Query 028336
Match_columns 210
No_of_seqs 174 out of 927
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:19:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 99.0 7.1E-11 2.4E-15 91.2 1.1 38 173-210 30-70 (112)
2 1tif_A IF3-N, translation init 81.2 5.9 0.0002 29.0 6.9 56 94-158 10-65 (78)
3 2jb0_B Colicin E7; hydrolase/i 51.6 3.9 0.00013 32.8 0.6 27 184-210 90-117 (131)
4 7cei_B Protein (colicin E7 imm 49.5 5.1 0.00018 34.3 1.0 26 185-210 166-192 (206)
5 1fr2_B Colicin E9; protein-pro 48.6 4.4 0.00015 32.6 0.5 27 184-210 93-120 (134)
6 3gox_A Restriction endonucleas 47.1 5.9 0.0002 33.8 1.0 30 166-195 120-160 (200)
7 3kpb_A Uncharacterized protein 30.7 41 0.0014 23.1 3.1 34 92-125 88-121 (122)
8 3gby_A Uncharacterized protein 25.5 85 0.0029 21.9 4.1 32 92-123 94-125 (128)
9 3jyw_9 60S ribosomal protein L 23.6 36 0.0012 24.5 1.8 20 168-187 16-35 (72)
10 2nyc_A Nuclear protein SNF4; b 23.4 83 0.0028 22.0 3.7 33 92-124 109-141 (144)
11 4fry_A Putative signal-transdu 23.2 32 0.0011 25.1 1.4 36 92-128 104-139 (157)
12 3j21_i 50S ribosomal protein L 23.0 37 0.0013 25.1 1.8 20 168-187 25-44 (83)
13 1ffk_W Ribosomal protein L37AE 22.9 37 0.0013 24.5 1.7 21 167-187 16-36 (73)
14 2jrr_A Uncharacterized protein 21.8 20 0.00067 25.6 0.0 11 177-187 39-49 (67)
15 1l8d_A DNA double-strand break 21.5 25 0.00084 25.7 0.5 16 172-187 41-56 (112)
16 4gqw_A CBS domain-containing p 21.0 1E+02 0.0035 21.7 3.8 34 92-125 111-144 (152)
17 1znf_A 31ST zinc finger from X 20.9 32 0.0011 17.0 0.8 9 179-187 2-10 (27)
18 3jtf_A Magnesium and cobalt ef 20.2 1.2E+02 0.0041 21.3 4.0 33 92-124 94-126 (129)
19 3izc_m 60S ribosomal protein R 20.2 47 0.0016 25.0 1.8 20 168-187 26-45 (92)
20 2m0e_A Zinc finger and BTB dom 20.2 34 0.0012 16.9 0.8 10 178-187 2-11 (29)
21 3sl7_A CBS domain-containing p 20.0 1.2E+02 0.0042 22.0 4.2 35 92-126 124-158 (180)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=98.99 E-value=7.1e-11 Score=91.25 Aligned_cols=38 Identities=39% Similarity=0.654 Sum_probs=34.5
Q ss_pred HHhHcCCcccccCCC---cCCeeCeeecCcCCCCCCcCcCC
Q 028336 173 LMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLV 210 (210)
Q Consensus 173 Vl~RD~~~CqYCG~~---~~LtvDHIIPrSrGG~dtweNLV 210 (210)
.++||+++|+|||.. ..+++|||+|+|+||.++|+|||
T Consensus 30 ~l~r~~~~C~yCg~~~~~~~~~vDHIiP~s~gG~~~~~Nl~ 70 (112)
T 2qgp_A 30 KNRIARGICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVV 70 (112)
T ss_dssp HHHHHHTBCTTTCCBCCGGGEEEEESSCTTTTCCCSTTTEE
T ss_pred HHHHcCCcCCCCCCcCCCCCcEEEEEeehhcCCCCChhhCh
Confidence 468999999999987 35899999999999999999985
No 2
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=81.24 E-value=5.9 Score=28.96 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=43.9
Q ss_pred ccCcceEEEEcCCCceeeeecHHHHHHHHHhCCeeEEEecCCeeeCCCcceecCeEEEEecceee
Q 028336 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158 (210)
Q Consensus 94 ~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~~gkAevle~~~~~IrS~sg~~~vPsVIrL~~yv~~ 158 (210)
.+..+.|.+++.+++.+++++.++|+.+--.-..+.++.. +.. -|.|-++-.|-+.
