Query 028335
Match_columns 210
No_of_seqs 319 out of 2217
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.9 1.2E-24 2.5E-29 172.1 7.4 125 78-209 4-133 (173)
2 KOG2793 Putative N2,N2-dimethy 99.6 3.3E-15 7.1E-20 123.3 10.9 117 94-210 51-177 (248)
3 COG2264 PrmA Ribosomal protein 99.6 3.2E-15 6.9E-20 126.4 8.7 128 59-202 94-236 (300)
4 COG3897 Predicted methyltransf 99.6 2.5E-15 5.5E-20 118.6 4.2 102 92-209 53-156 (218)
5 PF06325 PrmA: Ribosomal prote 99.5 3.4E-14 7.3E-19 120.8 8.5 127 59-202 93-232 (295)
6 PF05175 MTS: Methyltransferas 99.5 6.9E-13 1.5E-17 104.4 12.6 102 80-203 2-106 (170)
7 TIGR00406 prmA ribosomal prote 99.3 2.8E-11 6E-16 103.0 11.4 128 60-202 92-232 (288)
8 COG2813 RsmC 16S RNA G1207 met 99.3 7.3E-11 1.6E-15 99.6 13.3 146 9-169 50-208 (300)
9 PF12847 Methyltransf_18: Meth 99.3 2.6E-11 5.7E-16 88.0 9.1 75 122-203 1-78 (112)
10 COG4123 Predicted O-methyltran 99.3 2.5E-11 5.4E-16 100.4 9.2 111 76-207 14-127 (248)
11 PRK15001 SAM-dependent 23S rib 99.2 1.4E-10 3.1E-15 101.8 13.0 116 69-203 188-306 (378)
12 PRK00517 prmA ribosomal protei 99.2 5.5E-11 1.2E-15 99.1 9.9 104 59-168 52-167 (250)
13 COG2227 UbiG 2-polyprenyl-3-me 99.2 2.2E-11 4.7E-16 99.5 5.2 77 121-206 58-135 (243)
14 PF13847 Methyltransf_31: Meth 99.2 1.8E-10 3.9E-15 88.7 9.2 79 122-207 3-85 (152)
15 COG2263 Predicted RNA methylas 99.2 2.3E-10 5.1E-15 90.3 9.4 73 119-197 42-119 (198)
16 KOG1270 Methyltransferases [Co 99.1 5.4E-11 1.2E-15 98.2 5.5 81 121-206 88-169 (282)
17 KOG3201 Uncharacterized conser 99.1 1.3E-11 2.9E-16 94.9 1.3 108 94-208 4-116 (201)
18 PRK11207 tellurite resistance 99.1 5.7E-10 1.2E-14 89.8 10.3 78 121-207 29-107 (197)
19 PLN02585 magnesium protoporphy 99.1 1.8E-09 3.8E-14 93.0 12.9 81 121-207 143-224 (315)
20 COG2890 HemK Methylase of poly 99.1 7.8E-10 1.7E-14 93.7 10.3 68 125-202 113-183 (280)
21 PRK00107 gidB 16S rRNA methylt 99.1 1E-09 2.2E-14 87.8 9.9 73 122-203 45-120 (187)
22 TIGR00477 tehB tellurite resis 99.0 1.3E-09 2.9E-14 87.5 9.5 77 121-207 29-106 (195)
23 TIGR02021 BchM-ChlM magnesium 99.0 1.2E-09 2.7E-14 89.0 9.0 77 121-207 54-131 (219)
24 TIGR00537 hemK_rel_arch HemK-r 99.0 3E-09 6.6E-14 84.1 11.0 73 121-204 18-91 (179)
25 PLN02396 hexaprenyldihydroxybe 99.0 6.8E-10 1.5E-14 95.8 7.7 80 121-207 130-210 (322)
26 PRK11036 putative S-adenosyl-L 99.0 9E-10 1.9E-14 91.9 7.3 80 122-207 44-124 (255)
27 PRK12335 tellurite resistance 99.0 2.3E-09 5E-14 91.1 9.3 76 121-206 119-195 (287)
28 TIGR00138 gidB 16S rRNA methyl 99.0 2.7E-09 5.9E-14 84.8 8.8 73 121-202 41-116 (181)
29 KOG1499 Protein arginine N-met 99.0 1.8E-09 4E-14 92.5 8.0 79 117-202 55-134 (346)
30 PF03848 TehB: Tellurite resis 99.0 4.4E-09 9.6E-14 84.2 9.3 76 120-205 28-104 (192)
31 PRK14967 putative methyltransf 99.0 1.1E-08 2.4E-13 83.8 11.7 86 102-202 21-108 (223)
32 PRK13168 rumA 23S rRNA m(5)U19 98.9 1.3E-08 2.8E-13 91.5 11.7 90 103-201 282-373 (443)
33 TIGR00080 pimt protein-L-isoas 98.9 1.6E-08 3.5E-13 82.3 11.1 76 120-203 75-154 (215)
34 PRK07580 Mg-protoporphyrin IX 98.9 8.1E-09 1.7E-13 84.3 9.2 76 121-206 62-138 (230)
35 PLN02244 tocopherol O-methyltr 98.9 1E-08 2.2E-13 89.2 10.0 80 121-207 117-198 (340)
36 PRK13944 protein-L-isoaspartat 98.9 2.6E-08 5.7E-13 80.6 11.8 78 121-205 71-152 (205)
37 PF13659 Methyltransf_26: Meth 98.9 2E-09 4.2E-14 78.8 4.6 76 123-203 1-78 (117)
38 PRK09489 rsmC 16S ribosomal RN 98.9 2.4E-08 5.2E-13 86.9 11.9 103 79-205 166-271 (342)
39 PRK14968 putative methyltransf 98.9 2.9E-08 6.4E-13 78.3 10.8 90 100-204 9-99 (188)
40 PRK03522 rumB 23S rRNA methylu 98.9 2.9E-08 6.2E-13 85.5 11.3 73 122-201 173-246 (315)
41 TIGR03533 L3_gln_methyl protei 98.9 1.4E-08 3.1E-13 86.2 9.3 73 122-202 121-196 (284)
42 PRK15068 tRNA mo(5)U34 methylt 98.8 2.6E-08 5.7E-13 86.1 10.7 80 121-208 121-202 (322)
43 COG2230 Cfa Cyclopropane fatty 98.8 1.7E-08 3.7E-13 85.1 8.7 77 119-205 69-147 (283)
44 PRK14966 unknown domain/N5-glu 98.8 3E-08 6.6E-13 87.8 10.6 88 102-203 237-327 (423)
45 PRK13942 protein-L-isoaspartat 98.8 5.7E-08 1.2E-12 79.1 11.3 89 103-203 61-153 (212)
46 PF08241 Methyltransf_11: Meth 98.8 9.1E-09 2E-13 71.7 5.7 70 127-207 1-72 (95)
47 PRK10909 rsmD 16S rRNA m(2)G96 98.8 1.4E-08 3.1E-13 81.9 7.5 58 121-183 52-111 (199)
48 TIGR03587 Pse_Me-ase pseudamin 98.8 3.1E-08 6.7E-13 80.2 9.1 73 121-207 42-117 (204)
49 TIGR00452 methyltransferase, p 98.8 4E-08 8.8E-13 84.5 10.2 96 100-208 104-201 (314)
50 PF05401 NodS: Nodulation prot 98.8 1.1E-08 2.4E-13 81.6 6.1 73 124-207 45-118 (201)
51 COG2518 Pcm Protein-L-isoaspar 98.8 6.9E-08 1.5E-12 77.9 10.7 75 120-202 70-145 (209)
52 PF02353 CMAS: Mycolic acid cy 98.8 3.7E-08 7.9E-13 83.3 9.5 77 120-206 60-138 (273)
53 KOG3420 Predicted RNA methylas 98.8 5.9E-09 1.3E-13 79.1 4.1 67 103-169 29-97 (185)
54 TIGR00095 RNA methyltransferas 98.8 1.8E-08 3.8E-13 80.7 7.1 49 121-169 48-98 (189)
55 TIGR02085 meth_trns_rumB 23S r 98.8 6.8E-08 1.5E-12 85.1 11.4 57 122-183 233-290 (374)
56 TIGR02469 CbiT precorrin-6Y C5 98.8 8E-08 1.7E-12 70.4 9.7 75 122-203 19-96 (124)
57 PRK08287 cobalt-precorrin-6Y C 98.8 6.2E-08 1.3E-12 77.1 9.6 73 121-203 30-105 (187)
58 PRK11805 N5-glutamine S-adenos 98.8 3.7E-08 8E-13 84.6 8.9 71 124-202 135-208 (307)
59 PRK00312 pcm protein-L-isoaspa 98.8 1.2E-07 2.5E-12 77.0 11.4 75 121-203 77-152 (212)
60 PF08003 Methyltransf_9: Prote 98.8 5.3E-08 1.2E-12 82.5 9.4 83 120-210 113-197 (315)
61 TIGR00536 hemK_fam HemK family 98.8 4.7E-08 1E-12 83.0 9.2 71 124-202 116-189 (284)
62 PRK00377 cbiT cobalt-precorrin 98.8 5.7E-08 1.2E-12 78.1 9.2 76 120-201 38-117 (198)
63 PRK06202 hypothetical protein; 98.8 2.4E-08 5.2E-13 82.1 7.2 75 122-207 60-141 (232)
64 PRK11727 23S rRNA mA1618 methy 98.7 3.9E-08 8.5E-13 84.7 8.6 81 122-206 114-200 (321)
65 PF13649 Methyltransf_25: Meth 98.7 2.2E-08 4.8E-13 71.7 6.0 70 126-204 1-76 (101)
66 KOG2904 Predicted methyltransf 98.7 1E-07 2.2E-12 79.4 10.4 77 100-182 128-207 (328)
67 TIGR01983 UbiG ubiquinone bios 98.7 7.2E-08 1.6E-12 78.4 9.5 98 103-207 26-124 (224)
68 PRK05031 tRNA (uracil-5-)-meth 98.7 1E-07 2.2E-12 83.7 10.7 91 77-183 172-263 (362)
69 KOG2920 Predicted methyltransf 98.7 9.5E-09 2.1E-13 86.0 3.7 110 96-209 91-210 (282)
70 PLN02336 phosphoethanolamine N 98.7 1E-07 2.2E-12 86.3 10.4 77 122-207 266-344 (475)
71 TIGR02752 MenG_heptapren 2-hep 98.7 1.3E-07 2.8E-12 77.4 10.1 77 121-205 44-124 (231)
72 TIGR03704 PrmC_rel_meth putati 98.7 7.4E-08 1.6E-12 80.5 8.6 45 123-167 87-134 (251)
73 TIGR00479 rumA 23S rRNA (uraci 98.7 1.5E-07 3.3E-12 84.3 10.8 75 122-201 292-368 (431)
74 KOG1271 Methyltransferases [Ge 98.7 1.2E-07 2.6E-12 74.7 8.6 93 101-201 46-142 (227)
75 PRK15451 tRNA cmo(5)U34 methyl 98.7 1.3E-07 2.8E-12 78.7 9.5 75 122-205 56-135 (247)
76 PRK01544 bifunctional N5-gluta 98.7 7.3E-08 1.6E-12 88.0 8.7 72 122-201 138-212 (506)
77 PRK05134 bifunctional 3-demeth 98.7 1.3E-07 2.8E-12 77.6 9.2 79 121-207 47-126 (233)
78 PRK00121 trmB tRNA (guanine-N( 98.7 4.5E-08 9.8E-13 79.1 6.3 75 122-202 40-118 (202)
79 COG2226 UbiE Methylase involve 98.7 1.1E-07 2.4E-12 78.6 8.4 76 122-205 51-129 (238)
80 TIGR03534 RF_mod_PrmC protein- 98.7 2.3E-07 5E-12 76.6 10.4 88 101-202 71-161 (251)
81 PF01209 Ubie_methyltran: ubiE 98.7 1.8E-07 3.9E-12 77.3 9.5 78 121-206 46-127 (233)
82 PRK09328 N5-glutamine S-adenos 98.6 2.7E-07 5.9E-12 77.4 10.7 73 121-202 107-182 (275)
83 PTZ00098 phosphoethanolamine N 98.6 1.3E-07 2.7E-12 79.5 8.6 77 121-207 51-129 (263)
84 PRK11783 rlmL 23S rRNA m(2)G24 98.6 4.7E-08 1E-12 92.5 6.7 76 121-201 537-614 (702)
85 PF08242 Methyltransf_12: Meth 98.6 3.5E-09 7.5E-14 75.4 -0.7 75 127-207 1-78 (99)
86 PRK04148 hypothetical protein; 98.6 1.6E-07 3.4E-12 70.9 8.0 54 105-162 3-58 (134)
87 PRK11873 arsM arsenite S-adeno 98.6 1.8E-07 4E-12 78.6 9.4 78 121-206 76-157 (272)
88 PLN02233 ubiquinone biosynthes 98.6 1.6E-07 3.4E-12 78.9 8.6 82 121-207 72-157 (261)
89 PRK15128 23S rRNA m(5)C1962 me 98.6 7E-08 1.5E-12 85.6 6.8 78 121-201 219-299 (396)
90 PLN02781 Probable caffeoyl-CoA 98.6 1.2E-07 2.6E-12 78.4 7.7 77 121-201 67-150 (234)
91 PRK10258 biotin biosynthesis p 98.6 1.2E-07 2.5E-12 78.8 7.7 72 122-206 42-114 (251)
92 PLN02672 methionine S-methyltr 98.6 1.1E-07 2.5E-12 92.7 8.6 96 102-202 101-210 (1082)
93 TIGR00740 methyltransferase, p 98.6 2.3E-07 4.9E-12 76.6 9.2 76 122-206 53-133 (239)
94 PRK00216 ubiE ubiquinone/menaq 98.6 2.5E-07 5.3E-12 75.6 9.2 78 122-206 51-132 (239)
95 TIGR02143 trmA_only tRNA (urac 98.6 7E-07 1.5E-11 78.1 12.4 91 77-183 163-254 (353)
96 PF13489 Methyltransf_23: Meth 98.6 1.3E-07 2.8E-12 72.4 6.9 69 121-207 21-90 (161)
97 smart00828 PKS_MT Methyltransf 98.6 2E-07 4.3E-12 76.0 8.4 76 124-207 1-79 (224)
98 PRK05785 hypothetical protein; 98.6 1.1E-07 2.3E-12 78.3 6.6 70 122-207 51-122 (226)
99 smart00650 rADc Ribosomal RNA 98.6 2.2E-07 4.7E-12 72.8 8.0 76 121-207 12-88 (169)
100 PRK01683 trans-aconitate 2-met 98.6 5E-07 1.1E-11 75.2 10.3 72 121-206 30-104 (258)
101 COG2242 CobL Precorrin-6B meth 98.6 4.8E-07 1E-11 71.7 9.4 58 120-182 32-92 (187)
102 PRK14103 trans-aconitate 2-met 98.6 1.8E-07 3.9E-12 78.0 7.3 71 121-207 28-101 (255)
103 PF01135 PCMT: Protein-L-isoas 98.6 4.2E-07 9.1E-12 73.9 8.9 76 120-203 70-149 (209)
104 PF03602 Cons_hypoth95: Conser 98.5 1.7E-07 3.7E-12 74.7 6.3 49 121-169 41-91 (183)
105 TIGR01177 conserved hypothetic 98.5 7.8E-07 1.7E-11 77.0 10.5 73 121-201 181-254 (329)
106 PRK13943 protein-L-isoaspartat 98.5 7.7E-07 1.7E-11 76.9 10.3 74 121-202 79-156 (322)
107 KOG1500 Protein arginine N-met 98.5 4.2E-07 9.1E-12 77.8 8.3 79 117-203 172-251 (517)
108 TIGR00091 tRNA (guanine-N(7)-) 98.5 2.6E-07 5.6E-12 74.1 6.2 75 122-201 16-93 (194)
109 PRK11705 cyclopropane fatty ac 98.5 8.7E-07 1.9E-11 78.4 10.1 73 120-206 165-239 (383)
110 TIGR02716 C20_methyl_CrtF C-20 98.5 8.4E-07 1.8E-11 75.9 9.4 78 121-207 148-227 (306)
111 TIGR03840 TMPT_Se_Te thiopurin 98.5 1.7E-06 3.6E-11 70.6 10.6 53 102-159 19-72 (213)
112 PF07021 MetW: Methionine bios 98.5 4E-07 8.7E-12 72.5 6.7 71 122-205 13-85 (193)
113 PRK07402 precorrin-6B methylas 98.5 9E-07 1.9E-11 70.9 8.8 49 121-169 39-90 (196)
114 PRK14902 16S rRNA methyltransf 98.5 4.6E-06 1E-10 75.1 14.3 74 121-201 249-326 (444)
115 PLN02490 MPBQ/MSBQ methyltrans 98.5 3.9E-07 8.4E-12 79.2 7.1 75 122-207 113-190 (340)
116 COG2265 TrmA SAM-dependent met 98.5 7.3E-07 1.6E-11 79.8 8.9 72 103-183 278-350 (432)
117 PF02475 Met_10: Met-10+ like- 98.4 6E-07 1.3E-11 72.5 7.2 75 120-202 99-176 (200)
118 PRK08317 hypothetical protein; 98.4 2.2E-06 4.8E-11 69.6 10.6 78 120-206 17-98 (241)
119 TIGR02072 BioC biotin biosynth 98.4 8.5E-07 1.8E-11 72.2 8.2 75 121-207 33-110 (240)
120 PRK04266 fibrillarin; Provisio 98.4 2.3E-06 4.9E-11 70.4 10.7 46 120-165 70-118 (226)
121 PHA03412 putative methyltransf 98.4 2E-07 4.3E-12 76.8 4.3 43 122-164 49-97 (241)
122 PF05958 tRNA_U5-meth_tr: tRNA 98.4 1.1E-06 2.5E-11 76.8 9.3 91 76-182 161-252 (352)
123 PRK14896 ksgA 16S ribosomal RN 98.4 1.7E-06 3.8E-11 72.4 9.9 46 120-165 27-73 (258)
124 PTZ00338 dimethyladenosine tra 98.4 1.7E-06 3.7E-11 73.9 9.8 77 121-207 35-112 (294)
125 COG0742 N6-adenine-specific me 98.4 1.1E-06 2.3E-11 69.9 7.7 49 121-169 42-92 (187)
126 PRK10901 16S rRNA methyltransf 98.4 2.2E-06 4.8E-11 76.8 10.6 73 121-200 243-318 (427)
127 PRK14904 16S rRNA methyltransf 98.4 3.5E-06 7.5E-11 75.9 11.8 89 97-201 232-324 (445)
128 PRK14903 16S rRNA methyltransf 98.4 8.2E-06 1.8E-10 73.3 13.6 74 121-201 236-313 (431)
129 PLN02336 phosphoethanolamine N 98.4 1.3E-06 2.8E-11 79.2 8.5 78 122-207 37-115 (475)
130 PRK00274 ksgA 16S ribosomal RN 98.4 1.6E-06 3.6E-11 73.1 8.6 44 121-164 41-85 (272)
131 KOG2187 tRNA uracil-5-methyltr 98.4 1.4E-06 3.1E-11 78.1 8.5 92 73-181 346-438 (534)
132 PRK06922 hypothetical protein; 98.3 1.7E-06 3.6E-11 80.5 8.3 78 121-205 417-497 (677)
133 COG1092 Predicted SAM-dependen 98.3 4.3E-07 9.2E-12 80.1 4.0 50 120-169 215-266 (393)
134 TIGR00478 tly hemolysin TlyA f 98.3 1E-06 2.2E-11 72.5 5.8 60 99-162 56-118 (228)
135 cd02440 AdoMet_MTases S-adenos 98.3 3.8E-06 8.3E-11 58.1 7.7 76 125-207 1-78 (107)
136 TIGR00446 nop2p NOL1/NOP2/sun 98.3 5.3E-06 1.1E-10 69.8 9.9 73 121-201 70-146 (264)
137 PRK14901 16S rRNA methyltransf 98.3 5E-06 1.1E-10 74.7 10.3 76 121-201 251-331 (434)
138 PF01596 Methyltransf_3: O-met 98.3 1.1E-06 2.5E-11 71.2 5.5 91 103-201 30-127 (205)
139 PHA03411 putative methyltransf 98.3 7.2E-07 1.6E-11 75.1 4.5 42 122-163 64-108 (279)
140 TIGR02081 metW methionine bios 98.3 3E-06 6.6E-11 67.8 7.9 73 122-207 13-87 (194)
141 PRK13255 thiopurine S-methyltr 98.3 7.2E-06 1.6E-10 67.1 10.1 54 102-160 22-76 (218)
142 TIGR00563 rsmB ribosomal RNA s 98.3 8.3E-06 1.8E-10 73.1 11.0 61 101-169 225-288 (426)
143 PF10672 Methyltrans_SAM: S-ad 98.3 8.1E-07 1.8E-11 75.4 4.2 79 121-202 122-202 (286)
144 PF09445 Methyltransf_15: RNA 98.3 1.7E-06 3.7E-11 67.5 5.6 74 125-202 2-76 (163)
145 PRK04338 N(2),N(2)-dimethylgua 98.3 2E-06 4.3E-11 76.0 6.7 47 123-169 58-107 (382)
146 COG4976 Predicted methyltransf 98.2 2.9E-07 6.4E-12 75.0 1.0 72 123-205 126-198 (287)
147 COG4122 Predicted O-methyltran 98.2 4.8E-06 1E-10 68.0 8.0 76 121-201 58-138 (219)
148 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 8.8E-06 1.9E-10 65.6 9.1 75 122-206 39-117 (223)
149 smart00138 MeTrc Methyltransfe 98.2 6.3E-06 1.4E-10 69.3 8.0 82 122-206 99-214 (264)
150 PLN02476 O-methyltransferase 98.2 5.6E-06 1.2E-10 70.0 7.4 49 121-169 117-169 (278)
151 PRK14121 tRNA (guanine-N(7)-)- 98.2 6.4E-06 1.4E-10 72.6 7.8 74 122-201 122-198 (390)
152 PTZ00146 fibrillarin; Provisio 98.2 2.2E-05 4.8E-10 66.7 10.5 65 96-161 106-175 (293)
153 PRK04457 spermidine synthase; 98.2 4E-06 8.6E-11 70.5 5.9 74 122-201 66-142 (262)
154 KOG3191 Predicted N6-DNA-methy 98.1 6.5E-06 1.4E-10 64.9 6.3 67 102-169 24-94 (209)
155 TIGR03438 probable methyltrans 98.1 1.5E-05 3.3E-10 68.2 9.0 46 122-167 63-112 (301)
156 PLN03075 nicotianamine synthas 98.1 2E-05 4.4E-10 67.1 9.4 79 122-207 123-207 (296)
157 PF05185 PRMT5: PRMT5 arginine 98.1 3.3E-05 7.2E-10 69.6 10.6 72 122-201 186-264 (448)
158 KOG2497 Predicted methyltransf 98.1 6.2E-07 1.3E-11 75.0 -0.5 126 78-208 50-177 (262)
159 PRK00811 spermidine synthase; 98.1 1.4E-05 3E-10 67.9 7.4 78 122-201 76-156 (283)
160 PRK11088 rrmA 23S rRNA methylt 98.0 1.3E-05 2.9E-10 67.5 7.2 68 122-202 85-158 (272)
161 TIGR00755 ksgA dimethyladenosi 98.0 3.1E-05 6.7E-10 64.6 9.1 44 121-164 28-72 (253)
162 COG2520 Predicted methyltransf 98.0 1.7E-05 3.8E-10 68.7 7.0 49 121-169 187-237 (341)
163 COG2519 GCD14 tRNA(1-methylade 98.0 8.5E-05 1.8E-09 61.6 10.1 50 120-169 92-145 (256)
164 PF08704 GCD14: tRNA methyltra 98.0 7.4E-05 1.6E-09 62.2 9.7 76 120-200 38-118 (247)
165 KOG3010 Methyltransferase [Gen 97.9 4.1E-06 8.9E-11 68.7 1.9 76 125-207 36-112 (261)
166 PLN02589 caffeoyl-CoA O-methyl 97.9 3.2E-05 6.9E-10 64.5 6.8 57 121-181 78-138 (247)
167 TIGR01444 fkbM_fam methyltrans 97.9 4.2E-05 9E-10 57.7 6.9 45 125-169 1-48 (143)
168 PRK13256 thiopurine S-methyltr 97.9 0.0001 2.2E-09 60.6 9.5 55 102-161 28-83 (226)
169 PF05971 Methyltransf_10: Prot 97.9 9E-05 1.9E-09 63.2 9.3 82 123-208 103-190 (299)
170 KOG1541 Predicted protein carb 97.9 3.7E-05 8E-10 62.6 6.5 40 122-161 50-90 (270)
171 TIGR00308 TRM1 tRNA(guanine-26 97.9 2.1E-05 4.5E-10 69.4 5.5 46 124-169 46-95 (374)
172 PRK11188 rrmJ 23S rRNA methylt 97.8 5E-05 1.1E-09 61.7 5.9 68 121-203 50-125 (209)
173 PHA01634 hypothetical protein 97.8 0.00021 4.5E-09 53.4 8.1 52 118-169 24-77 (156)
174 KOG0820 Ribosomal RNA adenine 97.7 0.00026 5.7E-09 59.3 9.6 80 95-183 36-116 (315)
175 TIGR00438 rrmJ cell division p 97.7 8.2E-05 1.8E-09 59.1 6.0 35 120-154 30-68 (188)
176 KOG4300 Predicted methyltransf 97.7 9.9E-05 2.2E-09 59.5 5.9 78 125-209 79-159 (252)
177 COG4076 Predicted RNA methylas 97.7 5.3E-05 1.2E-09 60.2 4.3 48 122-169 32-80 (252)
178 TIGR00417 speE spermidine synt 97.7 0.00017 3.6E-09 60.8 7.4 77 122-201 72-151 (270)
179 PF01170 UPF0020: Putative RNA 97.6 0.00011 2.3E-09 58.3 5.8 74 121-201 27-112 (179)
180 PF02527 GidB: rRNA small subu 97.6 0.0004 8.7E-09 55.4 8.8 68 125-201 51-121 (184)
181 KOG1540 Ubiquinone biosynthesi 97.6 0.00027 5.9E-09 58.7 7.9 77 121-202 99-184 (296)
182 PRK03612 spermidine synthase; 97.6 0.0001 2.2E-09 67.8 6.0 79 122-202 297-380 (521)
183 COG1041 Predicted DNA modifica 97.6 0.00045 9.8E-09 59.9 8.9 50 120-169 195-245 (347)
184 KOG1661 Protein-L-isoaspartate 97.6 0.00043 9.2E-09 56.0 8.1 48 120-167 80-132 (237)
185 PF13679 Methyltransf_32: Meth 97.6 0.0004 8.6E-09 52.8 7.8 47 121-167 24-77 (141)
186 PF06080 DUF938: Protein of un 97.6 0.00035 7.6E-09 56.4 7.7 78 125-206 28-113 (204)
187 PF00891 Methyltransf_2: O-met 97.5 0.00059 1.3E-08 56.2 9.1 69 122-207 100-170 (241)
188 PLN02366 spermidine synthase 97.4 0.00062 1.3E-08 58.6 8.1 78 122-201 91-171 (308)
189 COG0030 KsgA Dimethyladenosine 97.4 0.0006 1.3E-08 57.1 7.7 44 121-164 29-73 (259)
190 PF02390 Methyltransf_4: Putat 97.4 0.00043 9.3E-09 55.7 6.4 55 123-182 18-75 (195)
191 COG0357 GidB Predicted S-adeno 97.4 0.00056 1.2E-08 55.8 6.7 47 123-169 68-117 (215)
192 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.00047 1E-08 65.6 7.0 59 122-184 190-293 (702)
193 KOG2899 Predicted methyltransf 97.3 0.00033 7.2E-09 57.8 4.7 47 120-166 56-105 (288)
194 PRK01581 speE spermidine synth 97.3 0.00054 1.2E-08 60.0 6.3 41 122-162 150-193 (374)
195 COG4106 Tam Trans-aconitate me 97.3 0.00035 7.6E-09 56.8 4.6 41 122-162 30-73 (257)
196 KOG1501 Arginine N-methyltrans 97.3 0.00049 1.1E-08 61.2 5.6 45 125-169 69-115 (636)
197 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0018 3.9E-08 54.3 8.4 55 122-183 30-85 (262)
198 PF02384 N6_Mtase: N-6 DNA Met 97.2 0.0012 2.5E-08 56.6 6.9 49 121-169 45-103 (311)
199 PRK11760 putative 23S rRNA C24 97.2 0.0017 3.7E-08 56.4 7.7 54 101-154 187-243 (357)
200 COG3963 Phospholipid N-methylt 97.1 0.0021 4.6E-08 50.3 7.0 70 89-163 20-93 (194)
201 PF05219 DREV: DREV methyltran 97.1 0.0029 6.2E-08 52.9 8.1 68 121-205 93-161 (265)
202 KOG2361 Predicted methyltransf 97.1 0.001 2.2E-08 54.9 5.1 74 125-204 74-153 (264)
203 PF04816 DUF633: Family of unk 97.0 0.0033 7.1E-08 51.0 7.9 71 126-203 1-74 (205)
204 PF05724 TPMT: Thiopurine S-me 97.0 0.0014 3E-08 53.6 5.5 53 102-159 22-75 (218)
205 PRK00050 16S rRNA m(4)C1402 me 97.0 0.0014 3.1E-08 56.0 5.6 45 121-165 18-66 (296)
206 PRK11933 yebU rRNA (cytosine-C 96.9 0.0067 1.5E-07 55.2 9.5 49 121-169 112-164 (470)
207 TIGR02987 met_A_Alw26 type II 96.9 0.0032 7E-08 57.9 7.4 46 122-167 31-87 (524)
208 PF07757 AdoMet_MTase: Predict 96.8 0.0022 4.9E-08 46.4 4.4 49 104-152 40-88 (112)
209 PLN02823 spermine synthase 96.7 0.0044 9.6E-08 54.0 6.5 77 122-201 103-182 (336)
210 PRK10742 putative methyltransf 96.6 0.0071 1.5E-07 50.3 6.7 45 122-166 86-133 (250)
211 COG0116 Predicted N6-adenine-s 96.5 0.039 8.3E-07 48.7 10.8 59 122-184 191-291 (381)
212 PF09243 Rsm22: Mitochondrial 96.5 0.015 3.2E-07 49.2 8.0 45 120-164 31-79 (274)
213 COG0144 Sun tRNA and rRNA cyto 96.4 0.038 8.3E-07 48.5 10.4 49 121-169 155-208 (355)
214 PF03291 Pox_MCEL: mRNA cappin 96.3 0.0087 1.9E-07 52.1 5.6 61 100-164 44-106 (331)
215 COG0220 Predicted S-adenosylme 96.3 0.01 2.3E-07 48.8 5.8 45 124-168 50-97 (227)
216 COG2521 Predicted archaeal met 96.2 0.0018 4E-08 53.3 1.1 74 122-201 134-211 (287)
217 cd00315 Cyt_C5_DNA_methylase C 96.1 0.014 3.1E-07 49.3 6.2 40 125-164 2-43 (275)
218 KOG2078 tRNA modification enzy 96.1 0.0059 1.3E-07 54.2 3.8 72 93-169 225-297 (495)
219 KOG1663 O-methyltransferase [S 96.1 0.024 5.2E-07 46.5 6.9 50 120-169 71-124 (237)
220 PF11599 AviRa: RRNA methyltra 95.9 0.024 5.3E-07 46.2 6.3 71 90-165 24-99 (246)
221 COG2384 Predicted SAM-dependen 95.9 0.081 1.7E-06 43.2 9.2 75 122-203 16-93 (226)
222 COG1189 Predicted rRNA methyla 95.7 0.03 6.5E-07 46.2 6.1 48 101-152 62-110 (245)
223 KOG2730 Methylase [General fun 95.7 0.016 3.4E-07 47.4 4.3 61 122-186 94-155 (263)
224 PF12147 Methyltransf_20: Puta 95.6 0.16 3.4E-06 43.4 10.0 78 123-204 136-218 (311)
225 PF08123 DOT1: Histone methyla 95.5 0.048 1E-06 44.2 6.7 45 120-164 40-87 (205)
226 PF01555 N6_N4_Mtase: DNA meth 95.5 0.052 1.1E-06 43.5 6.6 54 103-161 177-231 (231)
227 PRK00536 speE spermidine synth 95.3 0.078 1.7E-06 44.6 7.2 79 122-208 72-151 (262)
228 KOG2915 tRNA(1-methyladenosine 95.2 0.24 5.3E-06 41.8 9.7 59 120-182 103-165 (314)
229 PRK01544 bifunctional N5-gluta 95.0 0.055 1.2E-06 49.8 6.2 47 122-168 347-396 (506)
230 KOG0024 Sorbitol dehydrogenase 95.0 0.045 9.8E-07 47.2 5.1 42 120-161 167-212 (354)
231 COG1352 CheR Methylase of chem 94.9 0.28 6E-06 41.5 9.4 40 123-162 97-148 (268)
232 PF01861 DUF43: Protein of unk 94.8 0.3 6.5E-06 40.5 9.3 93 96-201 23-118 (243)
233 PF02005 TRM: N2,N2-dimethylgu 94.8 0.045 9.7E-07 48.5 4.8 47 123-169 50-100 (377)
234 PRK11524 putative methyltransf 94.7 0.12 2.6E-06 43.8 7.1 45 121-165 207-252 (284)
235 PF01728 FtsJ: FtsJ-like methy 94.7 0.036 7.9E-07 43.5 3.5 49 102-154 5-59 (181)
236 KOG1227 Putative methyltransfe 94.6 0.036 7.8E-07 47.3 3.4 48 122-169 194-244 (351)
237 PRK13699 putative methylase; P 94.2 0.23 5.1E-06 40.8 7.4 46 121-166 162-208 (227)
238 PF07091 FmrO: Ribosomal RNA m 94.1 0.29 6.4E-06 40.8 7.8 48 122-169 105-155 (251)
239 KOG1975 mRNA cap methyltransfe 94.0 0.1 2.2E-06 45.2 5.0 44 122-165 117-162 (389)
240 PF05891 Methyltransf_PK: AdoM 94.0 0.077 1.7E-06 43.3 4.1 44 122-165 55-100 (218)
241 KOG2671 Putative RNA methylase 93.9 0.059 1.3E-06 46.9 3.4 76 121-201 207-290 (421)
242 COG0500 SmtA SAM-dependent met 93.8 0.7 1.5E-05 32.8 8.6 36 126-162 52-91 (257)
243 PF01564 Spermine_synth: Sperm 93.7 0.1 2.2E-06 43.5 4.3 45 122-166 76-123 (246)
244 COG3129 Predicted SAM-dependen 93.7 0.21 4.6E-06 41.3 6.0 48 122-169 78-129 (292)
245 PRK10611 chemotaxis methyltran 93.7 0.1 2.2E-06 44.5 4.5 39 124-162 117-166 (287)
246 COG0421 SpeE Spermidine syntha 93.5 0.24 5.2E-06 42.1 6.5 43 124-166 78-123 (282)
247 PF03141 Methyltransf_29: Puta 93.1 0.15 3.3E-06 46.4 4.9 50 98-150 93-145 (506)
248 PF00145 DNA_methylase: C-5 cy 92.9 0.25 5.5E-06 41.8 5.8 40 125-164 2-43 (335)
249 KOG2940 Predicted methyltransf 92.8 0.11 2.3E-06 43.1 3.0 41 122-162 72-114 (325)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 92.7 0.8 1.7E-05 38.9 8.5 66 97-169 67-136 (283)
251 TIGR03439 methyl_EasF probable 92.3 0.31 6.6E-06 42.3 5.5 43 122-164 76-125 (319)
252 COG1867 TRM1 N2,N2-dimethylgua 92.0 0.3 6.6E-06 42.9 5.0 44 123-166 53-99 (380)
253 COG1063 Tdh Threonine dehydrog 91.6 0.39 8.5E-06 41.9 5.5 41 121-161 167-211 (350)
254 KOG1709 Guanidinoacetate methy 91.6 0.55 1.2E-05 38.5 5.8 73 121-200 100-174 (271)
255 COG4262 Predicted spermidine s 91.5 0.72 1.6E-05 40.8 6.7 44 122-165 289-335 (508)
256 KOG3115 Methyltransferase-like 91.4 0.26 5.6E-06 40.0 3.8 44 123-166 61-107 (249)
257 PF03686 UPF0146: Uncharacteri 91.4 0.57 1.2E-05 35.0 5.3 43 105-154 3-47 (127)
258 PRK09424 pntA NAD(P) transhydr 90.9 0.47 1E-05 43.7 5.4 41 121-161 163-206 (509)
259 PF01739 CheR: CheR methyltran 90.4 0.54 1.2E-05 37.8 4.8 80 123-205 32-146 (196)
260 PF04445 SAM_MT: Putative SAM- 90.4 1.1 2.3E-05 37.2 6.6 38 125-162 78-116 (234)
261 PF03059 NAS: Nicotianamine sy 90.0 1.3 2.7E-05 37.7 6.9 75 124-205 122-202 (276)
262 PF02636 Methyltransf_28: Puta 89.7 0.65 1.4E-05 38.5 4.9 59 106-164 2-71 (252)
263 COG3392 Adenine-specific DNA m 89.7 0.98 2.1E-05 38.1 5.8 66 102-167 6-72 (330)
264 KOG2651 rRNA adenine N-6-methy 89.5 1.3 2.8E-05 39.3 6.6 31 122-152 153-184 (476)
265 PF02737 3HCDH_N: 3-hydroxyacy 89.1 1.2 2.5E-05 35.2 5.7 41 125-165 1-44 (180)
266 TIGR00006 S-adenosyl-methyltra 89.1 1.9 4E-05 37.2 7.3 45 121-165 19-66 (305)
267 TIGR00675 dcm DNA-methyltransf 88.6 0.84 1.8E-05 39.3 5.0 39 126-164 1-41 (315)
268 PF01269 Fibrillarin: Fibrilla 88.4 7.6 0.00017 32.0 10.0 62 95-157 46-112 (229)
269 KOG3987 Uncharacterized conser 88.0 0.11 2.4E-06 42.3 -0.8 40 122-161 112-152 (288)
270 KOG4058 Uncharacterized conser 87.4 1 2.3E-05 34.8 4.2 48 122-169 72-121 (199)
271 PF02086 MethyltransfD12: D12 87.3 1.2 2.5E-05 36.7 4.9 51 106-160 8-59 (260)
272 COG0293 FtsJ 23S rRNA methylas 86.9 1.1 2.3E-05 36.4 4.3 47 102-152 29-78 (205)
273 COG0270 Dcm Site-specific DNA 86.8 1.6 3.5E-05 37.8 5.7 43 123-165 3-47 (328)
274 PF11968 DUF3321: Putative met 86.4 1.2 2.7E-05 36.3 4.4 83 101-205 30-114 (219)
275 PF01234 NNMT_PNMT_TEMT: NNMT/ 85.7 0.65 1.4E-05 39.0 2.5 45 120-164 54-100 (256)
276 PF05206 TRM13: Methyltransfer 85.0 1.9 4E-05 36.3 5.0 32 121-152 17-55 (259)
277 COG1064 AdhP Zn-dependent alco 83.5 2.7 5.9E-05 36.7 5.5 43 120-162 164-209 (339)
278 PRK10458 DNA cytosine methylas 83.5 2.7 5.9E-05 38.4 5.7 41 123-163 88-130 (467)
279 COG1568 Predicted methyltransf 83.1 4.8 0.0001 34.4 6.5 74 120-200 150-226 (354)
280 PF07942 N2227: N2227-like pro 82.4 4.2 9.1E-05 34.4 6.1 43 122-166 56-99 (270)
281 COG1565 Uncharacterized conser 82.3 8.4 0.00018 34.0 8.0 60 104-164 60-130 (370)
282 PRK09880 L-idonate 5-dehydroge 81.0 3.5 7.6E-05 35.4 5.3 41 121-161 168-212 (343)
283 PF03721 UDPG_MGDP_dh_N: UDP-g 80.9 3.3 7.1E-05 32.9 4.7 36 125-160 2-40 (185)
284 PF03492 Methyltransf_7: SAM d 80.6 3.1 6.8E-05 36.2 4.9 80 123-207 17-119 (334)
285 COG1255 Uncharacterized protei 80.3 4.1 9E-05 30.1 4.6 30 123-152 14-44 (129)
286 cd00401 AdoHcyase S-adenosyl-L 80.2 3.7 8E-05 36.9 5.3 41 120-160 199-242 (413)
287 cd08237 ribitol-5-phosphate_DH 80.1 3.4 7.3E-05 35.6 4.9 41 121-161 162-207 (341)
288 PRK08703 short chain dehydroge 80.0 11 0.00024 30.3 7.7 43 121-164 4-51 (239)
289 KOG1122 tRNA and rRNA cytosine 79.9 7.8 0.00017 34.9 7.0 74 121-200 240-317 (460)
290 PLN02232 ubiquinone biosynthes 79.3 2.4 5.2E-05 32.6 3.4 55 148-207 1-56 (160)
291 PRK05708 2-dehydropantoate 2-r 78.8 7.4 0.00016 33.2 6.6 38 124-161 3-43 (305)
292 KOG1201 Hydroxysteroid 17-beta 78.5 9.1 0.0002 32.9 6.8 49 119-167 34-86 (300)
293 TIGR03201 dearomat_had 6-hydro 77.8 4.9 0.00011 34.6 5.2 42 120-161 164-208 (349)
294 PF05050 Methyltransf_21: Meth 77.7 7 0.00015 29.3 5.6 41 128-168 1-50 (167)
295 COG1062 AdhC Zn-dependent alco 77.6 5.4 0.00012 35.0 5.2 41 121-161 184-228 (366)
296 TIGR03366 HpnZ_proposed putati 77.0 4.8 0.0001 33.5 4.8 41 121-161 119-163 (280)
297 COG1004 Ugd Predicted UDP-gluc 77.0 4.3 9.4E-05 36.2 4.6 37 125-161 2-41 (414)
298 cd08283 FDH_like_1 Glutathione 76.7 5.8 0.00013 34.8 5.5 43 120-162 182-228 (386)
299 PF05148 Methyltransf_8: Hypot 76.6 5.1 0.00011 32.7 4.6 30 122-152 72-101 (219)
300 PLN02740 Alcohol dehydrogenase 76.5 5.4 0.00012 34.9 5.2 42 120-161 196-241 (381)
301 KOG4589 Cell division protein 76.5 4.7 0.0001 32.5 4.2 33 120-152 67-102 (232)
302 TIGR02818 adh_III_F_hyde S-(hy 76.2 6.2 0.00014 34.3 5.5 42 120-161 183-228 (368)
303 PLN02668 indole-3-acetate carb 75.9 1.9 4.2E-05 38.3 2.2 31 123-153 64-111 (386)
304 KOG2912 Predicted DNA methylas 74.7 4.7 0.0001 35.1 4.1 44 126-169 106-152 (419)
305 TIGR02822 adh_fam_2 zinc-bindi 74.6 7 0.00015 33.5 5.3 42 120-161 163-207 (329)
306 KOG1253 tRNA methyltransferase 74.0 1.1 2.4E-05 40.9 0.1 48 122-169 109-160 (525)
307 cd00755 YgdL_like Family of ac 73.6 11 0.00024 31.0 6.0 32 121-152 9-43 (231)
308 PF00107 ADH_zinc_N: Zinc-bind 73.4 4.4 9.6E-05 29.3 3.3 30 132-161 1-32 (130)
309 TIGR00561 pntA NAD(P) transhyd 72.8 8 0.00017 35.8 5.4 41 121-161 162-205 (511)
310 PF13578 Methyltransf_24: Meth 72.2 3.3 7.2E-05 29.1 2.3 40 127-167 1-46 (106)
311 PRK12548 shikimate 5-dehydroge 71.7 18 0.00039 30.6 7.1 31 121-152 124-158 (289)
312 PF11899 DUF3419: Protein of u 70.6 17 0.00037 32.3 6.8 54 98-160 19-74 (380)
313 PRK07819 3-hydroxybutyryl-CoA 70.4 13 0.00028 31.5 5.9 42 124-165 6-50 (286)
314 KOG0022 Alcohol dehydrogenase, 70.3 9.8 0.00021 33.1 5.0 41 121-161 191-235 (375)
315 cd08281 liver_ADH_like1 Zinc-d 70.2 9.8 0.00021 33.1 5.3 42 120-161 189-234 (371)
316 COG0286 HsdM Type I restrictio 69.9 15 0.00033 33.7 6.6 48 122-169 186-240 (489)
317 PRK08862 short chain dehydroge 69.9 31 0.00066 27.8 7.8 45 121-165 3-51 (227)
318 cd08239 THR_DH_like L-threonin 69.4 9.9 0.00021 32.3 5.1 41 120-160 161-205 (339)
319 TIGR03451 mycoS_dep_FDH mycoth 69.0 10 0.00023 32.7 5.2 42 120-161 174-219 (358)
320 COG1748 LYS9 Saccharopine dehy 68.6 11 0.00024 33.6 5.3 53 124-185 2-58 (389)
321 COG0863 DNA modification methy 68.4 16 0.00036 30.4 6.1 48 120-167 220-268 (302)
322 TIGR01202 bchC 2-desacetyl-2-h 68.3 8 0.00017 32.7 4.2 40 122-161 144-187 (308)
323 TIGR01963 PHB_DH 3-hydroxybuty 68.0 25 0.00053 28.2 7.0 55 124-185 2-61 (255)
324 PRK06035 3-hydroxyacyl-CoA deh 67.6 15 0.00033 30.9 5.8 40 124-163 4-46 (291)
325 PRK07523 gluconate 5-dehydroge 67.6 37 0.00081 27.4 8.0 43 121-164 8-55 (255)
326 PRK08293 3-hydroxybutyryl-CoA 67.5 16 0.00035 30.7 5.9 40 124-163 4-46 (287)
327 PRK08213 gluconate 5-dehydroge 66.4 42 0.00091 27.1 8.1 43 121-164 10-57 (259)
328 PLN03209 translocon at the inn 66.2 32 0.00069 32.4 7.9 82 120-202 77-166 (576)
329 cd08230 glucose_DH Glucose deh 66.1 14 0.0003 31.9 5.3 32 121-152 171-204 (355)
330 cd08300 alcohol_DH_class_III c 65.8 16 0.00034 31.7 5.6 41 120-160 184-228 (368)
331 COG1889 NOP1 Fibrillarin-like 65.6 74 0.0016 26.1 8.8 58 97-156 51-113 (231)
332 PRK05867 short chain dehydroge 65.0 46 0.00099 26.9 8.0 43 121-164 7-54 (253)
333 cd08301 alcohol_DH_plants Plan 64.8 15 0.00033 31.7 5.4 40 120-159 185-228 (369)
334 PLN02827 Alcohol dehydrogenase 64.8 15 0.00033 32.1 5.4 41 120-160 191-235 (378)
335 PRK06949 short chain dehydroge 64.6 54 0.0012 26.3 8.4 42 121-163 7-53 (258)
336 PF01488 Shikimate_DH: Shikima 64.1 12 0.00025 27.9 4.0 44 120-163 9-56 (135)
337 PRK07066 3-hydroxybutyryl-CoA 64.0 21 0.00046 30.9 6.0 40 124-163 8-50 (321)
338 cd08277 liver_alcohol_DH_like 63.3 17 0.00038 31.4 5.5 41 120-160 182-226 (365)
339 PRK07063 short chain dehydroge 63.1 58 0.0013 26.3 8.3 60 121-185 5-69 (260)
340 TIGR02437 FadB fatty oxidation 62.7 19 0.00041 34.8 5.9 42 124-165 314-358 (714)
341 cd01080 NAD_bind_m-THF_DH_Cycl 62.6 23 0.0005 27.6 5.5 33 120-152 41-76 (168)
342 PRK08339 short chain dehydroge 62.6 66 0.0014 26.3 8.6 43 121-164 6-53 (263)
343 PRK07530 3-hydroxybutyryl-CoA 61.5 28 0.00061 29.3 6.3 42 123-164 4-48 (292)
344 cd00757 ThiF_MoeB_HesA_family 61.5 19 0.00042 29.2 5.1 32 121-152 19-53 (228)
345 PRK11154 fadJ multifunctional 61.4 23 0.00051 34.1 6.3 42 124-165 310-355 (708)
346 PRK12826 3-ketoacyl-(acyl-carr 61.0 61 0.0013 25.8 8.0 58 121-185 4-66 (251)
347 PF05575 V_cholerae_RfbT: Vibr 60.9 8.7 0.00019 30.4 2.8 48 122-169 79-129 (286)
348 PRK11730 fadB multifunctional 60.8 21 0.00046 34.4 5.9 42 124-165 314-358 (715)
349 PLN03154 putative allyl alcoho 60.7 20 0.00044 30.9 5.4 41 120-160 156-200 (348)
350 cd08254 hydroxyacyl_CoA_DH 6-h 60.5 22 0.00047 29.9 5.5 42 120-161 163-207 (338)
351 cd01078 NAD_bind_H4MPT_DH NADP 60.4 68 0.0015 25.0 8.0 42 120-161 25-70 (194)
352 PRK05876 short chain dehydroge 60.4 61 0.0013 26.8 8.1 42 121-163 4-50 (275)
353 PRK07035 short chain dehydroge 60.3 66 0.0014 25.8 8.2 43 121-164 6-53 (252)
354 PLN02780 ketoreductase/ oxidor 59.7 54 0.0012 28.0 7.8 44 122-165 52-99 (320)
355 KOG1269 SAM-dependent methyltr 59.5 16 0.00035 32.3 4.5 79 121-206 109-189 (364)
356 cd05188 MDR Medium chain reduc 59.5 23 0.0005 28.4 5.3 40 121-160 133-175 (271)
357 PRK10309 galactitol-1-phosphat 59.3 18 0.0004 30.8 4.9 40 121-160 159-202 (347)
358 KOG2352 Predicted spermine/spe 59.1 24 0.00051 32.4 5.5 68 125-202 51-121 (482)
359 PRK07814 short chain dehydroge 58.9 70 0.0015 26.0 8.1 42 121-163 8-54 (263)
360 TIGR02441 fa_ox_alpha_mit fatt 58.6 22 0.00048 34.4 5.6 42 124-165 336-380 (737)
361 PRK02318 mannitol-1-phosphate 58.4 17 0.00037 32.1 4.6 39 124-162 1-43 (381)
362 COG1250 FadB 3-hydroxyacyl-CoA 58.3 27 0.00059 30.1 5.6 44 123-166 3-49 (307)
363 PRK07062 short chain dehydroge 58.3 86 0.0019 25.4 8.6 43 121-164 6-53 (265)
364 TIGR02440 FadJ fatty oxidation 57.8 27 0.00059 33.6 6.1 41 124-164 305-349 (699)
365 PRK05808 3-hydroxybutyryl-CoA 57.6 28 0.00061 29.1 5.6 37 125-161 5-44 (282)
366 PRK07576 short chain dehydroge 57.6 77 0.0017 25.8 8.2 42 121-163 7-53 (264)
367 PRK06129 3-hydroxyacyl-CoA deh 57.6 29 0.00062 29.6 5.7 39 125-163 4-45 (308)
368 PRK09260 3-hydroxybutyryl-CoA 57.5 28 0.00061 29.2 5.6 39 125-163 3-44 (288)
369 PRK08644 thiamine biosynthesis 57.4 41 0.00089 27.2 6.3 33 120-152 25-60 (212)
370 PRK15116 sulfur acceptor prote 57.3 12 0.00026 31.6 3.2 33 120-152 27-62 (268)
371 PRK08945 putative oxoacyl-(acy 57.1 41 0.00088 27.0 6.4 44 120-164 9-57 (247)
372 cd08238 sorbose_phosphate_red 56.9 24 0.00052 31.2 5.3 42 121-162 174-222 (410)
373 PRK01438 murD UDP-N-acetylmura 56.8 66 0.0014 29.1 8.2 48 121-168 14-65 (480)
374 PF06962 rRNA_methylase: Putat 56.7 22 0.00047 27.1 4.2 24 146-169 1-25 (140)
375 PRK06139 short chain dehydroge 56.7 77 0.0017 27.3 8.3 58 121-185 5-67 (330)
376 PRK05854 short chain dehydroge 56.7 95 0.0021 26.2 8.8 61 120-185 11-76 (313)
377 PRK07666 fabG 3-ketoacyl-(acyl 56.4 83 0.0018 25.0 8.0 42 121-163 5-51 (239)
