka 244 (406)
T COG1222 170 PLKNPELFEELGIDPPKGVLLYGPPGTGKT-----LLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA 244 (406)
T ss_pred cccCHHHHHHcCCCCCCceEeeCCCCCcHH-----HHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC
Confidence 45467777766556566556577 988752 3444444455799999987642 1121 11 233678
Q ss_pred cEEEEEEC-----CEEEEEEecccCCCCCCCCCHHHHHHHHHHCCCcccCCCC
Q 028334 139 PTLALIKN-----AKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEGES 186 (210)
Q Consensus 139 Ptll~~~~-----G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l~~~~~~ 186 (210)
|+++|+.. |+....-.|.. .=....+..+|.+....++.++.
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gD------rEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGD------REVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred CeEEEEechhhhhcccccCCCCch------HHHHHHHHHHHHhccCCCCCCCe
Confidence 99999963 32222222211 11345677888888777554443
No 296
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=35.15 E-value=71 Score=27.99 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=43.7
Q ss_pred ec-CCChhhHHH-HHHHHHHHHHcC----CeEEEEEEcCCC-hh--HHHhCCCC-CCc-EEEEEECCEEEEEEecccCCC
Q 028334 92 FY-RENWPCKVM-DKHMSILAKKHI----ETRFVKIHAEKS-PF--LAERLKIV-VLP-TLALIKNAKVDDYVVGFDELG 160 (210)
Q Consensus 92 fy-~wC~~C~~~-~~~l~~la~~~~----~v~f~~vd~~~~-~~--l~~~~~i~-~vP-tll~~~~G~~v~~~~G~~~~g 160 (210)
.. |.|+.|..- ....+++.+... +++++-+-+--| |. -...||+. +-| ..++|++|+++.+..-...
T Consensus 269 ISCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~-- 346 (359)
T PF04551_consen 269 ISCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEE-- 346 (359)
T ss_dssp EE----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTC--
T ss_pred eeCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHH--
Confidence 45 888877432 233444544443 377777777655 22 23457776 444 5899999999999843331
Q ss_pred CCCCCCHHHHHHHHHHC
Q 028334 161 GTDEFSTEELEERLAKA 177 (210)
Q Consensus 161 ~~~~~~~~~L~~~L~~~ 177 (210)
-.+.|...+++|
T Consensus 347 -----~vd~L~~~I~~~ 358 (359)
T PF04551_consen 347 -----IVDELIELIEEH 358 (359)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhh
Confidence 467777777664
No 297
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=34.97 E-value=1.5e+02 Score=20.40 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-hHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHH
Q 028334 94 RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-FLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEE 172 (210)
Q Consensus 94 ~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~ 172 (210)
.+|+.|+...=.|... --...++.+|....+ .+.+......+|++. .+|..+. ....+..
T Consensus 20 g~cpf~~rvrl~L~eK---gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~--------------eS~~I~e 80 (91)
T cd03061 20 GNCPFCQRLFMVLWLK---GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKT--------------DNNKIEE 80 (91)
T ss_pred CCChhHHHHHHHHHHC---CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEec--------------CHHHHHH
Confidence 5788998877555443 112455667766654 455556678899664 4564432 4566777
Q ss_pred HHHH
Q 028334 173 RLAK 176 (210)
Q Consensus 173 ~L~~ 176 (210)
+|.+
T Consensus 81 YLde 84 (91)
T cd03061 81 FLEE 84 (91)
T ss_pred HHHH
Confidence 7664
No 298
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=2.5e+02 Score=22.47 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=59.1
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHHHHcC--CeEEEEEEcCC----------------------------ChhHHHhC
Q 028334 86 DRVVCHFY--RENWPCKVMDKHMSILAKKHI--ETRFVKIHAEK----------------------------SPFLAERL 133 (210)
Q Consensus 86 ~~vvV~fy--~wC~~C~~~~~~l~~la~~~~--~v~f~~vd~~~----------------------------~~~l~~~~ 133 (210)
+-+|++|| +.-.-|-.....|.+...+|. ++.++.+.++. ...+++.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 44777788 567889887777777777765 36666666553 33577888
Q ss_pred CCCC------CcEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHH------HHHCCCccc
Q 028334 134 KIVV------LPTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEER------LAKAQVIFL 182 (210)
Q Consensus 134 ~i~~------vPtll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~------L~~~~~l~~ 182 (210)
|+-. +=.++++ .+|.+....+...+.|- ..+++-+. ..+||.+-|
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGR----n~dEilR~idAlq~~~~hg~vcP 171 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGR----NVDEILRVIDALQFVAKHGEVCP 171 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCc----CHHHHHHHHHHHHHHHHhCCCcc
Confidence 8742 2234555 58888888887776663 34444433 345676644
No 299
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=32.68 E-value=1.6e+02 Score=22.99 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=36.4
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCCCCCcEEEEEECCEEE
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
.+-.|+ ++|+.|....=.|....-. +....+|.... +.+.+......+|++. .+|..+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVS---VEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCC---CEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 344455 8899999988666554222 44556665443 4566666678899985 466443
No 300
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=32.53 E-value=2.8e+02 Score=23.85 Aligned_cols=54 Identities=6% Similarity=0.101 Sum_probs=34.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC--hhHHHhCCCCCCcEEEE
Q 028334 88 VVCHFYRENWPCKVMDKHMSILAKKHIETRFVKIHAEKS--PFLAERLKIVVLPTLAL 143 (210)
Q Consensus 88 vvV~fy~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~--~~l~~~~~i~~vPtll~ 143 (210)
++|.+ .||.|++....|..+...-..+.++.||+... ......+.-..+|.+-+
T Consensus 79 ~lIEL--GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v 134 (319)
T TIGR03439 79 MLVEL--GSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRC 134 (319)
T ss_pred EEEEE--CCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEE
Confidence 55555 46678888888888875544588999998864 33334443345565544
No 301
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=31.72 E-value=81 Score=19.86 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=28.5
Q ss_pred cCCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC--hhHHHhCCCCCCcEEEEEECCEE
Q 028334 93 YRENWPCKVMDKHMSILAKKHIETRFVKIHAEKS--PFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 93 y~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~--~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
|+.|+.|+...=.++...-. ...+.++.... +.+.+......+|++.. +|..