T Consensus 10 ~Ir~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevs------p~a---~PPVCkImDygK~ 65 (78)
T 1tif_A 10 QIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVA------PNA---KPPVCRIMDYGKF 65 (78)
T ss_dssp GCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE------TTS---SSCEEEEECHHHH
T ss_pred ccCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEEC------CCC---CCCEEEEecchhH
Confidence 4566789999999999999999999999777777777753 222 2888999877443
No 3
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=51.58 E-value=3.9 Score=32.81 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=20.6
Q ss_pred cCCCcCCeeCeeecCcCCCC-CCcCcCC
Q 028336 184 CSSRENLTIDHVVPASRGGE-WKWENLV 210 (210)
Q Consensus 184 CG~~~~LtvDHIIPrSrGG~-dtweNLV 210 (210)
-|.....+++|+.|.+.||. ...+||+
T Consensus 90 vG~r~kfelHH~~~I~~GG~VYdlDNL~ 117 (131)
T 2jb0_B 90 SGKRTSFELHHEKPISQNGGVYDMDNIS 117 (131)
T ss_dssp BTTBCBCEEEESSCCC--CCSSBGGGEE
T ss_pred cCCeeEEEEEeechhhcCCeeeeeeeEE
Confidence 34556799999999999997 8889973
No 4
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=49.53 E-value=5.1 Score=34.27 Aligned_cols=26 Identities=23% Similarity=0.541 Sum_probs=22.1
Q ss_pred CCCcCCeeCeeecCcCCCC-CCcCcCC
Q 028336 185 SSRENLTIDHVVPASRGGE-WKWENLV 210 (210)
Q Consensus 185 G~~~~LtvDHIIPrSrGG~-dtweNLV 210 (210)
|....++++|+.|.+.||. ...|||+
T Consensus 166 G~R~kfELHH~~~I~~GG~VYDiDNLr 192 (206)
T 7cei_B 166 GKRTSFELHHEKPISQNGGVYDMDNIS 192 (206)
T ss_dssp TTBCBCEEEESSCSSSSCCSSBTTSEE
T ss_pred CCeeeEEeecCcccccCCeeeccccee
Confidence 5556799999999999996 8889984
No 5
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=48.65 E-value=4.4 Score=32.58 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=22.4
Q ss_pred cCCCcCCeeCeeecCcCCCC-CCcCcCC
Q 028336 184 CSSRENLTIDHVVPASRGGE-WKWENLV 210 (210)
Q Consensus 184 CG~~~~LtvDHIIPrSrGG~-dtweNLV 210 (210)
-|.....+++|+.|.+.||. ...+||+
T Consensus 93 vG~r~kfelHH~~~I~~GG~VYdlDNL~ 120 (134)
T 1fr2_B 93 VGGRKVYELHHDKPISQGGEVYDMDNIR 120 (134)
T ss_dssp BTTBCBCEEEESSCGGGTCCSSBGGGEE
T ss_pred cCCeeEEEEEecchhhcCCeeeeeecEE
Confidence 34456799999999999997 8889973
No 6
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=47.12 E-value=5.9 Score=33.80 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=24.8
Q ss_pred ChhhHHHHHhHcC-----CcccccCCCc------CCeeCee
Q 028336 166 NNLSRKNLMYRDN-----FTCQYCSSRE------NLTIDHV 195 (210)
Q Consensus 166 ~~~tR~~Vl~RD~-----~~CqYCG~~~------~LtvDHI 195 (210)
....+..+++.++ ++|+.||.+. .+-+||=
T Consensus 120 T~eey~~L~e~Qg~~~~~G~C~ICg~~~~~~~~k~lvVDHD 160 (200)
T 3gox_A 120 SSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHN 160 (200)
T ss_dssp CHHHHHHHHTTCCCTTCEEECTTTCCEEEBTTTBCEEEEEC
T ss_pred CHHHHHHHHHHcccCCCCCcCcCCCCCCCcCcccceeeecc
Confidence 5678889999999 9999999872 3778884
No 7
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=30.65 E-value=41 Score=23.10 Aligned_cols=34 Identities=18% Similarity=-0.066 Sum_probs=26.3
Q ss_pred ccccCcceEEEEcCCCceeeeecHHHHHHHHHhC
Q 028336 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFME 125 (210)
Q Consensus 92 ~~~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~~g 125 (210)
+.......+.|+|..++++++++.++.+..+..+
T Consensus 88 ~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~~ 121 (122)
T 3kpb_A 88 MSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK 121 (122)
T ss_dssp HHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC--
T ss_pred HHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhcC
Confidence 3344567788999999999999999998876543
No 8
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=25.55 E-value=85 Score=21.88 Aligned_cols=32 Identities=22% Similarity=0.092 Sum_probs=25.9
Q ss_pred ccccCcceEEEEcCCCceeeeecHHHHHHHHH
Q 028336 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEF 123 (210)
Q Consensus 92 ~~~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~ 123 (210)
|.......+.|+|..++++++++.++.+..+.