378 PLN02178 cinnamyl-alcohol dehy 56.3 23 0.00051 31.0 5.1 31 122-152 178-210 (375)
379 PRK06125 short chain dehydroge 56.3 98 0.0021 25.0 8.6 43 121-164 5-52 (259)
380 cd01075 NAD_bind_Leu_Phe_Val_D 55.7 73 0.0016 25.4 7.5 42 119-162 24-70 (200)
381 PF01262 AlaDh_PNT_C: Alanine 55.5 25 0.00054 27.1 4.6 42 121-162 18-62 (168)
382 PRK06124 gluconate 5-dehydroge 55.2 90 0.002 25.1 8.1 59 120-185 8-71 (256)
383 PRK08251 short chain dehydroge 55.1 93 0.002 24.8 8.2 58 123-185 2-64 (248)
384 cd05191 NAD_bind_amino_acid_DH 54.7 58 0.0012 21.9 5.9 48 105-152 5-55 (86)
385 cd01487 E1_ThiF_like E1_ThiF_l 54.4 64 0.0014 25.1 6.8 28 125-152 1-31 (174)
386 PRK07890 short chain dehydroge 54.1 1.1E+02 0.0024 24.4 8.5 42 121-163 3-49 (258)
387 PRK06172 short chain dehydroge 53.9 95 0.0021 24.9 8.1 58 121-185 5-67 (253)
388 PRK09291 short chain dehydroge 53.8 65 0.0014 25.8 7.1 73 123-202 2-80 (257)
389 PRK07326 short chain dehydroge 53.5 47 0.001 26.3 6.1 41 122-163 5-50 (237)
390 TIGR00518 alaDH alanine dehydr 53.3 31 0.00067 30.4 5.3 40 121-160 165-207 (370)
391 cd01492 Aos1_SUMO Ubiquitin ac 53.0 50 0.0011 26.3 6.1 32 121-152 19-53 (197)
392 PRK07102 short chain dehydroge 52.8 96 0.0021 24.7 7.9 56 124-185 2-62 (243)
393 PF04072 LCM: Leucine carboxyl 52.5 81 0.0018 24.6 7.2 45 122-166 77-124 (183)
394 PF04989 CmcI: Cephalosporin h 52.5 59 0.0013 26.4 6.3 52 96-152 11-68 (206)
395 TIGR00936 ahcY adenosylhomocys 52.3 31 0.00067 31.0 5.2 35 120-154 192-229 (406)
396 TIGR02279 PaaC-3OHAcCoADH 3-hy 52.3 42 0.00091 31.0 6.2 43 122-164 4-49 (503)
397 PRK07774 short chain dehydroge 52.2 1.1E+02 0.0023 24.4 8.1 42 121-163 4-50 (250)
398 COG5459 Predicted rRNA methyla 51.9 7.6 0.00016 34.4 1.2 48 120-167 111-161 (484)
399 PRK09242 tropinone reductase; 51.2 1.2E+02 0.0025 24.4 8.2 44 121-165 7-55 (257)
400 PRK05866 short chain dehydroge 51.0 1.1E+02 0.0025 25.5 8.3 43 121-164 38-85 (293)
401 PLN02586 probable cinnamyl alc 51.0 28 0.00061 30.2 4.7 32 121-152 182-215 (360)
402 COG1743 Adenine-specific DNA m 51.0 20 0.00042 34.9 3.8 44 121-164 89-133 (875)
403 PRK08085 gluconate 5-dehydroge 50.7 1.1E+02 0.0024 24.5 8.0 43 121-164 7-54 (254)
404 PRK07454 short chain dehydroge 50.7 1.1E+02 0.0025 24.2 8.0 41 122-163 5-50 (241)
405 PRK05786 fabG 3-ketoacyl-(acyl 50.5 1.1E+02 0.0025 24.0 7.9 40 121-161 3-47 (238)
406 PRK07688 thiamine/molybdopteri 50.0 51 0.0011 28.8 6.1 32 121-152 22-56 (339)
407 KOG1098 Putative SAM-dependent 50.0 19 0.00042 34.1 3.5 33 120-152 42-77 (780)
408 KOG2304 3-hydroxyacyl-CoA dehy 49.8 52 0.0011 27.5 5.6 45 122-166 10-57 (298)
409 PF02254 TrkA_N: TrkA-N domain 49.8 34 0.00073 24.1 4.2 31 131-161 4-39 (116)
410 PRK07533 enoyl-(acyl carrier p 49.8 62 0.0014 26.3 6.4 36 120-155 7-48 (258)
411 PRK06130 3-hydroxybutyryl-CoA 49.4 50 0.0011 28.0 5.9 40 124-163 5-47 (311)
412 PRK07478 short chain dehydroge 49.4 1.4E+02 0.0029 24.0 8.3 44 121-165 4-52 (254)
413 cd08285 NADP_ADH NADP(H)-depen 49.3 41 0.00089 28.7 5.4 41 120-160 164-208 (351)
414 TIGR02825 B4_12hDH leukotriene 49.2 43 0.00094 28.2 5.5 41 120-160 136-180 (325)
415 PLN02662 cinnamyl-alcohol dehy 49.1 57 0.0012 27.3 6.2 30 122-152 3-36 (322)
416 cd08296 CAD_like Cinnamyl alco 48.5 46 0.001 28.2 5.6 41 120-160 161-204 (333)
417 PRK12429 3-hydroxybutyrate deh 47.6 1.4E+02 0.003 23.8 8.1 42 122-164 3-49 (258)
418 cd08255 2-desacetyl-2-hydroxye 47.6 42 0.0009 27.4 5.0 42 120-161 95-140 (277)
419 KOG0725 Reductases with broad 47.1 1.5E+02 0.0032 24.9 8.3 48 120-167 5-56 (270)
420 PF01795 Methyltransf_5: MraW 46.6 27 0.00059 30.2 3.8 44 121-164 19-65 (310)
421 PRK06181 short chain dehydroge 46.5 1.3E+02 0.0029 24.2 7.9 39 124-163 2-45 (263)
422 KOG3178 Hydroxyindole-O-methyl 46.4 59 0.0013 28.5 5.8 39 124-162 179-219 (342)
423 PRK07097 gluconate 5-dehydroge 46.3 1.6E+02 0.0034 23.9 8.3 58 121-185 8-70 (265)
424 PRK05476 S-adenosyl-L-homocyst 46.3 39 0.00084 30.6 4.9 35 120-154 209-246 (425)
425 PF01210 NAD_Gly3P_dh_N: NAD-d 46.2 45 0.00097 25.3 4.7 38 125-162 1-41 (157)
426 PLN02545 3-hydroxybutyryl-CoA 46.0 63 0.0014 27.1 6.0 40 124-163 5-47 (295)
427 PLN02989 cinnamyl-alcohol dehy 45.9 73 0.0016 26.8 6.4 30 122-152 4-37 (325)
428 PRK06720 hypothetical protein; 45.8 1.4E+02 0.003 23.0 8.3 43 121-163 14-60 (169)
429 PRK06057 short chain dehydroge 45.6 67 0.0015 25.9 5.9 35 121-156 5-44 (255)
430 PRK03369 murD UDP-N-acetylmura 45.4 46 0.00099 30.4 5.3 37 120-156 9-48 (488)
431 TIGR02819 fdhA_non_GSH formald 45.3 46 0.00099 29.4 5.2 42 120-161 183-228 (393)
432 cd08294 leukotriene_B4_DH_like 44.7 53 0.0012 27.4 5.3 42 120-161 141-186 (329)
433 PRK08268 3-hydroxy-acyl-CoA de 44.5 60 0.0013 30.0 6.0 42 123-164 7-51 (507)
434 PRK07109 short chain dehydroge 44.5 1.6E+02 0.0035 25.2 8.4 58 121-185 6-68 (334)
435 cd08295 double_bond_reductase_ 44.1 54 0.0012 27.8 5.3 42 120-161 149-194 (338)
436 PLN02514 cinnamyl-alcohol dehy 44.0 53 0.0011 28.4 5.3 36 121-156 179-217 (357)
437 PRK07791 short chain dehydroge 43.9 1.4E+02 0.003 24.8 7.7 32 121-152 4-38 (286)
438 PRK06522 2-dehydropantoate 2-r 43.8 48 0.0011 27.6 4.9 37 125-161 2-41 (304)
439 cd08299 alcohol_DH_class_I_II_ 43.6 57 0.0012 28.3 5.5 40 120-159 188-231 (373)
440 PRK14106 murD UDP-N-acetylmura 43.6 1.1E+02 0.0024 27.2 7.5 30 121-152 3-36 (450)
441 PRK08277 D-mannonate oxidoredu 43.5 1.7E+02 0.0036 23.9 8.1 42 121-163 8-54 (278)
442 PRK12771 putative glutamate sy 43.5 50 0.0011 30.7 5.4 32 121-152 135-168 (564)
443 PRK12939 short chain dehydroge 43.0 1.7E+02 0.0036 23.2 8.1 42 121-163 5-51 (250)
444 PF04672 Methyltransf_19: S-ad 42.8 27 0.0006 29.5 3.2 44 124-167 70-119 (267)
445 PRK05650 short chain dehydroge 42.6 1.7E+02 0.0037 23.8 8.0 54 125-185 2-60 (270)
446 PRK15001 SAM-dependent 23S rib 41.9 2.1E+02 0.0046 25.4 8.7 66 97-169 25-90 (378)
447 cd08232 idonate-5-DH L-idonate 41.8 58 0.0013 27.5 5.2 39 122-160 165-207 (339)
448 PRK07677 short chain dehydroge 41.8 1.8E+02 0.0039 23.3 8.3 40 123-163 1-45 (252)
449 PRK08589 short chain dehydroge 41.7 1.9E+02 0.0041 23.6 8.1 32 121-153 4-39 (272)
450 PRK09422 ethanol-active dehydr 41.6 66 0.0014 27.1 5.5 41 120-160 160-204 (338)
451 cd08245 CAD Cinnamyl alcohol d 41.3 67 0.0014 26.9 5.4 40 120-159 160-202 (330)
452 PRK06914 short chain dehydroge 41.3 1.9E+02 0.0042 23.5 8.1 59 122-185 2-65 (280)
453 KOG1209 1-Acyl dihydroxyaceton 40.9 54 0.0012 27.2 4.4 31 122-152 6-40 (289)
454 COG0677 WecC UDP-N-acetyl-D-ma 40.8 21 0.00046 32.0 2.3 36 124-159 10-48 (436)
455 PRK07792 fabG 3-ketoacyl-(acyl 40.5 1.8E+02 0.0038 24.5 7.9 33 120-152 9-44 (306)
456 PRK08306 dipicolinate synthase 39.9 74 0.0016 27.1 5.5 40 120-159 149-191 (296)
457 cd08242 MDR_like Medium chain 39.5 74 0.0016 26.6 5.4 42 120-161 153-197 (319)
458 cd05278 FDH_like Formaldehyde 39.5 72 0.0016 26.9 5.4 41 121-161 166-210 (347)
459 PRK07904 short chain dehydroge 39.4 1.7E+02 0.0038 23.6 7.5 74 122-201 7-93 (253)
460 cd08231 MDR_TM0436_like Hypoth 39.4 68 0.0015 27.4 5.3 38 122-159 177-218 (361)
461 PRK06113 7-alpha-hydroxysteroi 39.4 2E+02 0.0043 23.0 8.0 41 121-162 9-54 (255)
462 PRK12823 benD 1,6-dihydroxycyc 39.3 2E+02 0.0043 23.0 8.1 31 121-152 6-40 (260)
463 PRK05872 short chain dehydroge 39.3 1.2E+02 0.0027 25.2 6.7 41 120-161 6-51 (296)
464 cd08289 MDR_yhfp_like Yhfp put 39.1 1.6E+02 0.0034 24.5 7.4 38 122-159 146-187 (326)
465 cd08293 PTGR2 Prostaglandin re 39.1 70 0.0015 27.1 5.2 38 124-161 156-198 (345)
466 KOG2798 Putative trehalase [Ca 39.0 51 0.0011 28.8 4.2 33 123-155 151-184 (369)
467 PRK03525 crotonobetainyl-CoA:c 38.8 38 0.00082 30.3 3.6 33 120-152 11-45 (405)
468 PF03853 YjeF_N: YjeF-related 38.8 72 0.0016 24.6 4.8 60 102-165 8-76 (169)
469 PRK10083 putative oxidoreducta 38.5 72 0.0016 26.9 5.2 42 120-161 158-204 (339)
470 cd08246 crotonyl_coA_red croto 38.4 81 0.0017 27.5 5.6 42 120-161 191-236 (393)
471 KOG3045 Predicted RNA methylas 38.3 37 0.0008 28.9 3.2 17 122-138 180-196 (325)
472 PF11312 DUF3115: Protein of u 38.3 1.4E+02 0.0031 25.9 6.8 44 123-166 87-155 (315)
473 COG1179 Dinucleotide-utilizing 38.1 30 0.00065 29.0 2.6 34 120-153 27-63 (263)
474 TIGR00027 mthyl_TIGR00027 meth 37.8 1.3E+02 0.0029 25.0 6.6 58 124-183 83-141 (260)
475 PRK07067 sorbitol dehydrogenas 37.7 1.1E+02 0.0023 24.6 6.0 37 121-158 4-45 (257)
476 PRK12384 sorbitol-6-phosphate 37.7 2.1E+02 0.0046 22.9 8.2 37 123-160 2-43 (259)
477 PRK15057 UDP-glucose 6-dehydro 37.7 63 0.0014 28.7 4.8 36 126-161 3-40 (388)
478 cd08265 Zn_ADH3 Alcohol dehydr 37.7 79 0.0017 27.5 5.5 41 120-160 201-245 (384)
479 cd08278 benzyl_alcohol_DH Benz 37.3 80 0.0017 27.2 5.4 40 121-160 185-228 (365)
480 PF07101 DUF1363: Protein of u 36.9 13 0.00029 26.4 0.3 11 126-136 6-16 (124)
481 PRK06249 2-dehydropantoate 2-r 36.9 52 0.0011 28.0 4.1 30 123-152 5-36 (313)
482 PRK06200 2,3-dihydroxy-2,3-dih 36.8 1.2E+02 0.0025 24.6 6.1 38 121-159 4-46 (263)
483 PRK06114 short chain dehydroge 36.6 2.2E+02 0.0048 22.8 7.9 43 121-164 6-54 (254)
484 PLN02353 probable UDP-glucose 36.5 67 0.0014 29.5 4.9 38 124-161 2-44 (473)
485 PRK06194 hypothetical protein; 36.5 2.2E+02 0.0047 23.3 7.8 40 121-161 4-48 (287)
486 PRK06196 oxidoreductase; Provi 36.5 1.2E+02 0.0026 25.5 6.3 36 121-157 24-64 (315)
487 PRK01710 murD UDP-N-acetylmura 36.3 96 0.0021 28.0 5.9 32 121-152 12-45 (458)
488 PRK06935 2-deoxy-D-gluconate 3 36.1 2.2E+02 0.0048 22.8 7.6 32 121-153 13-48 (258)
489 cd08240 6_hydroxyhexanoate_dh_ 35.9 86 0.0019 26.6 5.3 38 122-159 175-216 (350)
490 KOG2497 Predicted methyltransf 35.9 8.2 0.00018 32.5 -1.0 48 122-169 185-233 (262)
491 PLN02253 xanthoxin dehydrogena 35.8 1.2E+02 0.0027 24.7 6.1 37 121-158 16-57 (280)
492 COG2933 Predicted SAM-dependen 35.6 45 0.00097 28.5 3.3 35 119-153 208-242 (358)
493 PRK12935 acetoacetyl-CoA reduc 34.8 2.3E+02 0.005 22.4 7.9 31 121-152 4-38 (247)
494 PLN02494 adenosylhomocysteinas 34.8 79 0.0017 29.1 5.0 35 120-154 251-288 (477)
495 TIGR03325 BphB_TodD cis-2,3-di 34.1 1.3E+02 0.0028 24.3 6.0 38 121-159 3-45 (262)
496 PRK05565 fabG 3-ketoacyl-(acyl 34.1 2.3E+02 0.005 22.2 7.8 58 121-185 3-66 (247)
497 COG0118 HisH Glutamine amidotr 34.1 50 0.0011 26.7 3.3 29 125-153 5-34 (204)
498 KOG2539 Mitochondrial/chloropl 34.0 42 0.00091 30.7 3.1 83 121-207 199-286 (491)
499 PF00899 ThiF: ThiF family; I 34.0 51 0.0011 24.2 3.2 30 123-152 2-34 (135)
500 PRK05993 short chain dehydroge 33.9 1.2E+02 0.0026 24.9 5.8 35 123-158 4-43 (277)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.91 E-value=1.2e-24 Score=172.05 Aligned_cols=125 Identities=38% Similarity=0.536 Sum_probs=72.1
Q ss_pred ceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhc--CccccCCCEEEEECCccCHHHHHHHHc--CCEEEEEehH
Q 028335 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS--GMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDLP 153 (210)
Q Consensus 78 ~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~--~~~~~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~~ 153 (210)
..+.|.|+. ...+|.++|+++++|++||.+.... ....+++++|||||||+|++|+.++++ +.+|++||++
T Consensus 4 ~~l~i~e~~-----~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~ 78 (173)
T PF10294_consen 4 KTLQIEEDW-----GDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYN 78 (173)
T ss_dssp ------------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S
T ss_pred ccccccccc-----ccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccc
Confidence 456666654 2358999999999999999985311 244678999999999999999999998 5689999994
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-ccCCCCcEEEEcceeeecC
Q 028335 154 DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYGNESLLLFLQA 209 (210)
Q Consensus 154 ~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~-~~~~~fD~Iia~DviY~~~ 209 (210)
+++++++.|++.|+.. ...++.+..++|++..... +...+||+||++||+|+++
T Consensus 79 ~~l~~l~~Ni~~N~~~--~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~ 133 (173)
T PF10294_consen 79 EVLELLRRNIELNGSL--LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEE 133 (173)
T ss_dssp -HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GG
T ss_pred hhhHHHHHHHHhcccc--ccccccCcEEEecCcccccccccccCCEEEEecccchHH
Confidence 4999999999999731 2357899999999854222 2335899999999999975
No 2
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.62 E-value=3.3e-15 Score=123.30 Aligned_cols=117 Identities=33% Similarity=0.468 Sum_probs=92.1
Q ss_pred cccEEEeccHHHHHHHHhhhhhc-----Ccccc--CCCEEEEECCccCHHHHHHHH-cCCEEEEEehHHHHHHHHHHHHH
Q 028335 94 VTGSVMWDSGVVLGKFLEHAVDS-----GMLLL--HGKKIVELGSGCGLVGCIAAL-LGAQVILTDLPDRLRLLKKNIEN 165 (210)
Q Consensus 94 ~tG~~~W~aa~~la~~L~~~~~~-----~~~~~--~~~~VLELGcGtGl~~l~la~-~g~~Vv~tD~~~~l~~~~~N~~~ 165 (210)
.....+|+++-.+++++..+... +...+ +..+|||||+|||++|+.+|. .+++|+.+|.+..+..++.|...
T Consensus 51 ~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 51 GISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDK 130 (248)
T ss_pred ceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhh
Confidence 35789999999999998765321 01112 245799999999999999998 58899999999998889888777
Q ss_pred hccCCC-CCCceEEEEeeCCCCCCCCccCCC-CcEEEEcceeeecCC
Q 028335 166 NLRHGD-LRGSAVVTELTWGDDPDQDLIQPL-PDYGNESLLLFLQAT 210 (210)
Q Consensus 166 n~~~~~-~~~~~~~~~l~w~~~~~~~~~~~~-fD~Iia~DviY~~~~ 210 (210)
|+.... .+..+.+..+.|+...+.....++ ||+|+++||+|.+++
T Consensus 131 ~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~ 177 (248)
T KOG2793|consen 131 NNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEES 177 (248)
T ss_pred hhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCc
Confidence 765432 234789999999998776655555 999999999999874
No 3
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.2e-15 Score=126.38 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=93.4
Q ss_pred CCCCccccccceeEEeecCceEEEEeCCCCCCCC----------Cc---ccEEEeccHHHHHHHHhhhhhcCccccCCCE
Q 028335 59 KPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTP----------GV---TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKK 125 (210)
Q Consensus 59 ~~~~~v~~~~~~~~~~~~g~~~~i~q~~~~~~~~----------g~---tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~ 125 (210)
.+.+|.+.+.+.+.|...|++|+|..++.....+ |. ||. -+++....++|.+. ..++++
T Consensus 94 ~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~--HpTT~lcL~~Le~~------~~~g~~ 165 (300)
T COG2264 94 DEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGT--HPTTSLCLEALEKL------LKKGKT 165 (300)
T ss_pred ChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCC--ChhHHHHHHHHHHh------hcCCCE
Confidence 4779999999999999999999999655421111 11 333 35666666777764 348999
Q ss_pred EEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 126 IVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 126 VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
|||+|||+|+++++++++|+. |+++|+ +.+++.+++|++.|+... .+. ...... .....+.+||+|+|.
T Consensus 166 vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~---~~~~~~-~~~~~~~~~DvIVAN 236 (300)
T COG2264 166 VLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL----LVQ---AKGFLL-LEVPENGPFDVIVAN 236 (300)
T ss_pred EEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch----hhh---cccccc-hhhcccCcccEEEeh
Confidence 999999999999999999995 999999 999999999999998761 111 111111 112234699999984
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.56 E-value=2.5e-15 Score=118.61 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=85.2
Q ss_pred CCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 92 PGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 92 ~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+...++..|.+++.+++|+..+. ..+++++|||+|+|+|+.++++++.|+ .|+++|+ +.....++.|+..|+..
T Consensus 53 pPpfwa~~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~ 128 (218)
T COG3897 53 PPPFWAFAWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS 128 (218)
T ss_pred CchHHHHHHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce
Confidence 34478889999999999999763 478999999999999999999999998 5999999 89999999999999865
Q ss_pred CCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcceeeecC
Q 028335 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLLLFLQA 209 (210)
Q Consensus 170 ~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~DviY~~~ 209 (210)
+.+...+- ...++.||+|+++|++|++.
T Consensus 129 ------i~~~~~d~------~g~~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 129 ------ILFTHADL------IGSPPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ------eEEeeccc------cCCCcceeEEEeeceecCch
Confidence 34433332 22467899999999999864
No 5
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.52 E-value=3.4e-14 Score=120.78 Aligned_cols=127 Identities=23% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCCCccccccceeEEeecCceEEEEeCCCCCCC----------CCc-ccEEEeccHHHHHHHHhhhhhcCccccCCCEEE
Q 028335 59 KPNAFVAQSSLNLRIDACGHSLSILQSPSSLGT----------PGV-TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIV 127 (210)
Q Consensus 59 ~~~~~v~~~~~~~~~~~~g~~~~i~q~~~~~~~----------~g~-tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VL 127 (210)
.+.+|...+...|.+...|.++.|..+...... +|. .|.=.-+++....++|.+. ..++++||
T Consensus 93 ~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~------~~~g~~vL 166 (295)
T PF06325_consen 93 EEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKY------VKPGKRVL 166 (295)
T ss_dssp -HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHH------SSTTSEEE
T ss_pred ccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHh------ccCCCEEE
Confidence 467888877777877777888888866533211 110 1111246677777788764 45788999
Q ss_pred EECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 128 ELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 128 ELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
|+|||||+++++++++|+ +|+++|+ +.+++.+++|++.|+.. .++.+. . . ......+||+|+|.
T Consensus 167 DvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~--~---~--~~~~~~~~dlvvAN 232 (295)
T PF06325_consen 167 DVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE----DRIEVS--L---S--EDLVEGKFDLVVAN 232 (295)
T ss_dssp EES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T----TCEEES--C---T--SCTCCS-EEEEEEE
T ss_pred EeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEE--E---e--cccccccCCEEEEC
Confidence 999999999999999998 6999999 99999999999999986 333331 1 1 11234789999974
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.48 E-value=6.9e-13 Score=104.37 Aligned_cols=102 Identities=24% Similarity=0.296 Sum_probs=79.6
Q ss_pred EEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHH
Q 028335 80 LSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRL 156 (210)
Q Consensus 80 ~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l 156 (210)
+++.+.++.|+..+. =.++.+|.+++... ++++|||||||+|.+|+.+++.+. +|+++|+ +.++
T Consensus 2 ~~~~~~~gvFs~~~~-----d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~ 68 (170)
T PF05175_consen 2 LEFITHPGVFSPPRL-----DAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL 68 (170)
T ss_dssp EEEEEETTSTTTTSH-----HHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred EEEEECCCeeCCCCC-----CHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 678888999875543 24677888888753 778999999999999999999866 5999999 9999
Q ss_pred HHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcc
Q 028335 157 RLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESL 203 (210)
Q Consensus 157 ~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~D 203 (210)
+.+++|++.|+.. + +.+...++-+.. .+.+||+|++.-
T Consensus 69 ~~a~~n~~~n~~~----~-v~~~~~d~~~~~----~~~~fD~Iv~NP 106 (170)
T PF05175_consen 69 ELAKRNAERNGLE----N-VEVVQSDLFEAL----PDGKFDLIVSNP 106 (170)
T ss_dssp HHHHHHHHHTTCT----T-EEEEESSTTTTC----CTTCEEEEEE--
T ss_pred HHHHHHHHhcCcc----c-cccccccccccc----cccceeEEEEcc
Confidence 9999999999876 2 666665654332 257899999853
No 7
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.29 E-value=2.8e-11 Score=102.96 Aligned_cols=128 Identities=22% Similarity=0.234 Sum_probs=88.2
Q ss_pred CCCccccccceeEEeecCceEEEEeCCCCCC----------CCCc-ccEEEeccHHHHHHHHhhhhhcCccccCCCEEEE
Q 028335 60 PNAFVAQSSLNLRIDACGHSLSILQSPSSLG----------TPGV-TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVE 128 (210)
Q Consensus 60 ~~~~v~~~~~~~~~~~~g~~~~i~q~~~~~~----------~~g~-tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLE 128 (210)
+.+|.+.+...+.+...|.++.|.++..... .+|. .|.-..+++....++|... ..++++|||
T Consensus 92 ~~dW~~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~------~~~g~~VLD 165 (288)
T TIGR00406 92 SKDWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDL------DLKDKNVID 165 (288)
T ss_pred hhhHHHHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhh------cCCCCEEEE
Confidence 5789988888888877888899985432211 1111 1222345566555666543 246789999
Q ss_pred ECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 129 LGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 129 LGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
+|||+|.+++.++++|+ +|+++|+ +.+++.+++|+..|+.. ..+.+...+ .. ...+.+||+|++.
T Consensus 166 vGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~---~~--~~~~~~fDlVvan 232 (288)
T TIGR00406 166 VGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIY---LE--QPIEGKADVIVAN 232 (288)
T ss_pred eCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEecc---cc--cccCCCceEEEEe
Confidence 99999999999998876 7999999 99999999999998764 223322221 11 1134589999874
No 8
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=7.3e-11 Score=99.63 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=92.4
Q ss_pred chHHHHHHHHHhcCCCCceeeEEEecCCCCCCChhHHHHHHhhcCCCCCCCC--CCcc--------ccccceeEEeecCc
Q 028335 9 TEEETEMMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKP--NAFV--------AQSSLNLRIDACGH 78 (210)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~v--------~~~~~~~~~~~~g~ 78 (210)
.|.|+-+..+.+.-+-.+.+...+. ..+.....+.+++.|.......+.. ..+. ......+.....|.
T Consensus 50 ~e~e~qLa~ll~~~~~g~~i~v~g~--~~~g~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (300)
T COG2813 50 AEAEFQLAQLLARLPPGGEIVVVGE--KRDGVRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPPPFADEPEWKVYLLGH 127 (300)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEec--ccchHHHHHHHHHHhcCccccchHhhcceeEeecCCCCcccchhhhhhhhccC
Confidence 4667777777777666666655532 2233445566777775321111100 0000 00111111222378
Q ss_pred eEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHH
Q 028335 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDR 155 (210)
Q Consensus 79 ~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~ 155 (210)
.++|+..|++||..+.. ..+.+|.+-|.. ..+.+|||||||.|.+|+.+++... +++++|. ..+
T Consensus 128 ~~~~~t~pGVFS~~~lD-----~GS~lLl~~l~~--------~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~A 194 (300)
T COG2813 128 ELTFKTLPGVFSRDKLD-----KGSRLLLETLPP--------DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARA 194 (300)
T ss_pred ceEEEeCCCCCcCCCcC-----hHHHHHHHhCCc--------cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHH
Confidence 89999999999865541 234444444332 2344999999999999999999864 8999999 889
Q ss_pred HHHHHHHHHHhccC
Q 028335 156 LRLLKKNIENNLRH 169 (210)
Q Consensus 156 l~~~~~N~~~n~~~ 169 (210)
++.+|+|+..|+..
T Consensus 195 v~~ar~Nl~~N~~~ 208 (300)
T COG2813 195 VESARKNLAANGVE 208 (300)
T ss_pred HHHHHHhHHHcCCC
Confidence 99999999999876
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.28 E-value=2.6e-11 Score=88.01 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCCEEEEECCccCHHHHHHHH--cCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~--~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
++.+|||||||+|.+++.+++ .+++|+++|+ +.+++.+++|+..+... .++.+..-++ .. .. -...+||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~-~~-~~-~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS----DRITFVQGDA-EF-DP-DFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT----TTEEEEESCC-HG-GT-TTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECcc-cc-Cc-ccCCCCCE
Confidence 578999999999999999999 6889999999 99999999999666554 5788887776 11 11 12357999
Q ss_pred EEEcc
Q 028335 199 GNESL 203 (210)
Q Consensus 199 Iia~D 203 (210)
|++..
T Consensus 74 v~~~~ 78 (112)
T PF12847_consen 74 VICSG 78 (112)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99988
No 10
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.26 E-value=2.5e-11 Score=100.37 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=84.5
Q ss_pred cCceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-C-CEEEEEeh-
Q 028335 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL- 152 (210)
Q Consensus 76 ~g~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g-~~Vv~tD~- 152 (210)
.++.+.|.|.+..++ .=-.+++|+.|..- ...++|||||||+|++++++|++ . ++++++|+
T Consensus 14 ~~~~~~I~q~~~~~~--------~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq 77 (248)
T COG4123 14 TFKQFFIIQDRCGFR--------YGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQ 77 (248)
T ss_pred cccceEEEeCCCccc--------cccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeC
Confidence 457788888875443 33468999999763 25889999999999999999987 4 68999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcceeee
Q 028335 153 PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLLLFL 207 (210)
Q Consensus 153 ~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~DviY~ 207 (210)
+.+.+.|++|++.|... .++.+.+.|..+.... .....||+|+|.---|.
T Consensus 78 ~~~a~~A~~nv~ln~l~----~ri~v~~~Di~~~~~~-~~~~~fD~Ii~NPPyf~ 127 (248)
T COG4123 78 EEAAEMAQRNVALNPLE----ERIQVIEADIKEFLKA-LVFASFDLIICNPPYFK 127 (248)
T ss_pred HHHHHHHHHHHHhCcch----hceeEehhhHHHhhhc-ccccccCEEEeCCCCCC
Confidence 89999999999999876 5777777775443322 12336888888765443
No 11
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.24 E-value=1.4e-10 Score=101.85 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=79.6
Q ss_pred ceeEEeecCceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc--CCE
Q 028335 69 LNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQ 146 (210)
Q Consensus 69 ~~~~~~~~g~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~--g~~ 146 (210)
..+...+.+..++|...+++|+..+.. .++.+|..+|.. ..+.+|||||||+|.+++.+++. +++
T Consensus 188 ~~~~~~~~~~~~~~~~~~gVFs~~~LD-----~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~P~~~ 254 (378)
T PRK15001 188 QTVSWKLEGTDWTIHNHANVFSRTGLD-----IGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKNPQAK 254 (378)
T ss_pred ceeEEEEcCceEEEEecCCccCCCCcC-----hHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhCCCCE
Confidence 345556778899999999999865542 345555555432 13468999999999999999987 458
Q ss_pred EEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcc
Q 028335 147 VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESL 203 (210)
Q Consensus 147 Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~D 203 (210)
|+++|. +.+++.+++|++.|+... ..++.+.. ++.... +...+||+|++.-
T Consensus 255 V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~---~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 255 VVFVDESPMAVASSRLNVETNMPEA--LDRCEFMI---NNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred EEEEECCHHHHHHHHHHHHHcCccc--CceEEEEE---cccccc-CCCCCEEEEEECc
Confidence 999999 899999999999986431 11333332 222221 1234688888753
No 12
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.23 E-value=5.5e-11 Score=99.12 Aligned_cols=104 Identities=24% Similarity=0.312 Sum_probs=72.1
Q ss_pred CCCCccccccceeEEeecCceEEEEeCCCCCCCCC----------cccEEEeccHHHHHHHHhhhhhcCccccCCCEEEE
Q 028335 59 KPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPG----------VTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVE 128 (210)
Q Consensus 59 ~~~~~v~~~~~~~~~~~~g~~~~i~q~~~~~~~~g----------~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLE 128 (210)
.+.+|...+...+.+...|.++.|+.+......++ ..|.-..+.+..+.+++... ..++++|||
T Consensus 52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~------~~~~~~VLD 125 (250)
T PRK00517 52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKL------VLPGKTVLD 125 (250)
T ss_pred CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhh------cCCCCEEEE
Confidence 45577766666666666666666664332211000 11222245666666666543 347889999
Q ss_pred ECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhcc
Q 028335 129 LGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLR 168 (210)
Q Consensus 129 LGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~ 168 (210)
+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|+..|+.
T Consensus 126 iGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 126 VGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred eCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999999999988887 4999999 9999999999999876
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.19 E-value=2.2e-11 Score=99.55 Aligned_cols=77 Identities=21% Similarity=0.118 Sum_probs=60.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
+++++|||+|||-|+++..+|+.|++|+++|. +.+|+.++..+..+++.+ .+....-+ +......+||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i------~y~~~~~e---dl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNI------DYRQATVE---DLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccc------cchhhhHH---HHHhcCCCccEE
Confidence 68999999999999999999999999999999 899999999999988652 12221111 111122699999
Q ss_pred EEcceee
Q 028335 200 NESLLLF 206 (210)
Q Consensus 200 ia~DviY 206 (210)
+|.+||-
T Consensus 129 ~cmEVlE 135 (243)
T COG2227 129 TCMEVLE 135 (243)
T ss_pred EEhhHHH
Confidence 9999974
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.17 E-value=1.8e-10 Score=88.66 Aligned_cols=79 Identities=25% Similarity=0.199 Sum_probs=64.4
Q ss_pred CCCEEEEECCccCHHHHHHH-Hc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 122 HGKKIVELGSGCGLVGCIAA-LL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la-~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
++.+|||||||+|.++..++ +. +.+++++|+ +.+++.++++++.++.. ++.+...++.+ .+..+. ..||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-----ni~~~~~d~~~-l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-----NIEFIQGDIED-LPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-----TEEEEESBTTC-GCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-----ccceEEeehhc-cccccC-CCee
Confidence 67899999999999999999 44 568999999 99999999999988764 58888888766 332222 6899
Q ss_pred EEEEcceeee
Q 028335 198 YGNESLLLFL 207 (210)
Q Consensus 198 ~Iia~DviY~ 207 (210)
+|++..++|+
T Consensus 76 ~I~~~~~l~~ 85 (152)
T PF13847_consen 76 IIISNGVLHH 85 (152)
T ss_dssp EEEEESTGGG
T ss_pred EEEEcCchhh
Confidence 9999988764
No 15
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.3e-10 Score=90.33 Aligned_cols=73 Identities=33% Similarity=0.506 Sum_probs=56.5
Q ss_pred cccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC---CCCCCccC
Q 028335 119 LLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD---DPDQDLIQ 193 (210)
Q Consensus 119 ~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~---~~~~~~~~ 193 (210)
..+.++.|+|||||||.+++.++.+|+ +|+++|+ +++++.+++|+..+. ..+.+...+-.+ .++..+.|
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL------GDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcchhhcCCccceEEEC
Confidence 357899999999999999999999998 5999999 999999999998843 235555444322 23445567
Q ss_pred CCCc
Q 028335 194 PLPD 197 (210)
Q Consensus 194 ~~fD 197 (210)
|||-
T Consensus 116 PPFG 119 (198)
T COG2263 116 PPFG 119 (198)
T ss_pred CCCc
Confidence 7773
No 16
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.14 E-value=5.4e-11 Score=98.17 Aligned_cols=81 Identities=27% Similarity=0.256 Sum_probs=57.0
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
+.|++|||+|||+|+++..||++|++|+++|. +++++.+++....+-... ..+. ..+......-.. ..++||.|
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~---~~~~-y~l~~~~~~~E~-~~~~fDaV 162 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLE---GAIA-YRLEYEDTDVEG-LTGKFDAV 162 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhc---cccc-eeeehhhcchhh-ccccccee
Confidence 45688999999999999999999999999999 999999999955543321 1111 112111111001 23469999
Q ss_pred EEcceee
Q 028335 200 NESLLLF 206 (210)
Q Consensus 200 ia~DviY 206 (210)
+|++|+-
T Consensus 163 vcsevle 169 (282)
T KOG1270|consen 163 VCSEVLE 169 (282)
T ss_pred eeHHHHH
Confidence 9999863
No 17
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.3e-11 Score=94.88 Aligned_cols=108 Identities=26% Similarity=0.284 Sum_probs=78.3
Q ss_pred ccc-EEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCcc-CHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhcc
Q 028335 94 VTG-SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLR 168 (210)
Q Consensus 94 ~tG-~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGt-Gl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~ 168 (210)
.|| -.+||+..+|+.++.+... .+++++|||||.|- |+.|+.+|.... .|..||. ...++..++-...|..