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~---~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 59 (72)
T cd03039 6 FNIRGRGEPIRLLLADAGVE---YEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKK 59 (72)
T ss_pred EcCcchHHHHHHHHHHCCCC---cEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEE
Confidence 37788898776555544332 33344443322 22334455678998853 5543
No 302
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=31.69 E-value=3e+02 Score=25.18 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=33.7
Q ss_pred EEEEec-CCChh-hHHHHHHHHHHHHHcCC--eEEEEEE-cCCChhHHHhCCCCCCc--EEEEE
Q 028334 88 VVCHFY-RENWP-CKVMDKHMSILAKKHIE--TRFVKIH-AEKSPFLAERLKIVVLP--TLALI 144 (210)
Q Consensus 88 vvV~fy-~wC~~-C~~~~~~l~~la~~~~~--v~f~~vd-~~~~~~l~~~~~i~~vP--tll~~ 144 (210)
+||.|| +.-.. =..+...+..+.++|+. +.++.+. ..-....+-..|+..+| +++||
T Consensus 284 ~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~ 347 (499)
T PF05679_consen 284 TVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFF 347 (499)
T ss_pred EEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEE
Confidence 788888 55433 23456678888888876 6667766 33333344445555444 44444
No 303
>PRK04239 hypothetical protein; Provisional
Probab=30.87 E-value=44 Score=24.17 Aligned_cols=18 Identities=39% Similarity=0.807 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028334 39 DLEALRERRLQQMKKMAE 56 (210)
Q Consensus 39 ~le~~r~~Rl~el~~~~~ 56 (210)
+|+++|++|+.+|++...
T Consensus 2 ELe~IR~~rl~eLq~q~~ 19 (110)
T PRK04239 2 ELEEIRRRKLEELQKQAQ 19 (110)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 589999999999987664
No 304
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=30.83 E-value=1.1e+02 Score=26.76 Aligned_cols=65 Identities=9% Similarity=-0.034 Sum_probs=38.7
Q ss_pred Eec-CCChhhHH-HHHHHHHHHHHcC---C-eEEEEEEcCCC-h--hHHHhCCCCCC--cEEEEEECCEEEEEEec
Q 028334 91 HFY-RENWPCKV-MDKHMSILAKKHI---E-TRFVKIHAEKS-P--FLAERLKIVVL--PTLALIKNAKVDDYVVG 155 (210)
Q Consensus 91 ~fy-~wC~~C~~-~~~~l~~la~~~~---~-v~f~~vd~~~~-~--~l~~~~~i~~v--Ptll~~~~G~~v~~~~G 155 (210)
... |.|+.|.. +....+++.+.+. . ++++-+-+--| | .-...+||.+- ...++|++|+++.++.+
T Consensus 259 iiSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 259 IVACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred EEECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 346 88888853 3334444444433 2 66665555433 2 22456787654 36788999999887743
No 305
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=30.72 E-value=2.5e+02 Score=21.67 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.9
Q ss_pred hHHHhCCCCCC-cEEEEE-ECCEEEEEEecccCCCCCCCCCHHHHHHHHH
Q 028334 128 FLAERLKIVVL-PTLALI-KNAKVDDYVVGFDELGGTDEFSTEELEERLA 175 (210)
Q Consensus 128 ~l~~~~~i~~v-Ptll~~-~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~ 175 (210)
.+...|+...- -+++++ ++|++.....|.. +++++...+.
T Consensus 114 ~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~L--------s~~Ev~qVi~ 155 (160)
T PF09695_consen 114 VVRKAWQLQEESSAIIVLDKQGKVQFVKEGAL--------SPAEVQQVIA 155 (160)
T ss_pred ceeccccCCCCCceEEEEcCCccEEEEECCCC--------CHHHHHHHHH
Confidence 34455655433 356666 6999998888877 7777777654
No 306
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=30.62 E-value=1.5e+02 Score=18.85 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=33.0
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCC----ChhHHHhCCCCCCcEEEEEECCEE
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEK----SPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~----~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
.|+ +.|++|+...-.++...-. +.+..++... .+.+.+......+|++. .+|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 345 7889998876555554332 3445555432 24566667788999985 35643
No 307
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=30.16 E-value=2.3e+02 Score=21.32 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=42.8
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCC-c-EEEEEECCEEEE
Q 028334 88 VVCHFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVL-P-TLALIKNAKVDD 151 (210)
Q Consensus 88 vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~v-P-tll~~~~G~~v~ 151 (210)
-.|.+| --|+.|-.....|.+.-. -..+.|+.+..+....+...+++..- + ++++.++|+...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 455678 999999986655544322 12399999998888778888777543 4 555557886543
No 308
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=30.12 E-value=3.1e+02 Score=22.48 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=40.5
Q ss_pred ceeecCChhhHHHHHhcCCcEEEEec-CC------ChhhHHHHHHHHHHHHHcC-CeEEEEEEcCCChhHHHh----CCC
Q 028334 68 DYSEIQAEKDFFSVVKASDRVVCHFY-RE------NWPCKVMDKHMSILAKKHI-ETRFVKIHAEKSPFLAER----LKI 135 (210)
Q Consensus 68 ~v~~i~t~~~f~~~v~~~~~vvV~fy-~w------C~~C~~~~~~l~~la~~~~-~v~f~~vd~~~~~~l~~~----~~i 135 (210)
..+.+ +...-.-.-.=.++|-|.+| +. -..-..+...|++++..-+ .+++-.+|.+..+...+. |||
T Consensus 8 k~ysL-S~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 8 KRYSL-SDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCccC-CHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 45566 44333222222235666666 54 2333444455555555556 499999999777665555 888
Q ss_pred CCCc
Q 028334 136 VVLP 139 (210)
Q Consensus 136 ~~vP 139 (210)
..++
T Consensus 87 ~~~~ 90 (271)
T PF09822_consen 87 QPVQ 90 (271)
T ss_pred Cccc
Confidence 7744
No 309
>PRK10387 glutaredoxin 2; Provisional
Probab=30.03 E-value=2.1e+02 Score=22.11 Aligned_cols=52 Identities=6% Similarity=0.032 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHHHhCCCCCCcEEEEEECCEE
Q 028334 94 RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 94 ~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
+.|++|....-.++...-. ...+.++...........+...+|+++. .+|..
