Query 028337
Match_columns 210
No_of_seqs 110 out of 483
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 09:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 5.9E-51 1.3E-55 341.7 19.5 203 4-206 23-229 (230)
2 PF02453 Reticulon: Reticulon; 100.0 7.9E-38 1.7E-42 250.4 -8.0 163 24-186 1-169 (169)
3 PF04842 DUF639: Plant protein 97.2 0.0044 9.6E-08 59.4 11.9 165 22-206 504-678 (683)
4 KOG1792 Reticulon [Intracellul 95.3 0.08 1.7E-06 44.9 7.5 81 116-196 42-145 (230)
5 PF06398 Pex24p: Integral pero 92.8 1.6 3.4E-05 39.1 11.0 23 23-45 31-53 (359)
6 PF08372 PRT_C: Plant phosphor 92.5 0.92 2E-05 36.3 8.1 65 103-167 71-135 (156)
7 PF08372 PRT_C: Plant phosphor 88.9 0.31 6.7E-06 39.0 2.3 26 21-46 82-107 (156)
8 PF01484 Col_cuticle_N: Nemato 78.9 11 0.00024 23.7 6.0 35 155-189 14-51 (53)
9 PF10112 Halogen_Hydrol: 5-bro 75.9 42 0.0009 27.3 10.4 74 131-205 16-100 (199)
10 PF10256 Erf4: Golgin subfamil 70.6 41 0.00089 24.9 8.3 21 93-117 29-49 (118)
11 KOG1726 HVA22/DP1 gene product 67.7 76 0.0016 26.9 10.4 35 167-201 94-128 (225)
12 PF01594 UPF0118: Domain of un 61.3 1.1E+02 0.0023 26.4 11.9 58 136-193 131-189 (327)
13 COG0053 MMT1 Predicted Co/Zn/C 58.8 1.3E+02 0.0028 26.5 11.7 118 57-175 83-210 (304)
14 PRK11677 hypothetical protein; 53.3 69 0.0015 24.9 6.7 14 172-185 33-46 (134)
15 PF10444 Nbl1_Borealin_N: Nbl1 52.7 45 0.00097 21.9 4.8 39 166-204 7-48 (59)
16 PF13677 MotB_plug: Membrane M 51.6 39 0.00085 22.2 4.4 30 141-170 17-46 (58)
17 KOG1889 Putative phosphoinosit 51.0 54 0.0012 31.4 6.7 81 10-90 485-575 (579)
18 PF02453 Reticulon: Reticulon; 49.4 5.9 0.00013 30.9 0.1 24 23-46 99-122 (169)
19 KOG3488 Dolichol phosphate-man 49.3 36 0.00079 23.6 4.0 36 116-151 38-73 (81)
20 PF13198 DUF4014: Protein of u 47.7 83 0.0018 21.8 5.5 35 152-186 34-68 (72)
21 PF11696 DUF3292: Protein of u 41.9 82 0.0018 30.8 6.5 45 98-142 96-140 (642)
22 TIGR02872 spore_ytvI sporulati 41.0 2.3E+02 0.0051 24.3 13.4 9 185-193 195-203 (341)
23 PRK02515 psbU photosystem II c 38.9 22 0.00048 27.6 1.8 39 168-208 37-76 (132)
24 KOG0058 Peptide exporter, ABC 38.0 3.7E+02 0.008 26.8 10.3 36 151-186 293-328 (716)
25 PF06295 DUF1043: Protein of u 35.6 1.9E+02 0.0041 22.0 6.6 40 152-191 6-48 (128)
26 PF12732 YtxH: YtxH-like prote 34.4 80 0.0017 21.4 4.0 48 154-201 12-59 (74)
27 COG3887 Predicted signaling pr 33.2 4.8E+02 0.01 25.6 10.2 63 137-203 25-88 (655)
28 COG4987 CydC ABC-type transpor 31.5 4.9E+02 0.011 25.2 12.7 47 143-189 153-202 (573)
29 PF03037 KMP11: Kinetoplastid 31.2 1.2E+02 0.0026 21.2 4.3 33 164-196 46-78 (90)
30 COG3404 Methenyl tetrahydrofol 30.7 2.9E+02 0.0063 23.1 7.2 29 153-181 38-67 (208)
31 PHA03049 IMV membrane protein; 26.3 2.2E+02 0.0047 19.5 5.0 11 113-123 57-67 (68)
32 PRK06433 NADH dehydrogenase su 26.2 2.5E+02 0.0054 20.1 6.5 43 26-68 21-64 (88)
33 PRK02654 putative inner membra 26.1 3.1E+02 0.0067 25.0 7.1 35 158-194 39-73 (375)
34 PF06881 Elongin_A: RNA polyme 25.8 1.3E+02 0.0029 22.0 4.2 33 161-193 64-96 (109)
35 PF00873 ACR_tran: AcrB/AcrD/A 25.7 7.4E+02 0.016 25.4 14.7 24 49-72 375-400 (1021)
36 COG5038 Ca2+-dependent lipid-b 24.3 4.2E+02 0.0092 28.0 8.4 51 127-179 159-209 (1227)
37 PF10332 DUF2418: Protein of u 23.9 2.9E+02 0.0064 20.1 7.6 53 147-205 39-91 (99)
38 PF14204 Ribosomal_L18_c: Ribo 23.6 46 0.001 24.3 1.3 37 167-207 26-64 (94)
39 PF03978 Borrelia_REV: Borreli 22.4 3.1E+02 0.0066 22.0 5.7 18 164-181 21-38 (160)
40 PF07234 DUF1426: Protein of u 22.1 3.4E+02 0.0073 20.1 6.6 26 141-166 17-42 (117)
41 COG2177 FtsX Cell division pro 21.5 4.5E+02 0.0098 23.1 7.3 57 116-174 145-201 (297)
42 PF10327 7TM_GPCR_Sri: Serpent 21.5 5.4E+02 0.012 22.3 8.9 33 93-125 155-187 (303)
43 PF09577 Spore_YpjB: Sporulati 20.6 2.7E+02 0.0058 23.7 5.5 43 108-155 174-218 (232)
44 PF04917 Shufflon_N: Bacterial 20.5 5.8E+02 0.013 23.1 7.9 21 154-174 16-36 (356)
45 PF06936 Selenoprotein_S: Sele 20.5 1.7E+02 0.0037 24.1 4.2 21 148-168 37-57 (190)
46 PF11696 DUF3292: Protein of u 20.5 79 0.0017 30.9 2.5 26 23-48 114-139 (642)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-51 Score=341.66 Aligned_cols=203 Identities=43% Similarity=0.762 Sum_probs=195.5
Q ss_pred CCCCCCCcccchhhhcCCccccceeeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028337 4 SSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILN 83 (210)
Q Consensus 4 ~~~~~~~~~~~~~~~lgg~~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~ls~~s~~~l~~l~~~f~~~~~~~~~~ 83 (210)
.++|+|+|++|+|+.+|||+++|+++|||++.||.+|++++++|++|+..+|+.+++.|+++++.+.+.|.|++...+++
T Consensus 23 ~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~ 102 (230)
T KOG1792|consen 23 KSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLN 102 (230)