T Consensus 4 ntgnvciwpseeala~~~l~~~n----~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~ 79 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPN----KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA 79 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchh----HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc
Confidence 355 4699999999999987532 57889999999995 999999997743 6999999 8899999988888743
Q ss_pred CCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcceeeec
Q 028335 169 HGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLLLFLQ 208 (210)
Q Consensus 169 ~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~DviY~~ 208 (210)
+ ...++.+....|..... ......||+|+|+||+|.+
T Consensus 80 s--~~tsc~vlrw~~~~aqs-q~eq~tFDiIlaADClFfd 116 (201)
T KOG3201|consen 80 S--SLTSCCVLRWLIWGAQS-QQEQHTFDIILAADCLFFD 116 (201)
T ss_pred c--ccceehhhHHHHhhhHH-HHhhCcccEEEeccchhHH
Confidence 3 11233333333322211 1123489999999999865
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.12 E-value=5.7e-10 Score=89.78 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=61.8
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|..++.+++.|.+|+++|. +.+++.+++++..++.. ++.+...++.+. .+ ..+||+|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~---~~-~~~fD~I 99 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-----NLHTAVVDLNNL---TF-DGEYDFI 99 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----cceEEecChhhC---Cc-CCCcCEE
Confidence 46789999999999999999999999999999 99999999998887653 244444444322 12 3579999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++..++|.
T Consensus 100 ~~~~~~~~ 107 (197)
T PRK11207 100 LSTVVLMF 107 (197)
T ss_pred EEecchhh
Confidence 99998764
No 19
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.09 E-value=1.8e-09 Score=92.95 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=61.0
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|.+++.+++.|.+|+++|+ +.|++.+++|+............+.+...++.. .+..||+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~------l~~~fD~V 216 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES------LSGKYDTV 216 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh------cCCCcCEE
Confidence 36789999999999999999999999999999 999999999987642210001234555555422 14679999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++.|++++
T Consensus 217 v~~~vL~H 224 (315)
T PLN02585 217 TCLDVLIH 224 (315)
T ss_pred EEcCEEEe
Confidence 99999864
No 20
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=7.8e-10 Score=93.72 Aligned_cols=68 Identities=28% Similarity=0.342 Sum_probs=52.8
Q ss_pred EEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEE
Q 028335 125 KIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
+|||||||||.+++.+++... +|+++|+ +++++.+++|+..|++. ++.+...+|..... ++||+||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~-----~~~~~~~dlf~~~~-----~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV-----RVLVVQSDLFEPLR-----GKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc-----cEEEEeeecccccC-----CceeEEEe
Confidence 799999999999999998865 8999999 99999999999999863 23333336654322 25666665
Q ss_pred c
Q 028335 202 S 202 (210)
Q Consensus 202 ~ 202 (210)
.
T Consensus 183 N 183 (280)
T COG2890 183 N 183 (280)
T ss_pred C
Confidence 3
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.07 E-value=1e-09 Score=87.77 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
++.+|||+|||+|.+++.+++. +.+|+++|. +.+++.+++|++.++.. ++.+...+..+.. . ..+||+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-----~i~~~~~d~~~~~---~-~~~fDl 115 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-----NVTVVHGRAEEFG---Q-EEKFDV 115 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-----CEEEEeccHhhCC---C-CCCccE
Confidence 4789999999999999998864 568999999 89999999999998764 3666665543321 1 468999
Q ss_pred EEEcc
Q 028335 199 GNESL 203 (210)
Q Consensus 199 Iia~D 203 (210)
|++..
T Consensus 116 V~~~~ 120 (187)
T PRK00107 116 VTSRA 120 (187)
T ss_pred EEEcc
Confidence 99853
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.04 E-value=1.3e-09 Score=87.52 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=59.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.+++++..+++. +.....+.... . ..++||+|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~------v~~~~~d~~~~---~-~~~~fD~I 98 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP------LRTDAYDINAA---A-LNEDYDFI 98 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC------ceeEeccchhc---c-ccCCCCEE
Confidence 35679999999999999999999999999999 99999999998877653 33333332211 1 13579999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
+++.+++.
T Consensus 99 ~~~~~~~~ 106 (195)
T TIGR00477 99 FSTVVFMF 106 (195)
T ss_pred EEeccccc
Confidence 99988753
No 23
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.03 E-value=1.2e-09 Score=88.95 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=62.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|.++..+++.+.+|+++|+ +.++..+++++..++.. .++.+...++... ..+||+|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~~------~~~fD~i 123 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVA----GNVEFEVNDLLSL------CGEFDIV 123 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECChhhC------CCCcCEE
Confidence 46889999999999999999988889999999 99999999998776542 2455555554332 1579999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
+++++++.
T Consensus 124 i~~~~l~~ 131 (219)
T TIGR02021 124 VCMDVLIH 131 (219)
T ss_pred EEhhHHHh
Confidence 99999753
No 24
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.03 E-value=3e-09 Score=84.07 Aligned_cols=73 Identities=22% Similarity=0.173 Sum_probs=58.0
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++++|||||||+|.+++.+++.+.+|+++|+ +.+++.+++|+..++.. +.+...++.+. ..++||+|
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~d~~~~-----~~~~fD~V 86 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG------LDVVMTDLFKG-----VRGKFDVI 86 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCc------eEEEEcccccc-----cCCcccEE
Confidence 36678999999999999999998889999999 99999999999887643 45555554332 13479999
Q ss_pred EEcce
Q 028335 200 NESLL 204 (210)
Q Consensus 200 ia~Dv 204 (210)
++...
T Consensus 87 i~n~p 91 (179)
T TIGR00537 87 LFNPP 91 (179)
T ss_pred EECCC
Confidence 98754
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.03 E-value=6.8e-10 Score=95.75 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=61.2
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|.++..+++.|++|+++|. +++++.+++++..+... .++.+...+..+ ....+.+||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~----~~i~~~~~dae~---l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVT----STIEYLCTTAEK---LADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcc----cceeEEecCHHH---hhhccCCCCEE
Confidence 46779999999999999999999999999999 99999999887665432 234444433221 12234689999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++.+|+++
T Consensus 203 i~~~vLeH 210 (322)
T PLN02396 203 LSLEVIEH 210 (322)
T ss_pred EEhhHHHh
Confidence 99999874
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=9e-10 Score=91.93 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++...+.. .++.+...+..+... ....+||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~----~~v~~~~~d~~~l~~--~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVS----DNMQFIHCAAQDIAQ--HLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc----cceEEEEcCHHHHhh--hcCCCCCEEE
Confidence 5679999999999999999999999999999 99999999999877653 345555544332211 2346899999
Q ss_pred Ecceeee
Q 028335 201 ESLLLFL 207 (210)
Q Consensus 201 a~DviY~ 207 (210)
+..++++
T Consensus 118 ~~~vl~~ 124 (255)
T PRK11036 118 FHAVLEW 124 (255)
T ss_pred ehhHHHh
Confidence 9998763
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.99 E-value=2.3e-09 Score=91.11 Aligned_cols=76 Identities=24% Similarity=0.255 Sum_probs=59.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++++|||+|||+|..++.+++.|.+|+++|. +.+++.+++|+..+++. +.+...+.... . ...+||+|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~------v~~~~~D~~~~---~-~~~~fD~I 188 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLN------IRTGLYDINSA---S-IQEEYDFI 188 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc------eEEEEechhcc---c-ccCCccEE
Confidence 35669999999999999999999999999999 89999999999887653 44444443221 1 24689999
Q ss_pred EEcceee
Q 028335 200 NESLLLF 206 (210)
Q Consensus 200 ia~DviY 206 (210)
++..+++
T Consensus 189 ~~~~vl~ 195 (287)
T PRK12335 189 LSTVVLM 195 (287)
T ss_pred EEcchhh
Confidence 9998865
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.98 E-value=2.7e-09 Score=84.85 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=57.8
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
+++++|||+|||+|.+++.++..+ .+|+++|. +.+++.+++|++.++.. ++.+...+..+. ....+||
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-----~i~~i~~d~~~~----~~~~~fD 111 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-----NVEIVNGRAEDF----QHEEQFD 111 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-----CeEEEecchhhc----cccCCcc
Confidence 468899999999999999988764 57999999 89999999999888653 366666665442 1246899
Q ss_pred EEEEc
Q 028335 198 YGNES 202 (210)
Q Consensus 198 ~Iia~ 202 (210)
+|++.
T Consensus 112 ~I~s~ 116 (181)
T TIGR00138 112 VITSR 116 (181)
T ss_pred EEEeh
Confidence 98874
No 29
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.97 E-value=1.8e-09 Score=92.46 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=62.1
Q ss_pred CccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEehHHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 117 GMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 117 ~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
+..+++++.|||+|||||++++++|+.|+ +|+++|...+.+.+++.+..|++. +.+.+..-.- .+..++-+.
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~----~ii~vi~gkv---Edi~LP~eK 127 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLE----DVITVIKGKV---EDIELPVEK 127 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCcc----ceEEEeecce---EEEecCccc
Confidence 45678999999999999999999999998 699999988889999999999886 3344443332 222334578
Q ss_pred CcEEEEc
Q 028335 196 PDYGNES 202 (210)
Q Consensus 196 fD~Iia~ 202 (210)
.|+||+.
T Consensus 128 VDiIvSE 134 (346)
T KOG1499|consen 128 VDIIVSE 134 (346)
T ss_pred eeEEeeh
Confidence 8988863
No 30
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.96 E-value=4.4e-09 Score=84.19 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=56.4
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.++.+++||||||.|..++.+|++|..|+++|+ +.+++.+++-++..++. +.....|..+. .+ ...||+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~------i~~~~~Dl~~~---~~-~~~yD~ 97 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD------IRTRVADLNDF---DF-PEEYDF 97 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T------EEEEE-BGCCB---S--TTTEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce------eEEEEecchhc---cc-cCCcCE
Confidence 457889999999999999999999999999999 88999998888777764 56666665332 12 357999
Q ss_pred EEEccee
Q 028335 199 GNESLLL 205 (210)
Q Consensus 199 Iia~Dvi 205 (210)
|++.-|+
T Consensus 98 I~st~v~ 104 (192)
T PF03848_consen 98 IVSTVVF 104 (192)
T ss_dssp EEEESSG
T ss_pred EEEEEEe
Confidence 9986544
No 31
>PRK14967 putative methyltransferase; Provisional
Probab=98.95 E-value=1.1e-08 Score=83.77 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=64.3
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEE
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~ 179 (210)
.+.+++.++... ...++.+|||+|||+|.+++.+++.+. +|+++|+ +.+++.+++|+..++.. +.+.
T Consensus 21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~------~~~~ 89 (223)
T PRK14967 21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD------VDVR 89 (223)
T ss_pred cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe------eEEE
Confidence 356677777642 134678999999999999999998876 8999999 89999999999887643 4444
Q ss_pred EeeCCCCCCCCccCCCCcEEEEc
Q 028335 180 ELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
..++.+. +...+||+|++.
T Consensus 90 ~~d~~~~----~~~~~fD~Vi~n 108 (223)
T PRK14967 90 RGDWARA----VEFRPFDVVVSN 108 (223)
T ss_pred ECchhhh----ccCCCeeEEEEC
Confidence 4444322 234579999875
No 32
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.91 E-value=1.3e-08 Score=91.52 Aligned_cols=90 Identities=14% Similarity=-0.017 Sum_probs=65.5
Q ss_pred HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 028335 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (210)
Q Consensus 103 a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l 181 (210)
+..+.+.+..... ..++.+|||||||+|.+++.+++.+.+|+++|. +.+++.+++|+..|+.. ++.+...
T Consensus 282 ~e~l~~~vl~~l~----~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~~~~~ 352 (443)
T PRK13168 282 NQKMVARALEWLD----PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-----NVTFYHA 352 (443)
T ss_pred HHHHHHHHHHHhc----CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEe
Confidence 3445555544321 236789999999999999999998889999999 99999999999998764 4677777
Q ss_pred eCCCCCC-CCccCCCCcEEEE
Q 028335 182 TWGDDPD-QDLIQPLPDYGNE 201 (210)
Q Consensus 182 ~w~~~~~-~~~~~~~fD~Iia 201 (210)
++.+... ..+.+.+||+|+.
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEE
Confidence 7644321 1122346888875
No 33
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.91 E-value=1.6e-08 Score=82.33 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=57.5
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCC---EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~---~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
..++.+|||+|||+|..+..+++... +|+++|. +++++.+++|+..++.. ++.+...+...... ...+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-----~v~~~~~d~~~~~~---~~~~ 146 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-----NVIVIVGDGTQGWE---PLAP 146 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CeEEEECCcccCCc---ccCC
Confidence 34788999999999999999998743 5999999 99999999999988753 35555544322211 2358
Q ss_pred CcEEEEcc
Q 028335 196 PDYGNESL 203 (210)
Q Consensus 196 fD~Iia~D 203 (210)
||+|+...
T Consensus 147 fD~Ii~~~ 154 (215)
T TIGR00080 147 YDRIYVTA 154 (215)
T ss_pred CCEEEEcC
Confidence 99998754
No 34
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.90 E-value=8.1e-09 Score=84.32 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=60.5
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++++..++.. .++.+...++.. .+.+||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~------~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA----GNITFEVGDLES------LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc----cCcEEEEcCchh------ccCCcCEE
Confidence 46789999999999999999988889999999 99999999998776542 245555555321 24679999
Q ss_pred EEcceee
Q 028335 200 NESLLLF 206 (210)
Q Consensus 200 ia~DviY 206 (210)
++.++++
T Consensus 132 ~~~~~l~ 138 (230)
T PRK07580 132 VCLDVLI 138 (230)
T ss_pred EEcchhh
Confidence 9999874
No 35
>PLN02244 tocopherol O-methyltransferase
Probab=98.89 E-value=1e-08 Score=89.21 Aligned_cols=80 Identities=18% Similarity=-0.035 Sum_probs=63.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.++.+|||+|||+|..+..+++. +++|+++|+ +.+++.+++++..++.. .++.+...+..+ ..+.+..||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~----~~v~~~~~D~~~---~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS----DKVSFQVADALN---QPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEcCccc---CCCCCCCccE
Confidence 36789999999999999999875 789999999 89999999998887654 346666555433 2334578999
Q ss_pred EEEcceeee
Q 028335 199 GNESLLLFL 207 (210)
Q Consensus 199 Iia~DviY~ 207 (210)
|++.+++++
T Consensus 190 V~s~~~~~h 198 (340)
T PLN02244 190 VWSMESGEH 198 (340)
T ss_pred EEECCchhc
Confidence 999888653
No 36
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=2.6e-08 Score=80.57 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=58.3
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||+|..+..+++. +.+|+++|. +.+++.+++|+..++.. +++.+...+..+... .+.+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~----~~v~~~~~d~~~~~~---~~~~f 143 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW----GVVEVYHGDGKRGLE---KHAPF 143 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEECCcccCCc---cCCCc
Confidence 36789999999999999988875 358999999 99999999999888754 345555544322211 24689
Q ss_pred cEEEEccee
Q 028335 197 DYGNESLLL 205 (210)
Q Consensus 197 D~Iia~Dvi 205 (210)
|.|++.-.+
T Consensus 144 D~Ii~~~~~ 152 (205)
T PRK13944 144 DAIIVTAAA 152 (205)
T ss_pred cEEEEccCc
Confidence 999987553
No 37
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.89 E-value=2e-09 Score=78.76 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=58.3
Q ss_pred CCEEEEECCccCHHHHHHHHcC-CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 123 GKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~g-~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
|.+|||+|||+|.+.+.+++.+ .+++++|+ +.+++.++.|+..++.. .++.+...++.+.. ..+...+||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~----~~~~~~~~D~~~~~-~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD----DRVEVIVGDARDLP-EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT----TTEEEEESHHHHHH-HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC----ceEEEEECchhhch-hhccCceeEEEE
Confidence 4589999999999999999988 79999999 99999999999998764 45666666653321 123457899998
Q ss_pred Ecc
Q 028335 201 ESL 203 (210)
Q Consensus 201 a~D 203 (210)
+.-
T Consensus 76 ~np 78 (117)
T PF13659_consen 76 TNP 78 (117)
T ss_dssp E--
T ss_pred ECC
Confidence 754
No 38
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.88 E-value=2.4e-08 Score=86.95 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=70.0
Q ss_pred eEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHH
Q 028335 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDR 155 (210)
Q Consensus 79 ~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~ 155 (210)
.+.+...|+.++..+.. .++..|...+.. ....+|||||||+|.+++.++++. .+|+++|. +.+
T Consensus 166 ~l~i~~~pgvFs~~~lD-----~gt~lLl~~l~~--------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~A 232 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLD-----VGSQLLLSTLTP--------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAA 232 (342)
T ss_pred CEEEEeCCCCCCCCCCC-----HHHHHHHHhccc--------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 46777778887755431 234444444432 134579999999999999999874 48999999 899
Q ss_pred HHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEccee
Q 028335 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLLL 205 (210)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~Dvi 205 (210)
++.+++|++.|++. ..+...+ .... ...+||+|++.-.+
T Consensus 233 l~~A~~nl~~n~l~------~~~~~~D---~~~~--~~~~fDlIvsNPPF 271 (342)
T PRK09489 233 LESSRATLAANGLE------GEVFASN---VFSD--IKGRFDMIISNPPF 271 (342)
T ss_pred HHHHHHHHHHcCCC------CEEEEcc---cccc--cCCCccEEEECCCc
Confidence 99999999999764 2222222 2221 24579999886543
No 39
>PRK14968 putative methyltransferase; Provisional
Probab=98.86 E-value=2.9e-08 Score=78.29 Aligned_cols=90 Identities=20% Similarity=0.183 Sum_probs=66.2
Q ss_pred eccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEE
Q 028335 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (210)
Q Consensus 100 W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~ 178 (210)
++.+.++..++.. .++++|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++... ..+.+
T Consensus 9 ~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~ 77 (188)
T PRK14968 9 AEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRN---NGVEV 77 (188)
T ss_pred chhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCC---cceEE
Confidence 4556666666642 36789999999999999999988889999999 999999999998887541 11455
Q ss_pred EEeeCCCCCCCCccCCCCcEEEEcce
Q 028335 179 TELTWGDDPDQDLIQPLPDYGNESLL 204 (210)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~Dv 204 (210)
...++.+. +....||+|++...
T Consensus 78 ~~~d~~~~----~~~~~~d~vi~n~p 99 (188)
T PRK14968 78 IRSDLFEP----FRGDKFDVILFNPP 99 (188)
T ss_pred Eecccccc----ccccCceEEEECCC
Confidence 55554332 12337999987543
No 40
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.85 E-value=2.9e-08 Score=85.50 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=56.3
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
++.+|||+|||+|.+++.+++.+.+|+++|. +.+++.+++|++.|++. ++.+...+..+.... ...+||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~-----~v~~~~~D~~~~~~~--~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLT-----NVQFQALDSTQFATA--QGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEcCHHHHHHh--cCCCCeEEE
Confidence 5689999999999999999999989999999 99999999999999763 456655553222110 123578776
Q ss_pred E
Q 028335 201 E 201 (210)
Q Consensus 201 a 201 (210)
.
T Consensus 246 ~ 246 (315)
T PRK03522 246 V 246 (315)
T ss_pred E
Confidence 4
No 41
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.85 E-value=1.4e-08 Score=86.19 Aligned_cols=73 Identities=23% Similarity=0.217 Sum_probs=56.8
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
++.+|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|+..|+.. .++.+...++.+. +...+||+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~----~~i~~~~~D~~~~----~~~~~fD~ 192 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE----DRVTLIQSDLFAA----LPGRKYDL 192 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhhc----cCCCCccE
Confidence 3568999999999999999986 458999999 99999999999998764 3566666665322 12346888
Q ss_pred EEEc
Q 028335 199 GNES 202 (210)
Q Consensus 199 Iia~ 202 (210)
|++.
T Consensus 193 Iv~N 196 (284)
T TIGR03533 193 IVSN 196 (284)
T ss_pred EEEC
Confidence 8874
No 42
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.84 E-value=2.6e-08 Score=86.05 Aligned_cols=80 Identities=18% Similarity=0.034 Sum_probs=56.4
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+++++|||+|||+|..+..++..|+ +|+++|. +.++...+......+.. .++.+...+..+. .. ..+||+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~l---p~-~~~FD~ 192 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQL---PA-LKAFDT 192 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHHC---CC-cCCcCE
Confidence 5789999999999999999998886 5999999 77764433322221111 2466666554332 12 468999
Q ss_pred EEEcceeeec
Q 028335 199 GNESLLLFLQ 208 (210)
Q Consensus 199 Iia~DviY~~ 208 (210)
|++..++|+.
T Consensus 193 V~s~~vl~H~ 202 (322)
T PRK15068 193 VFSMGVLYHR 202 (322)
T ss_pred EEECChhhcc
Confidence 9999999874
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=1.7e-08 Score=85.06 Aligned_cols=77 Identities=21% Similarity=0.172 Sum_probs=65.4
Q ss_pred cccCCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 119 LLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 119 ~~~~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.+.+|++|||||||.|.+++.+|+. +.+|+++++ ++..+.+++.+..-++. .++.+...+|.+. +++|
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~------~e~f 138 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF------EEPF 138 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc------cccc
Confidence 3568999999999999999999976 899999999 89999999999988876 5688888888654 2459
Q ss_pred cEEEEccee
Q 028335 197 DYGNESLLL 205 (210)
Q Consensus 197 D~Iia~Dvi 205 (210)
|-|++.+.+
T Consensus 139 DrIvSvgmf 147 (283)
T COG2230 139 DRIVSVGMF 147 (283)
T ss_pred ceeeehhhH
Confidence 999987753
No 44
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.82 E-value=3e-08 Score=87.83 Aligned_cols=88 Identities=20% Similarity=0.161 Sum_probs=62.0
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEE
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~ 178 (210)
.+..+.+.+.... .++.+|||||||+|.+++.+++. +.+|+++|+ +.+++.+++|++.++. ++.+
T Consensus 237 eTE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~f 304 (423)
T PRK14966 237 ETEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------RVEF 304 (423)
T ss_pred cHHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------cEEE
Confidence 3455555554421 24569999999999999998865 568999999 9999999999988753 3666
Q ss_pred EEeeCCCCCCCCccCCCCcEEEEcc
Q 028335 179 TELTWGDDPDQDLIQPLPDYGNESL 203 (210)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~D 203 (210)
...+|.+.... ...+||+|++.-
T Consensus 305 i~gDl~e~~l~--~~~~FDLIVSNP 327 (423)
T PRK14966 305 AHGSWFDTDMP--SEGKWDIIVSNP 327 (423)
T ss_pred EEcchhccccc--cCCCccEEEECC
Confidence 66665332110 124688888743
No 45
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.82 E-value=5.7e-08 Score=79.08 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEE
Q 028335 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (210)
Q Consensus 103 a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~ 178 (210)
+..+..++.+... ..++.+|||+|||+|..+..+++. + .+|+++|. +++++.+++|+..++.. ++.+
T Consensus 61 ~p~~~~~~~~~l~----~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-----~v~~ 131 (212)
T PRK13942 61 AIHMVAIMCELLD----LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-----NVEV 131 (212)
T ss_pred cHHHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEE
Confidence 3444444444322 347889999999999999998876 3 58999999 99999999999887653 3555
Q ss_pred EEeeCCCCCCCCccCCCCcEEEEcc
Q 028335 179 TELTWGDDPDQDLIQPLPDYGNESL 203 (210)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~D 203 (210)
..-+-.. ......+||+|++.-
T Consensus 132 ~~gd~~~---~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 132 IVGDGTL---GYEENAPYDRIYVTA 153 (212)
T ss_pred EECCccc---CCCcCCCcCEEEECC
Confidence 4444211 112346899998753
No 46
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.81 E-value=9.1e-09 Score=71.70 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=52.6
Q ss_pred EEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcce
Q 028335 127 VELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLL 204 (210)
Q Consensus 127 LELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~Dv 204 (210)
||+|||+|..+..+++. +.+|+++|. +.+++.++++....+ +.+...+.. +..+.+..||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~---~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAE---DLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTT---SSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHH---hCccccccccccccccc
Confidence 89999999999999999 779999999 889999888765443 224444433 33456789999999998
Q ss_pred eee
Q 028335 205 LFL 207 (210)
Q Consensus 205 iY~ 207 (210)
+++
T Consensus 70 ~~~ 72 (95)
T PF08241_consen 70 LHH 72 (95)
T ss_dssp GGG
T ss_pred eee
Confidence 864
No 47
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.81 E-value=1.4e-08 Score=81.89 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=46.2
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC-CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g-~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w 183 (210)
.++.+|||||||+|.+++.++..+ .+|+++|. +.+++.+++|++.++.. ++.+..-++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-----~v~~~~~D~ 111 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-----NARVVNTNA 111 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEEchH
Confidence 367799999999999999755444 58999999 99999999999998753 355554443
No 48
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.80 E-value=3.1e-08 Score=80.24 Aligned_cols=73 Identities=15% Similarity=0.055 Sum_probs=54.5
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++.+|||+|||+|..+..+++. +.+++++|+ +.+++.++++... +.+...+..+ .+.+..||
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~----------~~~~~~d~~~----~~~~~sfD 107 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN----------INIIQGSLFD----PFKDNFFD 107 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC----------CcEEEeeccC----CCCCCCEE
Confidence 36778999999999999998876 568999999 9999999887421 2222333222 23456899
Q ss_pred EEEEcceeee
Q 028335 198 YGNESLLLFL 207 (210)
Q Consensus 198 ~Iia~DviY~ 207 (210)
+|++..++++
T Consensus 108 ~V~~~~vL~h 117 (204)
T TIGR03587 108 LVLTKGVLIH 117 (204)
T ss_pred EEEECChhhh
Confidence 9999999864
No 49
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.80 E-value=4e-08 Score=84.50 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=61.9
Q ss_pred eccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceE
Q 028335 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (210)
Q Consensus 100 W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~ 177 (210)
|.+-.....++.+. ...++++|||+|||+|.+...++..|+ +|+++|. +.++..++......... .++.
T Consensus 104 ~~s~~~~~~~l~~l-----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~----~~v~ 174 (314)
T TIGR00452 104 WRSDIKWDRVLPHL-----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND----KRAI 174 (314)
T ss_pred HHHHHHHHHHHHhc-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC----CCeE
Confidence 55555444444431 246789999999999999999988887 6999999 77776543322211111 2344
Q ss_pred EEEeeCCCCCCCCccCCCCcEEEEcceeeec
Q 028335 178 VTELTWGDDPDQDLIQPLPDYGNESLLLFLQ 208 (210)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~DviY~~ 208 (210)
+..++.++.. ...+||+|++..++|+-
T Consensus 175 ~~~~~ie~lp----~~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 175 LEPLGIEQLH----ELYAFDTVFSMGVLYHR 201 (314)
T ss_pred EEECCHHHCC----CCCCcCEEEEcchhhcc
Confidence 4444433321 12479999999999874
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.79 E-value=1.1e-08 Score=81.63 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=54.5
Q ss_pred CEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
.++||+|||.|.++..+|.+..+++++|+ +.+++.+++.+... .++.+...+..+. .+..+||+|+.+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp~~----~P~~~FDLIV~S 113 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL-------PHVEWIQADVPEF----WPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT-------SS-EEEEEEE
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCCCC----CCCCCeeEEEEe
Confidence 48999999999999999998889999999 89999999987532 2466676664332 356799999999
Q ss_pred ceeee
Q 028335 203 LLLFL 207 (210)
Q Consensus 203 DviY~ 207 (210)
+|+|+
T Consensus 114 EVlYY 118 (201)
T PF05401_consen 114 EVLYY 118 (201)
T ss_dssp S-GGG
T ss_pred hHhHc
Confidence 99996
No 51
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.9e-08 Score=77.91 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=59.0
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+.++.+|||+|||+|..+..+|++..+|+.+|. +...+.+++|++..+.. ++.+..-|=..... ...|||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-----nV~v~~gDG~~G~~---~~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-----NVTVRHGDGSKGWP---EEAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCC---CCCCcCE
Confidence 458899999999999999999999889999999 99999999999988875 35555444111111 2379999
Q ss_pred EEEc
Q 028335 199 GNES 202 (210)
Q Consensus 199 Iia~ 202 (210)
|+..
T Consensus 142 I~Vt 145 (209)
T COG2518 142 IIVT 145 (209)
T ss_pred EEEe
Confidence 8754
No 52
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.79 E-value=3.7e-08 Score=83.26 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=57.0
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
+.+|.+|||||||.|.+++.+++. |++|+++.+ ++..+.+++.+...++. +.+.+...+|.+. .++||
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~----~~v~v~~~D~~~~------~~~fD 129 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE----DRVEVRLQDYRDL------PGKFD 129 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS----STEEEEES-GGG---------S-S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEeecccc------CCCCC
Confidence 568999999999999999999987 999999999 88899999999988875 5677777776432 23899
Q ss_pred EEEEcceee
Q 028335 198 YGNESLLLF 206 (210)
Q Consensus 198 ~Iia~DviY 206 (210)
.|++.+++-
T Consensus 130 ~IvSi~~~E 138 (273)
T PF02353_consen 130 RIVSIEMFE 138 (273)
T ss_dssp EEEEESEGG
T ss_pred EEEEEechh
Confidence 999988753
No 53
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=5.9e-09 Score=79.13 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHHHhccC
Q 028335 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 103 a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
...+|..+..-..+.-..++|++++|||||+|.+++.++..+++ |++.|+ +++++..++|++.-.++
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq 97 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ 97 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence 33344433333322234589999999999999999999888875 999999 99999999999877655
No 54
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.78 E-value=1.8e-08 Score=80.75 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=45.5
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+.+++||||+||+|.+|+.++.+|+ +|+++|. +.+++.+++|++.|+..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~ 98 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG 98 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc
Confidence 5789999999999999999999988 7999999 89999999999999764
No 55
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.78 E-value=6.8e-08 Score=85.11 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=49.1
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w 183 (210)
.+.+|||||||+|.+++.++..+.+|+++|. +.+++.+++|++.|+.. ++.+...+.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-----~~~~~~~d~ 290 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-----NLSFAALDS 290 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCH
Confidence 5679999999999999999988889999999 99999999999999763 455555553
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.76 E-value=8e-08 Score=70.43 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=54.5
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
++.+|||+|||+|..+..+++. +.+|+++|. +.+++.+++|+..++.. ++.+...+...... ...++||+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~D~ 91 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-----NIVIVEGDAPEALE--DSLPEPDR 91 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-----ceEEEeccccccCh--hhcCCCCE
Confidence 5679999999999999999876 358999999 89999999999887643 34443333221111 12357999
Q ss_pred EEEcc
Q 028335 199 GNESL 203 (210)
Q Consensus 199 Iia~D 203 (210)
|+..-
T Consensus 92 v~~~~ 96 (124)
T TIGR02469 92 VFIGG 96 (124)
T ss_pred EEECC
Confidence 98754
No 57
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.76 E-value=6.2e-08 Score=77.07 Aligned_cols=73 Identities=26% Similarity=0.210 Sum_probs=55.0
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++.+|||+|||+|.+++.+++.+ .+|+++|. +.+++.+++|+..++.. ++.+...+. .. . ...+||
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-----~i~~~~~d~---~~-~-~~~~~D 99 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-----NIDIIPGEA---PI-E-LPGKAD 99 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CeEEEecCc---hh-h-cCcCCC
Confidence 367899999999999999998764 48999999 99999999999888653 344443332 11 1 134799
Q ss_pred EEEEcc
Q 028335 198 YGNESL 203 (210)
Q Consensus 198 ~Iia~D 203 (210)
+|++..
T Consensus 100 ~v~~~~ 105 (187)
T PRK08287 100 AIFIGG 105 (187)
T ss_pred EEEECC
Confidence 998754
No 58
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.76 E-value=3.7e-08 Score=84.60 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=55.8
Q ss_pred CEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
.+|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|++.++.. +++.+...++.+.. ...+||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~----~~i~~~~~D~~~~l----~~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE----DRVTLIESDLFAAL----PGRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CcEEEEECchhhhC----CCCCccEEE
Confidence 68999999999999999976 458999999 99999999999998764 34666666653221 234688888
Q ss_pred Ec
Q 028335 201 ES 202 (210)
Q Consensus 201 a~ 202 (210)
+.
T Consensus 207 sN 208 (307)
T PRK11805 207 SN 208 (307)
T ss_pred EC
Confidence 74
No 59
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.76 E-value=1.2e-07 Score=76.99 Aligned_cols=75 Identities=16% Similarity=0.060 Sum_probs=56.8
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++|+..++.. ++.+...+..+.. ....+||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~---~~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH-----NVSVRHGDGWKGW---PAYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC-----ceEEEECCcccCC---CcCCCcCEE
Confidence 46789999999999999988888779999999 99999999999887653 3454444432211 123589999
Q ss_pred EEcc
Q 028335 200 NESL 203 (210)
Q Consensus 200 ia~D 203 (210)
+..-
T Consensus 149 ~~~~ 152 (212)
T PRK00312 149 LVTA 152 (212)
T ss_pred EEcc
Confidence 8753
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.75 E-value=5.3e-08 Score=82.51 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=53.7
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++|++|||+|||.|..+..++..|++ |+++|. ...+ ++-.+....+.. ...+....+..++... ...||
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~--~~~~~~lplgvE~Lp~----~~~FD 184 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQ--DPPVFELPLGVEDLPN----LGAFD 184 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCC--CccEEEcCcchhhccc----cCCcC
Confidence 479999999999999999999999984 999998 4432 222222221110 0112222222222211 35799
Q ss_pred EEEEcceeeecCC
Q 028335 198 YGNESLLLFLQAT 210 (210)
Q Consensus 198 ~Iia~DviY~~~~ 210 (210)
+|++..|+|+..+
T Consensus 185 tVF~MGVLYHrr~ 197 (315)
T PF08003_consen 185 TVFSMGVLYHRRS 197 (315)
T ss_pred EEEEeeehhccCC
Confidence 9999999998753
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.75 E-value=4.7e-08 Score=83.00 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=56.0
Q ss_pred CEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 124 KKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
.+|||+|||+|.+++.+++.. .+|+++|+ +.+++.+++|+..++.. +++.+...+|.+.. ...+||+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~----~~v~~~~~d~~~~~----~~~~fDlIv 187 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE----HRVEFIQSNLFEPL----AGQKIDIIV 187 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhccC----cCCCccEEE
Confidence 689999999999999999864 58999999 99999999999988764 34677766664422 223688887
Q ss_pred Ec
Q 028335 201 ES 202 (210)
Q Consensus 201 a~ 202 (210)
+.
T Consensus 188 sN 189 (284)
T TIGR00536 188 SN 189 (284)
T ss_pred EC
Confidence 74
No 62
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.75 E-value=5.7e-08 Score=78.11 Aligned_cols=76 Identities=24% Similarity=0.167 Sum_probs=56.2
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
..++.+|||+|||+|.+++.+++. +.+|+++|. +.+++.+++|+..+++. .++.+...+..+... ...++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~----~~v~~~~~d~~~~l~--~~~~~ 111 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL----NNIVLIKGEAPEILF--TINEK 111 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CCeEEEEechhhhHh--hcCCC
Confidence 457889999999999999998864 358999999 99999999999988743 245554444322111 12357
Q ss_pred CcEEEE
Q 028335 196 PDYGNE 201 (210)
Q Consensus 196 fD~Iia 201 (210)
||.|+.
T Consensus 112 ~D~V~~ 117 (198)
T PRK00377 112 FDRIFI 117 (198)
T ss_pred CCEEEE
Confidence 999987
No 63
>PRK06202 hypothetical protein; Provisional
Probab=98.75 E-value=2.4e-08 Score=82.09 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCCEEEEECCccCHHHHHHHHc----C--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL----G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~----g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~ 194 (210)
++.+|||||||+|.++..+++. | .+|+++|+ +++++.++++...++. .+...+-+.. . ..+.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~~~l-~--~~~~ 128 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--------TFRQAVSDEL-V--AEGE 128 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--------eEEEEecccc-c--ccCC
Confidence 5679999999999998888752 3 48999999 9999999888654432 2222221111 1 1346
Q ss_pred CCcEEEEcceeee
Q 028335 195 LPDYGNESLLLFL 207 (210)
Q Consensus 195 ~fD~Iia~DviY~ 207 (210)
+||+|+++.++++
T Consensus 129 ~fD~V~~~~~lhh 141 (232)
T PRK06202 129 RFDVVTSNHFLHH 141 (232)
T ss_pred CccEEEECCeeec
Confidence 8999999999864
No 64
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.75 E-value=3.9e-08 Score=84.71 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=55.0
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHh-ccCCCCCCceEEEEe-eCCCCCCCC-ccCCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTEL-TWGDDPDQD-LIQPL 195 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n-~~~~~~~~~~~~~~l-~w~~~~~~~-~~~~~ 195 (210)
++.++||||||+|.+...++.. +.+++++|+ +.+++.+++|++.| ++. .++.+... +-...+... .....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~----~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN----GAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc----CcEEEEEccchhhhhhcccccCCc
Confidence 3568999999999777776654 679999999 99999999999999 665 34444321 111111111 12346
Q ss_pred CcEEEEcceee
Q 028335 196 PDYGNESLLLF 206 (210)
Q Consensus 196 fD~Iia~DviY 206 (210)
||+|+|.--.|
T Consensus 190 fDlivcNPPf~ 200 (321)
T PRK11727 190 FDATLCNPPFH 200 (321)
T ss_pred eEEEEeCCCCc
Confidence 88888765544
No 65
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.75 E-value=2.2e-08 Score=71.68 Aligned_cols=70 Identities=27% Similarity=0.197 Sum_probs=52.8
Q ss_pred EEEECCccCHHHHHHHHcC-----CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 126 IVELGSGCGLVGCIAALLG-----AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 126 VLELGcGtGl~~l~la~~g-----~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
|||||||+|.....+++.. .+++++|+ +.+++.++++....+. ++.+...+..+. ...+.+||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l---~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDL---PFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCH---HHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHC---cccCCCeeEE
Confidence 7999999999999998763 68999999 9999999999877543 356666665432 2356799999
Q ss_pred EEcce
Q 028335 200 NESLL 204 (210)
Q Consensus 200 ia~Dv 204 (210)
+++..
T Consensus 72 ~~~~~ 76 (101)
T PF13649_consen 72 VCSGL 76 (101)
T ss_dssp EE-TT
T ss_pred EEcCC
Confidence 99654
No 66
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=1e-07 Score=79.41 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=56.1
Q ss_pred eccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-C-CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCce
Q 028335 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (210)
Q Consensus 100 W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g-~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~ 176 (210)
|++-. +.+++...+. +...+++..+||+|||+|.+++.+++. + ..|+|+|. +.++.++.+|++.+.+. +.+
T Consensus 128 pETEE-~V~~Vid~~~-~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~----g~i 201 (328)
T KOG2904|consen 128 PETEE-WVEAVIDALN-NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS----GRI 201 (328)
T ss_pred ccHHH-HHHHHHHHHh-hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc----Cce
Confidence 55444 3344433322 223456678999999999999998864 3 46999999 89999999999999887 566
Q ss_pred EEEEee
Q 028335 177 VVTELT 182 (210)
Q Consensus 177 ~~~~l~ 182 (210)
.+..++
T Consensus 202 ~v~~~~ 207 (328)
T KOG2904|consen 202 EVIHNI 207 (328)
T ss_pred EEEecc
Confidence 666553
No 67
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.73 E-value=7.2e-08 Score=78.42 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=67.4
Q ss_pred HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 028335 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (210)
Q Consensus 103 a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l 181 (210)
......|+......+.....+.+|||+|||+|.++..+++.+.+++++|. +.+++.+++|+..++.. ++.+...
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~~~~~~ 100 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-----KIEYRCT 100 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEeC
Confidence 33344666655433222346889999999999999999888889999999 89999999998876542 2344444
Q ss_pred eCCCCCCCCccCCCCcEEEEcceeee
Q 028335 182 TWGDDPDQDLIQPLPDYGNESLLLFL 207 (210)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~DviY~ 207 (210)
+..+.... ...+||+|++..+++.
T Consensus 101 d~~~~~~~--~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 101 SVEDLAEK--GAKSFDVVTCMEVLEH 124 (224)
T ss_pred CHHHhhcC--CCCCccEEEehhHHHh
Confidence 33222111 1358999999877653
No 68
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.72 E-value=1e-07 Score=83.66 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=63.0
Q ss_pred CceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHH
Q 028335 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDR 155 (210)
Q Consensus 77 g~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~ 155 (210)
|..+.++.++.+|..... ..+..|.+++..... ..+.+||||+||+|.+++.+++...+|+++|. +.+
T Consensus 172 ~~~~~~~~~~~sF~Q~N~------~~~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~a 240 (362)
T PRK05031 172 GREFIYRQVENSFTQPNA------AVNEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPS 240 (362)
T ss_pred CcEEEEEeCCCCeeccCH------HHHHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHH
Confidence 333555555655543332 234555555554321 12357999999999999999987779999999 999
Q ss_pred HHHHHHHHHHhccCCCCCCceEEEEeeC
Q 028335 156 LRLLKKNIENNLRHGDLRGSAVVTELTW 183 (210)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~~~~~~l~w 183 (210)
++.+++|+..|++. ++.+...+.
T Consensus 241 i~~a~~N~~~~~~~-----~v~~~~~d~ 263 (362)
T PRK05031 241 VAAAQYNIAANGID-----NVQIIRMSA 263 (362)
T ss_pred HHHHHHHHHHhCCC-----cEEEEECCH
Confidence 99999999999864 455555443
No 69
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=9.5e-09 Score=85.95 Aligned_cols=110 Identities=24% Similarity=0.322 Sum_probs=71.6
Q ss_pred cEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcC-CEEEEEeh-HHHHHHH-HHHHHHhccCC--
Q 028335 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLL-KKNIENNLRHG-- 170 (210)
Q Consensus 96 G~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g-~~Vv~tD~-~~~l~~~-~~N~~~n~~~~-- 170 (210)
|+++|.++..+..++.... .....+.+++|||||||+|+.++.+.+.| ..+.+.|. .+.++.. -.|+..|....
T Consensus 91 g~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~ 169 (282)
T KOG2920|consen 91 GLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVE 169 (282)
T ss_pred ceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhh
Confidence 7999999999999999654 22346799999999999999999999888 47999999 6766322 22222221110
Q ss_pred --CCCCceEEEEe---eCCCCCCCCccCCCCcEEEEcceeeecC
Q 028335 171 --DLRGSAVVTEL---TWGDDPDQDLIQPLPDYGNESLLLFLQA 209 (210)
Q Consensus 171 --~~~~~~~~~~l---~w~~~~~~~~~~~~fD~Iia~DviY~~~ 209 (210)
..........- +|--... ..-.||+|+++..||+..