T Consensus 7 ~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 7 DHCPFCVKARMIFGLKNIP---VELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred CCCchHHHHHHHHHHcCCC---eEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 7899999877555444222 2333343332221223334567998743 35644
No 310
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=29.53 E-value=2.4e+02 Score=21.06 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=51.4
Q ss_pred cCCcEEEEec-CCChhhHHHHHH------HHHHHHHcCCeEEEEEEcCCCh------------------hHHHhCCCCCC
Q 028334 84 ASDRVVCHFY-RENWPCKVMDKH------MSILAKKHIETRFVKIHAEKSP------------------FLAERLKIVVL 138 (210)
Q Consensus 84 ~~~~vvV~fy-~wC~~C~~~~~~------l~~la~~~~~v~f~~vd~~~~~------------------~l~~~~~i~~v 138 (210)
+.+.++|+.. |.-..+..+... +.+.-+ .++.+..-|++... .....++...+
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 3344888888 766544444332 233322 23667677766542 23556789999
Q ss_pred cEEEEEE-CC---EEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 139 PTLALIK-NA---KVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 139 Ptll~~~-~G---~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
|.+.++- .. .++.++.|.. ++++|-..|..
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~--------~~~ell~~L~~ 131 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNT--------GVDELLMRLIE 131 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCC--------CHHHHHHHHHH
Confidence 9998884 22 6778888877 67777766653
No 311
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=28.85 E-value=61 Score=26.59 Aligned_cols=51 Identities=27% Similarity=0.259 Sum_probs=38.1
Q ss_pred hHHHhCCCCCCcEEEEEECCEEE--EEEecccCCCCCCCCCHHHHHHHHHHCCCcccCCCC
Q 028334 128 FLAERLKIVVLPTLALIKNAKVD--DYVVGFDELGGTDEFSTEELEERLAKAQVIFLEGES 186 (210)
Q Consensus 128 ~l~~~~~i~~vPtll~~~~G~~v--~~~~G~~~~g~~~~~~~~~L~~~L~~~~~l~~~~~~ 186 (210)
++++.|+.+-+=|+=-|.=|+++ .++.|.. +...|...|++||++.+++.+
T Consensus 110 d~a~e~g~~~IyTLGGy~vGkl~eep~VlGA~--------ts~eLi~~lke~gV~fr~~ep 162 (258)
T COG2047 110 DIAKEFGARMIYTLGGYGVGKLVEEPRVLGAV--------TSKELIEELKEHGVEFRSGEP 162 (258)
T ss_pred HHHHHcCCcEEEEecCcccCcccCCceeEEec--------CCHHHHHHHHHcCeEeccCCC
Confidence 35677888777777666667765 3555666 788999999999999776665
No 312
>PRK11752 putative S-transferase; Provisional
Probab=28.85 E-value=2.1e+02 Score=23.51 Aligned_cols=55 Identities=15% Similarity=-0.056 Sum_probs=36.9
Q ss_pred EEEec-CCChhhHHHHHHHHHH-HHHcCC--eEEEEEEcCC----ChhHHHhCCCCCCcEEEE
Q 028334 89 VCHFY-RENWPCKVMDKHMSIL-AKKHIE--TRFVKIHAEK----SPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 89 vV~fy-~wC~~C~~~~~~l~~l-a~~~~~--v~f~~vd~~~----~~~l~~~~~i~~vPtll~ 143 (210)
.+.+| .+|+.|+...-.|.++ +...++ +.++.++... .+.+.+......+|++..
