BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028336
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5I137|PTPJ4_MDBVW Probable tyrosine phosphatase protein J4 OS=Microplitis demolitor
bracovirus (isolate Webb) GN=J5 PE=3 SV=1
Length = 299
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 47 LIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDIS 106
L P+N +N+K S F NV K + S DS +F +A + + + +
Sbjct: 68 LCLPKN-----VNQKTDSAFCSVDGYNVKNKFLCTRSPNQDSLYQFWSMAYKKNIHIIVM 122
Query: 107 YRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
P++ + R LE E + E+ +T+ +FYI L+++H
Sbjct: 123 LSPIDNLMRHRYWSLEEDEVFECREFRIETLQVDVQAFYITTTLQLKH 170
>sp|P47539|FTSY_MYCGE Signal recognition particle receptor FtsY OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ftsY PE=3
SV=1
Length = 346
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 41 EVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEY-DSDEEFDELACFR 99
EV K+ L + N + KK ++ F+ K I+ S+ Y + DE+F E F
Sbjct: 24 EVEKQSLFQTNNKTYYQGLKKSATTFA---------KTINELSKRYVNVDEQFKE-NLFE 73
Query: 100 GLVL-DISYRPVNVVC 114
GLVL D+ Y N +C
Sbjct: 74 GLVLLDVGYHAANKIC 89
>sp|Q87HS0|DDL_VIBPA D-alanine--D-alanine ligase OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=ddl PE=3 SV=1
Length = 329
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 155 LLQVVK--RRRIKNN---LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRG 201
L+Q VK R IKN + L+Y D T Q CS+ N TID +VP G
Sbjct: 32 LIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKQLCSNESNQTIDFIVPCIHG 83
>sp|Q96MH2|HEXI2_HUMAN Protein HEXIM2 OS=Homo sapiens GN=HEXIM2 PE=1 SV=1
Length = 286
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 26 RDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEE 85
RD Q + S +R K + + P N MN + + ++D +S G SGESE
Sbjct: 116 RDERQSQRASRVREEMFAKGQPVAPYNTTQFLMNDRDPEEPNLDVPHGISHPGSSGESEA 175
Query: 86 YDSD 89
DSD
Sbjct: 176 GDSD 179
>sp|Q5AHB8|YNG2_CANAL Chromatin modification-related protein YNG2 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=YNG2 PE=3 SV=2
Length = 298
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 124 MEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQY 183
M+ + VLE Y Q +++ +P L VRHLL+ +K + ++ + +RK RD+ ++
Sbjct: 1 MDTSTVLEKYTQDLSN------LP--LEVRHLLEEIKSKDVQVSEARKRYQTRDHQLHKF 52
Query: 184 CSSRENLT 191
+ LT
Sbjct: 53 IRTNGTLT 60
>sp|A4IFI1|CC157_BOVIN Coiled-coil domain-containing protein 157 OS=Bos taurus GN=CCDC157
PE=2 SV=2
Length = 688
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 27/115 (23%)
Query: 94 ELACFRGLVLDISYR--PVNVVCWK---RAICLEFMEKADVLEYYDQTINSPNGSFYIPA 148
+L +G ++D+ R PV WK RA C ++ +LE+YD P + A
Sbjct: 17 DLTDLQGAIVDVFSRAGPVRFPSWKFPDRAAC--DLDMVALLEHYDHVPGDPEFTQLAHA 74
Query: 149 VLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGG 202
VL L++V + R Q C+S ENLT++ +VP +R
Sbjct: 75 VL-----LELV--------------IDRLLLLLQSCASYLENLTLEQIVPPARAA 110
>sp|Q86L54|Y2829_DICDI TNF receptor-associated factor family protein DDB_G0272829
OS=Dictyostelium discoideum GN=DDB_G0272829 PE=3 SV=1
Length = 530
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVP 197
L ++K I+NNL K + + DNF CQ C E L I ++P
Sbjct: 12 LIIIKNESIENNL--KEISFSDNFKCQIC---EGLLISSLIP 48
>sp|Q9VL31|RIP_DROME RIP-like protein OS=Drosophila melanogaster GN=Ripalpha PE=2 SV=1
Length = 197
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNF 179
+NS Y +V + RH +V KR+R+ N + R M R+ +
Sbjct: 1 MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKY 43
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,474,952
Number of Sequences: 539616
Number of extensions: 3403416
Number of successful extensions: 7044
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7041
Number of HSP's gapped (non-prelim): 9
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)