T Consensus 170 ~~e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~ 210 (282)
T KOG2920|consen 170 EKENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSID 210 (282)
T ss_pred hhhcccceeccccccccchhhhc---cccchhhhhhhhhhhCcc
Confidence 00000111111 3311100 113899999999999875
No 70
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.71 E-value=1e-07 Score=86.33 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=59.3
Q ss_pred CCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
++.+|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|..... .++.+...++... .+.+.+||+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~~~---~~~~~~fD~I 336 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK------CSVEFEVADCTKK---TYPDNSFDVI 336 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCcccC---CCCCCCEEEE
Confidence 5779999999999999988864 779999999 899999998865222 2456666665432 2345689999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++.+++++
T Consensus 337 ~s~~~l~h 344 (475)
T PLN02336 337 YSRDTILH 344 (475)
T ss_pred EECCcccc
Confidence 99998864
No 71
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.70 E-value=1.3e-07 Score=77.43 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=57.3
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++++|||+|||+|..+..+++. +.+|+++|+ +.+++.+++|+..++.. ++.+...+..+ ..+.+.+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~---~~~~~~~f 115 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-----NVELVHGNAME---LPFDDNSF 115 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEEechhc---CCCCCCCc
Confidence 36789999999999999998865 348999999 99999999998766542 34444444322 12345689
Q ss_pred cEEEEccee
Q 028335 197 DYGNESLLL 205 (210)
Q Consensus 197 D~Iia~Dvi 205 (210)
|+|++..++
T Consensus 116 D~V~~~~~l 124 (231)
T TIGR02752 116 DYVTIGFGL 124 (231)
T ss_pred cEEEEeccc
Confidence 999987654
No 72
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.70 E-value=7.4e-08 Score=80.45 Aligned_cols=45 Identities=27% Similarity=0.453 Sum_probs=40.2
Q ss_pred CCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
..+|||||||+|.+++.+++. +.+|+++|+ +.+++.+++|+..|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~ 134 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG 134 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 458999999999999999865 458999999 999999999998875
No 73
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.68 E-value=1.5e-07 Score=84.26 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=56.4
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CccCCCCcEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPDYG 199 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~-~~~~~~fD~I 199 (210)
++.+|||||||+|.+++.+++.+.+|+++|. +.+++.+++|+..|+.. ++.+...++.+.... ...+.+||+|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~-----nv~~~~~d~~~~l~~~~~~~~~~D~v 366 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIA-----NVEFLAGTLETVLPKQPWAGQIPDVL 366 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCC-----ceEEEeCCHHHHHHHHHhcCCCCCEE
Confidence 5679999999999999999998889999999 99999999999998764 456655554321111 1123457777
Q ss_pred EE
Q 028335 200 NE 201 (210)
Q Consensus 200 ia 201 (210)
+.
T Consensus 367 i~ 368 (431)
T TIGR00479 367 LL 368 (431)
T ss_pred EE
Confidence 64
No 74
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=74.74 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=66.9
Q ss_pred ccHHHHHHHHhhhhhcCccccCCC-EEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCce
Q 028335 101 DSGVVLGKFLEHAVDSGMLLLHGK-KIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (210)
Q Consensus 101 ~aa~~la~~L~~~~~~~~~~~~~~-~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~ 176 (210)
++-..+..||..+....+ .-+.. +|||||||.|.+-..|++.|. +.+++|+ +.++++|+.-++.++.. +.+
T Consensus 46 ~ae~riv~wl~d~~~~~r-v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I 120 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISR-VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS----NEI 120 (227)
T ss_pred cHHHHHHHHHHhhhhhhh-hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC----cce
Confidence 345566778876543111 22333 999999999999999998875 4999999 89999988888888876 458
Q ss_pred EEEEeeCCCCCCCCccCCCCcEEEE
Q 028335 177 VVTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
++.+++.-++ .+...+||+|+-
T Consensus 121 ~f~q~DI~~~---~~~~~qfdlvlD 142 (227)
T KOG1271|consen 121 RFQQLDITDP---DFLSGQFDLVLD 142 (227)
T ss_pred eEEEeeccCC---cccccceeEEee
Confidence 8888875443 234456777763
No 75
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.68 E-value=1.3e-07 Score=78.67 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCCEEEEECCccCHHHHHHHHc----CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~----g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
++.+|||+|||+|..++.+++. +.+|+++|. +.|++.+++|+..++.. .++.+...+..+. ..+.+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~----~~v~~~~~d~~~~-----~~~~~ 126 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRDI-----AIENA 126 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEeCChhhC-----CCCCC
Confidence 6789999999999999888762 568999999 99999999999877653 3455555443221 12458
Q ss_pred cEEEEccee
Q 028335 197 DYGNESLLL 205 (210)
Q Consensus 197 D~Iia~Dvi 205 (210)
|+|++.-++
T Consensus 127 D~vv~~~~l 135 (247)
T PRK15451 127 SMVVLNFTL 135 (247)
T ss_pred CEEehhhHH
Confidence 998876554
No 76
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.68 E-value=7.3e-08 Score=88.03 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=54.8
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
++.+|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|+..+++. .++.+...+|-+. +...+||+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~----~~v~~~~~D~~~~----~~~~~fDl 209 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT----DRIQIIHSNWFEN----IEKQKFDF 209 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc----cceeeeecchhhh----CcCCCccE
Confidence 3468999999999999998864 568999999 89999999999888764 3455555554322 12346888
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
|++
T Consensus 210 Ivs 212 (506)
T PRK01544 210 IVS 212 (506)
T ss_pred EEE
Confidence 886
No 77
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.67 E-value=1.3e-07 Score=77.58 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=59.6
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||||||+|.++..+++.+.+|+++|. +.++..+++|+..++.. +.+...++..... ....+||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLK------IDYRQTTAEELAA--EHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCc------eEEEecCHHHhhh--hcCCCccEE
Confidence 47889999999999999999988889999999 89999999998766532 3444444433211 123589999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
+++.++.+
T Consensus 119 i~~~~l~~ 126 (233)
T PRK05134 119 TCMEMLEH 126 (233)
T ss_pred EEhhHhhc
Confidence 99877653
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.67 E-value=4.5e-08 Score=79.06 Aligned_cols=75 Identities=13% Similarity=-0.117 Sum_probs=56.3
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeC-CCCCCCCccCCCCc
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW-GDDPDQDLIQPLPD 197 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w-~~~~~~~~~~~~fD 197 (210)
.+.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|+..++.. ++.+...++ ... ...+...+||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~l-~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-----NLRLLCGDAVEVL-LDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-----CEEEEecCHHHHH-HHHcCccccc
Confidence 5679999999999999999876 347999999 99999999999887643 466666554 221 1112345799
Q ss_pred EEEEc
Q 028335 198 YGNES 202 (210)
Q Consensus 198 ~Iia~ 202 (210)
+|+..
T Consensus 114 ~V~~~ 118 (202)
T PRK00121 114 RIYLN 118 (202)
T ss_pred eEEEE
Confidence 99874
No 79
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.66 E-value=1.1e-07 Score=78.59 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+|.+|||+|||||-+++.+++.. .+|+++|+ +.||+.+++.+..-+.. + +.+..- +.....+.+.+||+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~----~-i~fv~~---dAe~LPf~D~sFD~ 122 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ----N-VEFVVG---DAENLPFPDNSFDA 122 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc----c-eEEEEe---chhhCCCCCCccCE
Confidence 78999999999999999999875 58999999 99999999998775543 2 444433 34444577889999
Q ss_pred EEEccee
Q 028335 199 GNESLLL 205 (210)
Q Consensus 199 Iia~Dvi 205 (210)
+.++=.+
T Consensus 123 vt~~fgl 129 (238)
T COG2226 123 VTISFGL 129 (238)
T ss_pred EEeeehh
Confidence 9887443
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.66 E-value=2.3e-07 Score=76.61 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceE
Q 028335 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (210)
Q Consensus 101 ~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~ 177 (210)
+.+..+...+..... ..+.+|||+|||+|.+++.+++. +.+++++|. +.+++.+++|+..++.. ++.
T Consensus 71 ~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~ 140 (251)
T TIGR03534 71 PDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-----NVT 140 (251)
T ss_pred CChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEE
Confidence 445555555544321 14568999999999999999986 458999999 99999999999887653 355
Q ss_pred EEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 178 VTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
+...++.+. +...+||+|++.
T Consensus 141 ~~~~d~~~~----~~~~~fD~Vi~n 161 (251)
T TIGR03534 141 FLQSDWFEP----LPGGKFDLIVSN 161 (251)
T ss_pred EEECchhcc----CcCCceeEEEEC
Confidence 555555432 234679998873
No 81
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.65 E-value=1.8e-07 Score=77.30 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=53.3
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||||.++..+++. + .+|+++|+ +.|++.+++++...+.. ++.+...+-. +..+.+.+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-----~i~~v~~da~---~lp~~d~sf 117 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-----NIEFVQGDAE---DLPFPDNSF 117 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTT---B--S-TT-E
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-----CeeEEEcCHH---HhcCCCCce
Confidence 37889999999999999999875 3 48999999 99999999999877643 4665555532 334567899
Q ss_pred cEEEEcceee
Q 028335 197 DYGNESLLLF 206 (210)
Q Consensus 197 D~Iia~DviY 206 (210)
|.|+++=.+.
T Consensus 118 D~v~~~fglr 127 (233)
T PF01209_consen 118 DAVTCSFGLR 127 (233)
T ss_dssp EEEEEES-GG
T ss_pred eEEEHHhhHH
Confidence 9999876554
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.65 E-value=2.7e-07 Score=77.38 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=55.5
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++.+|||+|||+|.+++.+++.. .+|+++|+ +.+++.+++|+. +... .++.+...++.... ...+||
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~----~~i~~~~~d~~~~~----~~~~fD 177 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG----ARVEFLQGDWFEPL----PGGRFD 177 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC----CcEEEEEccccCcC----CCCcee
Confidence 356799999999999999999864 68999999 899999999998 3222 34666666653322 135789
Q ss_pred EEEEc
Q 028335 198 YGNES 202 (210)
Q Consensus 198 ~Iia~ 202 (210)
+|++.
T Consensus 178 ~Iv~n 182 (275)
T PRK09328 178 LIVSN 182 (275)
T ss_pred EEEEC
Confidence 88873
No 83
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.65 E-value=1.3e-07 Score=79.54 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=57.6
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.+++.++++.... .++.+...+... ..+.+.+||+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~i~~~~~D~~~---~~~~~~~FD~ 120 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK-------NKIEFEANDILK---KDFPENTFDM 120 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC-------CceEEEECCccc---CCCCCCCeEE
Confidence 47789999999999999888764 779999999 89999999876431 235555555332 2234568999
Q ss_pred EEEcceeee
Q 028335 199 GNESLLLFL 207 (210)
Q Consensus 199 Iia~DviY~ 207 (210)
|++.++++.
T Consensus 121 V~s~~~l~h 129 (263)
T PTZ00098 121 IYSRDAILH 129 (263)
T ss_pred EEEhhhHHh
Confidence 999987653
No 84
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.65 E-value=4.7e-08 Score=92.52 Aligned_cols=76 Identities=20% Similarity=0.077 Sum_probs=57.5
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.++++|||||||+|.+++.+++.|+ +|+++|+ +.+++.+++|++.|++.. .++.+...+..+.... .+.+||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~---~~v~~i~~D~~~~l~~--~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG---RQHRLIQADCLAWLKE--AREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc---cceEEEEccHHHHHHH--cCCCcCE
Confidence 4688999999999999999999887 5999999 999999999999998641 2455555543221110 1356888
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
||+
T Consensus 612 Iil 614 (702)
T PRK11783 612 IFI 614 (702)
T ss_pred EEE
Confidence 876
No 85
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.65 E-value=3.5e-09 Score=75.41 Aligned_cols=75 Identities=17% Similarity=0.053 Sum_probs=44.9
Q ss_pred EEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcc
Q 028335 127 VELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESL 203 (210)
Q Consensus 127 LELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~D 203 (210)
||+|||+|.+...++.. ..+++++|+ +.+++.+++++...... ......+.-.+..... ...+||+|+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-----NFERLRFDVLDLFDYD-PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CC-C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-----ceeEEEeecCChhhcc-cccccceehhhh
Confidence 79999999999998877 668999999 89998888887776532 1222222222221111 124899999999
Q ss_pred eeee
Q 028335 204 LLFL 207 (210)
Q Consensus 204 viY~ 207 (210)
++++
T Consensus 75 vl~~ 78 (99)
T PF08242_consen 75 VLHH 78 (99)
T ss_dssp TTS-
T ss_pred hHhh
Confidence 9875
No 86
>PRK04148 hypothetical protein; Provisional
Probab=98.64 E-value=1.6e-07 Score=70.94 Aligned_cols=54 Identities=30% Similarity=0.347 Sum_probs=43.7
Q ss_pred HHHHHHhhhhhcCccccCCCEEEEECCccCH-HHHHHHHcCCEEEEEeh-HHHHHHHHHH
Q 028335 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGL-VGCIAALLGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 105 ~la~~L~~~~~~~~~~~~~~~VLELGcGtGl-~~l~la~~g~~Vv~tD~-~~~l~~~~~N 162 (210)
.+++||..+.. ..++++|||+|||+|. ++..+++.|.+|+++|+ +.+++.++++
T Consensus 3 ~i~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 3 TIAEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 36778876542 2356799999999996 99999999999999999 8887777665
No 87
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.64 E-value=1.8e-07 Score=78.58 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=58.0
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-CC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-GA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||+|..++.+++. +. +|+++|. +.+++.+++|+..++.. ++.+...++.. ..+.+.+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-----~v~~~~~d~~~---l~~~~~~f 147 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-----NVEFRLGEIEA---LPVADNSV 147 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-----CEEEEEcchhh---CCCCCCce
Confidence 47889999999999988877764 43 7999999 99999999998877643 34554444332 22345689
Q ss_pred cEEEEcceee
Q 028335 197 DYGNESLLLF 206 (210)
Q Consensus 197 D~Iia~DviY 206 (210)
|+|++.-+++
T Consensus 148 D~Vi~~~v~~ 157 (272)
T PRK11873 148 DVIISNCVIN 157 (272)
T ss_pred eEEEEcCccc
Confidence 9999876654
No 88
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.63 E-value=1.6e-07 Score=78.88 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=57.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||+|.++..+++. + .+|+++|+ ++|++.++++....... ...++.+...+..+ ..+.+.+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~--~~~~i~~~~~d~~~---lp~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS--CYKNIEWIEGDATD---LPFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc--cCCCeEEEEccccc---CCCCCCCE
Confidence 36789999999999999988875 4 48999999 99999998876421110 01245555544322 23456689
Q ss_pred cEEEEcceeee
Q 028335 197 DYGNESLLLFL 207 (210)
Q Consensus 197 D~Iia~DviY~ 207 (210)
|+|+++.++.+
T Consensus 147 D~V~~~~~l~~ 157 (261)
T PLN02233 147 DAITMGYGLRN 157 (261)
T ss_pred eEEEEeccccc
Confidence 99999887654
No 89
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.63 E-value=7e-08 Score=85.59 Aligned_cols=78 Identities=18% Similarity=0.002 Sum_probs=56.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-ccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~-~~~~~fD 197 (210)
.++++|||||||+|.+++.++..++ +|+++|. +.+++.+++|+..|++.. .++.+...|..+..... ..+.+||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~---~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 4788999999999999998877766 8999999 999999999999998641 23455444432211000 0134688
Q ss_pred EEEE
Q 028335 198 YGNE 201 (210)
Q Consensus 198 ~Iia 201 (210)
+||+
T Consensus 296 lVil 299 (396)
T PRK15128 296 VIVM 299 (396)
T ss_pred EEEE
Confidence 8874
No 90
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.62 E-value=1.2e-07 Score=78.40 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=55.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCc---cC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL---IQ 193 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~---~~ 193 (210)
.+.++|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.+++. .++.+..-+..+..+... ..
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHHhCCCC
Confidence 47889999999999988887764 348999999 99999999999999875 355555554433211110 13
Q ss_pred CCCcEEEE
Q 028335 194 PLPDYGNE 201 (210)
Q Consensus 194 ~~fD~Iia 201 (210)
++||+|+.
T Consensus 143 ~~fD~Vfi 150 (234)
T PLN02781 143 PEFDFAFV 150 (234)
T ss_pred CCCCEEEE
Confidence 47888764
No 91
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.62 E-value=1.2e-07 Score=78.84 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=53.2
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
+..+|||+|||+|.++..+++.+.+|+++|+ +.+++.++++... ..+...+... ..+.+.+||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~---~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA----------DHYLAGDIES---LPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC----------CCEEEcCccc---CcCCCCcEEEEE
Confidence 4678999999999999999888899999999 9999998887421 1122233222 223456899999
Q ss_pred Ecceee
Q 028335 201 ESLLLF 206 (210)
Q Consensus 201 a~DviY 206 (210)
+..++.
T Consensus 109 s~~~l~ 114 (251)
T PRK10258 109 SNLAVQ 114 (251)
T ss_pred ECchhh
Confidence 987664
No 92
>PLN02672 methionine S-methyltransferase
Probab=98.62 E-value=1.1e-07 Score=92.71 Aligned_cols=96 Identities=17% Similarity=0.039 Sum_probs=65.4
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCC--------
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHG-------- 170 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~-------- 170 (210)
-+..|.+.|.... ...+++++|||||||+|.+++.+++.. .+|+++|+ +++++.+++|+..|+++-
T Consensus 101 eTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 101 WSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 3555666654321 113467799999999999999999763 58999999 999999999999986430
Q ss_pred ---CCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 171 ---DLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 171 ---~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
....++.+..-||.+.... ...+||+||+.
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSN 210 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRD--NNIELDRIVGC 210 (1082)
T ss_pred ccccccccEEEEECchhhhccc--cCCceEEEEEC
Confidence 0113567777676543210 11258888774
No 93
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.62 E-value=2.3e-07 Score=76.63 Aligned_cols=76 Identities=11% Similarity=-0.041 Sum_probs=56.1
Q ss_pred CCCEEEEECCccCHHHHHHHHc----CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~----g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
++.+|||+|||+|..+..+++. +.+|+++|+ +.|++.+++++...... .++.+...++.+. ..+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~----~~v~~~~~d~~~~-----~~~~~ 123 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCNDIRHV-----EIKNA 123 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECChhhC-----CCCCC
Confidence 6779999999999999988864 468999999 99999999998765432 2455555554332 12458
Q ss_pred cEEEEcceee
Q 028335 197 DYGNESLLLF 206 (210)
Q Consensus 197 D~Iia~DviY 206 (210)
|+|++..++.
T Consensus 124 d~v~~~~~l~ 133 (239)
T TIGR00740 124 SMVILNFTLQ 133 (239)
T ss_pred CEEeeecchh
Confidence 8888776643
No 94
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.61 E-value=2.5e-07 Score=75.57 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCCEEEEECCccCHHHHHHHHcC---CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
++.+|||+|||+|..+..+++.+ .+++++|+ +.+++.+++++..++.. .++.+...+..+.. ....+||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~---~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS----GNVEFVQGDAEALP---FPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc----cCeEEEecccccCC---CCCCCcc
Confidence 56899999999999999998765 68999999 89999999998765433 34555555543322 2346799
Q ss_pred EEEEcceee
Q 028335 198 YGNESLLLF 206 (210)
Q Consensus 198 ~Iia~DviY 206 (210)
+|+++-++.
T Consensus 124 ~I~~~~~l~ 132 (239)
T PRK00216 124 AVTIAFGLR 132 (239)
T ss_pred EEEEecccc
Confidence 999876654
No 95
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.61 E-value=7e-07 Score=78.14 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=62.9
Q ss_pred CceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHH
Q 028335 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDR 155 (210)
Q Consensus 77 g~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~ 155 (210)
|..+.+.+++.+|..... .....|..++.+... ..+.+|||||||+|.+++.+++...+|+++|. +.+
T Consensus 163 ~~~~~~~~~~~~F~Q~N~------~~~~~l~~~v~~~~~-----~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~a 231 (353)
T TIGR02143 163 GREFIYRQVENSFTQPNA------AVNIKMLEWACEVTQ-----GSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPS 231 (353)
T ss_pred CeEEEEEECCCCcccCCH------HHHHHHHHHHHHHhh-----cCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHH
Confidence 434667777766554332 223344444443221 12347999999999999999987779999999 999
Q ss_pred HHHHHHHHHHhccCCCCCCceEEEEeeC
Q 028335 156 LRLLKKNIENNLRHGDLRGSAVVTELTW 183 (210)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~~~~~~l~w 183 (210)
++.+++|+..|++. ++.+...+.
T Consensus 232 v~~a~~n~~~~~~~-----~v~~~~~d~ 254 (353)
T TIGR02143 232 VNAAQYNIAANNID-----NVQIIRMSA 254 (353)
T ss_pred HHHHHHHHHHcCCC-----cEEEEEcCH
Confidence 99999999999864 355555443
No 96
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.60 E-value=1.3e-07 Score=72.40 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=51.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++++|||+|||+|..+..+++.+.+|+++|+ +.+++. .+ .......- ........+||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~---------~~~~~~~~---~~~~~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN---------VVFDNFDA---QDPPFPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT---------SEEEEEEC---HTHHCHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh---------hhhhhhhh---hhhhccccchhhH
Confidence 57889999999999999999999999999999 888776 11 11112210 0112245689999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++.+++++
T Consensus 83 ~~~~~l~~ 90 (161)
T PF13489_consen 83 ICNDVLEH 90 (161)
T ss_dssp EEESSGGG
T ss_pred hhHHHHhh
Confidence 99999875
No 97
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.60 E-value=2e-07 Score=75.96 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=58.4
Q ss_pred CEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
++|||+|||+|..+..+++. +.+|+++|+ +.+++.+++++...+.. .++.+...+.... . ...+||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~----~~i~~~~~d~~~~---~-~~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ----GRIRIFYRDSAKD---P-FPDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC----cceEEEecccccC---C-CCCCCCEee
Confidence 47999999999999988875 358999999 89999999999877654 4566666654332 1 134799999
Q ss_pred Ecceeee
Q 028335 201 ESLLLFL 207 (210)
Q Consensus 201 a~DviY~ 207 (210)
+..+++.
T Consensus 73 ~~~~l~~ 79 (224)
T smart00828 73 GFEVIHH 79 (224)
T ss_pred hHHHHHh
Confidence 9877653
No 98
>PRK05785 hypothetical protein; Provisional
Probab=98.60 E-value=1.1e-07 Score=78.29 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=52.2
Q ss_pred CCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
++.+|||||||||.++..+++. +.+|+++|. ++|++.++.+. . ....+. ....+.+.+||+|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-----~--------~~~~d~---~~lp~~d~sfD~v 114 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-----D--------KVVGSF---EALPFRDKSFDVV 114 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-----c--------eEEech---hhCCCCCCCEEEE
Confidence 4679999999999999999887 679999999 99999887641 0 011121 1223456789999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
+++.++.+
T Consensus 115 ~~~~~l~~ 122 (226)
T PRK05785 115 MSSFALHA 122 (226)
T ss_pred EecChhhc
Confidence 99988754
No 99
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.59 E-value=2.2e-07 Score=72.84 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=53.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++|+..+ .++.+...+..+. .+...+||+|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~~---~~~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALKF---DLPKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhcC---CccccCCCEE
Confidence 36679999999999999999988889999999 89999999997541 2344444443322 1122357877
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++ +.-|+
T Consensus 82 i~-n~Py~ 88 (169)
T smart00650 82 VG-NLPYN 88 (169)
T ss_pred EE-CCCcc
Confidence 65 34444
No 100
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.58 E-value=5e-07 Score=75.24 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=52.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++.+|||||||+|.++..+++. +.+|+++|+ +.+++.+++++. ++.+...+.... ....+||
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~----~~~~~fD 95 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEADIASW----QPPQALD 95 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhcc----CCCCCcc
Confidence 35789999999999999998875 468999999 899999988742 122222222111 1235899
Q ss_pred EEEEcceee
Q 028335 198 YGNESLLLF 206 (210)
Q Consensus 198 ~Iia~DviY 206 (210)
+|++..++.
T Consensus 96 ~v~~~~~l~ 104 (258)
T PRK01683 96 LIFANASLQ 104 (258)
T ss_pred EEEEccChh
Confidence 999988764
No 101
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.57 E-value=4.8e-07 Score=71.68 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=48.3
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~ 182 (210)
+.++.+++|+|||||.+++.++..+ .+|+++|. +++++++++|++..+.. ++.+..-+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-----n~~vv~g~ 92 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-----NLEVVEGD 92 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-----cEEEEecc
Confidence 4588899999999999999999654 48999999 99999999999998854 45554443
No 102
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.57 E-value=1.8e-07 Score=78.00 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=52.3
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++.+|||+|||+|.++..+++. +.+|+++|+ +.+++.++++ + +.+...+..+. ...++||
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~--------~~~~~~d~~~~----~~~~~fD 91 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G--------VDARTGDVRDW----KPKPDTD 91 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C--------CcEEEcChhhC----CCCCCce
Confidence 36789999999999999999887 668999999 8999888653 1 22333332211 1246899
Q ss_pred EEEEcceeee
Q 028335 198 YGNESLLLFL 207 (210)
Q Consensus 198 ~Iia~DviY~ 207 (210)
+|++..++++
T Consensus 92 ~v~~~~~l~~ 101 (255)
T PRK14103 92 VVVSNAALQW 101 (255)
T ss_pred EEEEehhhhh
Confidence 9999988754
No 103
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.55 E-value=4.2e-07 Score=73.92 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=54.5
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-CC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-GA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
+.++.+|||+|||+|+.+..++++ +. +|+++|. +.+.+.+++|+...+.. ++.+..-+-.... -...|
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-----nv~~~~gdg~~g~---~~~ap 141 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-----NVEVVVGDGSEGW---PEEAP 141 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-----SEEEEES-GGGTT---GGG-S
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-----ceeEEEcchhhcc---ccCCC
Confidence 458899999999999999999987 43 6999999 99999999999988764 4555554411111 12458
Q ss_pred CcEEEEcc
Q 028335 196 PDYGNESL 203 (210)
Q Consensus 196 fD~Iia~D 203 (210)
||.|+..-
T Consensus 142 fD~I~v~~ 149 (209)
T PF01135_consen 142 FDRIIVTA 149 (209)
T ss_dssp EEEEEESS
T ss_pred cCEEEEee
Confidence 99998753
No 104
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.54 E-value=1.7e-07 Score=74.67 Aligned_cols=49 Identities=29% Similarity=0.481 Sum_probs=41.8
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+++.+||||.||||.+|+.++.+|+ +|+++|. +.++..+++|++.-+..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~ 91 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE 91 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999998987 7999999 89999999999987754
No 105
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.53 E-value=7.8e-07 Score=77.04 Aligned_cols=73 Identities=21% Similarity=0.094 Sum_probs=54.8
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|.+.+.++..+++++++|+ +.+++.++.|+..++.. .+.+...+..+ ..+...+||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~~---l~~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDATK---LPLSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchhc---CCcccCCCCEE
Confidence 46789999999999999998888999999999 89999999999888765 13333333222 12223567877
Q ss_pred EE
Q 028335 200 NE 201 (210)
Q Consensus 200 ia 201 (210)
++
T Consensus 253 v~ 254 (329)
T TIGR01177 253 AT 254 (329)
T ss_pred EE
Confidence 76
No 106
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.53 E-value=7.7e-07 Score=76.86 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=54.6
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC---CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||+|.+++.+++.. .+|+++|. +.+++.+++|+..++.. ++.+...+.... .....+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-----nV~~i~gD~~~~---~~~~~~f 150 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-----NVIFVCGDGYYG---VPEFAPY 150 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCChhhc---ccccCCc
Confidence 467899999999999999999763 36999999 99999999999888754 344443332111 1122479
Q ss_pred cEEEEc
Q 028335 197 DYGNES 202 (210)
Q Consensus 197 D~Iia~ 202 (210)
|+|+.+
T Consensus 151 D~Ii~~ 156 (322)
T PRK13943 151 DVIFVT 156 (322)
T ss_pred cEEEEC
Confidence 999875
No 107
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.52 E-value=4.2e-07 Score=77.81 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=63.2
Q ss_pred CccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEehHHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 117 GMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 117 ~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
+...|.++.|||+|||+|++++++++.|+ +|.+++..+|.+.+++-++.|.+. .++.+..-..++. . ...+
T Consensus 172 N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~----~rItVI~GKiEdi---e-LPEk 243 (517)
T KOG1500|consen 172 NHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLA----DRITVIPGKIEDI---E-LPEK 243 (517)
T ss_pred cccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCcc----ceEEEccCccccc---c-Cchh
Confidence 34568999999999999999999999998 699999999999999999999766 5666665554333 2 2357
Q ss_pred CcEEEEcc
Q 028335 196 PDYGNESL 203 (210)
Q Consensus 196 fD~Iia~D 203 (210)
.|+||..-
T Consensus 244 ~DviISEP 251 (517)
T KOG1500|consen 244 VDVIISEP 251 (517)
T ss_pred ccEEEecc
Confidence 88888754
No 108
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.50 E-value=2.6e-07 Score=74.10 Aligned_cols=75 Identities=9% Similarity=-0.125 Sum_probs=52.5
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
...+|||||||+|.+++.+++. ..+|+++|+ +.+++.+++|+..+++. ++.+...+..+.....+.+..+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-----ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-----NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-----CEEEEccCHHHHHHhhCCCCceeE
Confidence 4568999999999999999987 458999999 89999999999877653 355554443221111112235666
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
|+.
T Consensus 91 v~~ 93 (194)
T TIGR00091 91 VFL 93 (194)
T ss_pred EEE
Confidence 654
No 109
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.49 E-value=8.7e-07 Score=78.36 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=55.0
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
+.++.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++++. +. .+.+...++... ..+||
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l------~v~~~~~D~~~l------~~~fD 230 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL------PVEIRLQDYRDL------NGQFD 230 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC------eEEEEECchhhc------CCCCC
Confidence 347889999999999999988875 789999999 999999999874 21 134444443221 35799
Q ss_pred EEEEcceee
Q 028335 198 YGNESLLLF 206 (210)
Q Consensus 198 ~Iia~DviY 206 (210)
.|++..++.
T Consensus 231 ~Ivs~~~~e 239 (383)
T PRK11705 231 RIVSVGMFE 239 (383)
T ss_pred EEEEeCchh
Confidence 999887654
No 110
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.48 E-value=8.4e-07 Score=75.93 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=60.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC--CEEEEEehHHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.++.+|||+|||+|.+++.+++.. .+++++|.+.+++.+++|+...++. +++.+...+..+. .+ +++|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~----~rv~~~~~d~~~~---~~--~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA----DRMRGIAVDIYKE---SY--PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCcc----ceEEEEecCccCC---CC--CCCCE
Confidence 356799999999999999999874 5799999988999999999888765 4566666654321 11 35799
Q ss_pred EEEcceeee
Q 028335 199 GNESLLLFL 207 (210)
Q Consensus 199 Iia~DviY~ 207 (210)
|+.+-++|+
T Consensus 219 v~~~~~lh~ 227 (306)
T TIGR02716 219 VLFCRILYS 227 (306)
T ss_pred EEeEhhhhc
Confidence 998888764
No 111
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.48 E-value=1.7e-06 Score=70.63 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=43.0
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHH
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLL 159 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~ 159 (210)
....|.+|+.... ..++.+|||+|||.|.-++.+|.+|.+|+++|+ +.+++.+
T Consensus 19 p~~~l~~~~~~l~-----~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 19 VNPLLVKHWPALG-----LPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQF 72 (213)
T ss_pred CCHHHHHHHHhhC-----CCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 4566667765420 126679999999999999999999999999999 8888865
No 112
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.47 E-value=4e-07 Score=72.51 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=50.1
Q ss_pred CCCEEEEECCccCHHHHHHHH-cCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 122 HGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~-~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
++.+|||||||.|.+-..+.. ++.+..++|+ ++.+..+.+ ++ +.+.+.|..+... .+.+.+||+|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG--------v~Viq~Dld~gL~-~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG--------VSVIQGDLDEGLA-DFPDQSFDYV 79 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC--------CCEEECCHHHhHh-hCCCCCccEE
Confidence 788999999999987777765 5778999999 665433332 33 3345555544322 3567899999
Q ss_pred EEccee
Q 028335 200 NESLLL 205 (210)
Q Consensus 200 ia~Dvi 205 (210)
|.++.+
T Consensus 80 IlsqtL 85 (193)
T PF07021_consen 80 ILSQTL 85 (193)
T ss_pred ehHhHH
Confidence 999865
No 113
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.47 E-value=9e-07 Score=70.93 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=42.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.++.+|||+|||+|.+++.+++. +.+|+++|. +++++.+++|++.++..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~ 90 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK 90 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 36789999999999999998865 468999999 99999999999887653
No 114
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=4.6e-06 Score=75.11 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=55.4
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||+|..++.+++. ..+|+++|+ +.+++.+++|++.++.. ++.+...+..+... .+ ...|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~-~~-~~~f 321 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-----NIETKALDARKVHE-KF-AEKF 321 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCCcccccc-hh-cccC
Confidence 36789999999999999998875 358999999 99999999999988764 35555555433211 11 2579
Q ss_pred cEEEE
Q 028335 197 DYGNE 201 (210)
Q Consensus 197 D~Iia 201 (210)
|+|++
T Consensus 322 D~Vl~ 326 (444)
T PRK14902 322 DKILV 326 (444)
T ss_pred CEEEE
Confidence 99884
No 115
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.47 E-value=3.9e-07 Score=79.19 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=54.4
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
++.+|||||||+|.+++.+++. +.+|+++|. +.+++.++++...++ +.+...+.. +..+.+..||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~--------i~~i~gD~e---~lp~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--------CKIIEGDAE---DLPFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccC--------CeEEeccHH---hCCCCCCceeE
Confidence 5679999999999999888764 458999999 899999998865322 333333322 22234568999
Q ss_pred EEEcceeee
Q 028335 199 GNESLLLFL 207 (210)
Q Consensus 199 Iia~DviY~ 207 (210)
|+++.++..
T Consensus 182 VIs~~~L~~ 190 (340)
T PLN02490 182 YVSAGSIEY 190 (340)
T ss_pred EEEcChhhh
Confidence 999987753
No 116
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=7.3e-07 Score=79.82 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 028335 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (210)
Q Consensus 103 a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l 181 (210)
+..|..+...... ..++.++|||=||.|.+|+.+|+...+|+++|+ +++++.+++|++.|+.. ++.+...
T Consensus 278 ~ekl~~~a~~~~~----~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-----N~~f~~~ 348 (432)
T COG2265 278 AEKLYETALEWLE----LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-----NVEFIAG 348 (432)
T ss_pred HHHHHHHHHHHHh----hcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEeC
Confidence 4445555554432 236679999999999999999999999999999 99999999999999986 3666655
Q ss_pred eC
Q 028335 182 TW 183 (210)
Q Consensus 182 ~w 183 (210)
+-
T Consensus 349 ~a 350 (432)
T COG2265 349 DA 350 (432)
T ss_pred CH
Confidence 53
No 117
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.45 E-value=6e-07 Score=72.47 Aligned_cols=75 Identities=21% Similarity=0.141 Sum_probs=53.2
Q ss_pred ccCCCEEEEECCccCHHHHHHHH--cCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~--~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
..++..|+|+.||.|.+++.+|+ .+.+|++.|+ |.+++.+++|++.|++. +.+.....|..+... ...|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~~~----~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREFLP----EGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG-------TT-E
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHhcC----cccc
Confidence 34788999999999999999998 5668999999 99999999999999876 456666666433221 4567
Q ss_pred cEEEEc
Q 028335 197 DYGNES 202 (210)
Q Consensus 197 D~Iia~ 202 (210)
|-|++.
T Consensus 171 drvim~ 176 (200)
T PF02475_consen 171 DRVIMN 176 (200)
T ss_dssp EEEEE-
T ss_pred CEEEEC
Confidence 877764
No 118
>PRK08317 hypothetical protein; Provisional
Probab=98.44 E-value=2.2e-06 Score=69.62 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=55.5
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcC---CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
..++.+|||+|||+|..+..++... .+|+++|. +.+++.++++..... .++.+...+.... .+.+.+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~---~~~~~~ 87 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDADGL---PFPDGS 87 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEecccccC---CCCCCC
Confidence 3467899999999999999888752 48999999 899999988833221 2344444443221 234568
Q ss_pred CcEEEEcceee
Q 028335 196 PDYGNESLLLF 206 (210)
Q Consensus 196 fD~Iia~DviY 206 (210)
||+|++..++.
T Consensus 88 ~D~v~~~~~~~ 98 (241)
T PRK08317 88 FDAVRSDRVLQ 98 (241)
T ss_pred ceEEEEechhh
Confidence 99999987753
No 119
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.44 E-value=8.5e-07 Score=72.25 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=54.2
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.+..+|||||||+|..+..+++.+. +++++|. +.+++.++.+... ++.+...+..+. .+..++||
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~~~---~~~~~~fD 100 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAEKL---PLEDSSFD 100 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchhhC---CCCCCcee
Confidence 3457899999999999999988754 6899999 8888888776541 233334443222 23456899
Q ss_pred EEEEcceeee
Q 028335 198 YGNESLLLFL 207 (210)
Q Consensus 198 ~Iia~DviY~ 207 (210)
+|++..++++
T Consensus 101 ~vi~~~~l~~ 110 (240)
T TIGR02072 101 LIVSNLALQW 110 (240)
T ss_pred EEEEhhhhhh
Confidence 9999988764
No 120
>PRK04266 fibrillarin; Provisional
Probab=98.44 E-value=2.3e-06 Score=70.45 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=39.3
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
+.++.+|||+|||+|..++.+++.. .+|+++|. +.|++.+++++..
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~ 118 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE 118 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh
Confidence 4478899999999999999999863 48999999 8999988877654
No 121
>PHA03412 putative methyltransferase; Provisional
Probab=98.44 E-value=2e-07 Score=76.79 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=37.4
Q ss_pred CCCEEEEECCccCHHHHHHHHc-----CCEEEEEeh-HHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-----GAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-----g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 4679999999999999998864 348999999 899999998863
No 122
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.44 E-value=1.1e-06 Score=76.78 Aligned_cols=91 Identities=18% Similarity=0.099 Sum_probs=61.8
Q ss_pred cCceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HH
Q 028335 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PD 154 (210)
Q Consensus 76 ~g~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~ 154 (210)
.+..+.+..++.+|..... .....|-.++..... ..+.+||||-||+|.+|+.+|+...+|+|+|. +.
T Consensus 161 ~~~~~~~~~~~~sFfQvN~------~~~~~l~~~~~~~l~-----~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~ 229 (352)
T PF05958_consen 161 QDKGLSFRISPGSFFQVNP------EQNEKLYEQALEWLD-----LSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE 229 (352)
T ss_dssp CCCTEEEEEETTS---SBH------HHHHHHHHHHHHHCT-----T-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred eccceEEEECCCcCccCcH------HHHHHHHHHHHHHhh-----cCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence 3445666666766654442 345555555554432 12338999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEEEee
Q 028335 155 RLRLLKKNIENNLRHGDLRGSAVVTELT 182 (210)
Q Consensus 155 ~l~~~~~N~~~n~~~~~~~~~~~~~~l~ 182 (210)
+++.|++|+..|++. ++.+...+
T Consensus 230 av~~A~~Na~~N~i~-----n~~f~~~~ 252 (352)
T PF05958_consen 230 AVEDARENAKLNGID-----NVEFIRGD 252 (352)
T ss_dssp HHHHHHHHHHHTT-------SEEEEE--
T ss_pred HHHHHHHHHHHcCCC-----cceEEEee
Confidence 999999999999975 46666543
No 123
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.43 E-value=1.7e-06 Score=72.41 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=41.2
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
..++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~ 73 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA 73 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc
Confidence 346789999999999999999998889999999 8999999988754
No 124
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.42 E-value=1.7e-06 Score=73.86 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=55.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++|+..++.. .++.+..-|..... .++||.|
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~----~~v~ii~~Dal~~~-----~~~~d~V 105 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA----SKLEVIEGDALKTE-----FPYFDVC 105 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECCHhhhc-----ccccCEE
Confidence 46789999999999999999988889999999 89999999998776532 34555554432211 1356766
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++ ..=|+
T Consensus 106 va-NlPY~ 112 (294)
T PTZ00338 106 VA-NVPYQ 112 (294)
T ss_pred Ee-cCCcc
Confidence 64 34343
No 125
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.1e-06 Score=69.90 Aligned_cols=49 Identities=24% Similarity=0.446 Sum_probs=44.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+.+.++|||-+|+|.+|+.++.+|+ +++++|. ..++..+++|++.-+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~ 92 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE 92 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc
Confidence 6899999999999999999999988 6999999 89999999999877644
No 126
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=2.2e-06 Score=76.83 Aligned_cols=73 Identities=21% Similarity=0.091 Sum_probs=53.6
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++.+|||+|||+|..++.++..+ .+|+++|. +.++..+++|+..++.. +.+...+..+. ...+...+||
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~------~~~~~~D~~~~-~~~~~~~~fD 315 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK------ATVIVGDARDP-AQWWDGQPFD 315 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC------eEEEEcCcccc-hhhcccCCCC
Confidence 478899999999999999998764 48999999 99999999999988753 33333332211 1111235799
Q ss_pred EEE
Q 028335 198 YGN 200 (210)
Q Consensus 198 ~Ii 200 (210)
.|+
T Consensus 316 ~Vl 318 (427)
T PRK10901 316 RIL 318 (427)
T ss_pred EEE
Confidence 888
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=3.5e-06 Score=75.94 Aligned_cols=89 Identities=16% Similarity=0.060 Sum_probs=63.0
Q ss_pred EEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCC
Q 028335 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (210)
Q Consensus 97 ~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (210)
..+++.+..+...+.. ..++.+|||+|||+|..++.++.. +.+|+++|. +.+++.+++|+..++..
T Consensus 232 ~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--- 301 (445)
T PRK14904 232 VSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--- 301 (445)
T ss_pred EEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC---
Confidence 3566655555444442 247789999999999998888764 358999999 99999999999988753
Q ss_pred CCceEEEEeeCCCCCCCCccCCCCcEEEE
Q 028335 173 RGSAVVTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 173 ~~~~~~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
++.+...+..... ...+||.|+.