T Consensus 44 ~~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 44 PLQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred CeEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 35566 6789999988888775 433433 5566666543 355666667789999864
No 313
>KOG4529 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.69 E-value=80 Score=27.55 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCCcccCCCC--Ccccccccccc--cccCCCCCCCCCC
Q 028334 167 TEELEERLAKAQVIFLEGES--SVKSGAETRRS--VRQSTNPDSSDSE 210 (210)
Q Consensus 167 ~~~L~~~L~~~~~l~~~~~~--~~~~~~~~~~~--~~~~~~~~~~d~~ 210 (210)
+..+...|.++|+.-+.... ++-+.-+.+.- .|-..+.+|||||
T Consensus 166 ~ssmaekLke~gi~V~g~~v~v~d~~d~~~~neelt~~l~ds~Dsd~d 213 (404)
T KOG4529|consen 166 PSSMAEKLKEMGIAVYGSDVSVLDDFDCEWVNEELTRKLIDSCDSDAD 213 (404)
T ss_pred chHHHHHHHHhCceeeccccccccchhcccccHHhhhhhccCCccCcc
Confidence 56778888888865454333 22222222222 2224677777775
No 314
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=28.41 E-value=2.1e+02 Score=25.04 Aligned_cols=77 Identities=8% Similarity=-0.047 Sum_probs=45.4
Q ss_pred CCChhh-HHHHHHHHHHHHHcCC----eEEEEEEcCCC---hhHHHhCCCCC--CcEEEEEECCEEEEEEecccCCCCCC
Q 028334 94 RENWPC-KVMDKHMSILAKKHIE----TRFVKIHAEKS---PFLAERLKIVV--LPTLALIKNAKVDDYVVGFDELGGTD 163 (210)
Q Consensus 94 ~wC~~C-~~~~~~l~~la~~~~~----v~f~~vd~~~~---~~l~~~~~i~~--vPtll~~~~G~~v~~~~G~~~~g~~~ 163 (210)
|.|+.- -.+...+.++.+++.. ++++-+-+--| ..-...+||.+ -|...+|.+|+++.++.+..
T Consensus 265 P~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~------ 338 (361)
T COG0821 265 PTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEED------ 338 (361)
T ss_pred CCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhh------
Confidence 555432 1222344444444432 44444443322 22345677754 58999999999999987765
Q ss_pred CCCHHHHHHHHHHCC
Q 028334 164 EFSTEELEERLAKAQ 178 (210)
Q Consensus 164 ~~~~~~L~~~L~~~~ 178 (210)
-.++|...+.++.
T Consensus 339 --~~eel~~~i~~~~ 351 (361)
T COG0821 339 --IVEELEALIEAYA 351 (361)
T ss_pred --HHHHHHHHHHHHH
Confidence 5677777777654
No 315
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=28.37 E-value=89 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.4
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcC
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHI 114 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~ 114 (210)
|+ +-||.|-...+.|.++...|+
T Consensus 4 ~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 4 YFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEeCCChHHHHHHHHHHHHHHHhC
Confidence 44 889999999999999998886
No 316
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=28.21 E-value=2.6e+02 Score=21.88 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=27.4
Q ss_pred CCChhhHHHHHHHHHHHHHcCCeEEEEEEcC--CChhHHHhCCCCCCcEEEEEECCEEE
Q 028334 94 RENWPCKVMDKHMSILAKKHIETRFVKIHAE--KSPFLAERLKIVVLPTLALIKNAKVD 150 (210)
Q Consensus 94 ~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~--~~~~l~~~~~i~~vPtll~~~~G~~v 150 (210)
+.|++|+...-.|... ++.|-.+++. ......+..+...+|++.. .+|..+
T Consensus 6 ~~sp~~~kvr~~L~~~-----gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~l 58 (209)
T TIGR02182 6 DHCPFCVRARMIFGLK-----NIPVEKHVLLNDDEETPIRMIGAKQVPILQK-DDGRAM 58 (209)
T ss_pred CCCChHHHHHHHHHHc-----CCCeEEEECCCCcchhHHHhcCCCCcceEEe-eCCeEe
Confidence 7899998776555443 3333333332 2222233444578997743 466543
No 317
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.89 E-value=2.3e+02 Score=21.81 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=41.9
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC---hhHHHhCCCCCCcEEEEEE
Q 028334 85 SDRVVCHFY--RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS---PFLAERLKIVVLPTLALIK 145 (210)
Q Consensus 85 ~~~vvV~fy--~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~---~~l~~~~~i~~vPtll~~~ 145 (210)
++..+|... =.-+-|...-+.|.+.+.++.++.++.|..+.. ..+|...||..+=++--|+
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r 109 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFR 109 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhh
Confidence 444555555 457999999999999999999887777777642 4456666666544444443
No 318
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=27.23 E-value=45 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.5
Q ss_pred CCcEEEEEECCEEEE
Q 028334 137 VLPTLALIKNAKVDD 151 (210)
Q Consensus 137 ~vPtll~~~~G~~v~ 151 (210)
-.|++.+|++|+.+.
T Consensus 11 P~Pti~W~kng~~l~ 25 (79)
T cd05855 11 PKPTLQWFHEGAILN 25 (79)
T ss_pred CCCceEEEECCEECC
Confidence 368999999998774
No 319
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=26.90 E-value=70 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=21.2
Q ss_pred Chhh--HHHHHHHHHH---HHHcCC--eEEEEEEcCC
Q 028334 96 NWPC--KVMDKHMSIL---AKKHIE--TRFVKIHAEK 125 (210)
Q Consensus 96 C~~C--~~~~~~l~~l---a~~~~~--v~f~~vd~~~ 125 (210)
|..| .....+|.+| .+.||+ ++++.+|...
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~~ 72 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPKA 72 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCc
Confidence 6777 5556666555 566988 8999888763
No 320
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=26.70 E-value=76 Score=23.02 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=15.0
Q ss_pred EEec-CCChhhHHHHHHHHHH
Q 028334 90 CHFY-RENWPCKVMDKHMSIL 109 (210)
Q Consensus 90 V~fy-~wC~~C~~~~~~l~~l 109 (210)
..|+ |.|..|+....-|++-
T Consensus 4 tiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 4 TIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEeCCCChHHHHHHHHHHHc
Confidence 3455 9999999988766554
No 321
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.64 E-value=83 Score=24.26 Aligned_cols=23 Identities=4% Similarity=-0.117 Sum_probs=20.4
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcC
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHI 114 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~ 114 (210)
|+ +-||.|-...+.|.++.++|+
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCC
Confidence 45 789999999999999999984
No 322
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.56 E-value=1.2e+02 Score=21.21 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=40.4
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCCh-------hHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCCC
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSP-------FLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTD 163 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~-------~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~~ 163 (210)
|+ |.|..|+.....|++ .++.|-.+|..+.+ .+...++.. +.-++=..|......... ...