T ss_pred hhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred C-CCC--CCC-ccccCHHHHHHHHHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028337 84 R-PAP--PLP-ELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIV 159 (210)
Q Consensus 84 ~-~~~--~~~-~~~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~ 159 (210)
| +.| +.| ++++|||.+++.+++++.++|+.+.++|++++++|+.+++|++++||+++++|+|||++||+|+|++++
T Consensus 103 k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~ 182 (230)
T KOG1792|consen 103 KKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLL 182 (230)
T ss_pred cCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7 445 577 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccchhhhh
Q 028337 160 LTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEK 206 (210)
Q Consensus 160 FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~~ 206 (210)
||+|.+||+|||+||++++.+.++++++|+++++|+++|||+++.++
T Consensus 183 ~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~ 229 (230)
T KOG1792|consen 183 FTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK 229 (230)
T ss_pred hcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 99999999999999999999999999999999999999999988664
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=7.9e-38 Score=250.45 Aligned_cols=163 Identities=34% Similarity=0.585 Sum_probs=44.7
Q ss_pred ccceeeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCCccccCHH
Q 028337 24 AADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPA------PPLPELHLSEE 97 (210)
Q Consensus 24 v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~ls~~s~~~l~~l~~~f~~~~~~~~~~~~~------~~~~~~~isee 97 (210)
|+|+++||||++||.+|++++++|+++++.++|++|++|+++++.+++.+++....+.+++.+ ++.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999998887655444444432 33347899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 028337 98 MVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYA 177 (210)
Q Consensus 98 ~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~~ID~~~ 177 (210)
.++++++.+.+.+|..++.+|+++.++|+..|+++++++|+++++|+++|++||++++++++||+|.+||+||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028337 178 ILGYRKLRQ 186 (210)
Q Consensus 178 ~~~~~~~~~ 186 (210)
++++++++|
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 999988775
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.24 E-value=0.0044 Score=59.41 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=102.6
Q ss_pred ccccceeeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CC-CCcc-
Q 028337 22 GLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPA-------PP-LPEL- 92 (210)
Q Consensus 22 ~~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~ls~~s~~~l~~l~~~f~~~~~~~~~~~~~-------~~-~~~~- 92 (210)
..+.++..|+||.+|..+++..+.+.+ ...+..+.-..++.+++..+|.+..+-.++.. || ...+
T Consensus 504 ~~~~~l~~We~P~kt~~Fl~~~~~iI~------r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvE 577 (683)
T PF04842_consen 504 KWLQKLASWEEPLKTLVFLALFLYIIY------RGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVE 577 (683)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHH
Confidence 347789999999999988887765422 12222222222333333333432211112221 22 1111
Q ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchh
Q 028337 93 -HLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYED 171 (210)
Q Consensus 93 -~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~ 171 (210)
.+.-.....-++......|-++-++|.|++...+..+-++++.+..++.+-..+.+--++...++-.||-..=+.+
T Consensus 578 qilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr--- 654 (683)
T PF04842_consen 578 QILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR--- 654 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch---
Confidence 1222233344567778899999999999999999999999999999999999999988888888888885432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccchhhhh
Q 028337 172 HIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEK 206 (210)
Q Consensus 172 ~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~~ 206 (210)
.-.++..+++++-+. .||-+|+.-
T Consensus 655 ---~s~er~~RRlrEWW~--------sIPAaPV~v 678 (683)
T PF04842_consen 655 ---ESSERFNRRLREWWD--------SIPAAPVQV 678 (683)
T ss_pred ---hhHHHHHHHHHHHHh--------hCCccceEe
Confidence 123344445554433 688887653
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.08 Score=44.94 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=68.1
Q ss_pred HhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 028337 116 VSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERY-----------------------EDH 172 (210)
Q Consensus 116 ~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~-----------------------q~~ 172 (210)
...++++|+|.+.+..++.+..++..+-..++..++..++.+.+++++..|.++ |+.