T Consensus 302 --~v~~~~~Da~~~~----~~~~fD~Vl~ 324 (445)
T PRK14904 302 --IIETIEGDARSFS----PEEQPDAILL 324 (445)
T ss_pred --eEEEEeCcccccc----cCCCCCEEEE
Confidence 3555554433221 2357999884
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.38 E-value=8.2e-06 Score=73.27 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=55.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||+|..++.++.+ +.+|+++|+ +.+++.+++|++..+.. ++.+...+...... ..+.+|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-----~v~~~~~Da~~l~~--~~~~~f 308 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-----SIEIKIADAERLTE--YVQDTF 308 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhhhhh--hhhccC
Confidence 47889999999999999988865 458999999 99999999999987754 35555555432211 124579
Q ss_pred cEEEE
Q 028335 197 DYGNE 201 (210)
Q Consensus 197 D~Iia 201 (210)
|.|++
T Consensus 309 D~Vl~ 313 (431)
T PRK14903 309 DRILV 313 (431)
T ss_pred CEEEE
Confidence 99885
No 129
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.38 E-value=1.3e-06 Score=79.16 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
++++|||||||+|.++..+++.+.+|+++|. +.+++.+++ .++.. .++.+...+.... ...+.+.+||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~----~~i~~~~~d~~~~-~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHY----KNVKFMCADVTSP-DLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccC----CceEEEEeccccc-ccCCCCCCEEEEe
Confidence 5679999999999999999998889999999 888865443 23221 2455555554322 1223456899999
Q ss_pred Ecceeee
Q 028335 201 ESLLLFL 207 (210)
Q Consensus 201 a~DviY~ 207 (210)
+..++++
T Consensus 109 ~~~~l~~ 115 (475)
T PLN02336 109 SNWLLMY 115 (475)
T ss_pred hhhhHHh
Confidence 9887764
No 130
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.38 E-value=1.6e-06 Score=73.13 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=40.0
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
.++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++|+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc
Confidence 46789999999999999999998889999999 999999988764
No 131
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.4e-06 Score=78.14 Aligned_cols=92 Identities=21% Similarity=0.188 Sum_probs=69.7
Q ss_pred EeecCceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh
Q 028335 73 IDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL 152 (210)
Q Consensus 73 ~~~~g~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~ 152 (210)
-.+.|.+|+|. ++.|-...+ .++.+|-.++..+.. +-.++.++|+.||||.+|+++|+...+|+++++
T Consensus 346 E~l~~ltF~iS--p~AFFQ~Nt------~~aevLys~i~e~~~----l~~~k~llDv~CGTG~iglala~~~~~ViGvEi 413 (534)
T KOG2187|consen 346 ESLLGLTFRIS--PGAFFQTNT------SAAEVLYSTIGEWAG----LPADKTLLDVCCGTGTIGLALARGVKRVIGVEI 413 (534)
T ss_pred eecCCeEEEEC--CchhhccCc------HHHHHHHHHHHHHhC----CCCCcEEEEEeecCCceehhhhccccceeeeec
Confidence 34444444444 666554444 457777777776542 346688999999999999999998889999999
Q ss_pred -HHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 028335 153 -PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (210)
Q Consensus 153 -~~~l~~~~~N~~~n~~~~~~~~~~~~~~l 181 (210)
+++++-|+.|+..|++. +..+..-
T Consensus 414 ~~~aV~dA~~nA~~Ngis-----Na~Fi~g 438 (534)
T KOG2187|consen 414 SPDAVEDAEKNAQINGIS-----NATFIVG 438 (534)
T ss_pred ChhhcchhhhcchhcCcc-----ceeeeec
Confidence 99999999999999986 4555544
No 132
>PRK06922 hypothetical protein; Provisional
Probab=98.35 E-value=1.7e-06 Score=80.48 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=54.8
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.|++.++++...++. ++.+...+-.+. ...+...+||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~------~ie~I~gDa~dL-p~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR------SWNVIKGDAINL-SSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------CeEEEEcchHhC-ccccCCCCEE
Confidence 46789999999999998888764 468999999 8999999988765432 233333332221 1113456899
Q ss_pred EEEEccee
Q 028335 198 YGNESLLL 205 (210)
Q Consensus 198 ~Iia~Dvi 205 (210)
+|+++-++
T Consensus 490 vVVsn~vL 497 (677)
T PRK06922 490 TIVYSSIL 497 (677)
T ss_pred EEEEchHH
Confidence 99987554
No 133
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.33 E-value=4.3e-07 Score=80.13 Aligned_cols=50 Identities=36% Similarity=0.321 Sum_probs=47.0
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
..+|++||+|-|-||..|+.+|..|| +|+.+|. +.+|+.+++|++.|++.
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~ 266 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD 266 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC
Confidence 34699999999999999999999999 8999999 89999999999999986
No 134
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.32 E-value=1e-06 Score=72.53 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=45.9
Q ss_pred EeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHH-HHHHH
Q 028335 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLR-LLKKN 162 (210)
Q Consensus 99 ~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~-~~~~N 162 (210)
++.++..|...+... ...+++++|||+|||||.++..+++.|+ +|+++|. +.++. .+++|
T Consensus 56 vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 56 VSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred hhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC
Confidence 456777777777653 1236888999999999999999999976 7999999 76654 34444
No 135
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.30 E-value=3.8e-06 Score=58.07 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=53.4
Q ss_pred EEEEECCccCHHHHHHHH-cCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 125 KIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~-~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
+++|+|||+|..+..+++ ...+++++|. +.++..++++...+.. ..+.+...++.+... ...++||+|++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPP--EADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhcc--ccCCceEEEEEc
Confidence 489999999999998887 4568999999 8888888864433322 235555555443322 134679999998
Q ss_pred ceeee
Q 028335 203 LLLFL 207 (210)
Q Consensus 203 DviY~ 207 (210)
.+++.
T Consensus 74 ~~~~~ 78 (107)
T cd02440 74 PPLHH 78 (107)
T ss_pred cceee
Confidence 88764
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.30 E-value=5.3e-06 Score=69.76 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=53.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||+|||+|..++.++.+ ...|+++|. +.+++.+++|++.++.. ++.+...+..... ...+.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~---~~~~~f 141 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-----NVAVTNFDGRVFG---AAVPKF 141 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEecCCHHHhh---hhccCC
Confidence 37889999999999999988865 248999999 99999999999998764 3444444422111 122458
Q ss_pred cEEEE
Q 028335 197 DYGNE 201 (210)
Q Consensus 197 D~Iia 201 (210)
|.|+.
T Consensus 142 D~Vl~ 146 (264)
T TIGR00446 142 DAILL 146 (264)
T ss_pred CEEEE
Confidence 88874
No 137
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=5e-06 Score=74.70 Aligned_cols=76 Identities=16% Similarity=0.006 Sum_probs=55.6
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CccCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPL 195 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~-~~~~~~ 195 (210)
.++.+|||+|||+|..++.++.+ ..+|+++|. +.+++.+++|++.++.. ++.+...+....... ......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-----~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-----SIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----eEEEEeCChhhccccccccccc
Confidence 36889999999999999998875 248999999 89999999999998764 355554443222110 012357
Q ss_pred CcEEEE
Q 028335 196 PDYGNE 201 (210)
Q Consensus 196 fD~Iia 201 (210)
||.|+.
T Consensus 326 fD~Vl~ 331 (434)
T PRK14901 326 FDRILL 331 (434)
T ss_pred CCEEEE
Confidence 999885
No 138
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.30 E-value=1.1e-06 Score=71.17 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEE
Q 028335 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (210)
Q Consensus 103 a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~ 178 (210)
+..-+++|..... ..+.++|||+||++|+-++.+|.. +.+|+.+|. ++..+.+++|++..+.. .++.+
T Consensus 30 ~~~~g~lL~~l~~----~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~ 101 (205)
T PF01596_consen 30 SPETGQLLQMLVR----LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEV 101 (205)
T ss_dssp HHHHHHHHHHHHH----HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEE
T ss_pred CHHHHHHHHHHHH----hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEE
Confidence 3444455543322 347889999999999999999974 569999999 89999999999998875 45666
Q ss_pred EEeeCCCCCCCCcc---CCCCcEEEE
Q 028335 179 TELTWGDDPDQDLI---QPLPDYGNE 201 (210)
Q Consensus 179 ~~l~w~~~~~~~~~---~~~fD~Iia 201 (210)
..-+..+....... ..+||+|+-
T Consensus 102 ~~gda~~~l~~l~~~~~~~~fD~VFi 127 (205)
T PF01596_consen 102 IEGDALEVLPELANDGEEGQFDFVFI 127 (205)
T ss_dssp EES-HHHHHHHHHHTTTTTSEEEEEE
T ss_pred EEeccHhhHHHHHhccCCCceeEEEE
Confidence 55443221111111 246888763
No 139
>PHA03411 putative methyltransferase; Provisional
Probab=98.30 E-value=7.2e-07 Score=75.06 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=36.4
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
...+|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 4568999999999999988775 468999999 99999998874
No 140
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.30 E-value=3e-06 Score=67.76 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=49.9
Q ss_pred CCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
++.+|||+|||+|.++..+++. +.+++++|. +.++..++.+ + +.+...+..+... .+.+.+||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~--------~~~~~~d~~~~l~-~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G--------VNVIQGDLDEGLE-AFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C--------CeEEEEEhhhccc-ccCCCCcCEE
Confidence 5679999999999998888754 567999999 8887776532 1 2233333322111 1234689999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
++..++++
T Consensus 80 i~~~~l~~ 87 (194)
T TIGR02081 80 ILSQTLQA 87 (194)
T ss_pred EEhhHhHc
Confidence 99988753
No 141
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.29 E-value=7.2e-06 Score=67.12 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=42.8
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHH
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~ 160 (210)
....|.+|+... ...++.+|||+|||.|.-++.+|.+|.+|+++|+ +.+++.+.
T Consensus 22 p~~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 22 VNPLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCHHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence 445566666531 1235679999999999999999999999999999 88888753
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.28 E-value=8.3e-06 Score=73.10 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=49.4
Q ss_pred ccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 101 ~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.++..++.+|. ..++.+|||+|||+|..++.++.. ..+|+++|. +.+++.+++|++.++..
T Consensus 225 ~~s~~~~~~L~--------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~ 288 (426)
T TIGR00563 225 ASAQWVATWLA--------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT 288 (426)
T ss_pred HHHHHHHHHhC--------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 35555555554 237789999999999999998875 368999999 99999999999988754
No 143
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.27 E-value=8.1e-07 Score=75.41 Aligned_cols=79 Identities=20% Similarity=-0.032 Sum_probs=56.3
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.++++||+|-|-||..|+.+++.|+ +|+.+|. ..+++.+++|+..|++.. .++.+...|.-+.....-...+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~---~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDL---DRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CC---TCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc---cceEEEecCHHHHHHHHhcCCCCCE
Confidence 4789999999999999999999888 6999999 899999999999999752 3455555442221111112458999
Q ss_pred EEEc
Q 028335 199 GNES 202 (210)
Q Consensus 199 Iia~ 202 (210)
||.-
T Consensus 199 IIlD 202 (286)
T PF10672_consen 199 IILD 202 (286)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9863
No 144
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.26 E-value=1.7e-06 Score=67.53 Aligned_cols=74 Identities=19% Similarity=0.002 Sum_probs=51.9
Q ss_pred EEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 125 KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
.|+|+.||.|--++.+|+...+|+++|+ +..++.++.|++.-+.. .++.+..-||.+.......+..||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~----~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVA----DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-G----GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999999999999999 89999999999998765 56777777765532211111126777654
No 145
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.26 E-value=2e-06 Score=76.00 Aligned_cols=47 Identities=36% Similarity=0.511 Sum_probs=42.2
Q ss_pred CCEEEEECCccCHHHHHHHHc-CC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 123 GKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+.+|||++||+|..|+.+++. ++ +|+++|+ +.+++.+++|++.|++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~ 107 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE 107 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 468999999999999999875 43 8999999 99999999999999865
No 146
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.25 E-value=2.9e-07 Score=74.98 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=49.2
Q ss_pred CCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEE
Q 028335 123 GKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
-+++||||||||+.|..+-.+..+.+++|+ ..|+..+.+.=--..+. ......+ .......+||+|.+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~-------~Aea~~F----l~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLY-------VAEAVLF----LEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHH-------HHHHHHH----hhhccCCcccchhh
Confidence 468999999999999999888889999999 78888776542111110 0000001 11123468999999
Q ss_pred ccee
Q 028335 202 SLLL 205 (210)
Q Consensus 202 ~Dvi 205 (210)
+||+
T Consensus 195 aDVl 198 (287)
T COG4976 195 ADVL 198 (287)
T ss_pred hhHH
Confidence 9996
No 147
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.24 E-value=4.8e-06 Score=68.00 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=57.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEE-eeCCCCCCCCccCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWGDDPDQDLIQPL 195 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~-l~w~~~~~~~~~~~~ 195 (210)
...++|||+|++.|+-++.+|.. ..+++.+|. ++..+.+++|++.-+.. .++.... .++.+.... ..+++
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal~~l~~-~~~~~ 132 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDALDVLSR-LLDGS 132 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHHHHHHh-ccCCC
Confidence 47889999999999999999974 247999999 99999999999998876 3444444 343332222 34578
Q ss_pred CcEEEE
Q 028335 196 PDYGNE 201 (210)
Q Consensus 196 fD~Iia 201 (210)
||+|+.
T Consensus 133 fDliFI 138 (219)
T COG4122 133 FDLVFI 138 (219)
T ss_pred ccEEEE
Confidence 888763
No 148
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.22 E-value=8.8e-06 Score=65.65 Aligned_cols=75 Identities=17% Similarity=0.091 Sum_probs=54.1
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC---EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~---~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
++.+|||+|||+|..+..+++... +++++|+ +.+++.++++.. .. .++.+...+..+. .+...+||
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~----~~i~~~~~d~~~~---~~~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP----LNIEFIQADAEAL---PFEDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC----CCceEEecchhcC---CCCCCcEE
Confidence 678999999999999998887643 8999999 899999988875 11 2344444443222 12345799
Q ss_pred EEEEcceee
Q 028335 198 YGNESLLLF 206 (210)
Q Consensus 198 ~Iia~DviY 206 (210)
+|+++.++.
T Consensus 109 ~i~~~~~~~ 117 (223)
T TIGR01934 109 AVTIAFGLR 117 (223)
T ss_pred EEEEeeeeC
Confidence 999876653
No 149
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.19 E-value=6.3e-06 Score=69.33 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=52.2
Q ss_pred CCCEEEEECCccCH----HHHHHHHc-------CCEEEEEeh-HHHHHHHHHHHHH----hccCC---------------
Q 028335 122 HGKKIVELGSGCGL----VGCIAALL-------GAQVILTDL-PDRLRLLKKNIEN----NLRHG--------------- 170 (210)
Q Consensus 122 ~~~~VLELGcGtGl----~~l~la~~-------g~~Vv~tD~-~~~l~~~~~N~~~----n~~~~--------------- 170 (210)
++.+|+|+|||||- +++.++.. +.+|+|+|+ +.||+.+++++-. .+...
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 55555543 247999999 9999999986411 11100
Q ss_pred ---CCCCceEEEEeeCCCCCCCCccCCCCcEEEEcceee
Q 028335 171 ---DLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLLLF 206 (210)
Q Consensus 171 ---~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~DviY 206 (210)
..+.++.+...+..+. .....+||+|+|..|+.
T Consensus 179 v~~~ir~~V~F~~~dl~~~---~~~~~~fD~I~crnvl~ 214 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE---SPPLGDFDLIFCRNVLI 214 (264)
T ss_pred EChHHhCcCEEeeccCCCC---CCccCCCCEEEechhHH
Confidence 0112455555554332 22356899999988753
No 150
>PLN02476 O-methyltransferase
Probab=98.18 E-value=5.6e-06 Score=70.04 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=43.8
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.+.++|||+|+|+|..++.+++. +.+|+.+|. ++.++.+++|++..+..
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~ 169 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS 169 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 47889999999999999999874 447999999 89999999999998875
No 151
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.17 E-value=6.4e-06 Score=72.63 Aligned_cols=74 Identities=15% Similarity=-0.010 Sum_probs=55.3
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.+..+||||||+|...+.+|+.. ..++|+|+ +.++..+.+++..+++. ++.+...+..... ..+.+..+|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-----NV~~i~~DA~~ll-~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-----NLLIINYDARLLL-ELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHhh-hhCCCCceeE
Confidence 45689999999999999999874 57999999 89999999999888764 4666655532221 1234556777
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
|+.
T Consensus 196 I~l 198 (390)
T PRK14121 196 IFV 198 (390)
T ss_pred EEE
Confidence 764
No 152
>PTZ00146 fibrillarin; Provisional
Probab=98.15 E-value=2.2e-05 Score=66.71 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=43.8
Q ss_pred cEEEeccHH-HHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHH
Q 028335 96 GSVMWDSGV-VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 96 G~~~W~aa~-~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~ 161 (210)
-+++|+.-. .||.-+..-++. ..+.++.+|||||||+|..+..++.. + ..|+++|+ +.+++.+..
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~ 175 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVAN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTN 175 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHH
Confidence 499999622 234333222221 12457889999999999999999976 3 37999999 766544433
No 153
>PRK04457 spermidine synthase; Provisional
Probab=98.15 E-value=4e-06 Score=70.50 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+.++|||||||+|.++..+++. +.+|+++|+ +.+++.+++++..+... .++.+..-|..+.... ...+||+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~----~rv~v~~~Da~~~l~~--~~~~yD~ 139 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAEYIAV--HRHSTDV 139 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC----CceEEEECCHHHHHHh--CCCCCCE
Confidence 4678999999999999988865 458999999 99999999997654321 3455544432111111 1357999
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
|+.
T Consensus 140 I~~ 142 (262)
T PRK04457 140 ILV 142 (262)
T ss_pred EEE
Confidence 985
No 154
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=6.5e-06 Score=64.91 Aligned_cols=67 Identities=25% Similarity=0.301 Sum_probs=48.3
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.+.+|..-|......-. ....+-++|||||+|+++-++++. + ..+.+||+ +.+++..++.+..|...
T Consensus 24 DTFlLlDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred hhhHHHHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence 34555555554322110 112567999999999999999875 3 36899999 99999999999999764
No 155
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.12 E-value=1.5e-05 Score=68.21 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=39.8
Q ss_pred CCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 122 HGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
++.+|||||||+|..+..+++. +.+|+++|+ ++||+.+++++....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~ 112 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY 112 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC
Confidence 5679999999999999988866 568999999 899999999987643
No 156
>PLN03075 nicotianamine synthase; Provisional
Probab=98.11 E-value=2e-05 Score=67.13 Aligned_cols=79 Identities=14% Similarity=-0.001 Sum_probs=57.0
Q ss_pred CCCEEEEECCccC-HHHHHHHH-c--CCEEEEEeh-HHHHHHHHHHHHH-hccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 122 HGKKIVELGSGCG-LVGCIAAL-L--GAQVILTDL-PDRLRLLKKNIEN-NLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 122 ~~~~VLELGcGtG-l~~l~la~-~--g~~Vv~tD~-~~~l~~~~~N~~~-n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
..++|+|+|||.| +.++.++. . +.+++++|+ +++++.+++++.. .++. .++.+...+..+... ...+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~----~rV~F~~~Da~~~~~---~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS----KRMFFHTADVMDVTE---SLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc----CCcEEEECchhhccc---ccCC
Confidence 6789999999965 55666653 3 447999999 9999999999965 4443 567777776544211 1357
Q ss_pred CcEEEEcceeee
Q 028335 196 PDYGNESLLLFL 207 (210)
Q Consensus 196 fD~Iia~DviY~ 207 (210)
||+|++.=++|.
T Consensus 196 FDlVF~~ALi~~ 207 (296)
T PLN03075 196 YDVVFLAALVGM 207 (296)
T ss_pred cCEEEEeccccc
Confidence 999999955554
No 157
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.07 E-value=3.3e-05 Score=69.64 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCCEEEEECCccCHHHHHHHHcC------CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g------~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~ 194 (210)
+++.|+|+|||+|.++..+++.+ .+|+|++. +.++..+++.+..|+.. +++++..-+..+.. ...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~----~~V~vi~~d~r~v~----lpe 257 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG----DKVTVIHGDMREVE----LPE 257 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT----TTEEEEES-TTTSC----HSS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC----CeEEEEeCcccCCC----CCC
Confidence 46789999999999999887764 37999999 78887777777788764 56777776654432 223
Q ss_pred CCcEEEE
Q 028335 195 LPDYGNE 201 (210)
Q Consensus 195 ~fD~Iia 201 (210)
++|+||+
T Consensus 258 kvDIIVS 264 (448)
T PF05185_consen 258 KVDIIVS 264 (448)
T ss_dssp -EEEEEE
T ss_pred ceeEEEE
Confidence 7898885
No 158
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=6.2e-07 Score=75.01 Aligned_cols=126 Identities=23% Similarity=0.128 Sum_probs=77.7
Q ss_pred ceEEEEeCCCCCCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHH
Q 028335 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRL 156 (210)
Q Consensus 78 ~~~~i~q~~~~~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l 156 (210)
....+.|+.+.....+.||..+|.+++.|+.++.+..+ ..++.++.++|||+++..+..++...-|...+- ..+.
T Consensus 50 ~~~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~~d----~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~ 125 (262)
T KOG2497|consen 50 GTKVILQSHSLRFLLARTGLSVWESALSLEADLRDKPD----LSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAG 125 (262)
T ss_pred cCeeeecchHHHHHHHHhccccchHHHHHHHHHhhCcc----cccccchHhhccCHHHHHHHHHhcccceecCCccCcHH
Confidence 45667777765566788999999999999999997643 367889999999999988666666555555554 4443
Q ss_pred HHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-ccCCCCcEEEEcceeeec
Q 028335 157 RLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYGNESLLLFLQ 208 (210)
Q Consensus 157 ~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~-~~~~~fD~Iia~DviY~~ 208 (210)
-++..+...+... ..........+.|....... .....+|+|+++||+|+.
T Consensus 126 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd~ 177 (262)
T KOG2497|consen 126 LLLEEIILLSRDL-SLEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYDT 177 (262)
T ss_pred HHHHHHHhccccc-cccccccchhHHHHHHhcCcccccchhhheeccCeeehh
Confidence 3344443333211 11111122222222111110 011238999999999984
No 159
>PRK00811 spermidine synthase; Provisional
Probab=98.06 E-value=1.4e-05 Score=67.93 Aligned_cols=78 Identities=9% Similarity=-0.066 Sum_probs=52.1
Q ss_pred CCCEEEEECCccCHHHHHHHHc-C-CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-g-~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+.++||+||||+|.++..+++. + .+|+++|+ +.+++.+++++...........++.+..-|-...... ...+||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccE
Confidence 5679999999999999988876 4 48999999 9999999998864321100013444444332111111 2458999
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
|+.
T Consensus 154 Ii~ 156 (283)
T PRK00811 154 IIV 156 (283)
T ss_pred EEE
Confidence 996
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.05 E-value=1.3e-05 Score=67.47 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=47.1
Q ss_pred CCCEEEEECCccCHHHHHHHHc-----CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-----g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
+..+|||+|||+|..+..+++. +.+++++|+ +.+++.++++.. ++.+...+..+ ..+.+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----------~~~~~~~d~~~---lp~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----------QVTFCVASSHR---LPFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----------CCeEEEeeccc---CCCcCCc
Confidence 4568999999999999888764 237999999 899998876521 13333333222 2234568
Q ss_pred CcEEEEc
Q 028335 196 PDYGNES 202 (210)
Q Consensus 196 fD~Iia~ 202 (210)
||+|++.
T Consensus 152 fD~I~~~ 158 (272)
T PRK11088 152 LDAIIRI 158 (272)
T ss_pred eeEEEEe
Confidence 9999864
No 161
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.04 E-value=3.1e-05 Score=64.59 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=39.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
.++.+|||+|||+|.++..+++.+.+|+++|. +.+++.++.++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC
Confidence 46789999999999999999999889999999 899999988764
No 162
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=1.7e-05 Score=68.73 Aligned_cols=49 Identities=29% Similarity=0.405 Sum_probs=46.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
..|.+|||+-||.|.+++.+|+.|+. |+++|+ |.+++.+++|+..|+..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~ 237 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE 237 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc
Confidence 46899999999999999999999875 999999 99999999999999886
No 163
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=8.5e-05 Score=61.59 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=44.4
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+.++.+|||-|.|+|.++..+++. | .+|+..|+ .+.++.|++|+..-++.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~ 145 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG 145 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc
Confidence 568999999999999999999974 4 38999999 99999999999987654
No 164
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.95 E-value=7.4e-05 Score=62.25 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=52.1
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC-CCCCCccCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD-DPDQDLIQP 194 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~-~~~~~~~~~ 194 (210)
+.+|++|||-|.|+|.+++.+++. + .+|+..|. ++.++.+++|++.+++. .++.+..-|... .+... .+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~----~~v~~~~~Dv~~~g~~~~-~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD----DNVTVHHRDVCEEGFDEE-LES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC----TTEEEEES-GGCG--STT--TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC----CCceeEecceeccccccc-ccC
Confidence 568999999999999999999975 3 38999999 99999999999999875 456666666532 22111 124
Q ss_pred CCcEEE
Q 028335 195 LPDYGN 200 (210)
Q Consensus 195 ~fD~Ii 200 (210)
.+|.|+
T Consensus 113 ~~Davf 118 (247)
T PF08704_consen 113 DFDAVF 118 (247)
T ss_dssp SEEEEE
T ss_pred cccEEE
Confidence 566654
No 165
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.93 E-value=4.1e-06 Score=68.75 Aligned_cols=76 Identities=18% Similarity=0.080 Sum_probs=50.0
Q ss_pred EEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcc
Q 028335 125 KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESL 203 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~D 203 (210)
.++|+|||+|..++.++..-.+|+|||. +.||+.+++.-...-.... ..+.-.+..+..-...+.|+|+++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~-------~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTP-------STMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCC-------ccccccccccccCCCcceeeehhhh
Confidence 7999999999888888877668999999 8999988775332211100 0011011112111256899999999
Q ss_pred eeee
Q 028335 204 LLFL 207 (210)
Q Consensus 204 viY~ 207 (210)
|+++
T Consensus 109 a~HW 112 (261)
T KOG3010|consen 109 AVHW 112 (261)
T ss_pred hHHh
Confidence 9864
No 166
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.91 E-value=3.2e-05 Score=64.47 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=46.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l 181 (210)
.+.++|||||+++|+-++.+++. +.+|+.+|. ++..+.+++|++..++. .++.+..-
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~----~~I~~~~G 138 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA----HKIDFREG 138 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEec
Confidence 46789999999999999999864 458999999 88999999999988765 34554443
No 167
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.90 E-value=4.2e-05 Score=57.72 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=40.3
Q ss_pred EEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 125 KIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.+||+|||.|..++.+++.+. +|+++|. +.+++.+++|+..|+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 489999999999999998765 6999999 99999999999998753
No 168
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.90 E-value=0.0001 Score=60.64 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=43.6
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
....|.+|+.... .-++.+||..|||.|.-.+.||.+|.+|+++|+ +.+++.+.+
T Consensus 28 pnp~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 28 PNEFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH
Confidence 4556666665421 125679999999999999999999999999999 888877644
No 169
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.89 E-value=9e-05 Score=63.23 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=48.8
Q ss_pred CCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCC-CCCCCC-ccCCCC
Q 028335 123 GKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWG-DDPDQD-LIQPLP 196 (210)
Q Consensus 123 ~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~N~~~n-~~~~~~~~~~~~~~l~w~-~~~~~~-~~~~~f 196 (210)
.-++||+|+|. .+..+..++ .+.+++|||+ +..++.|++|++.| ++. .++.+....-. ..+... ..+..|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~----~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE----SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T----TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc----cceEEEEcCCccccchhhhccccee
Confidence 45899999998 566777665 4889999999 89999999999999 766 56766655422 222211 123578
Q ss_pred cEEEEcceeeec
Q 028335 197 DYGNESLLLFLQ 208 (210)
Q Consensus 197 D~Iia~DviY~~ 208 (210)
|+.+|.--.|..
T Consensus 179 dftmCNPPFy~s 190 (299)
T PF05971_consen 179 DFTMCNPPFYSS 190 (299)
T ss_dssp EEEEE-----SS
T ss_pred eEEecCCccccC
Confidence 888887776654
No 170
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.88 E-value=3.7e-05 Score=62.55 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=36.6
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
+..-|||+|||+|+.|-.+...|...+++|+ +.||+.+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence 4568999999999999999999988999999 999999886
No 171
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.88 E-value=2.1e-05 Score=69.37 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=41.8
Q ss_pred CEEEEECCccCHHHHHHHHc--CC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 124 KKIVELGSGCGLVGCIAALL--GA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~--g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.+|||+.||+|..|+.+++. |+ +|++.|+ +.+++.+++|++.|+..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~ 95 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE 95 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 58999999999999999987 54 7999999 99999999999999754
No 172
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.78 E-value=5e-05 Score=61.69 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=44.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-C--CEEEEEehHHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CCcc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-----QDLI 192 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~-----~~~~ 192 (210)
.++.+|||||||+|..+..+++. + .+|+++|+..+ +.. ..+.+...+..+... ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~~-----~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DPI-----VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cCC-----CCcEEEecCCCChHHHHHHHHHhC
Confidence 46789999999999999988876 3 47999999332 111 135555556544210 0123
Q ss_pred CCCCcEEEEcc
Q 028335 193 QPLPDYGNESL 203 (210)
Q Consensus 193 ~~~fD~Iia~D 203 (210)
..+||+|++.-
T Consensus 115 ~~~~D~V~S~~ 125 (209)
T PRK11188 115 DSKVQVVMSDM 125 (209)
T ss_pred CCCCCEEecCC
Confidence 56899999843
No 173
>PHA01634 hypothetical protein
Probab=97.75 E-value=0.00021 Score=53.36 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=46.5
Q ss_pred ccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 118 MLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 118 ~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
...+++++|+|+|++.|--++.++..|| +|++.+. +...+.+++|+..|.+-
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~ 77 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC 77 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence 3457999999999999999999999999 5999999 88999999999988653
No 174
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.75 E-value=0.00026 Score=59.28 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=56.6
Q ss_pred ccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCC
Q 028335 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLR 173 (210)
Q Consensus 95 tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~ 173 (210)
.|-.+-....++...+... .+.+...|||+|-|||.+...+...|++|+|++. +.++..+++..+....+
T Consensus 36 ~GQHilkNp~v~~~I~~ka-----~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~---- 106 (315)
T KOG0820|consen 36 FGQHILKNPLVIDQIVEKA-----DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKS---- 106 (315)
T ss_pred cchhhhcCHHHHHHHHhcc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcc----
Confidence 3444445555555544432 2457889999999999999999999999999999 99988888876544322
Q ss_pred CceEEEEeeC
Q 028335 174 GSAVVTELTW 183 (210)
Q Consensus 174 ~~~~~~~l~w 183 (210)
+..++...|.
T Consensus 107 ~kLqV~~gD~ 116 (315)
T KOG0820|consen 107 GKLQVLHGDF 116 (315)
T ss_pred ceeeEEeccc
Confidence 3455555443
No 175
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.71 E-value=8.2e-05 Score=59.13 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=29.0
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcC---CEEEEEeh-HH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PD 154 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~ 154 (210)
..++.+|||+|||+|.++..+++.. .+|+++|+ +.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 4578899999999999998887652 37999999 54
No 176
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.68 E-value=9.9e-05 Score=59.54 Aligned_cols=78 Identities=15% Similarity=0.025 Sum_probs=53.6
Q ss_pred EEEEECCccCHHHHHHH-HcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceE-EEEeeCCCCCCCCccCCCCcEEEE
Q 028335 125 KIVELGSGCGLVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV-VTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la-~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~-~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
.|||+|||||..--..- +.+.+|+++|. +.|-+.+.+.+..|... ++. +..-+-++.. .+.+.++|.||+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~ge~l~--~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVADGENLP--QLADGSYDTVVC 151 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeechhcCc--ccccCCeeeEEE
Confidence 58999999995433222 23678999999 89999999999888432 233 2222222222 246789999999
Q ss_pred cceeeecC
Q 028335 202 SLLLFLQA 209 (210)
Q Consensus 202 ~DviY~~~ 209 (210)
+=|+.+..
T Consensus 152 TlvLCSve 159 (252)
T KOG4300|consen 152 TLVLCSVE 159 (252)
T ss_pred EEEEeccC
Confidence 98887643
No 177
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.68 E-value=5.3e-05 Score=60.24 Aligned_cols=48 Identities=27% Similarity=0.449 Sum_probs=42.8
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
....+.|||+|+|++++.+|+...+|++++. +...+.+++|+..++..
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~ 80 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV 80 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc
Confidence 3468999999999999999998778999999 99999999999777754
No 178
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.66 E-value=0.00017 Score=60.85 Aligned_cols=77 Identities=14% Similarity=-0.091 Sum_probs=49.4
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+.++||+||||+|.++..+++.. .+|+++|+ +.+++.+++++....... ...++.+...+.-.... ....+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~-~~~~v~i~~~D~~~~l~--~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY-DDPRVDLQIDDGFKFLA--DTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc-cCCceEEEECchHHHHH--hCCCCccE
Confidence 45699999999999888777664 47999999 899999999875432111 01233333322100000 01358999
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
||.
T Consensus 149 Ii~ 151 (270)
T TIGR00417 149 IIV 151 (270)
T ss_pred EEE
Confidence 986
No 179
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.65 E-value=0.00011 Score=58.32 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=49.6
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC--E---------EEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA--Q---------VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD 188 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~--~---------Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~ 188 (210)
.++..|||--||+|.+.+.++..+. . +++.|+ +.+++.++.|+...+.. ..+.+...+..+..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~----~~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE----DYIDFIQWDARELP- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C----GGEEEEE--GGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC----CceEEEecchhhcc-
Confidence 3677999999999999998887643 2 779999 99999999999887764 34555554433222
Q ss_pred CCccCCCCcEEEE
Q 028335 189 QDLIQPLPDYGNE 201 (210)
Q Consensus 189 ~~~~~~~fD~Iia 201 (210)
+....+|+||+
T Consensus 102 --~~~~~~d~Ivt 112 (179)
T PF01170_consen 102 --LPDGSVDAIVT 112 (179)
T ss_dssp --GTTSBSCEEEE
T ss_pred --cccCCCCEEEE
Confidence 23345676664
No 180
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.63 E-value=0.0004 Score=55.39 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=49.0
Q ss_pred EEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEE
Q 028335 125 KIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
+++|+|+|.|.+|+.+|-. ..+++++|. ..-+..++.-+..-++. ++.+..-..++ .....+||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~----~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-----NVEVINGRAEE----PEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-----SEEEEES-HHH----TTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-----CEEEEEeeecc----cccCCCccEEEe
Confidence 7999999999999999865 347999999 77777777777766664 45555555444 123467899886
No 181
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.63 E-value=0.00027 Score=58.71 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=53.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--------CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--------GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL 191 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--------g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~ 191 (210)
.++.++||++||||-+++.+.+. ..+|+..|+ ++||+..++......+.. ..++....-+ ..+..+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--~~~~~w~~~d---AE~LpF 173 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA--SSRVEWVEGD---AEDLPF 173 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc--CCceEEEeCC---cccCCC
Confidence 46789999999999999988764 147999999 999999999987755541 1223333322 233345
Q ss_pred cCCCCcEEEEc
Q 028335 192 IQPLPDYGNES 202 (210)
Q Consensus 192 ~~~~fD~Iia~ 202 (210)
.+..||....+
T Consensus 174 dd~s~D~yTia 184 (296)
T KOG1540|consen 174 DDDSFDAYTIA 184 (296)
T ss_pred CCCcceeEEEe
Confidence 66678866544
No 182
>PRK03612 spermidine synthase; Provisional
Probab=97.63 E-value=0.0001 Score=67.85 Aligned_cols=79 Identities=19% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCC--CCCceEEEEeeCCCCCCCCccCCCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGD--LRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~--~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
+.++||++|||+|..+..+++.. .+|+++|+ +++++.+++|...+..... ...++++..-|-.+... ....+|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--KLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH--hCCCCC
Confidence 56799999999999998888764 48999999 9999999996432221100 01234444333111111 123589
Q ss_pred cEEEEc
Q 028335 197 DYGNES 202 (210)
Q Consensus 197 D~Iia~ 202 (210)
|+|+..
T Consensus 375 DvIi~D 380 (521)
T PRK03612 375 DVIIVD 380 (521)
T ss_pred CEEEEe
Confidence 999873
No 183
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00045 Score=59.85 Aligned_cols=50 Identities=28% Similarity=0.282 Sum_probs=45.5
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
..+|..|||=-||||-+.+.+...|++++++|+ ..|+.-++.|++.-++.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~ 245 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE 245 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC
Confidence 457889999999999999999999999999999 88999999999887643
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00043 Score=55.98 Aligned_cols=48 Identities=29% Similarity=0.516 Sum_probs=41.4
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-CC---EEEEEeh-HHHHHHHHHHHHHhc
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-GA---QVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g~---~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
+.+|.+.||+|+|+|+++..+++. ++ .++++|. +++++..++|+....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i 132 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDI 132 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhc
Confidence 568999999999999999999864 43 4599999 999999999998754
No 185
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.57 E-value=0.0004 Score=52.79 Aligned_cols=47 Identities=21% Similarity=0.175 Sum_probs=38.8
Q ss_pred cCCCEEEEECCccCHHHHHHHH-----c-CCEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL-----L-GAQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~-----~-g~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
.+...|+|+|||.|.++..++. . +.+|+++|. +..++.+++..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3567999999999999999998 3 568999999 777777777766554
No 186
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.57 E-value=0.00035 Score=56.41 Aligned_cols=78 Identities=15% Similarity=-0.017 Sum_probs=52.7
Q ss_pred EEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-----CccCCCC
Q 028335 125 KIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DLIQPLP 196 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~-----~~~~~~f 196 (210)
+|||||||||--+..+|+. ...-.-+|. +..+..++..+...+..+ ...-..+|....... .....+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N----v~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN----VRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc----cCCCeEeecCCCCCccccccccCCCCc
Confidence 6999999999999999976 346788999 777788888877766541 111223333222111 1134689
Q ss_pred cEEEEcceee
Q 028335 197 DYGNESLLLF 206 (210)
Q Consensus 197 D~Iia~DviY 206 (210)
|.|+++-+++
T Consensus 104 D~i~~~N~lH 113 (204)
T PF06080_consen 104 DAIFCINMLH 113 (204)
T ss_pred ceeeehhHHH
Confidence 9999987765
No 187
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.55 E-value=0.00059 Score=56.24 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=52.4
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEehHHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
+.++|||||+|+|..++.+++. +.+++..|.+.+++.+++ . .++.+...++-+. + |.+|++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~----~rv~~~~gd~f~~----~--P~~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------A----DRVEFVPGDFFDP----L--PVADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------T----TTEEEEES-TTTC----C--SSESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------c----cccccccccHHhh----h--ccccce
Confidence 4568999999999999999876 558999999999888888 1 4677777776421 2 239999
Q ss_pred EEcceeee
Q 028335 200 NESLLLFL 207 (210)
Q Consensus 200 ia~DviY~ 207 (210)
+.+.|+++
T Consensus 163 ~l~~vLh~ 170 (241)
T PF00891_consen 163 LLRHVLHD 170 (241)
T ss_dssp EEESSGGG
T ss_pred eeehhhhh
Confidence 99999876
No 188
>PLN02366 spermidine synthase
Probab=97.44 E-value=0.00062 Score=58.57 Aligned_cols=78 Identities=14% Similarity=-0.092 Sum_probs=51.5
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+.++||+||||.|.+...+++.. .+|+.+|+ +.+++.+++.+....... ...++++..-|-..... ...+.+||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~-~dpRv~vi~~Da~~~l~-~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGF-DDPRVNLHIGDGVEFLK-NAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcccc-CCCceEEEEChHHHHHh-hccCCCCCE
Confidence 56799999999999988888763 47999999 889999999875421111 11345544433111111 112357999
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
||.
T Consensus 169 Ii~ 171 (308)
T PLN02366 169 IIV 171 (308)
T ss_pred EEE
Confidence 986
No 189
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0006 Score=57.07 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=40.2
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
.++.+|||+|+|.|.++..+++.+++|+++++ +.+++.+++...
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc
Confidence 45789999999999999999999999999999 889998888865
No 190
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.41 E-value=0.00043 Score=55.68 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=42.5
Q ss_pred CCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 028335 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~ 182 (210)
...+||||||.|-..+.+|+. ...++|+|+ ...+..+.+.+...++. ++.+...+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-----Nv~~~~~d 75 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-----NVRFLRGD 75 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-----SEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-----ceEEEEcc
Confidence 338999999999999999876 457999999 88888888888877664 45555554
No 191
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.38 E-value=0.00056 Score=55.78 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=37.3
Q ss_pred CCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+++++|+|+|.|.+|+.+|-. ..+|+.+|- ..-+..++.-...-++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~ 117 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE 117 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC
Confidence 689999999999999998844 447999998 66667777766665553
No 192
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.36 E-value=0.00047 Score=65.63 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCEEEEECCccCHHHHHHHHc--------------------------------------------CCEEEEEeh-HHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--------------------------------------------GAQVILTDL-PDRL 156 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--------------------------------------------g~~Vv~tD~-~~~l 156 (210)
++..++|-+||+|.+.+.+|.. ..+++++|+ +.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4678999999999999988752 126899999 9999
Q ss_pred HHHHHHHHHhccCCCCCCceEEEEeeCC
Q 028335 157 RLLKKNIENNLRHGDLRGSAVVTELTWG 184 (210)
Q Consensus 157 ~~~~~N~~~n~~~~~~~~~~~~~~l~w~ 184 (210)
+.+++|+..+++. ..+.+...++.
T Consensus 270 ~~A~~N~~~~g~~----~~i~~~~~D~~ 293 (702)
T PRK11783 270 QAARKNARRAGVA----ELITFEVKDVA 293 (702)
T ss_pred HHHHHHHHHcCCC----cceEEEeCChh
Confidence 9999999999875 34555555543
No 193
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.32 E-value=0.00033 Score=57.81 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=41.3
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-CC-EEEEEeh-HHHHHHHHHHHHHh
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
.+..+.+||+||-+|.+++.+|+. |+ .|+++|+ +..|..|++|++.-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 568889999999999999999975 66 5999999 88999999998643
No 194
>PRK01581 speE spermidine synthase; Validated
Probab=97.31 E-value=0.00054 Score=60.04 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=34.9
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N 162 (210)
..++||+||||+|.....+.+.. .+|+++|+ +.+++.+++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~ 193 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNV 193 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhc
Confidence 56799999999998877777764 48999999 9999999963
No 195
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00035 Score=56.79 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=35.6
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N 162 (210)
.-.+|.|||||+|...-.++++ ++.++++|- ++||+.++..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r 73 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR 73 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh
Confidence 4568999999999999999987 779999999 9999888554
No 196
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.28 E-value=0.00049 Score=61.16 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=41.6
Q ss_pred EEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 125 KIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.|||+|+|||++++.+++.|+ .|++++. ..|.+.+++-...|+..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 589999999999999999988 6999999 89999999999999865
No 197
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.23 E-value=0.0018 Score=54.34 Aligned_cols=55 Identities=25% Similarity=0.412 Sum_probs=44.7
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w 183 (210)
++..|||+|+|+|.++..+++.+.+|+++|. +..++.+++....+ .++.+..-|.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~-------~~~~vi~~D~ 85 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN-------PNVEVINGDF 85 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC-------SSEEEEES-T
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc-------ccceeeecch
Confidence 7889999999999999999999999999999 88889888876522 3455555553
No 198
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.18 E-value=0.0012 Score=56.56 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=38.7
Q ss_pred cCCCEEEEECCccCHHHHHHHH---------cCCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL---------LGAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~---------~g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.++.+|+|-.||+|.+.+.+.+ ...+++|.|+ +.++.+++.|+..++..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3667899999999988777765 2457999999 88999999998877654
No 199
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.17 E-value=0.0017 Score=56.41 Aligned_cols=54 Identities=20% Similarity=0.095 Sum_probs=39.5
Q ss_pred ccHHHHHHHHhhhhh---cCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEehHH
Q 028335 101 DSGVVLGKFLEHAVD---SGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPD 154 (210)
Q Consensus 101 ~aa~~la~~L~~~~~---~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~~~ 154 (210)
.++..|.+.+..... ....+.+++++|||||++|-.+..+.++|++|+++|...
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~ 243 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP 243 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh
Confidence 356666655443211 012346889999999999999999999999999999733
No 200
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.12 E-value=0.0021 Score=50.32 Aligned_cols=70 Identities=21% Similarity=0.406 Sum_probs=53.3
Q ss_pred CCCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC---EEEEEeh-HHHHHHHHHHH
Q 028335 89 LGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 89 ~~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~---~Vv~tD~-~~~l~~~~~N~ 163 (210)
+..+.+.|+.+ ++|-.+|+-+....+ .-.+..|||||.|||.+.-.+..+|. .++++++ ++-...+.+..