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~p~s~~el~~~l~~~~~~--~~~lin~~~~~~k~l~~~----~~~ 69 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKEPLSREELRELLSKLGNG--PDDLINTRSKTYKELGKL----KKD 69 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS---HHHHHHHHHHHTSS--GGGGB-TTSHHHHHTTHH----HCT
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhCCCCHHHHHHHHHHhccc--HHHHhcCccchHhhhhhh----hhh
Confidence 56 999999998877754 25667777877643 234444421 111122244321111101 124
Q ss_pred CCCHHHHHHHHHHCCCc
Q 028334 164 EFSTEELEERLAKAQVI 180 (210)
Q Consensus 164 ~~~~~~L~~~L~~~~~l 180 (210)
.++.+++..+|.++..|
T Consensus 70 ~~s~~e~i~~l~~~p~L 86 (110)
T PF03960_consen 70 DLSDEELIELLLENPKL 86 (110)
T ss_dssp TSBHHHHHHHHHHSGGG
T ss_pred hhhhHHHHHHHHhChhh
Confidence 55788888888887744
No 323
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=1.6e+02 Score=26.33 Aligned_cols=51 Identities=8% Similarity=0.202 Sum_probs=34.8
Q ss_pred ChhhHHHHHhcCCc---EEEEec-CCChhhHHHHH--HHHHHHHH--cCCeEEEEEEcC
Q 028334 74 AEKDFFSVVKASDR---VVCHFY-RENWPCKVMDK--HMSILAKK--HIETRFVKIHAE 124 (210)
Q Consensus 74 t~~~f~~~v~~~~~---vvV~fy-~wC~~C~~~~~--~l~~la~~--~~~v~f~~vd~~ 124 (210)
+..++...+.++.. ....|- .+||||+.-.- .+.++... |.+|.++.++.+
T Consensus 55 tiG~lid~~~~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e 113 (420)
T COG3581 55 TIGQLIDAIESGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSE 113 (420)
T ss_pred hHHHHHHHHHhCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeecc
Confidence 66788888888765 333344 89999997653 33444444 556999999954
No 324
>PRK10853 putative reductase; Provisional
Probab=25.67 E-value=83 Score=22.75 Aligned_cols=77 Identities=5% Similarity=-0.039 Sum_probs=40.4
Q ss_pred Eec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-------hhHHHhCCCCCCcEEEEEECCEEEEEEecccCCCCC
Q 028334 91 HFY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-------PFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGT 162 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-------~~l~~~~~i~~vPtll~~~~G~~v~~~~G~~~~g~~ 162 (210)
.|+ |.|..|+.....|++- ++.|-.+|.-+. ..+...+|+. . ++=+.|...... |... .
T Consensus 4 iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~p~s~~eL~~~l~~~g~~---~-l~n~~~~~~r~L-~~~~---k 70 (118)
T PRK10853 4 LYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVDGLDSELLQGFIDELGWE---A-LLNTRGTTWRKL-DETQ---R 70 (118)
T ss_pred EEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccCCcCHHHHHHHHHHcCHH---H-HHhcCCchHHhC-CHhH---h
Confidence 455 9999999988777543 455555555433 2344555543 2 222455443322 1110 0
Q ss_pred CCC-CHHHHHHHHHHCCCc
Q 028334 163 DEF-STEELEERLAKAQVI 180 (210)
Q Consensus 163 ~~~-~~~~L~~~L~~~~~l 180 (210)
... +.+++..+|.++..|
T Consensus 71 ~~~~~~~e~~~ll~~~P~L 89 (118)
T PRK10853 71 NAITDAASAAALMLEQPAI 89 (118)
T ss_pred hcCCCHHHHHHHHHhCcCe
Confidence 012 335667777777755
No 325
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.66 E-value=2.9e+02 Score=22.15 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHH
Q 028334 15 LTVAKAVEEKLDEEIAAIDRL-DDDDLEALRERRLQQMKKMAEK 57 (210)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ld~l-dd~~le~~r~~Rl~el~~~~~~ 57 (210)
|..-++.-++..++.....+. |+..+++++++|++-+..+.+-
T Consensus 74 m~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~el 117 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQREL 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444445545666666555555 7788888888887776666543
No 326
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=25.28 E-value=2.7e+02 Score=20.21 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=63.3
Q ss_pred ChhhHHHHHhcC--CcEEEEec-CCChhhHHHHHHHHHHHHHcC---CeEEEEEEcCCChhH----HHhCCCC-CCcEEE
Q 028334 74 AEKDFFSVVKAS--DRVVCHFY-RENWPCKVMDKHMSILAKKHI---ETRFVKIHAEKSPFL----AERLKIV-VLPTLA 142 (210)
Q Consensus 74 t~~~f~~~v~~~--~~vvV~fy-~wC~~C~~~~~~l~~la~~~~---~v~f~~vd~~~~~~l----~~~~~i~-~vPtll 142 (210)
+..++...-... +..++-|- +..+.-..|.++++++|+.+. +..|+=||.+.-|-+ .+.|+|. .-|.+=
T Consensus 7 ~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIG 86 (120)
T cd03074 7 KPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIG 86 (120)
T ss_pred cHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCcee
Confidence 444444443222 33777888 999999999999999999964 499999999987644 4567764 346665
Q ss_pred EEE---CCEEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 143 LIK---NAKVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 143 ~~~---~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
++. +..+=....+.. +--+.+.|+.||..