T Consensus 94 ~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 94 VAAAKCSVVPLADEDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp HHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred HHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 34445567889999999999999999887764
No 9
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.63 E-value=36 Score=24.53 Aligned_cols=20 Identities=10% Similarity=0.678 Sum_probs=17.0
Q ss_pred hhHHHHHhHcCCcccccCCC
Q 028336 168 LSRKNLMYRDNFTCQYCSSR 187 (210)
Q Consensus 168 ~tR~~Vl~RD~~~CqYCG~~ 187 (210)
...-++-.+..|+|..||+.
T Consensus 16 vkkie~~q~~ky~C~fCgk~ 35 (72)
T 3jyw_9 16 VKKLEIQQHARYDCSFCGKK 35 (72)
T ss_dssp THHHHHHHHSCBCCSSCCSS
T ss_pred HHHHHHHhccCccCCCCCCc
Confidence 45677889999999999976
No 10
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=23.35 E-value=83 Score=21.98 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=26.6
Q ss_pred ccccCcceEEEEcCCCceeeeecHHHHHHHHHh
Q 028336 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFM 124 (210)
Q Consensus 92 ~~~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~~ 124 (210)
|.......+.|+|.+++++++++.++.+..+..
T Consensus 109 m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 109 IRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp HHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred HHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 334456788899999999999999998887653
No 11
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=23.19 E-value=32 Score=25.06 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=29.0
Q ss_pred ccccCcceEEEEcCCCceeeeecHHHHHHHHHhCCee
Q 028336 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKAD 128 (210)
Q Consensus 92 ~~~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~~gkAe 128 (210)
|.......+.|+| .++++++++.++.+..+..+..+
T Consensus 104 m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 104 MTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp HHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred HHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHh
Confidence 3344566788999 89999999999999998876654
No 12
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.02 E-value=37 Score=25.09 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=16.6
Q ss_pred hhHHHHHhHcCCcccccCCC
Q 028336 168 LSRKNLMYRDNFTCQYCSSR 187 (210)
Q Consensus 168 ~tR~~Vl~RD~~~CqYCG~~ 187 (210)
...-++-.+..|+|..||+.
T Consensus 25 vkkie~~q~~ky~CpfCGk~ 44 (83)
T 3j21_i 25 VAAVEAKMRQKHTCPVCGRK 44 (83)
T ss_dssp HHHHHHHHHSCBCCSSSCSS
T ss_pred HHHHHHHhhcccCCCCCCCc
Confidence 45567888999999999976
No 13
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.89 E-value=37 Score=24.46 Aligned_cols=21 Identities=10% Similarity=0.439 Sum_probs=17.1
Q ss_pred hhhHHHHHhHcCCcccccCCC
Q 028336 167 NLSRKNLMYRDNFTCQYCSSR 187 (210)
Q Consensus 167 ~~tR~~Vl~RD~~~CqYCG~~ 187 (210)
...+-++..+..|+|.+||..
T Consensus 16 ~vkkie~~q~~ky~C~fCgk~ 36 (73)
T 1ffk_W 16 RVRDVEIKHKKKYKCPVCGFP 36 (73)
T ss_pred HHHHHHHhcccCccCCCCCCc
Confidence 345567889999999999975
No 14
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=21.76 E-value=20 Score=25.57 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=8.6
Q ss_pred cCCcccccCCC
Q 028336 177 DNFTCQYCSSR 187 (210)
Q Consensus 177 D~~~CqYCG~~ 187 (210)
....|.|||..