T Consensus 20 i~~PrtVGaI~-PsSs~lA~~M~s~I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 20 IDNPRTVGAIL-PSSSILARKMASVID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred hcCCceeeeec-CCcHHHHHHHHhccC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC
Confidence 45566778776 777777777665432 23677999999999999999888764 5999999 88877776654
No 201
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.09 E-value=0.0029 Score=52.87 Aligned_cols=68 Identities=25% Similarity=0.158 Sum_probs=47.2
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYG 199 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~I 199 (210)
.+..++||||+|.|-+...++..-.+|.+|+. +.|...+++ .+.. .....+|.+. +.+||+|
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~~-------vl~~~~w~~~------~~~fDvI 155 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGFT-------VLDIDDWQQT------DFKFDVI 155 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCCe-------EEehhhhhcc------CCceEEE
Confidence 35678999999999999999998889999999 777544433 3322 1223345432 2469999
Q ss_pred EEccee
Q 028335 200 NESLLL 205 (210)
Q Consensus 200 ia~Dvi 205 (210)
.|--++
T Consensus 156 scLNvL 161 (265)
T PF05219_consen 156 SCLNVL 161 (265)
T ss_pred eehhhh
Confidence 886553
No 202
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.07 E-value=0.001 Score=54.88 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=49.2
Q ss_pred EEEEECCccCHHHHHHHHcC----CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCccCCCCcE
Q 028335 125 KIVELGSGCGLVGCIAALLG----AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQDLIQPLPDY 198 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g----~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~-~~~~~~~~fD~ 198 (210)
+|||+|||.|-....+.+-. -+|.+.|. +.++++.++|...+... +.....|..... ........+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~------~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR------VEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh------hcccceeccchhccCCCCcCccce
Confidence 79999999998888877652 47999999 99999999998766422 111122221211 22233457888
Q ss_pred EEEcce
Q 028335 199 GNESLL 204 (210)
Q Consensus 199 Iia~Dv 204 (210)
|++-=|
T Consensus 148 it~IFv 153 (264)
T KOG2361|consen 148 ITLIFV 153 (264)
T ss_pred EEEEEE
Confidence 876543
No 203
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.05 E-value=0.0033 Score=51.03 Aligned_cols=71 Identities=17% Similarity=0.053 Sum_probs=47.6
Q ss_pred EEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEc
Q 028335 126 IVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNES 202 (210)
Q Consensus 126 VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (210)
|.|+||--|.+++.|.+.|. +++++|+ +.-++.+++|+..+++. .++.+...+ .....-.....|.|+-|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~----~~i~~rlgd---GL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE----DRIEVRLGD---GLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T----TTEEEEE-S---GGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc----ccEEEEECC---cccccCCCCCCCEEEEe
Confidence 68999999999999999876 7999999 99999999999998876 345444333 22211111236766655
Q ss_pred c
Q 028335 203 L 203 (210)
Q Consensus 203 D 203 (210)
.
T Consensus 74 G 74 (205)
T PF04816_consen 74 G 74 (205)
T ss_dssp E
T ss_pred c
Confidence 3
No 204
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.01 E-value=0.0014 Score=53.64 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=44.1
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHH
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLL 159 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~ 159 (210)
....|.+|+... ...++.+||..|||.|.-.+.+|.+|.+|+++|+ +.+++.+
T Consensus 22 ~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 22 PNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQA 75 (218)
T ss_dssp STHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHH
T ss_pred CCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 367788887762 1235679999999999999999999999999999 8888776
No 205
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.99 E-value=0.0014 Score=55.99 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=38.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC---CEEEEEeh-HHHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
.++..+||.+||.|-.+..+++.. .+|+++|. +++++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 367799999999999999998763 58999999 9999999988743
No 206
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.91 E-value=0.0067 Score=55.16 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=41.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.++.+|||++||.|.=+..++.+ + ..|++.|+ +..++.+++|++..++.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~ 164 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS 164 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 37889999999999888887764 2 37999999 89999999999987764
No 207
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.89 E-value=0.0032 Score=57.93 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCCEEEEECCccCHHHHHHHHcC----------CEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG----------AQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g----------~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
...+|||.|||+|.+.+.++... .++++.|+ +.++..++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 45689999999998888877531 36899999 899999999987654
No 208
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.79 E-value=0.0022 Score=46.42 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=35.9
Q ss_pred HHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh
Q 028335 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL 152 (210)
Q Consensus 104 ~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~ 152 (210)
+..|.||...........+....+|||||.|++--.|.+.|.+-.++|.
T Consensus 40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 3456677654332211224557999999999999999999999999997
No 209
>PLN02823 spermine synthase
Probab=96.71 E-value=0.0044 Score=53.97 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=50.5
Q ss_pred CCCEEEEECCccCHHHHHHHHc-C-CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-g-~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
..++||.||+|.|..+..+.+. + .+|+++|+ +.+++.+++++..+..... ..++.+..-|--.... ....+||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~-dprv~v~~~Da~~~L~--~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC-DKRLELIINDARAELE--KRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc-CCceEEEEChhHHHHh--hCCCCccE
Confidence 4579999999999988877775 3 47999999 9999999999765432110 1334443322101111 12357999
Q ss_pred EEE
Q 028335 199 GNE 201 (210)
Q Consensus 199 Iia 201 (210)
|+.
T Consensus 180 Ii~ 182 (336)
T PLN02823 180 IIG 182 (336)
T ss_pred EEe
Confidence 995
No 210
>PRK10742 putative methyltransferase; Provisional
Probab=96.59 E-value=0.0071 Score=50.34 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=41.1
Q ss_pred CCC--EEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHh
Q 028335 122 HGK--KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 122 ~~~--~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
++. +|||+-+|+|..|+.++.+|++|+++|. +.+..++++|++.-
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh
Confidence 444 8999999999999999999999999999 88999999999873
No 211
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.039 Score=48.68 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC-----------------------------------------EEEEEeh-HHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA-----------------------------------------QVILTDL-PDRLRLL 159 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~-----------------------------------------~Vv~tD~-~~~l~~~ 159 (210)
++..++|-=||+|.+.+.+|..+. .+++.|+ +.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 556899999999999999988764 2779999 9999999
Q ss_pred HHHHHHhccCCCCCCceEEEEeeCC
Q 028335 160 KKNIENNLRHGDLRGSAVVTELTWG 184 (210)
Q Consensus 160 ~~N~~~n~~~~~~~~~~~~~~l~w~ 184 (210)
+.|++.-++. ..+.+...+..
T Consensus 271 k~NA~~AGv~----d~I~f~~~d~~ 291 (381)
T COG0116 271 KANARAAGVG----DLIEFKQADAT 291 (381)
T ss_pred HHHHHhcCCC----ceEEEEEcchh
Confidence 9999999876 55677766643
No 212
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.47 E-value=0.015 Score=49.23 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=33.8
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
.+..++|||+|||+|....++... + .+++++|. +.++++++.-+.
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 467789999999999765555432 2 36999999 889888777544
No 213
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.038 Score=48.50 Aligned_cols=49 Identities=29% Similarity=0.395 Sum_probs=41.3
Q ss_pred cCCCEEEEECCccCHHHHHHHHc----CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~----g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.++.+|||++++.|-=+..++.+ |..|++.|. +.-++.+++|+..-+..
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~ 208 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR 208 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 47899999999998777666655 345799999 88999999999998875
No 214
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.28 E-value=0.0087 Score=52.06 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=39.0
Q ss_pred eccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcC-CEEEEEeh-HHHHHHHHHHHH
Q 028335 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 100 W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g-~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
|--+.+...|+.... ...++.+|||||||-|.--.-..+.+ .+++++|+ ...|+.+++...
T Consensus 44 wvKs~LI~~~~~~~~----~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~ 106 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVK----QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYK 106 (331)
T ss_dssp HHHHHHHHHHCHCCC----CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh----ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHH
Confidence 445555555544211 11167899999999865444444444 47999999 889999988873
No 215
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.27 E-value=0.01 Score=48.84 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=37.4
Q ss_pred CEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhcc
Q 028335 124 KKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLR 168 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~ 168 (210)
..+||||||.|-.-+.+|+... .++|+|+ ...+..+.+.+...++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l 97 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC
Confidence 4799999999999999998865 5999999 7777777777766655
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.22 E-value=0.0018 Score=53.26 Aligned_cols=74 Identities=23% Similarity=0.229 Sum_probs=53.8
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--CCccCCCCc
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--QDLIQPLPD 197 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~--~~~~~~~fD 197 (210)
++.+|||-+.|-|..++.++++|+ +|+-++. +.+|++++-|--..++.. .. ..+-.|+..+ ..+.+.+||
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~---~~---i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE---IA---IKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccc---cc---cEEecccHHHHHhcCCccccc
Confidence 688999999999999999999999 8999999 999999988865444431 11 2233333322 234567788
Q ss_pred EEEE
Q 028335 198 YGNE 201 (210)
Q Consensus 198 ~Iia 201 (210)
.||-
T Consensus 208 aIiH 211 (287)
T COG2521 208 AIIH 211 (287)
T ss_pred eEee
Confidence 8873
No 217
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.13 E-value=0.014 Score=49.28 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=35.3
Q ss_pred EEEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHH
Q 028335 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~ 164 (210)
+|+||.||.|.+++.+.+.|.+ |.++|. +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 6999999999998888888886 789999 899988888864
No 218
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.13 E-value=0.0059 Score=54.19 Aligned_cols=72 Identities=29% Similarity=0.358 Sum_probs=56.0
Q ss_pred CcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 93 GVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 93 g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
...|-+-|.+-+..-+--. .+ ....|..|.|+.||.|..++.+++.+.+|++-|. +++++.++.|+..|.+.
T Consensus 225 ~DfskVYWnsRL~~Eherl----sg-~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 225 FDFSKVYWNSRLSHEHERL----SG-LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred EecceEEeeccchhHHHHH----hh-ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc
Confidence 4457788995443221111 11 2346778999999999999999999999999999 99999999999999875
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.08 E-value=0.024 Score=46.52 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=41.7
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.+..+++||||.=||.-++..|.. +.+|+++|+ .+..+...+-.+..+..
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~ 124 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD 124 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc
Confidence 458899999999999988888865 669999999 88888887777776654
No 220
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.95 E-value=0.024 Score=46.18 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=43.5
Q ss_pred CCCCcccEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-CC---EEEEEeh-HHHHHHHHHHHH
Q 028335 90 GTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GA---QVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 90 ~~~g~tG~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g~---~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+.+|+.++.+=-++.++.+.|..... -..-++.|=+||.|.+--.+..+ +. +|+++|+ +++|+++++|+.
T Consensus 24 sApG~p~FPVRLAsEi~qR~l~~l~~-----~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 24 SAPGFPAFPVRLASEIFQRALHYLEG-----KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -BTTB----HHHHHHHHHHHHCTSSS------S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cCCCCCCccHHHHHHHHHHHHHhhcC-----CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 45677777665556655555543110 12238999999999666555543 22 6999999 899999999976
Q ss_pred H
Q 028335 165 N 165 (210)
Q Consensus 165 ~ 165 (210)
.
T Consensus 99 L 99 (246)
T PF11599_consen 99 L 99 (246)
T ss_dssp C
T ss_pred h
Confidence 4
No 221
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.92 E-value=0.081 Score=43.24 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.+.++.|+||=-|++++.+.+.+. .+++.|+ +..+..+.+|+..|++. .++.+...+ .....-.+..+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~----~~i~vr~~d---gl~~l~~~d~~d~ 88 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS----ERIDVRLGD---GLAVLELEDEIDV 88 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc----ceEEEeccC---CccccCccCCcCE
Confidence 455699999999999999998754 6999999 89999999999999876 455555544 2222223446777
Q ss_pred EEEcc
Q 028335 199 GNESL 203 (210)
Q Consensus 199 Iia~D 203 (210)
|+-+.
T Consensus 89 ivIAG 93 (226)
T COG2384 89 IVIAG 93 (226)
T ss_pred EEEeC
Confidence 76543
No 222
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.03 Score=46.25 Aligned_cols=48 Identities=31% Similarity=0.399 Sum_probs=40.5
Q ss_pred ccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh
Q 028335 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 101 ~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~ 152 (210)
.++..|...|... ...++++.|||+|+-||-++-.+.+.|| +|+++|.
T Consensus 62 RG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDV 110 (245)
T COG1189 62 RGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDV 110 (245)
T ss_pred cHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEc
Confidence 5678888887753 2356899999999999999999999988 6999998
No 223
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.70 E-value=0.016 Score=47.42 Aligned_cols=61 Identities=23% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD 186 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~ 186 (210)
....|+|--||.|--.+..+..++.|+++|+ +.-|..+++|++.-|+. +++.+.+-||-+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHH
Confidence 5567999999999999999999999999999 88899999999999887 5788888777654
No 224
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.59 E-value=0.16 Score=43.39 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCEEEEECCccCHHHHHHHHc-C---CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 123 GKKIVELGSGCGLVGCIAALL-G---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~-g---~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
.-+|||+.||.|..-+-+... . .+|...|+ +..++..++-++.+++. +.+++...+-.+.....-..|.++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCCC
Confidence 348999999999765544432 2 37999999 88999999999999987 345666666444333333467789
Q ss_pred EEEEcce
Q 028335 198 YGNESLL 204 (210)
Q Consensus 198 ~Iia~Dv 204 (210)
++|.|.+
T Consensus 212 l~iVsGL 218 (311)
T PF12147_consen 212 LAIVSGL 218 (311)
T ss_pred EEEEecc
Confidence 9998876
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.54 E-value=0.048 Score=44.21 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=29.7
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc-CC-EEEEEeh-HHHHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+-++...+|||||.|-+-+.+|.. +. +.+|+++ +...+.++.+.+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHH
Confidence 346789999999999887777644 55 5999999 877666665543
No 226
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.46 E-value=0.052 Score=43.47 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 103 a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
-+.|.+.|.... ..++..|||.-||+|..++++.++|.+.+++|+ ++..+.+++
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 344555544332 237889999999999999999999999999999 888888764
No 227
>PRK00536 speE spermidine synthase; Provisional
Probab=95.25 E-value=0.078 Score=44.64 Aligned_cols=79 Identities=9% Similarity=-0.210 Sum_probs=52.9
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEE
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGN 200 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Ii 200 (210)
..++||=+|.|-|...-.+.|...+|+.+|+ +.+++.+|+-+-....... ..++.+.. |-. + .....||+||
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~-DpRv~l~~--~~~--~--~~~~~fDVII 144 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKN-NKNFTHAK--QLL--D--LDIKKYDLII 144 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhc-CCCEEEee--hhh--h--ccCCcCCEEE
Confidence 5689999999999999999887669999999 8999999995433211110 12343332 211 1 0125799999
Q ss_pred Ecceeeec
Q 028335 201 ESLLLFLQ 208 (210)
Q Consensus 201 a~DviY~~ 208 (210)
.|..|.+
T Consensus 145 -vDs~~~~ 151 (262)
T PRK00536 145 -CLQEPDI 151 (262)
T ss_pred -EcCCCCh
Confidence 5655543
No 228
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.16 E-value=0.24 Score=41.83 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=46.2
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcC---CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~ 182 (210)
..+|.+|||-|+|+|.++.++++.- .++.-.|. ....+.+++-++..+.. .++.+..-|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~----~~vt~~hrD 165 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG----DNVTVTHRD 165 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC----cceEEEEee
Confidence 4589999999999999999999873 37999999 77777788888877754 445544444
No 229
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.04 E-value=0.055 Score=49.75 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=35.6
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhcc
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLR 168 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~ 168 (210)
.+..+||||||.|-..+.+|+... .++|+|+ ...+..+.+.+...++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l 396 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI 396 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC
Confidence 456899999999999999988754 6999999 6665555555555444
No 230
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.02 E-value=0.045 Score=47.21 Aligned_cols=42 Identities=45% Similarity=0.722 Sum_probs=37.1
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
...+.+||=+|||. |++.+..|+. |+ +|+.+|. +..|+.+|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34688999999998 9999999975 76 7999999 899999988
No 231
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.85 E-value=0.28 Score=41.49 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=29.3
Q ss_pred CCEEEEECCccC--HHHHH--HHHcC-------CEEEEEeh-HHHHHHHHHH
Q 028335 123 GKKIVELGSGCG--LVGCI--AALLG-------AQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 123 ~~~VLELGcGtG--l~~l~--la~~g-------~~Vv~tD~-~~~l~~~~~N 162 (210)
.-+|+-.||+|| ..+++ +.... .+|+|||+ ..+|+.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 458999999999 44444 43322 27999999 8899888753
No 232
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.85 E-value=0.3 Score=40.54 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=57.1
Q ss_pred cEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccCCCC
Q 028335 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (210)
Q Consensus 96 G~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (210)
|..++++++.=+.|+.++ ..+.|++||=+|=. =+.|++++.. ..+|+.+|+ +.+++.+++.++..++.
T Consensus 23 ~~~T~eT~~~Ra~~~~~~-----gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--- 93 (243)
T PF01861_consen 23 GYATPETTLRRAALMAER-----GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--- 93 (243)
T ss_dssp --B-HHHHHHHHHHHHHT-----T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----
T ss_pred ccccHHHHHHHHHHHHhc-----CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---
Confidence 556678888888888874 24789999999844 4677777654 458999999 88999999999998864
Q ss_pred CCceEEEEeeCCCCCCCCccCCCCcEEEE
Q 028335 173 RGSAVVTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 173 ~~~~~~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
+.+...|.-+..+..+ ...||+++.
T Consensus 94 ---i~~~~~DlR~~LP~~~-~~~fD~f~T 118 (243)
T PF01861_consen 94 ---IEAVHYDLRDPLPEEL-RGKFDVFFT 118 (243)
T ss_dssp ---EEEE---TTS---TTT-SS-BSEEEE
T ss_pred ---eEEEEecccccCCHHH-hcCCCEEEe
Confidence 6667777655544332 357887653
No 233
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.80 E-value=0.045 Score=48.47 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=40.3
Q ss_pred CCEEEEECCccCHHHHHHHHc--C-CEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 123 GKKIVELGSGCGLVGCIAALL--G-AQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~--g-~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.-+|||-=||||+=|+..++. + .+|++-|+ +++++++++|++.|++.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~ 100 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE 100 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc
Confidence 458999999999999999987 3 37999999 99999999999999987
No 234
>PRK11524 putative methyltransferase; Provisional
Probab=94.75 E-value=0.12 Score=43.83 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=40.9
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
.+|..|||--||+|..++++.++|-+.+++|+ ++.++.+++.+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999 8888888888753
No 235
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.68 E-value=0.036 Score=43.48 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=34.6
Q ss_pred cHHHHHHHHhhhhhcCcccc--CCCEEEEECCccCHHHHHHHHcC---CEEEEEeh-HH
Q 028335 102 SGVVLGKFLEHAVDSGMLLL--HGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PD 154 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~--~~~~VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~ 154 (210)
++..|.+-+... ..+. ++.+||||||++|-.+-.+.+++ .+|+++|+ +.
T Consensus 5 a~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 5 AAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 455666655542 1112 34799999999999999999887 58999999 44
No 236
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.58 E-value=0.036 Score=47.30 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=42.4
Q ss_pred CCCEEEEECCccCHHHH-HHHHcCCE-EEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGC-IAALLGAQ-VILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l-~la~~g~~-Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.+..|+||=+|.|++.+ .+.+.||+ |++.|. |.+++.+++|++.|+..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 45689999999999999 67788885 999999 99999999999999754
No 237
>PRK13699 putative methylase; Provisional
Probab=94.17 E-value=0.23 Score=40.80 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=40.4
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHh
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
.+|..|||--||+|..++++.+.|.+.+++|+ ++..+.+++.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999 88888887777554
No 238
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.12 E-value=0.29 Score=40.79 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=35.8
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
...+|+|||||.=-+++..... ++.+++.|+ ..+++.+..-+..-+..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP 155 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 3679999999988888876665 458999999 88999998887766543
No 239
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.03 E-value=0.1 Score=45.16 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=34.8
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++..+++||||-|--.+-.-+.|. +++++|+ .-.++.+++..+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrd 162 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRD 162 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHH
Confidence 677899999999866666666666 6999999 5669988887653
No 240
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.99 E-value=0.077 Score=43.31 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=33.5
Q ss_pred CCCEEEEECCccCHHHHHH-HHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIA-ALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~l-a~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
...+.||.|||.|.++--+ .+...+|-.+|. +..++.+++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc
Confidence 4568999999999999765 455568999999 8999999876554
No 241
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.93 E-value=0.059 Score=46.88 Aligned_cols=76 Identities=21% Similarity=0.053 Sum_probs=50.1
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHH-------HHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCcc
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLR-------LLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI 192 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~-------~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~ 192 (210)
.+|+-|.|=-.|||.+-+.+|+.|+.|+++|+ -.++. .++.|++.-+.. ..-+.+...|..+. ...+
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn~--~~rs 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSNP--PLRS 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccCc--chhh
Confidence 47889999999999999999999999999999 45554 344455444432 11233334443322 2224
Q ss_pred CCCCcEEEE
Q 028335 193 QPLPDYGNE 201 (210)
Q Consensus 193 ~~~fD~Iia 201 (210)
|-.||.|||
T Consensus 282 n~~fDaIvc 290 (421)
T KOG2671|consen 282 NLKFDAIVC 290 (421)
T ss_pred cceeeEEEe
Confidence 567888876
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.75 E-value=0.7 Score=32.81 Aligned_cols=36 Identities=36% Similarity=0.660 Sum_probs=26.5
Q ss_pred EEEECCccCHHHHHHHHcC---CEEEEEeh-HHHHHHHHHH
Q 028335 126 IVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 126 VLELGcGtGl~~l~la~~g---~~Vv~tD~-~~~l~~~~~N 162 (210)
++|+|||+|... .++... ..++++|. +.++...+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARAR 91 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhh
Confidence 999999999876 444433 47899999 7777774443
No 243
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.66 E-value=0.1 Score=43.46 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=37.8
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHh
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
+.++||=||-|.|...-.+.+.. .+|+++|+ +.+++.+++-+...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~ 123 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEF 123 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhh
Confidence 67899999999998888888764 48999999 89999999977654
No 244
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.65 E-value=0.21 Score=41.29 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.0
Q ss_pred CCCEEEEECCccCHH-HHH-HHHcCCEEEEEeh-HHHHHHHHHHHHHh-ccC
Q 028335 122 HGKKIVELGSGCGLV-GCI-AALLGAQVILTDL-PDRLRLLKKNIENN-LRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~-~l~-la~~g~~Vv~tD~-~~~l~~~~~N~~~n-~~~ 169 (210)
++-++||+|.|.-++ .+. ...+|.+.+++|+ +..+..++.++..| ++.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~ 129 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE 129 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh
Confidence 455889998886422 111 1224779999999 89999999999999 443
No 245
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=93.65 E-value=0.1 Score=44.48 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=29.4
Q ss_pred CEEEEECCccC--HHHHH--HHHc------CCEEEEEeh-HHHHHHHHHH
Q 028335 124 KKIVELGSGCG--LVGCI--AALL------GAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 124 ~~VLELGcGtG--l~~l~--la~~------g~~Vv~tD~-~~~l~~~~~N 162 (210)
-+|+-.||.|| ..+++ +... ..+|+|||+ +.+|+.|++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 59999999999 34444 3332 136999999 8999998875
No 246
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=93.53 E-value=0.24 Score=42.15 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=37.6
Q ss_pred CEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHHh
Q 028335 124 KKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
++||-||-|.|...-.+.+.. .+++++|+ +.+++.+++-+..-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~ 123 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEP 123 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCc
Confidence 699999999999999998875 48999999 99999999876543
No 247
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.13 E-value=0.15 Score=46.36 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=30.7
Q ss_pred EEeccHHHHHHHHhhhhhcCccccCC---CEEEEECCccCHHHHHHHHcCCEEEEE
Q 028335 98 VMWDSGVVLGKFLEHAVDSGMLLLHG---KKIVELGSGCGLVGCIAALLGAQVILT 150 (210)
Q Consensus 98 ~~W~aa~~la~~L~~~~~~~~~~~~~---~~VLELGcGtGl~~l~la~~g~~Vv~t 150 (210)
.....+....+.|.+-+.. ...+ +.+||+|||+|.+|..+..++-.++.+
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~---~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~ 145 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPL---IKWGGGIRTALDVGCGVASFGAYLLERNVTTMSF 145 (506)
T ss_pred cccCCHHHHHHHHHHHhhc---cccCCceEEEEeccceeehhHHHHhhCCceEEEc
Confidence 3444555544455443221 1122 379999999999999998887654333
No 248
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.92 E-value=0.25 Score=41.85 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=35.3
Q ss_pred EEEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHH
Q 028335 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~ 164 (210)
+++||-||.|.+++.+.+.|.+ |.++|+ +.+.+..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 6999999999999999999975 899999 899999999876
No 249
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=92.77 E-value=0.11 Score=43.08 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=33.3
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N 162 (210)
....++|||||-|.+.-.+...+. +++.+|- -.|++.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc
Confidence 456899999999999888877765 6999999 7887766543
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.72 E-value=0.8 Score=38.91 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=50.2
Q ss_pred EEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 97 ~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
..+++.+-.+...+.. ..++.+|||++|+.|.=+..++.+ ...|++.|+ ...+..++.|++..+..
T Consensus 67 ~~vQd~sS~l~~~~L~-------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 67 FYVQDESSQLVALALD-------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF 136 (283)
T ss_dssp EEEHHHHHHHHHHHHT-------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S
T ss_pred EEeccccccccccccc-------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 4566666555555543 247889999999999888777765 248999999 89999999999987764
No 251
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.28 E-value=0.31 Score=42.25 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCCEEEEECCccCHHHHHHH-H---c--CCEEEEEeh-HHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAA-L---L--GAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la-~---~--g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++..++|||||.|.=.-.+. . . ...++++|+ .++|+.+..++.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 56689999999986433322 2 2 347999999 889988888887
No 252
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.97 E-value=0.3 Score=42.87 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=40.9
Q ss_pred CCEEEEECCccCHHHHHHHHc-CC-EEEEEeh-HHHHHHHHHHHHHh
Q 028335 123 GKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
..+|+|-=||||+=|+..+.. +. +|++-|+ +++++++++|+..|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc
Confidence 779999999999999999976 44 7999999 99999999999999
No 253
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.62 E-value=0.39 Score=41.94 Aligned_cols=41 Identities=44% Similarity=0.649 Sum_probs=34.6
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
.++.+|+=+|||. |++++.+++. |+ +|+++|. ++-++++++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 3445899999998 9999888875 65 7999999 888998887
No 254
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=91.57 E-value=0.55 Score=38.53 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=53.5
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
.+|.+||++|-|.|++.-.+-.... +-+.++. +++++.++++.-... .++....-.|++..+. +.+..||=
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek------~nViil~g~WeDvl~~-L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK------ENVIILEGRWEDVLNT-LPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc------cceEEEecchHhhhcc-ccccCcce
Confidence 4899999999999998877766544 4667788 999999988854332 4566777788776543 35566876
Q ss_pred EE
Q 028335 199 GN 200 (210)
Q Consensus 199 Ii 200 (210)
|.
T Consensus 173 I~ 174 (271)
T KOG1709|consen 173 IY 174 (271)
T ss_pred eE
Confidence 64
No 255
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.47 E-value=0.72 Score=40.76 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=37.3
Q ss_pred CCCEEEEECCccCHHHHHHHHcC--CEEEEEeh-HHHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g--~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
.-.+||=||.|-|+..-.+.+.- .+++.+|. |.|++.+++|...
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 34589999999999888888763 48999999 9999999988644
No 256
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.44 E-value=0.26 Score=40.02 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=34.7
Q ss_pred CCEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHh
Q 028335 123 GKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
.-.+.|||||.|-+-+.++.+-. -+++.++ ..+-+..++.|+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 34689999999988888887755 4888888 67778888877654
No 257
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.37 E-value=0.57 Score=35.02 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=29.4
Q ss_pred HHHHHHhhhhhcCccccCCCEEEEECCcc-CHHHHHHHHcCCEEEEEeh-HH
Q 028335 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLVGCIAALLGAQVILTDL-PD 154 (210)
Q Consensus 105 ~la~~L~~~~~~~~~~~~~~~VLELGcGt-Gl~~l~la~~g~~Vv~tD~-~~ 154 (210)
-+++|+.+. .+..+|+|+|-|. --++..+...|..|++||+ +.
T Consensus 3 ~~a~~ia~~-------~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARL-------NNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHH-------S-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHh-------CCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 467788753 2455999999997 5677778888999999999 55
No 258
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.94 E-value=0.47 Score=43.73 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=35.2
Q ss_pred cCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
.++.+|+=+|||. |+.++..++ +|++|+++|. ++.++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4788999999998 999988886 4999999999 888777665
No 259
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=90.42 E-value=0.54 Score=37.80 Aligned_cols=80 Identities=20% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCEEEEECCccC--HHHHH--HHHc-----C--CEEEEEeh-HHHHHHHHHHH-HHhccC--------------C-----
Q 028335 123 GKKIVELGSGCG--LVGCI--AALL-----G--AQVILTDL-PDRLRLLKKNI-ENNLRH--------------G----- 170 (210)
Q Consensus 123 ~~~VLELGcGtG--l~~l~--la~~-----g--~~Vv~tD~-~~~l~~~~~N~-~~n~~~--------------~----- 170 (210)
.-+|+-.||+|| ..+++ +... + .+|+|||+ +.+|+.|++-+ ..+.+. .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 348999999999 34443 3331 2 27999999 88999887632 011000 0
Q ss_pred ---CCCCceEEEEeeCCCCCCCCccCCCCcEEEEccee
Q 028335 171 ---DLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLLL 205 (210)
Q Consensus 171 ---~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~Dvi 205 (210)
..+..+.+..++.-+. .....+||+|+|-.|+
T Consensus 112 v~~~lr~~V~F~~~NL~~~---~~~~~~fD~I~CRNVl 146 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP---DPPFGRFDLIFCRNVL 146 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S---------EEEEEE-SSG
T ss_pred EChHHcCceEEEecccCCC---CcccCCccEEEecCEE
Confidence 0135577777775551 1134689999998875
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.40 E-value=1.1 Score=37.20 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=27.4
Q ss_pred EEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHH
Q 028335 125 KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N 162 (210)
+|||.-+|-|.=++.+|..|++|++++. +-+..+++.-
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dG 116 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDG 116 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHH
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHH
Confidence 8999999999999999999999999999 6554444443
No 261
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=89.96 E-value=1.3 Score=37.66 Aligned_cols=75 Identities=19% Similarity=0.096 Sum_probs=40.0
Q ss_pred CEEEEECCcc-CHHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHH-HhccCCCCCCceEEEEeeCCCCCCCCccCCCCc
Q 028335 124 KKIVELGSGC-GLVGCIAALL---GAQVILTDL-PDRLRLLKKNIE-NNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (210)
Q Consensus 124 ~~VLELGcGt-Gl~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~-~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD 197 (210)
++|+=||||. -+-++.+++. +..|+++|+ +++++.+++-+. ..++. ..+.+...+-.+.. ..-..||
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~----~~m~f~~~d~~~~~---~dl~~~D 194 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS----KRMSFITADVLDVT---YDLKEYD 194 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG----GG----S
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc----CCeEEEecchhccc---cccccCC
Confidence 5999999997 7888888864 457999999 999999988777 34443 45666655532211 1124788
Q ss_pred EEEEccee
Q 028335 198 YGNESLLL 205 (210)
Q Consensus 198 ~Iia~Dvi 205 (210)
+|+-+=.+
T Consensus 195 vV~lAalV 202 (276)
T PF03059_consen 195 VVFLAALV 202 (276)
T ss_dssp EEEE-TT-
T ss_pred EEEEhhhc
Confidence 77765443
No 262
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.72 E-value=0.65 Score=38.54 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=34.2
Q ss_pred HHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc----------CCEEEEEeh-HHHHHHHHHHHH
Q 028335 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL----------GAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 106 la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~----------g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+|.|+.............-+|+|+|+|+|.++.-+.+. ..+++.+|. +.+.+.-++++.
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 45666554332111112358999999999988876652 237999999 666555555543
No 263
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.71 E-value=0.98 Score=38.10 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=48.7
Q ss_pred cHHHHHHHHhhhhhc-CccccCCCEEEEECCccCHHHHHHHHcCCEEEEEehHHHHHHHHHHHHHhc
Q 028335 102 SGVVLGKFLEHAVDS-GMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNL 167 (210)
Q Consensus 102 aa~~la~~L~~~~~~-~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~~~~l~~~~~N~~~n~ 167 (210)
+-..|-.|+...... .....+++.+.||-+|||++|-.+-+.|..|++-|+..---++.+|.-.|.
T Consensus 6 sK~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysylln~~yi~N~ 72 (330)
T COG3392 6 SKYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSYLLNQNYIGNI 72 (330)
T ss_pred hHHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHHHHHHHHHHhhcc
Confidence 345677787765432 234567889999999999999999999999999999655455566555443
No 264
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.50 E-value=1.3 Score=39.34 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=27.3
Q ss_pred CCCEEEEECCccCHHHHHHH-HcCCEEEEEeh
Q 028335 122 HGKKIVELGSGCGLVGCIAA-LLGAQVILTDL 152 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la-~~g~~Vv~tD~ 152 (210)
.-+.|+|+|+|.|.++-+++ +.|..|.++|.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIeg 184 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEG 184 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEecc
Confidence 45689999999999999988 45889999998
No 265
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.14 E-value=1.2 Score=35.23 Aligned_cols=41 Identities=34% Similarity=0.531 Sum_probs=29.4
Q ss_pred EEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 125 ~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
+|-=+|+|+ | .++..++..|.+|+..|. ++.++.+++.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 356689987 5 566667778999999999 8888777766654
No 266
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=89.08 E-value=1.9 Score=37.20 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=38.5
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
.++..++|--+|.|--+..+++. ..+|+++|. +.++..+++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 36779999999999999988865 368999999 9999999988754
No 267
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.61 E-value=0.84 Score=39.34 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=33.8
Q ss_pred EEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHH
Q 028335 126 IVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 126 VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~ 164 (210)
|+||.||.|.+++.+.+.|.+ +.+.|. +.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 689999999999999888987 567999 888888888863
No 268
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=88.38 E-value=7.6 Score=31.98 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=37.6
Q ss_pred ccEEEeccH-HHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHH
Q 028335 95 TGSVMWDSG-VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLR 157 (210)
Q Consensus 95 tG~~~W~aa-~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~ 157 (210)
.++++|+.- -.||..+....+ ...+.+|.+||=||+.+|..--.++.. | ..|.+++. +...+
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r 112 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR 112 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH
T ss_pred cceeecCchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH
Confidence 489999862 234444433221 123557889999999999776666654 3 37999999 75543
No 269
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=88.00 E-value=0.11 Score=42.32 Aligned_cols=40 Identities=28% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
...++||||+|-|-++..++..--+|.+|+. ..|.+.+++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 4579999999999999988876667888888 667665554
No 270
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=1 Score=34.79 Aligned_cols=48 Identities=25% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+..+.+|||+|-|.+-+.+++.|. ..+++++ +-.+.+.+-..-..+..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA 121 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc
Confidence 345799999999999999999985 6899999 77777777776665543
No 271
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=87.27 E-value=1.2 Score=36.73 Aligned_cols=51 Identities=29% Similarity=0.352 Sum_probs=33.7
Q ss_pred HHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHH
Q 028335 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 106 la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~ 160 (210)
|+.++.+..+. . +..+++|+-||+|.+++.+...+.+|+.-|+ +.++...+
T Consensus 8 l~~~I~~~ip~---~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELIPK---N-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCC---C-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 55666664321 1 5779999999999999888777889999999 66554444
No 272
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.92 E-value=1.1 Score=36.40 Aligned_cols=47 Identities=28% Similarity=0.342 Sum_probs=33.5
Q ss_pred cHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-CC--EEEEEeh
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GA--QVILTDL 152 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g~--~Vv~tD~ 152 (210)
++..|-+...+. ..+.++.+|+||||-.|--+..+++. +. +|+++|+
T Consensus 29 Aa~KL~el~~k~----~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi 78 (205)
T COG0293 29 AAYKLLELNEKF----KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDI 78 (205)
T ss_pred HHHHHHHHHHhc----CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEEC
Confidence 444444444332 23346789999999999999998876 43 4999999
No 273
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.79 E-value=1.6 Score=37.76 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=37.1
Q ss_pred CCEEEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHHHH
Q 028335 123 GKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~~~ 165 (210)
..+++||-||.|.+.+-+...|.+ +.+.|+ +.++...+.|...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC
Confidence 457999999999999999888987 789999 8998888888653
No 274
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=86.43 E-value=1.2 Score=36.32 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=46.4
Q ss_pred ccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEE
Q 028335 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (210)
Q Consensus 101 ~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~ 178 (210)
+++..+.+||.............-++||+||=+....+ +..+. +|+.+|+ +.- ..+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~~--------------------~~I 87 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQH--------------------PGI 87 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcc--cccCceeeEEeecCCCC--------------------CCc
Confidence 68999999998753221111123599999996543222 22232 6999998 310 112
Q ss_pred EEeeCCCCCCCCccCCCCcEEEEccee
Q 028335 179 TELTWGDDPDQDLIQPLPDYGNESLLL 205 (210)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~Dvi 205 (210)
.+.|+-+..-..-.+..||+|.+|=|+
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEE
Confidence 233333321111134689999988665
No 275
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=85.69 E-value=0.65 Score=38.97 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=30.4
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcC-CEEEEEeh-HHHHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g-~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
..++.++||+|||.-+..+..|..- .+++++|+ +...+.+++-++
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 4578899999999977766555444 47999999 777776666543
No 276
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.00 E-value=1.9 Score=36.31 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=26.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHcC-------CEEEEEeh
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLG-------AQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g-------~~Vv~tD~ 152 (210)
.++..++|+|||.|.++..++..- ..++++|.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 466789999999999999988642 36999998
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.51 E-value=2.7 Score=36.72 Aligned_cols=43 Identities=33% Similarity=0.433 Sum_probs=34.0
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~N 162 (210)
..++++|+=.|+|- |.+++.+|+ .|++|+++|. ++-++.+++-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 34789999999983 677777887 6999999999 7777666654
No 278
>PRK10458 DNA cytosine methylase; Provisional
Probab=83.49 E-value=2.7 Score=38.37 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=34.8
Q ss_pred CCEEEEECCccCHHHHHHHHcCCE-EEEEeh-HHHHHHHHHHH
Q 028335 123 GKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~g~~-Vv~tD~-~~~l~~~~~N~ 163 (210)
.-+++||-||.|-+++.+-..|.+ |.++|. +.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 458999999999888888888886 788999 88888888875
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=83.08 E-value=4.8 Score=34.39 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=53.6
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCC--EEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~--~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.+.|+.|+=+| ---+.|++++.-+. +|..+|+ +..++..++-++.-+.. ++.+..+|..++.+..+ ...|
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-----~ie~~~~Dlr~plpe~~-~~kF 222 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-----NIEAFVFDLRNPLPEDL-KRKF 222 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-----chhheeehhcccChHHH-HhhC
Confidence 46889999999 55788888887654 7999999 77899999988877754 46666666555543322 3467
Q ss_pred cEEE
Q 028335 197 DYGN 200 (210)
Q Consensus 197 D~Ii 200 (210)
|+.+
T Consensus 223 Dvfi 226 (354)
T COG1568 223 DVFI 226 (354)
T ss_pred Ceee
Confidence 7765
No 280
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=82.41 E-value=4.2 Score=34.41 Aligned_cols=43 Identities=28% Similarity=0.220 Sum_probs=35.1
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHh
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
...+||--|||.|.++.-+|++|..+.+.|. -.|+ +-.|.-.|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Ml--l~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFML--LASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHH--HHHHHHHc
Confidence 4568999999999999999999999999999 5663 44444444
No 281
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=82.28 E-value=8.4 Score=33.98 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc----------CCEEEEEeh-HHHHHHHHHHHH
Q 028335 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL----------GAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 104 ~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~----------g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
..++.|+.+....- .....-.++|||+|.|.+..-+.+. ..++..++. +.....=|++++
T Consensus 60 ella~~~~~~wq~~-g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 60 ELLAEQFLQLWQEL-GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred HHHHHHHHHHHHHh-cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 44566666543311 0113347999999999888765542 347999999 555444444444
No 282
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.00 E-value=3.5 Score=35.41 Aligned_cols=41 Identities=32% Similarity=0.544 Sum_probs=31.1
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
.++.+||=.|||. |+.++.+++. |+ +|+++|. ++.++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 3688999899876 7777777764 77 6999998 777776654
No 283
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.92 E-value=3.3 Score=32.87 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=22.1
Q ss_pred EEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHH
Q 028335 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 125 ~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~ 160 (210)
+|-=+|.|. | ..+..+|..|.+|+++|. ++.++.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 455667765 5 334456677999999999 77666544
No 284
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=80.56 E-value=3.1 Score=36.20 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCEEEEECCccCHHHHHHHHc------------C------CEEEEEehH-HH----HHHHHHHHHHhccCCCCCCceEEE
Q 028335 123 GKKIVELGSGCGLVGCIAALL------------G------AQVILTDLP-DR----LRLLKKNIENNLRHGDLRGSAVVT 179 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~------------g------~~Vv~tD~~-~~----l~~~~~N~~~n~~~~~~~~~~~~~ 179 (210)
.-+|+|+||.+|..++.+... + .+|+..|+| .- ...+-.+....... .++-+.
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~----~~~f~~ 92 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF----RNYFVS 92 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT----TSEEEE
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC----ceEEEE
Confidence 348999999999998876542 2 279999993 22 23333332211111 122222
Q ss_pred EeeCCCCCCCCccCCCCcEEEEcceeee
Q 028335 180 ELTWGDDPDQDLIQPLPDYGNESLLLFL 207 (210)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~DviY~ 207 (210)
... |......++..+.|++.++=.+++
T Consensus 93 gvp-gSFy~rLfP~~Svh~~~Ss~alHW 119 (334)
T PF03492_consen 93 GVP-GSFYGRLFPSNSVHFGHSSYALHW 119 (334)
T ss_dssp EEE-S-TTS--S-TT-EEEEEEES-TTB
T ss_pred ecC-chhhhccCCCCceEEEEEechhhh
Confidence 222 344555666677777777766554
No 285
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.34 E-value=4.1 Score=30.05 Aligned_cols=30 Identities=37% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCEEEEECCcc-CHHHHHHHHcCCEEEEEeh
Q 028335 123 GKKIVELGSGC-GLVGCIAALLGAQVILTDL 152 (210)
Q Consensus 123 ~~~VLELGcGt-Gl~~l~la~~g~~Vv~tD~ 152 (210)
.++|+|+|.|- =-++-.++++|..|++||+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEec
Confidence 34899999986 3566677888999999999
No 286
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.23 E-value=3.7 Score=36.90 Aligned_cols=41 Identities=29% Similarity=0.295 Sum_probs=30.7
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~ 160 (210)
.+.+++|+=+|+|. |......++ .|++|+.+|. +..+..++
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 46899999999997 766665554 5889999998 65544443
No 287
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.11 E-value=3.4 Score=35.61 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.3
Q ss_pred cCCCEEEEECCcc-CHHHHHHHH--cC-CEEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAAL--LG-AQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~--~g-~~Vv~tD~-~~~l~~~~~ 161 (210)
.++.+||=+|||. |++.+.+++ .| .+|+++|. ++-++.++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4688999999986 777666665 34 57999998 766666654
No 288
>PRK08703 short chain dehydrogenase; Provisional
Probab=80.01 E-value=11 Score=30.25 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=29.2
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++++++|=.||+ |.+|..+++ .|++|++++. ++.++.+...+.