T Consensus 87 VV~vtdadSvW~~m~~~~-----d~~t~~~Le~Wied 118 (120)
T cd03074 87 VVNVTDADSVWMEMDDDE-----DLPTAEELEDWIED 118 (120)
T ss_pred eEecccccceeEeccccc-----ccCcHHHHHHHHHh
Confidence 553 111212222221 12378899999864
No 327
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=25.17 E-value=62 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=12.5
Q ss_pred CCcEEEEEECCEEEE
Q 028334 137 VLPTLALIKNAKVDD 151 (210)
Q Consensus 137 ~vPtll~~~~G~~v~ 151 (210)
..|++.+|++|+.+.
T Consensus 11 P~P~v~W~kdg~~l~ 25 (67)
T cd05863 11 PPPEFQWYKDGKLIS 25 (67)
T ss_pred CCCEEEEEECCEECc
Confidence 468999999998775
No 328
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=25.00 E-value=2.6e+02 Score=25.41 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHH-hcCCcEEEEecCCChh
Q 028334 40 LEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVV-KASDRVVCHFYRENWP 98 (210)
Q Consensus 40 le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v-~~~~~vvV~fy~wC~~ 98 (210)
+...-.+.+.++++.+-.+... .....+..+++.++|...+ ..++.+++ |||+.
T Consensus 379 l~~~l~~~l~~~~~~l~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 433 (477)
T PRK08661 379 LVEKVPELLEEIQENLYEKAKE--FLEENTVEVDTLEEFKEAIEEKGGFVKA---PWCGD 433 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhCeEEcCCHHHHHHHHHhCCCEEEE---EecCC
Confidence 3344445566666655443321 1134578888899999999 44432333 77753
No 329
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=24.65 E-value=4.7e+02 Score=22.72 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=51.7
Q ss_pred CceeecCCh--hhHHHHHhcCCcEEEEecCCChhhHHHHHHHHHHHH-HcCCeEEEEEEcCCChhHHHhCCCCCCcEEEE
Q 028334 67 GDYSEIQAE--KDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAK-KHIETRFVKIHAEKSPFLAERLKIVVLPTLAL 143 (210)
Q Consensus 67 ~~v~~i~t~--~~f~~~v~~~~~vvV~fy~wC~~C~~~~~~l~~la~-~~~~v~f~~vd~~~~~~l~~~~~i~~vPtll~ 143 (210)
+.+++.-+. ..|........+.+|+|.+..+|- ...+...|. ++.-..|+...-+-.|. .-..+-.|.+++
T Consensus 133 ~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL---~d~fidAASe~~~~a~FfSaseeVaPe---~~~~kempaV~V 206 (468)
T KOG4277|consen 133 AAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPL---FDAFIDAASEKFSVARFFSASEEVAPE---ENDAKEMPAVAV 206 (468)
T ss_pred cceeeecChhHHHHHHHhhccCceEEEEeCCCCcH---HHHHHHHhhhheeeeeeeccccccCCc---ccchhhccceEE
Confidence 334443244 345555667777888888544442 223334433 44446676643332221 112357899999
Q ss_pred EECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 144 IKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 144 ~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
|++...--...| ..+.|..|+.+-
T Consensus 207 FKDetf~i~de~----------dd~dLseWinRE 230 (468)
T KOG4277|consen 207 FKDETFEIEDEG----------DDEDLSEWINRE 230 (468)
T ss_pred EccceeEEEecC----------chhHHHHHHhHh
Confidence 997744333323 457777777763
No 330
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.15 E-value=2.4e+02 Score=25.68 Aligned_cols=60 Identities=8% Similarity=0.108 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcCCcEEEEecCCChhhHH
Q 028334 37 DDDLEALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRENWPCKV 101 (210)
Q Consensus 37 d~~le~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~~~vvV~fy~wC~~C~~ 101 (210)
-..|+++-..-+.+++..+-.+.. ....+.+..+++.++|..++.+.+.++. |||+.-.-
T Consensus 437 ~~~l~~~v~elLe~iq~~m~~kA~--~~rds~~~~v~~~~eF~~aL~~k~iila---Pwcg~~ec 496 (551)
T KOG4163|consen 437 LGDLEKTVKELLEKIQTNLYEKAK--EKRDSHIVKVNTWEEFVKALDQKKIILA---PWCGEIEC 496 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhheeeeeeHHHHHHHhccCCEEEc---cccCcHHH
Confidence 345666666666666665433222 1224568888899999999988774333 99985433
No 331
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=24.05 E-value=4.8e+02 Score=22.69 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHcCC-eE
Q 028334 41 EALRERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKHIE-TR 117 (210)
Q Consensus 41 e~~r~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~~~-v~ 117 (210)
.+||.+|--+--....+++. ...+.+..+..++......++. ++.+|- ...++-..+ .++|.-+.+ ..