T Consensus 39 g~~~CpYCg~~ 49 (67)
T 2jrr_A 39 GWVECPYCDCK 49 (67)
T ss_dssp SEEEETTTTEE
T ss_pred CeEECCCCCCE
Confidence 34689999975
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.48 E-value=25 Score=25.67 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=12.7
Q ss_pred HHHhHcCCcccccCCC
Q 028336 172 NLMYRDNFTCQYCSSR 187 (210)
Q Consensus 172 ~Vl~RD~~~CqYCG~~ 187 (210)
..+..++..|+.||++
T Consensus 41 ~~l~~~g~~CPvCgs~ 56 (112)
T 1l8d_A 41 EELKKAKGKCPVCGRE 56 (112)
T ss_dssp HHHTTCSEECTTTCCE
T ss_pred HHhhcCCCCCCCCCCc
Confidence 4556678999999976
No 16
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=20.95 E-value=1e+02 Score=21.66 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=27.3
Q ss_pred ccccCcceEEEEcCCCceeeeecHHHHHHHHHhC
Q 028336 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFME 125 (210)
Q Consensus 92 ~~~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~~g 125 (210)
|.......+.|+|.+++++++|+.++-+..+...
T Consensus 111 ~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 111 LLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp HHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred HHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 3344567888999999999999999999887653
No 17
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.86 E-value=32 Score=17.01 Aligned_cols=9 Identities=22% Similarity=0.999 Sum_probs=7.7
Q ss_pred CcccccCCC
Q 028336 179 FTCQYCSSR 187 (210)
Q Consensus 179 ~~CqYCG~~ 187 (210)
+.|..||+.
T Consensus 2 ~~C~~C~k~ 10 (27)
T 1znf_A 2 YKCGLCERS 10 (27)
T ss_dssp CBCSSSCCB
T ss_pred ccCCCCCCc
Confidence 689999976
No 18
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=20.23 E-value=1.2e+02 Score=21.27 Aligned_cols=33 Identities=12% Similarity=0.001 Sum_probs=25.7
Q ss_pred ccccCcceEEEEcCCCceeeeecHHHHHHHHHh
Q 028336 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFM 124 (210)
Q Consensus 92 ~~~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~~ 124 (210)
|.......+.|+|..+++++++|.++.+..++.
T Consensus 94 m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 94 FRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp HHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred HHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 334456778899999999999999998887664
No 19
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.22 E-value=47 Score=25.02 Aligned_cols=20 Identities=10% Similarity=0.678 Sum_probs=16.4
Q ss_pred hhHHHHHhHcCCcccccCCC
Q 028336 168 LSRKNLMYRDNFTCQYCSSR 187 (210)
Q Consensus 168 ~tR~~Vl~RD~~~CqYCG~~ 187 (210)
...-++-.+..|+|..||..
T Consensus 26 vkkie~~q~~ky~CpfCgk~ 45 (92)
T 3izc_m 26 VKKLEIQQHARYDCSFCGKK 45 (92)
T ss_dssp HHHHHHHHHSCCCCSSSCSS
T ss_pred HHHHHHHHhcCCcCCCCCCc
Confidence 44557888999999999975
No 20
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.19 E-value=34 Score=16.91 Aligned_cols=10 Identities=20% Similarity=0.826 Sum_probs=8.1
Q ss_pred CCcccccCCC
Q 028336 178 NFTCQYCSSR 187 (210)
Q Consensus 178 ~~~CqYCG~~ 187 (210)
.+.|..||..
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 2m0e_A 2 EHKCPHCDKK 11 (29)
T ss_dssp CCCCSSCCCC
T ss_pred CCcCCCCCcc
Confidence 3789999976
No 21
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=20.03 E-value=1.2e+02 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.7
Q ss_pred ccccCcceEEEEcCCCceeeeecHHHHHHHHHhCC
Q 028336 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEK 126 (210)
Q Consensus 92 ~~~~~~~rVLVLNasy~Pl~~vswqrAi~Ll~~gk 126 (210)
|.......+.|+|.+++++++|+.++-+..+..-.
T Consensus 124 m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~ 158 (180)
T 3sl7_A 124 LLETKFRRLPVVDADGKLIGILTRGNVVRAALQIK 158 (180)
T ss_dssp HTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHh
Confidence 44556678899999999999999999988876543
Done!