T Consensus 4 l~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 4 LSDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHH
Confidence 467899999964 555555543 4889999998 665555444443
No 289
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=79.92 E-value=7.8 Score=34.90 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=48.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-C--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~f 196 (210)
.++.+|||++|-.|-=+..+|.+ . ..|+|.|. ...+..++.|+...+.. +..+..++-.......+. ++|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKEFP-GSF 313 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccccC-ccc
Confidence 37889999999997544444433 2 36999999 78899999999988864 333444442222122222 268
Q ss_pred cEEE
Q 028335 197 DYGN 200 (210)
Q Consensus 197 D~Ii 200 (210)
|-|+
T Consensus 314 DRVL 317 (460)
T KOG1122|consen 314 DRVL 317 (460)
T ss_pred ceee
Confidence 8776
No 290
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=79.34 E-value=2.4 Score=32.58 Aligned_cols=55 Identities=13% Similarity=-0.144 Sum_probs=34.4
Q ss_pred EEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEEcceeee
Q 028335 148 ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNESLLLFL 207 (210)
Q Consensus 148 v~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia~DviY~ 207 (210)
+++|. ++|++.++++....... ...++.+...+-. +..+.+.+||+|++..++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~---~lp~~~~~fD~v~~~~~l~~ 56 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAI---DLPFDDCEFDAVTMGYGLRN 56 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechh---hCCCCCCCeeEEEecchhhc
Confidence 47899 99999998776533211 0124555554432 22345668999999877653
No 291
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=78.78 E-value=7.4 Score=33.23 Aligned_cols=38 Identities=29% Similarity=0.292 Sum_probs=29.5
Q ss_pred CEEEEECCcc--CHHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 124 KKIVELGSGC--GLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 124 ~~VLELGcGt--Gl~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
++|+=+|+|. |+++..|++.|.+|++++. .+-++.+++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~ 43 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ 43 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh
Confidence 4688999997 5788888888889999998 555555544
No 292
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.51 E-value=9.1 Score=32.85 Aligned_cols=49 Identities=24% Similarity=0.273 Sum_probs=37.5
Q ss_pred cccCCCEEEEECCccC---HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 119 LLLHGKKIVELGSGCG---LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 119 ~~~~~~~VLELGcGtG---l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
..+.|+.||==|.|.| .+++.+|++|++++..|+ ++..+...+.++.++
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC
Confidence 4568899999999998 466677888999999999 666655555555543
No 293
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.80 E-value=4.9 Score=34.62 Aligned_cols=42 Identities=31% Similarity=0.544 Sum_probs=31.1
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=+|||. |...+.+++. |++|+++|. ++.++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34688999999966 7666666654 789999998 766666643
No 294
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=77.66 E-value=7 Score=29.25 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=27.2
Q ss_pred EECCccC--HHHHHHH--Hc--CCEEEEEeh-HHHHHHHHHH--HHHhcc
Q 028335 128 ELGSGCG--LVGCIAA--LL--GAQVILTDL-PDRLRLLKKN--IENNLR 168 (210)
Q Consensus 128 ELGcGtG--l~~l~la--~~--g~~Vv~tD~-~~~l~~~~~N--~~~n~~ 168 (210)
|+|++.| ...+.+. +. +.+|+++|. +..++.+++| +..|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 7999999 4444332 23 458999999 9999999999 776643
No 295
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.58 E-value=5.4 Score=34.97 Aligned_cols=41 Identities=37% Similarity=0.602 Sum_probs=33.5
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
.++.+|.=+|||. |+.++.-|+. |+ +++++|+ +.-++++++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 4678999999987 8888887765 66 6999999 888877765
No 296
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.04 E-value=4.8 Score=33.52 Aligned_cols=41 Identities=39% Similarity=0.660 Sum_probs=29.5
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CCE-EEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GAQ-VILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~~-Vv~tD~-~~~l~~~~~ 161 (210)
.++.+||=.|+|. |++.+.+++. |++ |+++|. ++.++.+++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3788999999876 6666666654 775 999987 666655544
No 297
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=76.96 E-value=4.3 Score=36.22 Aligned_cols=37 Identities=41% Similarity=0.705 Sum_probs=25.9
Q ss_pred EEEEECCcc-CH-HHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 125 KIVELGSGC-GL-VGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 125 ~VLELGcGt-Gl-~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
+|--+|+|. |+ .|..+|..|++|+++|+ +.-++.+++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~ 41 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNK 41 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhC
Confidence 455677776 64 34456778999999999 776666543
No 298
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=76.66 E-value=5.8 Score=34.76 Aligned_cols=43 Identities=35% Similarity=0.581 Sum_probs=33.0
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~N 162 (210)
..++.+||.+|||. |...+.+++. |. +|+++|. ++.++.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 34788999999987 7777777764 66 5999998 7777777654
No 299
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=76.56 E-value=5.1 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=16.4
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL 152 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~ 152 (210)
++..|-|+|||-+.++..+. .+.+|...|+
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~~~~V~SfDL 101 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-NKHKVHSFDL 101 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S---EEEEES
T ss_pred CCEEEEECCCchHHHHHhcc-cCceEEEeec
Confidence 45689999999998885543 3445666665
No 300
>PLN02740 Alcohol dehydrogenase-like
Probab=76.53 E-value=5.4 Score=34.90 Aligned_cols=42 Identities=29% Similarity=0.469 Sum_probs=30.8
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=+|+|. |...+.+|+. |+ +|+++|. ++.++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 44688999999876 6666666654 77 6999998 666666643
No 301
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=76.49 E-value=4.7 Score=32.52 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=27.2
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcC-C--EEEEEeh
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLG-A--QVILTDL 152 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g-~--~Vv~tD~ 152 (210)
+.++.+|||+||-.|.-+..+-++. . .|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 4578899999999999988887763 3 5899987
No 302
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=76.22 E-value=6.2 Score=34.33 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=30.5
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|||. |.+.+.+|+. |+ +|+++|. ++.++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34688999999876 7776766754 77 7999998 666665543
No 303
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.86 E-value=1.9 Score=38.30 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCEEEEECCccCHHHHHHHHc------------C-----CEEEEEehH
Q 028335 123 GKKIVELGSGCGLVGCIAALL------------G-----AQVILTDLP 153 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~------------g-----~~Vv~tD~~ 153 (210)
..+|+|||||+|..++.+... + .+|...|++
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP 111 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP 111 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence 458999999999888765321 1 368899983
No 304
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=74.73 E-value=4.7 Score=35.08 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=30.5
Q ss_pred EEEECCccCHH-HHHHHH-cCCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 126 IVELGSGCGLV-GCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 126 VLELGcGtGl~-~l~la~-~g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
=+|+|.|+-.+ .+.-++ .+...++||+ ...++.++.|+..|++.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls 152 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS 152 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc
Confidence 47887765422 222222 2456899999 66799999999999876
No 305
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=74.64 E-value=7 Score=33.47 Aligned_cols=42 Identities=26% Similarity=0.225 Sum_probs=30.1
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+|. |.+.+.+++ .|++|++++. ++-++.+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 34688999999864 555555565 4889999998 666666555
No 306
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=74.02 E-value=1.1 Score=40.91 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=41.6
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CC-EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GA-QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~-~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
++-+|||-=|+||+-++..++. |. +|++-|. +.++...++|++.|+..
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~ 160 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE 160 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch
Confidence 4568999999999999999986 33 6999999 89999999999999654
No 307
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.56 E-value=11 Score=31.03 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=23.6
Q ss_pred cCCCEEEEECCcc-C-HHHHHHHHcCC-EEEEEeh
Q 028335 121 LHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~ 152 (210)
+++.+|+=+|||. | .+...|++.|. +++.+|.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5778999999985 4 44445666676 7888886
No 308
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=73.43 E-value=4.4 Score=29.26 Aligned_cols=30 Identities=43% Similarity=0.583 Sum_probs=23.8
Q ss_pred ccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHH
Q 028335 132 GCGLVGCIAALL-GAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 132 GtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~ 161 (210)
|.|+.++.+++. |++|+++|. +.-++.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 568888888864 889999999 777777665
No 309
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=72.79 E-value=8 Score=35.77 Aligned_cols=41 Identities=32% Similarity=0.407 Sum_probs=32.1
Q ss_pred cCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
.++.+|+=+|||. |+.++.+++ +|++|+++|. +..++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4678999999997 888777665 5899999999 776665554
No 310
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=72.19 E-value=3.3 Score=29.08 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=5.6
Q ss_pred EEECCccCHHHHHHHHc----C-CEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 127 VELGSGCGLVGCIAALL----G-AQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 127 LELGcGtGl~~l~la~~----g-~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
||+|+..|..++.+++. + .+++++|. +. .+..+++++..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~ 46 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG 46 (106)
T ss_dssp --------------------------EEEESS-------------GG
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC
Confidence 69999999888777653 2 27999999 64 333444444333
No 311
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=71.74 E-value=18 Score=30.63 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=21.1
Q ss_pred cCCCEEEEECCccCHH-HH--HHHHcCCE-EEEEeh
Q 028335 121 LHGKKIVELGSGCGLV-GC--IAALLGAQ-VILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~-~l--~la~~g~~-Vv~tD~ 152 (210)
.+++++|=+|+| |.- ++ .++..|++ |+.++.
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeC
Confidence 568899999997 532 22 23456774 888887
No 312
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.61 E-value=17 Score=32.33 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=37.2
Q ss_pred EEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHHH
Q 028335 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 98 ~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~~ 160 (210)
.+|+...+.-+-|. +-++.+||=|.+| |...+.++..++ +|+++|+ +.-+.+++
T Consensus 19 ~~WEDp~vD~~aL~--------i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 19 QCWEDPRVDMEALN--------IGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred cccCCcHHHHHHhC--------CCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence 46888877766665 3478899999876 555565555554 7999999 64333333
No 313
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.41 E-value=13 Score=31.45 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=31.6
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++|-=||+|+ | -++..+++.|.+|+..|. ++.++.++..+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3688899987 3 556666777999999999 8887776665543
No 314
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.27 E-value=9.8 Score=33.14 Aligned_cols=41 Identities=32% Similarity=0.525 Sum_probs=30.4
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
-+|.+|.=+|+|. |+..+.-++. |+ +++++|+ ++-.+.+++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 4788888998886 6655555554 66 7999999 777776665
No 315
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.23 E-value=9.8 Score=33.06 Aligned_cols=42 Identities=36% Similarity=0.608 Sum_probs=30.1
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=+|+|. |.+.+.+++. |+ +|+++|. ++-++.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 34678888899875 6666666654 77 6999998 766666654
No 316
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=69.92 E-value=15 Score=33.68 Aligned_cols=48 Identities=19% Similarity=0.080 Sum_probs=37.8
Q ss_pred CCCEEEEECCccCHHHHHHHHc-C-----CEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL-G-----AQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~-g-----~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+..+|.|-.||+|.+-+..++. + ..+.+.|. +....+++.|+-.++..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 4558999999998665555442 2 34899998 88999999999998875
No 317
>PRK08862 short chain dehydrogenase; Provisional
Probab=69.85 E-value=31 Score=27.83 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=31.7
Q ss_pred cCCCEEEEECCccCH---HHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 121 ~~~~~VLELGcGtGl---~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++++++|=.|++.|+ ++..+++.|++|++++. .+.++.+.+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~ 51 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA 51 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 467899999999875 33345556899999988 6666555555544
No 318
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=69.43 E-value=9.9 Score=32.34 Aligned_cols=41 Identities=39% Similarity=0.547 Sum_probs=28.8
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCE-EEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~-Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=+|+|. |.+.+.+++ .|++ |++++. ++-++.++
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34688999898865 666665665 4777 999988 66555553
No 319
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=69.03 E-value=10 Score=32.66 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=30.0
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|||. |...+.+++. |+ +|+++|. ++-++.+++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34688999999875 6666666654 77 5999998 666666543
No 320
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=68.58 E-value=11 Score=33.58 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=32.7
Q ss_pred CEEEEECCcc-CHHHH-HHHHcC-CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 124 KKIVELGSGC-GLVGC-IAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 124 ~~VLELGcGt-Gl~~l-~la~~g-~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
++||=||||. |.... .+++.+ .+|+..|. ++..+.+..+... ++++..+|-.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---------~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---------KVEALQVDAAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---------cceeEEecccC
Confidence 5799999964 43322 345556 58999999 6766555544322 35556666444
No 321
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=68.35 E-value=16 Score=30.45 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=41.7
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
...+..|||--+|+|..++++.+.|-+.++.|+ ++.++.+.+.+....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 357889999999999999999999999999999 888888887776553
No 322
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=68.25 E-value=8 Score=32.75 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=28.7
Q ss_pred CCCEEEEECCcc-CHHHHHHHHc-CCE-EEEEeh-HHHHHHHHH
Q 028335 122 HGKKIVELGSGC-GLVGCIAALL-GAQ-VILTDL-PDRLRLLKK 161 (210)
Q Consensus 122 ~~~~VLELGcGt-Gl~~l~la~~-g~~-Vv~tD~-~~~l~~~~~ 161 (210)
++++||=+|||. |++++.+++. |++ |+++|. ++.++.++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 567888889886 7777777764 776 777887 666655543
No 323
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=68.01 E-value=25 Score=28.22 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=31.6
Q ss_pred CEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 124 KKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
+++|=.|+ +|.+|..+++ .|++|++++. +...+.+...+...+ .++.....|+.+
T Consensus 2 ~~vlItGa-~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 61 (255)
T TIGR01963 2 KTALVTGA-ASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG------GSVIYLVADVTK 61 (255)
T ss_pred CEEEEcCC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCCC
Confidence 45777774 4556666553 4889999998 554444444333221 235555566554
No 324
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=67.64 E-value=15 Score=30.92 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=29.6
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++|.=+|+|. | .++..+++.|.+|++.|. ++.++.+++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 4677889986 4 456666777889999999 77777655543
No 325
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.64 E-value=37 Score=27.38 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=29.6
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+++++||=.|+ +|.+|..+++ .|++|++++. +..++.+...+.
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 57889999996 4556666554 4889999998 655555444443
No 326
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.46 E-value=16 Score=30.73 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=29.3
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++|.=||+|. | .++..+++.|.+|++.|. ++.++.+++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 4677789886 3 445556667889999999 77777776654
No 327
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=66.41 E-value=42 Score=27.14 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=30.0
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++++++|=.|+ +|.+|..+++ .|++|+.++. .+-++.+...+.
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 57 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE 57 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 47889999995 5666776654 4889999998 655555554444
No 328
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=66.24 E-value=32 Score=32.38 Aligned_cols=82 Identities=12% Similarity=-0.025 Sum_probs=43.1
Q ss_pred ccCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHHHhccC---CCCCCceEEEEeeCCCCCCCCc
Q 028335 120 LLHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRH---GDLRGSAVVTELTWGDDPDQDL 191 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~---~~~~~~~~~~~l~w~~~~~~~~ 191 (210)
...+++||=.|+. |.+|..++ +.|++|++++. .+.+..+..++....+. .....++.+...|..+.....-
T Consensus 77 ~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 4577888888874 66666654 34889999888 55554444444332211 0001235556666544221100
Q ss_pred cCCCCcEEEEc
Q 028335 192 IQPLPDYGNES 202 (210)
Q Consensus 192 ~~~~fD~Iia~ 202 (210)
.-...|+||.+
T Consensus 156 aLggiDiVVn~ 166 (576)
T PLN03209 156 ALGNASVVICC 166 (576)
T ss_pred HhcCCCEEEEc
Confidence 11346776654
No 329
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=66.06 E-value=14 Score=31.85 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=24.9
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CCEEEEEeh
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~~Vv~tD~ 152 (210)
.++.+||=+|+|. |.+++.+++. |++|++++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 4678999999876 7777767654 789999875
No 330
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=65.78 E-value=16 Score=31.75 Aligned_cols=41 Identities=34% Similarity=0.546 Sum_probs=28.8
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=+|+|. |.+.+.+++ .|+ +|+++|. ++-++.++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34688999999865 666666665 477 6999998 66555553
No 331
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.57 E-value=74 Score=26.07 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=38.5
Q ss_pred EEEecc--HHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc-C-CEEEEEeh-HHHH
Q 028335 97 SVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRL 156 (210)
Q Consensus 97 ~~~W~a--a~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~-g-~~Vv~tD~-~~~l 156 (210)
++.|++ |.+-|..|... + +..+.++.+||=||+-+|...-..+.. + ..+.+++. +...
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl-~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~ 113 (231)
T COG1889 51 YREWNPRRSKLAAAILKGL-K-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM 113 (231)
T ss_pred eeeeCcchhHHHHHHHcCc-c-cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH
Confidence 789986 33344444332 1 123457889999999999766666654 4 36999998 6543
No 332
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.97 E-value=46 Score=26.86 Aligned_cols=43 Identities=35% Similarity=0.481 Sum_probs=29.4
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++++++|=.|++.| +|..+ ++.|++|++++. .+.++.+...+.
T Consensus 7 ~~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 7 LHGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIG 54 (253)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 47889999998765 34443 445889999998 665555555444
No 333
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=64.82 E-value=15 Score=31.72 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=28.1
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLL 159 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~ 159 (210)
..++.+||=.|+|. |.+.+.+++. |+ +|+++|. ++.++.+
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~ 228 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA 228 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 34788999998765 6665656654 77 7999987 6655554
No 334
>PLN02827 Alcohol dehydrogenase-like
Probab=64.79 E-value=15 Score=32.08 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=28.8
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=.|+|. |.+.+.+++ +|+ .|+++|. ++.++.++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 45788999999876 666666665 477 5889996 65555553
No 335
>PRK06949 short chain dehydrogenase; Provisional
Probab=64.56 E-value=54 Score=26.34 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=28.7
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
+.+++||=.|+ +|.+|..+++ .|++|++++. ++.++.+...+
T Consensus 7 ~~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 7 LEGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46789999995 4555555543 4889999988 66655555544
No 336
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=64.09 E-value=12 Score=27.87 Aligned_cols=44 Identities=30% Similarity=0.560 Sum_probs=28.7
Q ss_pred ccCCCEEEEECCcc-C-HHHHHHHHcCC-EEEEEeh-HHHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 120 ~~~~~~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~-~~~l~~~~~N~ 163 (210)
.+++++||=||+|- | .+...++..|+ +|+.+.. .+-.+.+.+.+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 46899999999985 3 33334555677 4988888 55444444443
No 337
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.98 E-value=21 Score=30.92 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=29.5
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++|-=+|+|+ | -++..++..|.+|++.|. ++.++.++..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 5788889986 4 455556677999999999 77766655544
No 338
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=63.29 E-value=17 Score=31.41 Aligned_cols=41 Identities=29% Similarity=0.526 Sum_probs=28.9
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=+|+|. |...+.+++. |+ +|+++|. ++.++.++
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 45688999888865 6666666654 77 7999998 66655553
No 339
>PRK07063 short chain dehydrogenase; Provisional
Probab=63.14 E-value=58 Score=26.30 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=36.3
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
++++++|=.|++.| +|..+ ++.|++|++++. ++.++.+.+.+...... .++.+...|..+
T Consensus 5 l~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~ 69 (260)
T PRK07063 5 LAGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAG----ARVLAVPADVTD 69 (260)
T ss_pred cCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCC----ceEEEEEccCCC
Confidence 46889999998654 44444 345889999998 66665555554432111 234555555544
No 340
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=62.67 E-value=19 Score=34.78 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=32.9
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++|-=+|+|+ | -++..++..|..|+..|. ++.++.+++++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~ 358 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAK 358 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4788999998 4 566677788999999999 8887776665543
No 341
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=62.63 E-value=23 Score=27.61 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=25.8
Q ss_pred ccCCCEEEEECCc-c-CH-HHHHHHHcCCEEEEEeh
Q 028335 120 LLHGKKIVELGSG-C-GL-VGCIAALLGAQVILTDL 152 (210)
Q Consensus 120 ~~~~~~VLELGcG-t-Gl-~~l~la~~g~~Vv~tD~ 152 (210)
.+.+++||=+|+| + |. +.-.|...|++|+.++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 4689999999999 3 76 55555567888988887
No 342
>PRK08339 short chain dehydrogenase; Provisional
Probab=62.62 E-value=66 Score=26.30 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=29.5
Q ss_pred cCCCEEEEECCccCHHHHH----HHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~----la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++++++|=.|++.|+ |.. +++.|++|++++. ++.++.+.+.+.
T Consensus 6 l~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 6 LSGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIK 53 (263)
T ss_pred CCCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 578889999987653 333 4445899999998 665555555543
No 343
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.51 E-value=28 Score=29.29 Aligned_cols=42 Identities=36% Similarity=0.491 Sum_probs=29.8
Q ss_pred CCEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 123 GKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 123 ~~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
-++|.=+|+|. | .++..+++.|.+|++.|. ++.++.+.+.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 35677889986 3 455566677889999999 777766554443
No 344
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=61.48 E-value=19 Score=29.24 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=22.7
Q ss_pred cCCCEEEEECCcc-C-HHHHHHHHcCC-EEEEEeh
Q 028335 121 LHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~ 152 (210)
+.+.+|+=+|||. | .+...|++.|. +++.+|.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5778999999985 4 44445666675 6777764
No 345
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.44 E-value=23 Score=34.07 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=32.1
Q ss_pred CEEEEECCcc-C-HHHHHHH-HcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAA-LLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la-~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++|.=||+|+ | -++..++ ..|..|+..|. ++.++.++.++..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5799999998 4 4555566 66999999999 8877777666543
No 346
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=60.99 E-value=61 Score=25.75 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=35.1
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
..+++||=.|++ |.+|..++ +.|++|++++. ...+..+...+...+ .++.+...|+.+
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~ 66 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG------GKARARQVDVRD 66 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence 367789988864 55666554 34889999988 555444444443332 125555666654
No 347
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=60.94 E-value=8.7 Score=30.43 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=37.5
Q ss_pred CCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
.+.+-+|+|+..|.+.-.+|+. ..++++++. .+|-+.++.|++.|+..
T Consensus 79 hdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnpl 129 (286)
T PF05575_consen 79 HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNPL 129 (286)
T ss_pred CCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCcc
Confidence 4568999999999655555543 457999999 88988899999888654
No 348
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.80 E-value=21 Score=34.39 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=32.9
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++|.=||+|+ | -++..++..|.+|+..|. ++.++.++..+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4799999998 4 566677788999999999 8887766655543
No 349
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=60.75 E-value=20 Score=30.88 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=30.1
Q ss_pred ccCCCEEEEECC-c-cCHHHHHHHHc-CCEEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGS-G-CGLVGCIAALL-GAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGc-G-tGl~~l~la~~-g~~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=.|+ | .|.+.+.+|+. |++|++++. ++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 347889999998 4 37777777764 889999987 65555554
No 350
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=60.50 E-value=22 Score=29.88 Aligned_cols=42 Identities=33% Similarity=0.554 Sum_probs=29.4
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
+.++.+||-.|+|. |...+.+++ .|.+|++++. ++..+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 34677888888764 666666665 4889999988 666655543
No 351
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=60.45 E-value=68 Score=25.04 Aligned_cols=42 Identities=33% Similarity=0.409 Sum_probs=26.1
Q ss_pred ccCCCEEEEECC-cc-CH-HHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGS-GC-GL-VGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGc-Gt-Gl-~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
.+++++++=+|+ |. |. +...+++.|++|+.++. .+.++.+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 457889999996 43 42 33334456788988887 544443333
No 352
>PRK05876 short chain dehydrogenase; Provisional
Probab=60.37 E-value=61 Score=26.79 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=27.8
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++++|=.|++.| +|..+ ++.|++|+++|. ...++.+.+.+
T Consensus 4 ~~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l 50 (275)
T PRK05876 4 FPGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHL 50 (275)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 57888998888765 34443 345889999998 55554444433
No 353
>PRK07035 short chain dehydrogenase; Provisional
Probab=60.30 E-value=66 Score=25.77 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=28.9
Q ss_pred cCCCEEEEECCccCHHHHH----HHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~----la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+++++||=.|++.| +|.. +++.|++|++++. ...++.+.+.+.
T Consensus 6 l~~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 6 LTGKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIV 53 (252)
T ss_pred cCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 56788999998765 3443 3345889999998 665555544443
No 354
>PLN02780 ketoreductase/ oxidoreductase
Probab=59.73 E-value=54 Score=28.03 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCCEEEEECCccCH---HHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 122 ~~~~VLELGcGtGl---~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
.++.+|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence 47889999987663 23334456889999998 7767666666654
No 355
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=59.51 E-value=16 Score=32.30 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=46.2
Q ss_pred cCCCEEEEECCccCHHHHHHHHc-CCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcE
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~-g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~ 198 (210)
+++..++++|||.|-+....+.. ++++++.|. +.-+.....-.....+. ++..+ ...| .....+.+..||.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~----~k~~~-~~~~--~~~~~fedn~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD----NKCNF-VVAD--FGKMPFEDNTFDG 181 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh----hhcce-ehhh--hhcCCCCccccCc
Confidence 45668999999999888888876 568999998 54333222222222222 11111 2221 1122334567898
Q ss_pred EEEcceee
Q 028335 199 GNESLLLF 206 (210)
Q Consensus 199 Iia~DviY 206 (210)
+-+.|++-
T Consensus 182 v~~ld~~~ 189 (364)
T KOG1269|consen 182 VRFLEVVC 189 (364)
T ss_pred EEEEeecc
Confidence 88888754
No 356
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.49 E-value=23 Score=28.39 Aligned_cols=40 Identities=40% Similarity=0.605 Sum_probs=28.6
Q ss_pred cCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~ 160 (210)
.++.+||-.|+|. |...+.+++ .|.+|++++. ++..+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4788999999986 544444454 4789999998 66655554
No 357
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=59.26 E-value=18 Score=30.84 Aligned_cols=40 Identities=38% Similarity=0.687 Sum_probs=28.5
Q ss_pred cCCCEEEEECCcc-CHHHHHHHH-cCCE-EEEEeh-HHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLK 160 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~-~g~~-Vv~tD~-~~~l~~~~ 160 (210)
.++.+||=+|+|. |...+.+++ .|++ |++++. ++.++.++
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 4678999999876 666666665 4776 788887 66655553
No 358
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=59.07 E-value=24 Score=32.38 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=43.6
Q ss_pred EEEEECCccCHHHHHHHHcCC-EEEEEeh-HHHHHHH-HHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCCCcEEEE
Q 028335 125 KIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLL-KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYGNE 201 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la~~g~-~Vv~tD~-~~~l~~~-~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~fD~Iia 201 (210)
++|.||||.--+..-+-+-|. .|+.+|. +-+++.+ ..|+..+. -......+ .....+.++.||+||.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~-------~~~~~~~d---~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERP-------EMQMVEMD---MDQLVFEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCc-------ceEEEEec---chhccCCCcceeEEEe
Confidence 899999999988888888787 4999999 6555444 34432221 12222222 2334456678888875
Q ss_pred c
Q 028335 202 S 202 (210)
Q Consensus 202 ~ 202 (210)
-
T Consensus 121 k 121 (482)
T KOG2352|consen 121 K 121 (482)
T ss_pred c
Confidence 4
No 359
>PRK07814 short chain dehydrogenase; Provisional
Probab=58.87 E-value=70 Score=26.01 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=28.7
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++++|=.|++ |.+|..++ +.|++|++++. ++.++.+.+.+
T Consensus 8 ~~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 54 (263)
T PRK07814 8 LDDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI 54 (263)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 578899999964 55565544 35889999998 65555444444
No 360
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=58.59 E-value=22 Score=34.44 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=32.8
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++|-=||+|+ | -++..++..|..|+..|. ++.++.++..+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 380 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFK 380 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHH
Confidence 4788999998 3 566667778999999999 8887776666544
No 361
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=58.39 E-value=17 Score=32.10 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=30.8
Q ss_pred CEEEEECCcc-C--HHHHHHHHcCCEEEEEeh-HHHHHHHHHH
Q 028335 124 KKIVELGSGC-G--LVGCIAALLGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 124 ~~VLELGcGt-G--l~~l~la~~g~~Vv~tD~-~~~l~~~~~N 162 (210)
++|+=+|+|. | .++-.+++.|..|+++|. +..++.++++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKR 43 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcC
Confidence 3688899997 5 468888888889999999 7777766555
No 362
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=58.27 E-value=27 Score=30.12 Aligned_cols=44 Identities=36% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHh
Q 028335 123 GKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 123 ~~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
-++|-=+|+|+ | -++..+|..|..|+..|+ +++++.++..+..+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~ 49 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKN 49 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHH
Confidence 35678899998 3 556666665689999999 88877776666544
No 363
>PRK07062 short chain dehydrogenase; Provisional
Probab=58.25 E-value=86 Score=25.36 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=29.0
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++++.+|=.|++.| +|..+ ++.|++|++++. ++.++.+.+.+.
T Consensus 6 l~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 6 LEGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLR 53 (265)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 47889999998765 34433 345889999998 665555544443
No 364
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=57.81 E-value=27 Score=33.58 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=30.7
Q ss_pred CEEEEECCcc-C-HHHHHHH-HcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAA-LLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la-~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++|.=||+|+ | -++..++ +.|.+|+..|. ++.++.+...+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~ 349 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAW 349 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4799999998 4 3444555 47999999999 888777666553
No 365
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.65 E-value=28 Score=29.11 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=26.4
Q ss_pred EEEEECCcc--CHHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 125 KIVELGSGC--GLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 125 ~VLELGcGt--Gl~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
+|-=+|+|. +.++..+++.|.+|++.|. ++.++.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~ 44 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLA 44 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Confidence 566788876 3555566667889999999 777655443
No 366
>PRK07576 short chain dehydrogenase; Provisional
Probab=57.64 E-value=77 Score=25.83 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=27.3
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++++|=.|++ |.+|..++ ..|++|++++. ++.++.....+
T Consensus 7 ~~~k~ilItGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 7 FAGKNVVVVGGT-SGINLGIAQAFARAGANVAVASRSQEKVDAAVAQL 53 (264)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 478899999864 44555443 45889999998 65544443333
No 367
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=57.56 E-value=29 Score=29.56 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=27.7
Q ss_pred EEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 125 ~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
+|.=+|+|. | .++..+++.|.+|++.|. ++.++.++..+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~ 45 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYI 45 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHH
Confidence 577888775 3 445556667889999999 77766665543
No 368
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.50 E-value=28 Score=29.21 Aligned_cols=39 Identities=31% Similarity=0.537 Sum_probs=27.9
Q ss_pred EEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 125 ~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
+|.=+|+|. | .++..+++.|.+|+..|. ++.++.+++++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence 577788875 3 444555667889999999 78777766543
No 369
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=57.40 E-value=41 Score=27.17 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=24.2
Q ss_pred ccCCCEEEEECCcc-C-HHHHHHHHcCC-EEEEEeh
Q 028335 120 LLHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 120 ~~~~~~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~ 152 (210)
.++..+|+=+|||. | .+...+++.|. +++.+|.
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDF 60 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 35788999999985 4 45555666676 5888886
No 370
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=57.32 E-value=12 Score=31.64 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=24.2
Q ss_pred ccCCCEEEEECCcc-C-HHHHHHHHcC-CEEEEEeh
Q 028335 120 LLHGKKIVELGSGC-G-LVGCIAALLG-AQVILTDL 152 (210)
Q Consensus 120 ~~~~~~VLELGcGt-G-l~~l~la~~g-~~Vv~tD~ 152 (210)
.+++.+|+=+|||. | .++..|++.| .+++.+|.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 35788999999995 4 4444566777 47888886
No 371
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=57.08 E-value=41 Score=26.99 Aligned_cols=44 Identities=36% Similarity=0.446 Sum_probs=30.3
Q ss_pred ccCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
.+++++||=.|+ +|.+|..+++ .|++|+++|. ...++.+...+.
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~ 57 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIE 57 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Confidence 468889999996 5556665543 4889999998 655555544443
No 372
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=56.89 E-value=24 Score=31.23 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=31.2
Q ss_pred cCCCEEEEEC-Ccc-CHHHHHHHHc-C--C-EEEEEeh-HHHHHHHHHH
Q 028335 121 LHGKKIVELG-SGC-GLVGCIAALL-G--A-QVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 121 ~~~~~VLELG-cGt-Gl~~l~la~~-g--~-~Vv~tD~-~~~l~~~~~N 162 (210)
.++.+||=+| +|. |++.+.+++. | + +|+++|. ++.++.+++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4577888887 565 8888777765 3 3 7999999 7777777664
No 373
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.76 E-value=66 Score=29.09 Aligned_cols=48 Identities=29% Similarity=0.366 Sum_probs=29.8
Q ss_pred cCCCEEEEECCcc-CHHHH-HHHHcCCEEEEEeh-H-HHHHHHHHHHHHhcc
Q 028335 121 LHGKKIVELGSGC-GLVGC-IAALLGAQVILTDL-P-DRLRLLKKNIENNLR 168 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l-~la~~g~~Vv~tD~-~-~~l~~~~~N~~~n~~ 168 (210)
+++++|+=+|+|. |+-.. .++++|.+|+++|. + .....+.+.++..+.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv 65 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA 65 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC
Confidence 4678999999975 54322 33456889999997 4 333334444555443
No 374
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=56.68 E-value=22 Score=27.08 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.9
Q ss_pred EEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 146 QVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 146 ~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
+|.+.|+ +++++..++.++.++..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~ 25 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE 25 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC
Confidence 6899999 89999999999988765
No 375
>PRK06139 short chain dehydrogenase; Provisional
Probab=56.67 E-value=77 Score=27.26 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=37.1
Q ss_pred cCCCEEEEECCccCHHHHH----HHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~----la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
+++++||=.|++.| +|.. +++.|++|++++. ++.++.+.+.+...+. .+.+...|..+
T Consensus 5 l~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~------~~~~~~~Dv~d 67 (330)
T PRK06139 5 LHGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA------EVLVVPTDVTD 67 (330)
T ss_pred CCCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCC
Confidence 46788998888654 3444 3445899999998 7667666666654332 34455556543
No 376
>PRK05854 short chain dehydrogenase; Provisional
Probab=56.67 E-value=95 Score=26.25 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=36.5
Q ss_pred ccCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
.++++++|=.|++.| +|..+ ++.|++|+++.. .+..+.+.+.+...... ..+.+..+|..+
T Consensus 11 ~l~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~----~~v~~~~~Dl~d 76 (313)
T PRK05854 11 DLSGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPD----AKLSLRALDLSS 76 (313)
T ss_pred ccCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CceEEEEecCCC
Confidence 357888998888765 34444 345889999887 55444444444332111 235566666544
No 377
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.40 E-value=83 Score=24.96 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=27.6
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++++|=.|+ +|.+|..+++ .|++|++++. +..++.+...+
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~ 51 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEV 51 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 35678888885 5666776553 4889999998 55444443333
No 378
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=56.29 E-value=23 Score=31.00 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=24.1
Q ss_pred CCCEEEEECCcc-CHHHHHHHHc-CCEEEEEeh
Q 028335 122 HGKKIVELGSGC-GLVGCIAALL-GAQVILTDL 152 (210)
Q Consensus 122 ~~~~VLELGcGt-Gl~~l~la~~-g~~Vv~tD~ 152 (210)
++.+||=.|+|. |.+.+.+|+. |++|++++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence 678888889876 7676666654 889999886
No 379
>PRK06125 short chain dehydrogenase; Provisional
Probab=56.29 E-value=98 Score=24.98 Aligned_cols=43 Identities=28% Similarity=0.463 Sum_probs=29.2
Q ss_pred cCCCEEEEECCccCHHHHH----HHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~----la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++++++|=.|++.| +|.. ++..|++|++++. ++.++.+...+.
T Consensus 5 ~~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 5 LAGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLR 52 (259)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 46789999997655 4444 3445889999998 665555555444
No 380
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=55.70 E-value=73 Score=25.37 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=30.1
Q ss_pred cccCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHH
Q 028335 119 LLLHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 119 ~~~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N 162 (210)
..+++++|+=+|.|. +|..++ ..|++|+++|. ++.+..++..
T Consensus 24 ~~l~gk~v~I~G~G~--vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 24 DSLEGKTVAVQGLGK--VGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 356889999999984 444444 45899999999 7666555443
No 381
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=55.51 E-value=25 Score=27.07 Aligned_cols=42 Identities=38% Similarity=0.508 Sum_probs=28.8
Q ss_pred cCCCEEEEECCcc-CHHHHHHH-HcCCEEEEEeh-HHHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la-~~g~~Vv~tD~-~~~l~~~~~N 162 (210)
++..+|+=+|.|. |.-++.++ .+|++|+..|. +..++..+.+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc
Confidence 4668999999987 76666655 46999999999 7665554443
No 382
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=55.23 E-value=90 Score=25.05 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=36.9
Q ss_pred ccCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 120 LLHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
.++++++|=.|++.| +|..++ +.|++|++++. ++.++.+...++..+ ..+.+..+|..+
T Consensus 8 ~~~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 71 (256)
T PRK06124 8 SLAGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIAD 71 (256)
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence 357889999997554 455444 45889999998 665555555554332 234555566544
No 383
>PRK08251 short chain dehydrogenase; Provisional
Probab=55.13 E-value=93 Score=24.78 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=33.9
Q ss_pred CCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 123 GKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
++++|=.|+ +|.+|..+++ .|++|++++. +..++.+...+...... ..+.+..+|..+
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~ 64 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPG----IKVAVAALDVND 64 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCC----ceEEEEEcCCCC
Confidence 456887785 4556665543 4789999988 66665555544332111 235555566544
No 384
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=54.71 E-value=58 Score=21.93 Aligned_cols=48 Identities=31% Similarity=0.279 Sum_probs=26.7
Q ss_pred HHHHHHhhhhhcCccccCCCEEEEECCcc-CHH-HHHHHHc-CCEEEEEeh
Q 028335 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLV-GCIAALL-GAQVILTDL 152 (210)
Q Consensus 105 ~la~~L~~~~~~~~~~~~~~~VLELGcGt-Gl~-~l~la~~-g~~Vv~tD~ 152 (210)
....+|..........+++++++-+|+|. |.. ...+... +.++...|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 5 GAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34455554332222346889999999976 322 2222334 456777766
No 385
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=54.38 E-value=64 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEECCcc-C-HHHHHHHHcCC-EEEEEeh
Q 028335 125 KIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 125 ~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~ 152 (210)
+|+=+|||. | .+...+++.|. +++.+|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 478899985 4 45556667776 6999887
No 386
>PRK07890 short chain dehydrogenase; Provisional
Probab=54.12 E-value=1.1e+02 Score=24.45 Aligned_cols=42 Identities=38% Similarity=0.535 Sum_probs=27.5
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
..+++||=.|++.| +|..+ +..|++|++++. +..++.+...+
T Consensus 3 l~~k~vlItGa~~~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 3 LKGKVVVVSGVGPG-LGRTLAVRAARAGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred cCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 46788998887654 44443 345889999998 55444444443
No 387
>PRK06172 short chain dehydrogenase; Provisional
Probab=53.94 E-value=95 Score=24.86 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=35.4
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
++++++|=.|++.| +|..++ +.|++|++++. ++-++.+.+.+...+ .++.+...|..+
T Consensus 5 l~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 67 (253)
T PRK06172 5 FSGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALIREAG------GEALFVACDVTR 67 (253)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence 46789999998654 444443 45889999998 665555555543322 234555555443
No 388
>PRK09291 short chain dehydrogenase; Provisional
Probab=53.80 E-value=65 Score=25.85 Aligned_cols=73 Identities=21% Similarity=0.100 Sum_probs=39.1
Q ss_pred CCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-ccCCCC
Q 028335 123 GKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLP 196 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~-~~~~~f 196 (210)
+++||=.|++. .+|..++ +.|++|++++. +.....++......+ ..+.+...|+.+..... ....+.
T Consensus 2 ~~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 2 SKTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG------LALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcceEEEeeCCCHHHHHHHhcCCC
Confidence 35688888754 4555544 45889999887 554444443333222 13555666765532110 112256
Q ss_pred cEEEEc
Q 028335 197 DYGNES 202 (210)
Q Consensus 197 D~Iia~ 202 (210)
|++|.+
T Consensus 75 d~vi~~ 80 (257)
T PRK09291 75 DVLLNN 80 (257)
T ss_pred CEEEEC
Confidence 766653
No 389
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.45 E-value=47 Score=26.29 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
.+++||=.|+ +|.+|..+++ .|++|++++. +..+..+.+.+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAEL 50 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHH
Confidence 5678999996 5666666553 4789999998 65444444433
No 390
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=53.33 E-value=31 Score=30.41 Aligned_cols=40 Identities=35% Similarity=0.507 Sum_probs=27.9
Q ss_pred cCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~ 160 (210)
+++.+|+=+|+|. |...+..++ +|++|+.+|. +..++.+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLD 207 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence 3567899999985 655555443 5889999998 66555443
No 391
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=52.97 E-value=50 Score=26.27 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=21.4
Q ss_pred cCCCEEEEECCcc-C-HHHHHHHHcCC-EEEEEeh
Q 028335 121 LHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~ 152 (210)
+++.+||=+|||. | -+...+++.|. +++.+|.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 5788999999985 2 22333444565 6888886
No 392
>PRK07102 short chain dehydrogenase; Provisional
Probab=52.76 E-value=96 Score=24.69 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=31.4
Q ss_pred CEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 124 KKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
++++=.|+. |.+|..+++ .|++|++++. +.-.+.+.+++..+.. .++.+...|..+
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~ 62 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-----VAVSTHELDILD 62 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-----CeEEEEecCCCC
Confidence 467877854 555665443 4889999998 5544444444333211 234555555443
No 393
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=52.52 E-value=81 Score=24.55 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=30.3
Q ss_pred CCC-EEEEECCccCHHHHHHHHc--CCEEEEEehHHHHHHHHHHHHHh
Q 028335 122 HGK-KIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENN 166 (210)
Q Consensus 122 ~~~-~VLELGcGtGl~~l~la~~--g~~Vv~tD~~~~l~~~~~N~~~n 166 (210)
++. .|+.||||-=..+..+... +.+++=+|.++++..-++-+..+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~ 124 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPES 124 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhC
Confidence 444 8999999987777777764 44788888888877766666555
No 394
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=52.49 E-value=59 Score=26.42 Aligned_cols=52 Identities=21% Similarity=0.119 Sum_probs=28.9
Q ss_pred cEEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHc------CCEEEEEeh
Q 028335 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL------GAQVILTDL 152 (210)
Q Consensus 96 G~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~------g~~Vv~tD~ 152 (210)
|..++..-.-++.|-.--. -++.+.|+|+|.-.|--.+..|.. ..+|+++|+
T Consensus 11 G~pi~q~P~Dm~~~qeli~-----~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDI 68 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIW-----ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDI 68 (206)
T ss_dssp TEEESS-HHHHHHHHHHHH-----HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES
T ss_pred CeehhcCHHHHHHHHHHHH-----HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeC
Confidence 5555555554544432111 147889999999998777766542 348999999
No 395
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=52.35 E-value=31 Score=31.00 Aligned_cols=35 Identities=40% Similarity=0.593 Sum_probs=26.0
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PD 154 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~ 154 (210)
.+.+++|+=+|+|. |......++ .|++|+++|. +.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 46899999999987 654444443 4889999987 53
No 396
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=52.26 E-value=42 Score=30.97 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=32.5
Q ss_pred CCCEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 122 ~~~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+-++|-=+|+|+ | -++..+++.|..|+..|. ++.++.++.+++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~ 49 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIE 49 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 445788899987 4 566667778999999999 888776655544
No 397
>PRK07774 short chain dehydrogenase; Provisional
Probab=52.18 E-value=1.1e+02 Score=24.38 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=27.9
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++++|=.|+ +|.+|..+++ .|++|++++. +..++.+.+.+
T Consensus 4 ~~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 4 FDDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQI 50 (250)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46788888885 4556666554 4889999998 55444444433
No 398
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.92 E-value=7.6 Score=34.36 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=29.4
Q ss_pred ccCCCEEEEECCccCHHHHHHHHcCC---EEEEEehHHHHHHHHHHHHHhc
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALLGA---QVILTDLPDRLRLLKKNIENNL 167 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~g~---~Vv~tD~~~~l~~~~~N~~~n~ 167 (210)
.|..+++||+|.|.|....++-..-. .++.++...+++..-..+..|.
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv 161 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV 161 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc
Confidence 46778899999999865444333211 4666666445555555555554
No 399
>PRK09242 tropinone reductase; Provisional
Probab=51.19 E-value=1.2e+02 Score=24.45 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=29.8
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++++++|=.|++.| +|..+ ++.|++|++++. .+.++.+..++..
T Consensus 7 ~~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~ 55 (257)
T PRK09242 7 LDGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAE 55 (257)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 47889999998654 34433 345889999998 6656555555543
No 400
>PRK05866 short chain dehydrogenase; Provisional
Probab=51.02 E-value=1.1e+02 Score=25.47 Aligned_cols=43 Identities=35% Similarity=0.477 Sum_probs=29.2
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+.++++|=.|++.| +|..++ +.|++|++++. .+.++.+.+.+.
T Consensus 38 ~~~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~ 85 (293)
T PRK05866 38 LTGKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRIT 85 (293)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 46788999998654 454443 45889999998 666555555443
No 401
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=51.02 E-value=28 Score=30.17 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=24.4
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CCEEEEEeh
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~~Vv~tD~ 152 (210)
.++.+||=.|+|. |.+.+.+++. |++|++++.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3677888899876 7777777754 888888876
No 402
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=51.00 E-value=20 Score=34.90 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=37.2
Q ss_pred cCCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+++..++|=-+|-|.+.+.++++|..|+++|. |-+.-.+|.-++
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence 56789999999999999999999999999999 877655555443
No 403
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=50.71 E-value=1.1e+02 Score=24.54 Aligned_cols=43 Identities=35% Similarity=0.616 Sum_probs=28.2
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
+.++++|=.|++.| +|..++ +.|++|++++. +..++.+...+.
T Consensus 7 l~~k~~lItGas~g-iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 7 LAGKNILITGSAQG-IGFLLATGLAEYGAEIIINDITAERAELAVAKLR 54 (254)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence 46788999997654 444443 45889999998 555544444443
No 404
>PRK07454 short chain dehydrogenase; Provisional
Probab=50.66 E-value=1.1e+02 Score=24.18 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=26.8
Q ss_pred CCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
+.+++|=.|+ +|.+|..+++ .|.+|++++. +...+.+.+.+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAEL 50 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4567888885 5666666554 4889999998 55444444433
No 405
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.53 E-value=1.1e+02 Score=24.04 Aligned_cols=40 Identities=35% Similarity=0.502 Sum_probs=27.0
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
+++++||=.|++ |.+|..++ +.|++|++++. +..++.+..