T Consensus 87 rEYRg~RsVeaL~efi~kq~-----s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~----~kva~~lr~dc~ 157 (375)
T KOG0912|consen 87 REYRGQRSVEALIEFIEKQL-----SDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNL----RKVASLLRDDCV 157 (375)
T ss_pred hhhccchhHHHHHHHHHHHh-----ccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHH----HHHHHHHhhccE
Confidence 37888887666555544332 2236666567777777775555 555555 556554443 444444333 33
Q ss_pred EE-EE-EcCCChhHHHhCCCCCCcEEEEEECCEEEE--EEecccCCCCCCCCCHHHHHHHHHHCCC
Q 028334 118 FV-KI-HAEKSPFLAERLKIVVLPTLALIKNAKVDD--YVVGFDELGGTDEFSTEELEERLAKAQV 179 (210)
Q Consensus 118 f~-~v-d~~~~~~l~~~~~i~~vPtll~~~~G~~v~--~~~G~~~~g~~~~~~~~~L~~~L~~~~~ 179 (210)
|+ .+ |... ...-.+.| +++|+.+.... .+.|... +-+.|..|+...++
T Consensus 158 f~V~~gD~~~------~~~~~~~~-~~~f~pd~~~~~~~f~G~~~-------nf~el~~Wi~dKcv 209 (375)
T KOG0912|consen 158 FLVGFGDLLK------PHEPPGKN-ILVFDPDHSEPNHEFLGSMT-------NFDELKQWIQDKCV 209 (375)
T ss_pred EEeecccccc------CCCCCCCc-eEEeCCCcCCcCcccccccc-------cHHHHHHHHHhcch
Confidence 33 22 2211 11112333 34444443222 3555431 57889999987653
No 332
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=23.98 E-value=2e+02 Score=18.20 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=29.0
Q ss_pred ec-CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCC-hhHHHhCCCCCCcEEEEEECCEE
Q 028334 92 FY-RENWPCKVMDKHMSILAKKHIETRFVKIHAEKS-PFLAERLKIVVLPTLALIKNAKV 149 (210)
Q Consensus 92 fy-~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~-~~l~~~~~i~~vPtll~~~~G~~ 149 (210)
+| +-|+.|+...-.+....-. +.+..++.+.. +.+........+|++. .+|..
T Consensus 5 y~~~~~~~~~~v~~~L~~~~i~---~e~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 59 (73)
T cd03076 5 TYFPVRGRAEAIRLLLADQGIS---WEEERVTYEEWQESLKPKMLFGQLPCFK--DGDLT 59 (73)
T ss_pred EEeCCcchHHHHHHHHHHcCCC---CEEEEecHHHhhhhhhccCCCCCCCEEE--ECCEE
Confidence 45 7789998776666555332 34444444322 2233333456799984 35643
No 333
>COG3411 Ferredoxin [Energy production and conversion]
Probab=23.75 E-value=1.5e+02 Score=19.22 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=18.8
Q ss_pred CCcEEEEEECCEEEEEEecccCCCCCCCCCHHHHHHHHHHC
Q 028334 137 VLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKA 177 (210)
Q Consensus 137 ~vPtll~~~~G~~v~~~~G~~~~g~~~~~~~~~L~~~L~~~ 177 (210)
.=|++++|.+|.- +.+. +++...+.+++|
T Consensus 16 ~gPvl~vYpegvW---Y~~V---------~p~~a~rIv~~h 44 (64)
T COG3411 16 DGPVLVVYPEGVW---YTRV---------DPEDARRIVQSH 44 (64)
T ss_pred cCCEEEEecCCee---Eecc---------CHHHHHHHHHHH
Confidence 5699999999932 2222 466666666654
No 334
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=23.11 E-value=2.9e+02 Score=19.80 Aligned_cols=83 Identities=19% Similarity=0.091 Sum_probs=48.2
Q ss_pred CcEEEEec-C-CChhhHHHHHHHHHHHHHcCC--eEEEEE-EcCCCh-----------hHHHhCCCCCCc-EEEEE-ECC
Q 028334 86 DRVVCHFY-R-ENWPCKVMDKHMSILAKKHIE--TRFVKI-HAEKSP-----------FLAERLKIVVLP-TLALI-KNA 147 (210)
Q Consensus 86 ~~vvV~fy-~-wC~~C~~~~~~l~~la~~~~~--v~f~~v-d~~~~~-----------~l~~~~~i~~vP-tll~~-~~G 147 (210)
..+||.|. + ..+.-+.....|..-...+.. +.++.+ +..... .+.+.|++..-. +++++ ++|
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 34777777 3 344445555566553333433 544444 322223 678888865333 33444 799
Q ss_pred EEEEEEecccCCCCCCCCCHHHHHHHHHH
Q 028334 148 KVDDYVVGFDELGGTDEFSTEELEERLAK 176 (210)
Q Consensus 148 ~~v~~~~G~~~~g~~~~~~~~~L~~~L~~ 176 (210)
.+..++.... +.+.|-..+..
