BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028335
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
 pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
          Length = 281

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 12/75 (16%)

Query: 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDL------ 172
           L+ GK + ELG+G GLV  +A L GA QV+ TD PD   L   ++E+N+R          
Sbjct: 77  LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEIL--NSLESNIREHTANSCSSE 134

Query: 173 ---RGSAVVTELTWG 184
              R S  V    WG
Sbjct: 135 TVKRASPKVVPYRWG 149


>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
           (Apc5513)
 pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
           (Apc5513)
          Length = 200

 Score = 31.2 bits (69), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 123 GKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKN 162
           G+ +++ G+G G++ C + LLGA+ V   D+ PD +   K+N
Sbjct: 52  GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN 93


>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
 pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
 pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
 pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
          Length = 376

 Score = 28.9 bits (63), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 112 HAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVIL----TDLPDRLRLLKKNIENNL 167
           +AV        GK ++++G+G G++   +A  GA+ +     T + D  R L K   NNL
Sbjct: 53  NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVK--ANNL 110

Query: 168 RH 169
            H
Sbjct: 111 DH 112


>pdb|1EAH|2 Chain 2, Pv2l Complexed With Antiviral Agent Sch48973
          Length = 271

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 72  RIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS 116
            I+ACG+S+ ++Q   +LG   +T     +S V  G++ E+  DS
Sbjct: 3   NIEACGYSVRVMQ--LTLGNSTITTQEAANSVVAYGRWPEYIKDS 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,896,241
Number of Sequences: 62578
Number of extensions: 173720
Number of successful extensions: 454
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 9
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)