T Consensus 3 ~~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 3 LKGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cCCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 357889999986 44555544 34889999998 655544433
No 406
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=50.00 E-value=51 Score=28.77 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=24.0
Q ss_pred cCCCEEEEECCcc-C-HHHHHHHHcCC-EEEEEeh
Q 028335 121 LHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~ 152 (210)
++..+||=+|||. | .++..|++.|. +++.+|.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 5778999999984 4 34445666676 7999987
No 407
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=49.98 E-value=19 Score=34.13 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=26.0
Q ss_pred ccCCCEEEEECCccCHHHHHHHHc---CCEEEEEeh
Q 028335 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL 152 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la~~---g~~Vv~tD~ 152 (210)
+-++..||||||-.|.-...+++. |.-|+++|+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl 77 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDL 77 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeee
Confidence 346778999999999777777664 446999997
No 408
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=49.80 E-value=52 Score=27.53 Aligned_cols=45 Identities=31% Similarity=0.373 Sum_probs=34.5
Q ss_pred CCCEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHh
Q 028335 122 HGKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (210)
Q Consensus 122 ~~~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n 166 (210)
+-++|-=+|+|- | -++..++..|..|+..|. +++|..+++-+..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~s 57 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSS 57 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHH
Confidence 445677888885 3 345556677899999999 89999888887766
No 409
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=49.78 E-value=34 Score=24.09 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=20.9
Q ss_pred CccCHHHHHHHHc----CCEEEEEeh-HHHHHHHHH
Q 028335 131 SGCGLVGCIAALL----GAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 131 cGtGl~~l~la~~----g~~Vv~tD~-~~~l~~~~~ 161 (210)
||.|.+|..+++. +.+|+.+|. ++.++.++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~ 39 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE 39 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh
Confidence 5666777776643 448999999 777665554
No 410
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.77 E-value=62 Score=26.34 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=25.3
Q ss_pred ccCCCEEEEECCccC-HHHHHHH----HcCCEEEEEeh-HHH
Q 028335 120 LLHGKKIVELGSGCG-LVGCIAA----LLGAQVILTDL-PDR 155 (210)
Q Consensus 120 ~~~~~~VLELGcGtG-l~~l~la----~~g~~Vv~tD~-~~~ 155 (210)
.++++.+|=.|+++| -+|..++ +.|++|+.++. ...
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 357899999998752 4555444 45889999887 443
No 411
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.42 E-value=50 Score=27.96 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=28.2
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++|.=+|+|. | .++..+++.|.+|++.|. ++.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 4677788886 3 455555666889999999 77777666543
No 412
>PRK07478 short chain dehydrogenase; Provisional
Probab=49.35 E-value=1.4e+02 Score=23.99 Aligned_cols=44 Identities=32% Similarity=0.433 Sum_probs=28.8
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~~~ 165 (210)
++++++|=.|++.| +|..+ ++.|++|++++. +..++.+...+..
T Consensus 4 ~~~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 52 (254)
T PRK07478 4 LNGKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA 52 (254)
T ss_pred CCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 46778888887654 44443 345889999998 6655555554443
No 413
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.34 E-value=41 Score=28.68 Aligned_cols=41 Identities=34% Similarity=0.580 Sum_probs=28.2
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=.|+|. |...+.+++. |. .|+++|. ++..+.++
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34678899888764 6666666654 77 5999998 65555554
No 414
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=49.24 E-value=43 Score=28.18 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=28.9
Q ss_pred ccCCCEEEEECC-c-cCHHHHHHHHc-CCEEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGS-G-CGLVGCIAALL-GAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGc-G-tGl~~l~la~~-g~~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=.|+ | .|...+.+++. |++|++++. ++-.+.++
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 347889998885 3 37777767764 889999887 65555553
No 415
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=49.14 E-value=57 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=21.9
Q ss_pred CCCEEEEECCccCHHHHHHHH----cCCEEEEEeh
Q 028335 122 HGKKIVELGSGCGLVGCIAAL----LGAQVILTDL 152 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~ 152 (210)
++++||=.|+ +|.+|..+++ .|.+|++++.
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r 36 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVR 36 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4577888885 6777777664 3788988876
No 416
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=48.48 E-value=46 Score=28.17 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=28.3
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=.|+|. |...+.+++ .|++|++++. ++-++.++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 34678999999754 555555554 3889999988 66565554
No 417
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.63 E-value=1.4e+02 Score=23.79 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=27.8
Q ss_pred CCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHHH
Q 028335 122 HGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
++++||=.|+ +|.+|..+++ .|.+|++++. +...+.+...+.
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 5677887776 4666776665 3789999998 665554444443
No 418
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=47.57 E-value=42 Score=27.39 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=28.4
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCE-EEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~-Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+|. |...+.+|+ .|.+ |++++. ++.++.+++
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 34678888888765 555555554 4777 999998 666554443
No 419
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=47.07 E-value=1.5e+02 Score=24.88 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=36.5
Q ss_pred ccCCCEEEEECCccCH---HHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl---~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
.+.++.+|-=|...|+ ++..+++.|++|+.++. ++.++..+.-+...+
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~ 56 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLG 56 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 4689999999998874 45567788999999999 777766666555443
No 420
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=46.55 E-value=27 Score=30.19 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=34.0
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--CCEEEEEeh-HHHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
.++..+||.--|.|--+..+... ..++++.|. +++++.+++++.
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 46779999999999888887754 468999999 999998887765
No 421
>PRK06181 short chain dehydrogenase; Provisional
Probab=46.50 E-value=1.3e+02 Score=24.16 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=24.2
Q ss_pred CEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHH
Q 028335 124 KKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++||=.|+. |.+|..++ ..|++|++++. +...+.+.+.+
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l 45 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQEL 45 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467767754 45555544 34889999998 55544444444
No 422
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=46.37 E-value=59 Score=28.55 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=27.2
Q ss_pred CEEEEECCccCHHHHHHHHcCCEEEEEeh--HHHHHHHHHH
Q 028335 124 KKIVELGSGCGLVGCIAALLGAQVILTDL--PDRLRLLKKN 162 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~g~~Vv~tD~--~~~l~~~~~N 162 (210)
...+|+|.|.|.+.-.+...-.+|-+++. +.++..+...
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~ 219 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL 219 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh
Confidence 57899999999777776665556766666 5555544443
No 423
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=46.31 E-value=1.6e+02 Score=23.89 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=36.3
Q ss_pred cCCCEEEEECCccCHHHHH----HHHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~----la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
++++++|=.|++.|+ |.. ++..|++|+.++. ++.++.+..++...+ .++....+|..+
T Consensus 8 ~~~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 70 (265)
T PRK07097 8 LKGKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG------IEAHGYVCDVTD 70 (265)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence 478899999988654 333 3445889999988 665555555554322 234455565543
No 424
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.26 E-value=39 Score=30.56 Aligned_cols=35 Identities=40% Similarity=0.493 Sum_probs=25.2
Q ss_pred ccCCCEEEEECCcc-CHHHHHHH-HcCCEEEEEeh-HH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PD 154 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la-~~g~~Vv~tD~-~~ 154 (210)
.+.+++|+=+|+|. |......+ ..|++|+.+|. +.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 35899999999986 54333333 45889999998 54
No 425
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.15 E-value=45 Score=25.31 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=25.5
Q ss_pred EEEEECCccCHHHH--HHHHcCCEEEEEeh-HHHHHHHHHH
Q 028335 125 KIVELGSGCGLVGC--IAALLGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 125 ~VLELGcGtGl~~l--~la~~g~~Vv~tD~-~~~l~~~~~N 162 (210)
+|.=||+|.+-.++ .++..|.+|+.... ++.++.++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET 41 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 35568888743333 35566888999998 7777766665
No 426
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=46.01 E-value=63 Score=27.14 Aligned_cols=40 Identities=35% Similarity=0.397 Sum_probs=27.4
Q ss_pred CEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++|-=||+|. | .++..+++.|.+|++.|. ++.++.+++.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 47 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSI 47 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 4677788875 3 444555566889999999 77766554443
No 427
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=45.92 E-value=73 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCCEEEEECCccCHHHHHHHH----cCCEEEEEeh
Q 028335 122 HGKKIVELGSGCGLVGCIAAL----LGAQVILTDL 152 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~ 152 (210)
.+++||=.|+ +|.+|..+++ .|.+|+++..
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r 37 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVR 37 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEc
Confidence 4678888884 6777777664 3788887765
No 428
>PRK06720 hypothetical protein; Provisional
Probab=45.77 E-value=1.4e+02 Score=23.03 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=27.5
Q ss_pred cCCCEEEEECCccCH---HHHHHHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl---~~l~la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++.+|=-|++.|+ +...+++.|++|+.+|. ...+..+.+.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l 60 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI 60 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 467888888887654 22234456889999998 55544443333
No 429
>PRK06057 short chain dehydrogenase; Provisional
Probab=45.62 E-value=67 Score=25.87 Aligned_cols=35 Identities=37% Similarity=0.620 Sum_probs=24.8
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRL 156 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l 156 (210)
+++++||=.|+..| +|..++ +.|++|+++|. +..+
T Consensus 5 ~~~~~vlItGasgg-IG~~~a~~l~~~G~~v~~~~r~~~~~ 44 (255)
T PRK06057 5 LAGRVAVITGGGSG-IGLATARRLAAEGATVVVGDIDPEAG 44 (255)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 57889999999644 455444 45889999987 5443
No 430
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.45 E-value=46 Score=30.43 Aligned_cols=37 Identities=35% Similarity=0.490 Sum_probs=27.1
Q ss_pred ccCCCEEEEECCcc-CHHHHHHH-HcCCEEEEEeh-HHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PDRL 156 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la-~~g~~Vv~tD~-~~~l 156 (210)
...+++|+=+|.|- |+..+.++ ..|++|+++|. +..+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~ 48 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL 48 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 45788999999985 66555444 46899999998 5443
No 431
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=45.31 E-value=46 Score=29.42 Aligned_cols=42 Identities=38% Similarity=0.558 Sum_probs=27.5
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCE-EEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~-Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+|. |+..+.+++ .|++ |+.+|. ++.++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS 228 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 34677777788876 766666665 4776 666777 655655543
No 432
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=44.68 E-value=53 Score=27.43 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=28.5
Q ss_pred ccCCCEEEEECC-c-cCHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGc-G-tGl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+ | .|...+.+++ .|++|++++. ++-.+.+++
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 346789998885 3 3666666665 4889998887 665555543
No 433
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=44.52 E-value=60 Score=29.96 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=32.0
Q ss_pred CCEEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHHHHH
Q 028335 123 GKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (210)
Q Consensus 123 ~~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~ 164 (210)
-++|-=||+|+ | -++..+++.|..|+..|. ++.++.+++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~ 51 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIA 51 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 35688889986 4 466667778999999999 888777665554
No 434
>PRK07109 short chain dehydrogenase; Provisional
Probab=44.46 E-value=1.6e+02 Score=25.16 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=36.0
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
+++++||=.|++.| +|..+ ++.|++|++++. ++.++.+.+.+...+ .++.+...|..+
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g------~~~~~v~~Dv~d 68 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG------GEALAVVADVAD 68 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEecCCC
Confidence 46778898887654 44443 445889999998 666666655554332 234445555443
No 435
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=44.06 E-value=54 Score=27.79 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=29.0
Q ss_pred ccCCCEEEEECC-c-cCHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGc-G-tGl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+ | .|...+.+++ +|++|++++. ++-.+.+++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 457889999987 3 3666666665 4889988876 665555544
No 436
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=43.95 E-value=53 Score=28.36 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=24.9
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CCEEEEEeh-HHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GAQVILTDL-PDRL 156 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~~Vv~tD~-~~~l 156 (210)
.++.+||=.|+|. |.+.+.+++. |+++++++. ++..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~ 217 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKR 217 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 3678888888765 6666666654 778887776 5443
No 437
>PRK07791 short chain dehydrogenase; Provisional
Probab=43.91 E-value=1.4e+02 Score=24.78 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=22.8
Q ss_pred cCCCEEEEECCccCHHHH---HHHHcCCEEEEEeh
Q 028335 121 LHGKKIVELGSGCGLVGC---IAALLGAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l---~la~~g~~Vv~tD~ 152 (210)
++++++|=.|++.|+-.. .+++.|++|+.+|.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~ 38 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI 38 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeC
Confidence 578899999988764322 24456889988876
No 438
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=43.76 E-value=48 Score=27.63 Aligned_cols=37 Identities=38% Similarity=0.514 Sum_probs=25.7
Q ss_pred EEEEECCcc-C-HHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 125 ~VLELGcGt-G-l~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
+|+=+|+|. | .++..+++.|.+|++++. ++.++.+++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence 577789886 3 455556666889999998 665554443
No 439
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=43.61 E-value=57 Score=28.34 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=26.4
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLL 159 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~ 159 (210)
..++.+||=.|+|. |...+.+++ +|+ +|+.+|. ++.++.+
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a 231 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA 231 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 34677888888754 555555554 477 7999987 6555544
No 440
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.55 E-value=1.1e+02 Score=27.20 Aligned_cols=30 Identities=53% Similarity=0.771 Sum_probs=22.9
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~ 152 (210)
+++++|+=+|+|. .|+.+| +.|++|+++|.
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDE 36 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeC
Confidence 4678999999876 444444 45999999999
No 441
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=43.52 E-value=1.7e+02 Score=23.87 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=27.7
Q ss_pred cCCCEEEEECCccCHHHHH----HHHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~----la~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++++|=.|++.| +|.. +++.|++|++++. .+.++.+.+.+
T Consensus 8 ~~~k~vlVtGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 54 (278)
T PRK08277 8 LKGKVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVAEI 54 (278)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46788998888655 3333 3345889999998 55554444444
No 442
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=43.46 E-value=50 Score=30.66 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=24.5
Q ss_pred cCCCEEEEECCcc-CHHHHHHH-HcCCEEEEEeh
Q 028335 121 LHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la-~~g~~Vv~tD~ 152 (210)
..+++|+=+|+|. |+.....+ +.|++|+.+|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4688999999997 66555443 56889999994
No 443
>PRK12939 short chain dehydrogenase; Provisional
Probab=43.00 E-value=1.7e+02 Score=23.17 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=27.6
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
.+++++|=.|+ +|.+|..+++ .|++|++++. ++.+..+...+
T Consensus 5 ~~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (250)
T PRK12939 5 LAGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL 51 (250)
T ss_pred CCCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 46788997776 4556666553 4889999987 55554444443
No 444
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=42.84 E-value=27 Score=29.49 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=26.2
Q ss_pred CEEEEECCccC--HHHHHHHHc---CCEEEEEeh-HHHHHHHHHHHHHhc
Q 028335 124 KKIVELGSGCG--LVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNL 167 (210)
Q Consensus 124 ~~VLELGcGtG--l~~l~la~~---g~~Vv~tD~-~~~l~~~~~N~~~n~ 167 (210)
...||||||.- -..-..|+. .++|+-+|. +-++..++.-+..|.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~ 119 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP 119 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC
Confidence 47999999952 122234433 679999999 888877777666553
No 445
>PRK05650 short chain dehydrogenase; Provisional
Probab=42.63 E-value=1.7e+02 Score=23.77 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=30.0
Q ss_pred EEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 125 KIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 125 ~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
+||=.|+. |.+|..++ +.|++|++++. ...++.+...+...+ .++.+...|..+
T Consensus 2 ~vlVtGas-ggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMITGAA-SGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRD 60 (270)
T ss_pred EEEEecCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence 56767764 44555544 45889999988 554444444443322 234455555543
No 446
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=41.90 E-value=2.1e+02 Score=25.43 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=45.8
Q ss_pred EEEeccHHHHHHHHhhhhhcCccccCCCEEEEECCccCHHHHHHHHcCCEEEEEehHHHHHHHHHHHHHhccC
Q 028335 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRH 169 (210)
Q Consensus 97 ~~~W~aa~~la~~L~~~~~~~~~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~~~~l~~~~~N~~~n~~~ 169 (210)
.+-|+++- +||.++.... ... .+|+=|+=.-|.++..++..+.. ..+|---.-..++.|++.|++.
T Consensus 25 l~awdaad---e~ll~~~~~~--~~~-~~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~~~~~~~n~~~n~~~ 90 (378)
T PRK15001 25 LQAWEAAD---EYLLQQLDDT--EIR-GPVLILNDAFGALSCALAEHKPY-SIGDSYISELATRENLRLNGID 90 (378)
T ss_pred ccccccHH---HHHHHHHhhc--ccC-CCEEEEcCchhHHHHHHHhCCCC-eeehHHHHHHHHHHHHHHcCCC
Confidence 67799986 4665543221 112 37999999999999999865553 3367655556789999999865
No 447
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=41.84 E-value=58 Score=27.46 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=27.2
Q ss_pred CCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHHH
Q 028335 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 122 ~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~~ 160 (210)
++.+||-.|||. |...+.+++ .|. ++++++. +...+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 788899888765 555555554 477 7999988 66655443
No 448
>PRK07677 short chain dehydrogenase; Provisional
Probab=41.81 E-value=1.8e+02 Score=23.25 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=24.9
Q ss_pred CCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHHH
Q 028335 123 GKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNI 163 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N~ 163 (210)
++++|=.|++.| +|..+ ++.|++|++++. ...++.+...+
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 357887888655 44433 345889999988 55554444443
No 449
>PRK08589 short chain dehydrogenase; Validated
Probab=41.66 E-value=1.9e+02 Score=23.63 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=22.9
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEehH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDLP 153 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~~ 153 (210)
++++++|=.|++.| +|..+ ++.|++|++++..
T Consensus 4 l~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 4 LENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc
Confidence 46788998888765 34443 4458899999884
No 450
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=41.56 E-value=66 Score=27.08 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=29.4
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-c-CCEEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-L-GAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~-g~~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=.|+|. |...+.+++ . |++|++++. ++..+.++
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~ 204 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK 204 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Confidence 34678899899764 666666676 3 889999987 66666553
No 451
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=41.33 E-value=67 Score=26.93 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=27.8
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHHc-CCEEEEEeh-HHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAALL-GAQVILTDL-PDRLRLL 159 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~~-g~~Vv~tD~-~~~l~~~ 159 (210)
..++.+||-+|+|. |...+.+++. |.+|+.++. ++.++.+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA 202 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 34677898898874 6555555543 889999887 6665555
No 452
>PRK06914 short chain dehydrogenase; Provisional
Probab=41.31 E-value=1.9e+02 Score=23.48 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 122 HGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
.++++|=.|++. .+|..++ ..|++|++++. ++.++.+...+...+.. .++.+...|..+
T Consensus 2 ~~k~~lItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~d 65 (280)
T PRK06914 2 NKKIAIVTGASS-GFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQ----QNIKVQQLDVTD 65 (280)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CceeEEecCCCC
Confidence 356788888654 4455443 45889999987 65554444433322211 235555555544
No 453
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.85 E-value=54 Score=27.22 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=26.4
Q ss_pred CCCEEEEECCccCHHHHHHHHc----CCEEEEEeh
Q 028335 122 HGKKIVELGSGCGLVGCIAALL----GAQVILTDL 152 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~----g~~Vv~tD~ 152 (210)
..+.||=-||..|-+|.++++. |..|++|-.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR 40 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATAR 40 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcc
Confidence 4678999999999999988864 889999976
No 454
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=40.83 E-value=21 Score=32.01 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=25.0
Q ss_pred CEEEEECCcc-CHHH-HHHHHcCCEEEEEeh-HHHHHHH
Q 028335 124 KKIVELGSGC-GLVG-CIAALLGAQVILTDL-PDRLRLL 159 (210)
Q Consensus 124 ~~VLELGcGt-Gl~~-l~la~~g~~Vv~tD~-~~~l~~~ 159 (210)
.+|-=+|=|. |++. +.+|+.|.+|++.|+ +..++.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~l 48 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKL 48 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHH
Confidence 4666676665 6543 345667899999999 7776654
No 455
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.49 E-value=1.8e+02 Score=24.47 Aligned_cols=33 Identities=39% Similarity=0.457 Sum_probs=23.5
Q ss_pred ccCCCEEEEECCccCHH---HHHHHHcCCEEEEEeh
Q 028335 120 LLHGKKIVELGSGCGLV---GCIAALLGAQVILTDL 152 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~---~l~la~~g~~Vv~tD~ 152 (210)
.++++++|=.|++.|+- +..+++.|++|+.+|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~ 44 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDV 44 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 46788999999886642 2234455889999886
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=39.88 E-value=74 Score=27.07 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=27.3
Q ss_pred ccCCCEEEEECCcc-CHHHHHHH-HcCCEEEEEeh-HHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PDRLRLL 159 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la-~~g~~Vv~tD~-~~~l~~~ 159 (210)
.+.+++|+=||+|. |...+..+ .+|++|+.+|. +.....+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI 191 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 35789999999985 44433333 35889999999 6554433
No 457
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=39.53 E-value=74 Score=26.56 Aligned_cols=42 Identities=29% Similarity=0.504 Sum_probs=27.8
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+|. |...+.+++ +|++|++++. ++..+.+++
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34678888887653 444444443 4889999987 776666665
No 458
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=39.50 E-value=72 Score=26.88 Aligned_cols=41 Identities=39% Similarity=0.641 Sum_probs=26.6
Q ss_pred cCCCEEEEECCcc-CHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
.++.+||-.|+|. |...+.+++. |. ++++++. +...+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 4677888888753 6565656654 75 7888877 555554443
No 459
>PRK07904 short chain dehydrogenase; Provisional
Probab=39.40 E-value=1.7e+02 Score=23.65 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=41.6
Q ss_pred CCCEEEEECCccCHHHHHHH----HcC-CEEEEEeh-HHH-HHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC------
Q 028335 122 HGKKIVELGSGCGLVGCIAA----LLG-AQVILTDL-PDR-LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD------ 188 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la----~~g-~~Vv~tD~-~~~-l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~------ 188 (210)
.+++||=.|++.| +|..++ +.| ++|++++. ++. ++.+.+.+..++. .++.+..+|..+...
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-----~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-----SSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-----CceEEEEecCCChHHHHHHHH
Confidence 5678999999654 555544 344 79999987 543 5555444444321 135666666544321
Q ss_pred CCccCCCCcEEEE
Q 028335 189 QDLIQPLPDYGNE 201 (210)
Q Consensus 189 ~~~~~~~fD~Iia 201 (210)
......+.|++|.
T Consensus 81 ~~~~~g~id~li~ 93 (253)
T PRK07904 81 AAFAGGDVDVAIV 93 (253)
T ss_pred HHHhcCCCCEEEE
Confidence 1111246787664
No 460
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=39.38 E-value=68 Score=27.44 Aligned_cols=38 Identities=45% Similarity=0.640 Sum_probs=25.9
Q ss_pred CCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHH
Q 028335 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLL 159 (210)
Q Consensus 122 ~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~ 159 (210)
++.+||=.|+|. |...+.+++ .|+ +|++++. ++-.+.+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 677888888764 555555554 488 8999987 5554444
No 461
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=39.36 E-value=2e+02 Score=23.04 Aligned_cols=41 Identities=32% Similarity=0.521 Sum_probs=27.3
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh-HHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKN 162 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~-~~~l~~~~~N 162 (210)
+.+++||=.|++.| +|..+ +..|++++.++. ...++.+...
T Consensus 9 l~~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~ 54 (255)
T PRK06113 9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDE 54 (255)
T ss_pred cCCCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 46889999997655 44443 345889999987 5555444333
No 462
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=39.34 E-value=2e+02 Score=23.04 Aligned_cols=31 Identities=39% Similarity=0.538 Sum_probs=22.3
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEeh
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~ 152 (210)
++++++|=.|++.| +|..+ ++.|++|+.+|.
T Consensus 6 ~~~k~vlVtGas~g-IG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 6 FAGKVVVVTGAAQG-IGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeC
Confidence 56788999997654 44443 345889999998
No 463
>PRK05872 short chain dehydrogenase; Provisional
Probab=39.25 E-value=1.2e+02 Score=25.22 Aligned_cols=41 Identities=37% Similarity=0.485 Sum_probs=27.4
Q ss_pred ccCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
.++++++|=.|++.| +|..++ +.|++|++++. .+.++.+.+
T Consensus 6 ~l~gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~ 51 (296)
T PRK05872 6 SLAGKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAA 51 (296)
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 357889998887654 444443 45889999998 655544433
No 464
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=39.14 E-value=1.6e+02 Score=24.48 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=25.2
Q ss_pred CCCEEEEECC-cc-CHHHHHHHH-cCCEEEEEeh-HHHHHHH
Q 028335 122 HGKKIVELGS-GC-GLVGCIAAL-LGAQVILTDL-PDRLRLL 159 (210)
Q Consensus 122 ~~~~VLELGc-Gt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~ 159 (210)
.+.+||=.|+ |. |...+.+|+ .|++|++++. ++..+.+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL 187 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 3568988888 33 555555554 4889998887 5554444
No 465
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=39.10 E-value=70 Score=27.05 Aligned_cols=38 Identities=29% Similarity=0.459 Sum_probs=26.8
Q ss_pred CEEEEECC-c-cCHHHHHHHHc-CC-EEEEEeh-HHHHHHHHH
Q 028335 124 KKIVELGS-G-CGLVGCIAALL-GA-QVILTDL-PDRLRLLKK 161 (210)
Q Consensus 124 ~~VLELGc-G-tGl~~l~la~~-g~-~Vv~tD~-~~~l~~~~~ 161 (210)
.+||=.|+ | .|...+.+++. |+ +|++++. ++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 78998987 3 37777767754 87 7999987 655555544
No 466
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=38.97 E-value=51 Score=28.81 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHH
Q 028335 123 GKKIVELGSGCGLVGCIAALLGAQVILTDL-PDR 155 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~ 155 (210)
.-+||-=|||.|.++.-++..|.++-+-+. --|
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~M 184 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFM 184 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHH
Confidence 458999999999999999999998888777 344
No 467
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=38.82 E-value=38 Score=30.30 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=26.3
Q ss_pred ccCCCEEEEECCcc-C-HHHHHHHHcCCEEEEEeh
Q 028335 120 LLHGKKIVELGSGC-G-LVGCIAALLGAQVILTDL 152 (210)
Q Consensus 120 ~~~~~~VLELGcGt-G-l~~l~la~~g~~Vv~tD~ 152 (210)
.+.|-+||||+... | +.+..||.+|++||=++.
T Consensus 11 pL~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~ 45 (405)
T PRK03525 11 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIEN 45 (405)
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHcCCcEEEECC
Confidence 36888999998775 4 677788888998888885
No 468
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.75 E-value=72 Score=24.65 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=32.3
Q ss_pred cHHHHHHHHhhhhhcCccccCCC-EEEEECCcc-CHHHHHHHHc----CCEEEE--Eeh-HHHHHHHHHHHHH
Q 028335 102 SGVVLGKFLEHAVDSGMLLLHGK-KIVELGSGC-GLVGCIAALL----GAQVIL--TDL-PDRLRLLKKNIEN 165 (210)
Q Consensus 102 aa~~la~~L~~~~~~~~~~~~~~-~VLELGcGt-Gl~~l~la~~----g~~Vv~--tD~-~~~l~~~~~N~~~ 165 (210)
++..+++++.+... ..+.+ .++=.|.|. |--|+.+|++ |.+|+. ... +..-+..+.+.+.
T Consensus 8 Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~ 76 (169)
T PF03853_consen 8 AGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEI 76 (169)
T ss_dssp HHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHH
Confidence 56777888876531 12334 445566665 7777777764 776544 433 3333444555443
No 469
>PRK10083 putative oxidoreductase; Provisional
Probab=38.51 E-value=72 Score=26.89 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=28.7
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-c-CCE-EEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-L-GAQ-VILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~-g~~-Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+|. |...+.+++ . |++ ++++|. ++..+.+++
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 34678888899765 666666666 3 875 888887 665555543
No 470
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=38.40 E-value=81 Score=27.46 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=28.7
Q ss_pred ccCCCEEEEECC-cc-CHHHHHHHH-cCCEEEEEeh-HHHHHHHHH
Q 028335 120 LLHGKKIVELGS-GC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 120 ~~~~~~VLELGc-Gt-Gl~~l~la~-~g~~Vv~tD~-~~~l~~~~~ 161 (210)
..++.+||=.|+ |. |...+.+++ .|+++++++. ++-.+.+++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 346789999997 43 666666665 4888888887 665555543
No 471
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=38.33 E-value=37 Score=28.93 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.2
Q ss_pred CCCEEEEECCccCHHHH
Q 028335 122 HGKKIVELGSGCGLVGC 138 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l 138 (210)
....|-|+|||-+-++.
T Consensus 180 ~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS 196 (325)
T ss_pred CceEEEecccchhhhhh
Confidence 44578899999987764
No 472
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=38.25 E-value=1.4e+02 Score=25.87 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=31.8
Q ss_pred CCEEEEECCccC--HHHHHHHH----c--------C--------CEEEEEeh-H--HHHHHHHHHHHHh
Q 028335 123 GKKIVELGSGCG--LVGCIAAL----L--------G--------AQVILTDL-P--DRLRLLKKNIENN 166 (210)
Q Consensus 123 ~~~VLELGcGtG--l~~l~la~----~--------g--------~~Vv~tD~-~--~~l~~~~~N~~~n 166 (210)
..+||-+|-|.| +++++.+- . + .+++++|+ + .+++.+...+..+
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~ 155 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSP 155 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCC
Confidence 469999999996 55555433 0 1 27999999 3 5788888887766
No 473
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=38.13 E-value=30 Score=29.02 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=24.9
Q ss_pred ccCCCEEEEECCcc-CHHHH-HHHHcCC-EEEEEehH
Q 028335 120 LLHGKKIVELGSGC-GLVGC-IAALLGA-QVILTDLP 153 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l-~la~~g~-~Vv~tD~~ 153 (210)
.++..+|+=+|+|- |...+ +|++.|. +++.+|..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 46788999999995 65555 4556665 78888873
No 474
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=37.82 E-value=1.3e+02 Score=25.02 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=35.9
Q ss_pred CEEEEECCccCHHHHHHHHc-CCEEEEEehHHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 028335 124 KKIVELGSGCGLVGCIAALL-GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (210)
Q Consensus 124 ~~VLELGcGtGl~~l~la~~-g~~Vv~tD~~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w 183 (210)
..|+.||||-=.-+..+... +.+++=+|.++++..-++-+..++... ..+......+.
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~--~~~~~~v~~Dl 141 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEP--PAHRRAVPVDL 141 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCC--CCceEEeccCc
Confidence 46999999875555554322 456777788888887777776654321 23444444443
No 475
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=37.74 E-value=1.1e+02 Score=24.63 Aligned_cols=37 Identities=38% Similarity=0.597 Sum_probs=24.4
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRL 158 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~ 158 (210)
+.++++|=.|+. |.+|..++ +.|++|+++|. ...++.
T Consensus 4 l~~~~vlItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~ 45 (257)
T PRK07067 4 LQGKVALLTGAA-SGIGEAVAERYLAEGARVVIADIKPARARL 45 (257)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 357788888855 44555554 34889999988 554433
No 476
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=37.73 E-value=2.1e+02 Score=22.87 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHH
Q 028335 123 GKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLK 160 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~ 160 (210)
+++||=.|++ |.+|..++ ..|++|+++|. ...++.+.
T Consensus 2 ~k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 43 (259)
T PRK12384 2 NQVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVA 43 (259)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4578888865 44555444 45889999998 55444333
No 477
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=37.70 E-value=63 Score=28.71 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=22.6
Q ss_pred EEEECCcc-CHHHHHHHHcCCEEEEEeh-HHHHHHHHH
Q 028335 126 IVELGSGC-GLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 126 VLELGcGt-Gl~~l~la~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
|-=+|.|. |+....+...|.+|++.|. ++.++.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 44566664 5332222224888999999 777776655
No 478
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=37.67 E-value=79 Score=27.53 Aligned_cols=41 Identities=34% Similarity=0.463 Sum_probs=26.7
Q ss_pred ccCCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHHH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~~ 160 (210)
..++.+||=.|+|. |...+.+++ .|+ +|++++. ++..+.++
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~ 245 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK 245 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 44677888788765 555555554 377 7999987 55444443
No 479
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=37.28 E-value=80 Score=27.22 Aligned_cols=40 Identities=38% Similarity=0.610 Sum_probs=26.9
Q ss_pred cCCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHHH
Q 028335 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (210)
Q Consensus 121 ~~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~~ 160 (210)
.++++||=.|+|. |...+.+++ .|+ .|+++|. +.-.+.++
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4678888888764 665555665 477 5999988 65554443
No 480
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=36.92 E-value=13 Score=26.37 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=8.8
Q ss_pred EEEECCccCHH
Q 028335 126 IVELGSGCGLV 136 (210)
Q Consensus 126 VLELGcGtGl~ 136 (210)
=+|+|||.|-.
T Consensus 6 NIDIGcG~GNT 16 (124)
T PF07101_consen 6 NIDIGCGAGNT 16 (124)
T ss_pred ccccccCCCcc
Confidence 47999999854
No 481
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=36.89 E-value=52 Score=27.99 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.8
Q ss_pred CCEEEEECCcc--CHHHHHHHHcCCEEEEEeh
Q 028335 123 GKKIVELGSGC--GLVGCIAALLGAQVILTDL 152 (210)
Q Consensus 123 ~~~VLELGcGt--Gl~~l~la~~g~~Vv~tD~ 152 (210)
.++|+=+|+|. |.++..+++.|.+|+....
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 45799999986 4677777777888888877
No 482
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=36.83 E-value=1.2e+02 Score=24.60 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=25.6
Q ss_pred cCCCEEEEECCccCHHHHH----HHHcCCEEEEEeh-HHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLL 159 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~----la~~g~~Vv~tD~-~~~l~~~ 159 (210)
++++++|=.|++.| +|.. ++..|++|++++. ++.++.+
T Consensus 4 ~~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 4 LHGQVALITGGGSG-IGRALVERFLAEGARVAVLERSAEKLASL 46 (263)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46788999998655 3444 3445889999998 5544433
No 483
>PRK06114 short chain dehydrogenase; Provisional
Probab=36.63 E-value=2.2e+02 Score=22.79 Aligned_cols=43 Identities=40% Similarity=0.556 Sum_probs=27.3
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-H-HHHHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-P-DRLRLLKKNIE 164 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~-~~l~~~~~N~~ 164 (210)
++++++|=.|++.| +|..+++ .|++|+.++. . ..++.+.+.+.
T Consensus 6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~ 54 (254)
T PRK06114 6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIE 54 (254)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH
Confidence 47888998886554 5555543 4889999987 3 33444444443
No 484
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=36.55 E-value=67 Score=29.45 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=24.7
Q ss_pred CEEEEECCcc-C-HHHHHHHHcC--CEEEEEeh-HHHHHHHHH
Q 028335 124 KKIVELGSGC-G-LVGCIAALLG--AQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 124 ~~VLELGcGt-G-l~~l~la~~g--~~Vv~tD~-~~~l~~~~~ 161 (210)
++|.=+|+|. | .++..+|..| .+|+++|. ++.++.+++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 3567778776 4 3334455554 67999999 777766543
No 485
>PRK06194 hypothetical protein; Provisional
Probab=36.50 E-value=2.2e+02 Score=23.25 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=25.8
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKK 161 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~~~ 161 (210)
++++++|=.|++ |.+|..++ +.|++|+++|. ...++....
T Consensus 4 ~~~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (287)
T PRK06194 4 FAGKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVA 48 (287)
T ss_pred CCCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 356788877765 44555544 45889999998 555444333
No 486
>PRK06196 oxidoreductase; Provisional
Probab=36.48 E-value=1.2e+02 Score=25.51 Aligned_cols=36 Identities=33% Similarity=0.414 Sum_probs=25.1
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh-HHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLR 157 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~-~~~l~ 157 (210)
+.+++||=.|++ |.+|..+++ .|++|++++. ++.++
T Consensus 24 l~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~ 64 (315)
T PRK06196 24 LSGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAR 64 (315)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 467889989975 445665554 4889999987 55443
No 487
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.30 E-value=96 Score=27.97 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=23.7
Q ss_pred cCCCEEEEECCccCHHHH--HHHHcCCEEEEEeh
Q 028335 121 LHGKKIVELGSGCGLVGC--IAALLGAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l--~la~~g~~Vv~tD~ 152 (210)
+.+++|+=+|.|..-.++ .|.+.|++|+++|.
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECC
Confidence 457889999988632244 45567999999997
No 488
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.10 E-value=2.2e+02 Score=22.82 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=22.9
Q ss_pred cCCCEEEEECCccCHHHHHH----HHcCCEEEEEehH
Q 028335 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDLP 153 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~l----a~~g~~Vv~tD~~ 153 (210)
+++++||=.|++.| +|..+ ++.|++|+.++..
T Consensus 13 l~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 13 LDGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC
Confidence 57889999999765 34443 4458898888763
No 489
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=35.88 E-value=86 Score=26.62 Aligned_cols=38 Identities=26% Similarity=0.497 Sum_probs=25.5
Q ss_pred CCCEEEEECCcc-CHHHHHHHH-cCC-EEEEEeh-HHHHHHH
Q 028335 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLL 159 (210)
Q Consensus 122 ~~~~VLELGcGt-Gl~~l~la~-~g~-~Vv~tD~-~~~l~~~ 159 (210)
++.+||=+|+|. |...+.+|+ .|+ +|++++. ++..+.+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 216 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAA 216 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 678888888764 555555554 377 6888887 5555444
No 490
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=35.86 E-value=8.2 Score=32.54 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=39.5
Q ss_pred CCCEEEEECCccCHHHHHHHHcCCEEEEEeh-HHHHHHHHHHHHHhccC
Q 028335 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH 169 (210)
Q Consensus 122 ~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~-~~~l~~~~~N~~~n~~~ 169 (210)
...+.|.++-|+|++++.......-+++++. ...+....+|+..++..
T Consensus 185 ~~~~lL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n~~ 233 (262)
T KOG2497|consen 185 TLMTLLLRWRGTGLLTLLTIALESIVVFTSVDTKSLLSVYENFRLNNVD 233 (262)
T ss_pred HHHHHHHhccccchhhhhhhcccceEEEeehhhhhhhhhhhhhhhhccc
Confidence 3457889999999999999999988999999 67777788888776543
No 491
>PLN02253 xanthoxin dehydrogenase
Probab=35.80 E-value=1.2e+02 Score=24.68 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=25.0
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRL 158 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~ 158 (210)
+.++++|=.|++ |.+|..++ +.|++|+++|. ....+.
T Consensus 16 l~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~ 57 (280)
T PLN02253 16 LLGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQN 57 (280)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 467889988865 44455544 45889999988 554433
No 492
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=35.61 E-value=45 Score=28.51 Aligned_cols=35 Identities=23% Similarity=0.065 Sum_probs=31.3
Q ss_pred cccCCCEEEEECCccCHHHHHHHHcCCEEEEEehH
Q 028335 119 LLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLP 153 (210)
Q Consensus 119 ~~~~~~~VLELGcGtGl~~l~la~~g~~Vv~tD~~ 153 (210)
.+.+++..+|||+-.|--...+.+++..|+++|-.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng 242 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNG 242 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcceEEEEeccc
Confidence 35688999999999998889999999999999983
No 493
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=34.81 E-value=2.3e+02 Score=22.42 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=21.6
Q ss_pred cCCCEEEEECCccCHHHHHHHH----cCCEEEEEeh
Q 028335 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL 152 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~----~g~~Vv~tD~ 152 (210)
++++++|=.|+ +|.+|..+++ .|++|+++..
T Consensus 4 ~~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~ 38 (247)
T PRK12935 4 LNGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYN 38 (247)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcC
Confidence 35788999995 5667776654 4788877543
No 494
>PLN02494 adenosylhomocysteinase
Probab=34.77 E-value=79 Score=29.09 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=25.1
Q ss_pred ccCCCEEEEECCcc-CHHHHHHH-HcCCEEEEEeh-HH
Q 028335 120 LLHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PD 154 (210)
Q Consensus 120 ~~~~~~VLELGcGt-Gl~~l~la-~~g~~Vv~tD~-~~ 154 (210)
.+.+++|+=+|+|. |......+ ..|++|+.+|. +.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999986 53333333 35889999988 53
No 495
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=34.15 E-value=1.3e+02 Score=24.30 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=25.3
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHHH
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLL 159 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~~ 159 (210)
++++++|=.|++.| +|..++ +.|++|++++. .+.++.+
T Consensus 3 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 3 LKGEVVLVTGGASG-LGRAIVDRFVAEGARVAVLDKSAAGLQEL 45 (262)
T ss_pred cCCcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36788888887654 454444 45889999988 5544433
No 496
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.12 E-value=2.3e+02 Score=22.23 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=33.7
Q ss_pred cCCCEEEEECCccCHHHHHHH----HcCCEEEEE-eh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILT-DL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la----~~g~~Vv~t-D~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~ 185 (210)
+.++++|=.|+ +|.+|..++ +.|++|+.+ +. +..++.+...+...+ ..+.+...|..+
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 66 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG------GDAIAVKADVSS 66 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence 45678888886 566666554 348888888 87 555444444443321 235555566544
No 497
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=34.11 E-value=50 Score=26.74 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=22.7
Q ss_pred EEEEECCcc-CHHHHHHHHcCCEEEEEehH
Q 028335 125 KIVELGSGC-GLVGCIAALLGAQVILTDLP 153 (210)
Q Consensus 125 ~VLELGcGt-Gl~~l~la~~g~~Vv~tD~~ 153 (210)
.|+|.|||. ..+.-++-+.|++++.++-+
T Consensus 5 ~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~ 34 (204)
T COG0118 5 AIIDYGSGNLRSVKKALERLGAEVVVSRDP 34 (204)
T ss_pred EEEEcCcchHHHHHHHHHHcCCeeEEecCH
Confidence 589999997 66666777889988888763
No 498
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=34.04 E-value=42 Score=30.74 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=44.7
Q ss_pred cCCCEEEEECCccCHHHHHHHHc--C--CEEEEEeh-HHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCccCCC
Q 028335 121 LHGKKIVELGSGCGLVGCIAALL--G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (210)
Q Consensus 121 ~~~~~VLELGcGtGl~~l~la~~--g--~~Vv~tD~-~~~l~~~~~N~~~n~~~~~~~~~~~~~~l~w~~~~~~~~~~~~ 195 (210)
+....++|+|+|.|.-+-++..+ + ..+..+|. ..|+.....|... +.++ +.+.+..+-+-+..........
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~---g~~~v~~~~~~r~~~pi~~~~~ 274 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI---GEPIVRKLVFHRQRLPIDIKNG 274 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc---CchhccccchhcccCCCCcccc
Confidence 45557888999987444333332 2 25899999 6777766666544 1111 1111111111122222223346
Q ss_pred CcEEEEcceeee
Q 028335 196 PDYGNESLLLFL 207 (210)
Q Consensus 196 fD~Iia~DviY~ 207 (210)
||+||++-.+..
T Consensus 275 yDlvi~ah~l~~ 286 (491)
T KOG2539|consen 275 YDLVICAHKLHE 286 (491)
T ss_pred eeeEEeeeeeec
Confidence 999999977654
No 499
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=34.04 E-value=51 Score=24.17 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=21.1
Q ss_pred CCEEEEECCcc-C-HHHHHHHHcCC-EEEEEeh
Q 028335 123 GKKIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (210)
Q Consensus 123 ~~~VLELGcGt-G-l~~l~la~~g~-~Vv~tD~ 152 (210)
.++|+=+|||. | .+...|++.|. +++.+|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 56899999985 5 45555667776 6888875
No 500
>PRK05993 short chain dehydrogenase; Provisional
Probab=33.89 E-value=1.2e+02 Score=24.89 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=23.3
Q ss_pred CCEEEEECCccCHHHHHHH----HcCCEEEEEeh-HHHHHH
Q 028335 123 GKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRL 158 (210)
Q Consensus 123 ~~~VLELGcGtGl~~l~la----~~g~~Vv~tD~-~~~l~~ 158 (210)
+++||=.|++ |.+|..++ +.|++|++++. ++.++.
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAA 43 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 5678888875 44555544 34889999988 555443
Done!