T Consensus 90 ~vK~r~~~p~--------~~~~lf~~ID~ 110 (118)
T PF13778_consen 90 GVKLRWPEPI--------DPEELFDTIDA 110 (118)
T ss_pred cEEEecCCCC--------CHHHHHHHHhC
Confidence 9988876655 78888777654
No 335
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=21.96 E-value=1.9e+02 Score=24.32 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHhcCCcEEEEec-CCChhhHHHHHHHHHHHHHcCCeEEEE
Q 028334 78 FFSVVKASDRVVCHFY-RENWPCKVMDKHMSILAKKHIETRFVK 120 (210)
Q Consensus 78 f~~~v~~~~~vvV~fy-~wC~~C~~~~~~l~~la~~~~~v~f~~ 120 (210)
+.+.+.....-|.+.| +.-|||.... ++|.+.||+++|.-
T Consensus 128 LI~~v~~~gvnvteiyVDTVGpp~~Yq---~kLek~FP~~k~tV 168 (301)
T KOG2299|consen 128 LIDEVLDQGVNVTEIYVDTVGPPAKYQ---EKLEKRFPGIKFTV 168 (301)
T ss_pred HHHHHHHhCCceEEEEEecCCChHHHH---HHHHhhCCCeEEEE
Confidence 4444455566788899 9999999876 55667799988863
No 336
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.61 E-value=54 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=15.4
Q ss_pred hcCCcEEEEec--CCChhhHHHHHHH
Q 028334 83 KASDRVVCHFY--RENWPCKVMDKHM 106 (210)
Q Consensus 83 ~~~~~vvV~fy--~wC~~C~~~~~~l 106 (210)
+.+++||++|| ..-+-|....--|
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgF 113 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGF 113 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccc
Confidence 44446888888 5567776655444
No 337
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=21.49 E-value=1.9e+02 Score=23.39 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceeecCChhhHHHHHhcCCc--EEEEec-CCChhhHHHH--HHHHHHH---HHcCC-
Q 028334 45 ERRLQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDR--VVCHFY-RENWPCKVMD--KHMSILA---KKHIE- 115 (210)
Q Consensus 45 ~~Rl~el~~~~~~~~~~~~~~~~~v~~i~t~~~f~~~v~~~~~--vvV~fy-~wC~~C~~~~--~~l~~la---~~~~~- 115 (210)
++|+.++=+.+....- .-.-..+ +.+++...+..+.+ ++|+.+ =.|..|+... +...... ..|.|
T Consensus 89 ~~RV~~lF~~A~~~gi-----~V~~rsv-s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GH 162 (212)
T PF09778_consen 89 ENRVNRLFQKAKAAGI-----NVEKRSV-SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGH 162 (212)
T ss_pred HHHHHHHHHHHHHcCC-----ceEEeec-cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEE
Confidence 4666666666654211 1124457 88999999988888 777777 7888884322 2222222 12444
Q ss_pred -eEEEEEEcCCC
Q 028334 116 -TRFVKIHAEKS 126 (210)
Q Consensus 116 -v~f~~vd~~~~ 126 (210)
+.++-.|....
T Consensus 163 YVVlcGyd~~~~ 174 (212)
T PF09778_consen 163 YVVLCGYDAATK 174 (212)
T ss_pred EEEEEeecCCCC
Confidence 66666666543
No 338
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=21.22 E-value=2.4e+02 Score=18.23 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=25.0
Q ss_pred CCChhhHHHHHHHHHHHHHcCCeEEEEEEcCCChhHH---HhCCCCCCcEEE
Q 028334 94 RENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLA---ERLKIVVLPTLA 142 (210)
Q Consensus 94 ~wC~~C~~~~~~l~~la~~~~~v~f~~vd~~~~~~l~---~~~~i~~vPtll 142 (210)
+||+.|.+..-.|....-. ..+..++........ +.-+...+|++.
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 62 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLE---YKTVPVEFPDIPPILGELTSGGFYTVPVIV 62 (84)
T ss_pred CcCChhHHHHHHHHhCCCC---CeEEEecCCCcccccccccCCCCceeCeEE
Confidence 6889999877666554322 334444543322211 222356789874
No 339
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=20.92 E-value=1.2e+02 Score=22.16 Aligned_cols=19 Identities=0% Similarity=-0.200 Sum_probs=14.4
Q ss_pred Eec-CCChhhHHHHHHHHHH
Q 028334 91 HFY-RENWPCKVMDKHMSIL 109 (210)
Q Consensus 91 ~fy-~wC~~C~~~~~~l~~l 109 (210)
.|+ |.|..|+.....|++-
T Consensus 5 iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 5 FYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEeCCCCHHHHHHHHHHHHC
Confidence 344 9999999987766554
No 340
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.74 E-value=1.4e+02 Score=21.09 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=35.3
Q ss_pred CCceeecCChhhHHH----HHhcCCcEEEEe----------c-CC-Chh--hHHHHHHHHHH---HHHcCC--eEEEEEE
Q 028334 66 HGDYSEIQAEKDFFS----VVKASDRVVCHF----------Y-RE-NWP--CKVMDKHMSIL---AKKHIE--TRFVKIH 122 (210)
Q Consensus 66 ~~~v~~i~t~~~f~~----~v~~~~~vvV~f----------y-~w-C~~--C~~~~~~l~~l---a~~~~~--v~f~~vd 122 (210)
++-+..+ |.+++.+ .+.++-.+-|.| | .| ++. |.....+|.++ .+.||+ |+++.+|
T Consensus 6 ~sylp~l-t~~~i~~QI~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 6 FSYLPPL-TDEQIAKQIDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred cccCCCC-CHHHHHHHHHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 4445555 5544443 334444444444 5 65 555 67666666555 556888 8999888
Q ss_pred cCCC
Q 028334 123 AEKS 126 (210)
Q Consensus 123 ~~~~ 126 (210)
....
T Consensus 85 ~~~q 88 (99)
T cd03527 85 NYKQ 88 (99)
T ss_pred CCcc
Confidence 7643
No 341
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.30 E-value=5.4e+02 Score=21.88 Aligned_cols=54 Identities=4% Similarity=-0.022 Sum_probs=33.3
Q ss_pred CCCceeecCChhhHHHHHhcCCc-EEEEec-CCChhhHHHHHHHHHHHHHc-CCeEEE
Q 028334 65 GHGDYSEIQAEKDFFSVVKASDR-VVCHFY-RENWPCKVMDKHMSILAKKH-IETRFV 119 (210)
Q Consensus 65 ~~~~v~~i~t~~~f~~~v~~~~~-vvV~fy-~wC~~C~~~~~~l~~la~~~-~~v~f~ 119 (210)
..|.+.+|+...+|.....+.-. +-|..+ -+|+.- .+-..+.+|..+| |++.++
T Consensus 104 ~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~-eqp~~i~~Ll~~~~PDIlVi 160 (287)
T PF05582_consen 104 RPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEK-EQPEKIYRLLEEYRPDILVI 160 (287)
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechH-HhhHHHHHHHHHcCCCEEEE
Confidence 35789999778888887655433 444445 555543 3444566666665 455544
Done!