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 578999999999999999999999999999988888888888888888777665 566
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 028337 173 IDKYAILGYRKLRQLYVKIDEEFV 196 (210)
Q Consensus 173 ID~~~~~~~~~~~~~~~~~~~kv~ 196 (210)
++++...++.++|...+++++=..
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~ia~ 145 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDIAL 145 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888888888776433
No 5
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=92.83 E-value=1.6 Score=39.07 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=17.9
Q ss_pred cccceeeccccchhHHHHHHHHH
Q 028337 23 LAADVILWRRKNVTVGILLVTLA 45 (210)
Q Consensus 23 ~v~dlllWrd~~~Sg~vf~~~~~ 45 (210)
.+.++++|+||..+-.++...+.
T Consensus 31 ~vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 31 RVLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHHeEEeCCCCcchHHHHHHHH
Confidence 47789999999988777665553
No 6
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=92.53 E-value=0.92 Score=36.27 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 028337 103 AALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYE 167 (210)
Q Consensus 103 ~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~ 167 (210)
++.+...+....+.++.++.++|+..|..+++++++.+.+--+..+..++.+..+..++=|++-.
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~ 135 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRN 135 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccC
Confidence 44555666777789999999999999999999998888887777777776676666667666654
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=88.90 E-value=0.31 Score=38.95 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.7
Q ss_pred CccccceeeccccchhHHHHHHHHHH
Q 028337 21 GGLAADVILWRRKNVTVGILLVTLAA 46 (210)
Q Consensus 21 g~~v~dlllWrd~~~Sg~vf~~~~~~ 46 (210)
|+++..++.||||..|++...+.+++
T Consensus 82 gERl~allsWrdP~aT~lf~~~clv~ 107 (156)
T PF08372_consen 82 GERLQALLSWRDPRATALFVVFCLVA 107 (156)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHH
Confidence 67899999999999999888877664
No 8
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=78.88 E-value=11 Score=23.67 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHH
Q 028337 155 SLVIVLTLPALYER---YEDHIDKYAILGYRKLRQLYV 189 (210)
Q Consensus 155 ~~v~~FTlP~lY~~---~q~~ID~~~~~~~~~~~~~~~ 189 (210)
.+.+++++|.+|.. -|++++.-++..+...++.++
T Consensus 14 i~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~ 51 (53)
T PF01484_consen 14 ILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAWN 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568899999864 445555666666666666554
No 9
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=75.85 E-value=42 Score=27.35 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchhHH-----------HHHHHHHHHHHHHHHHHHhHHHHHhc
Q 028337 131 RVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHI-----------DKYAILGYRKLRQLYVKIDEEFVSKV 199 (210)
Q Consensus 131 k~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~~I-----------D~~~~~~~~~~~~~~~~~~~kv~~ki 199 (210)
-+++..|++++.|.-.+++--+.++.++.+.+.....+++..- .++++...++.+++.+++++ ...+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~-~~~~i 94 (199)
T PF10112_consen 16 LIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIEK-AIKRI 94 (199)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence 3445566666665555555444455555555444444332211 12344444555555555554 33356
Q ss_pred cchhhh
Q 028337 200 RKWILE 205 (210)
Q Consensus 200 p~~~~~ 205 (210)
++....
T Consensus 95 ~~~~~~ 100 (199)
T PF10112_consen 95 RDLEMI 100 (199)
T ss_pred CCHHHH
Confidence 665443
No 10
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=70.58 E-value=41 Score=24.95 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=13.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHh
Q 028337 93 HLSEEMVNEVAALIRTRVNDFLSVS 117 (210)
Q Consensus 93 ~isee~v~~~~~~v~~~in~~l~~~ 117 (210)
.+|+++.++ +...+|..+...
T Consensus 29 ~is~~ef~~----iI~~IN~~l~~a 49 (118)
T PF10256_consen 29 YISPEEFEE----IINTINQILKEA 49 (118)
T ss_pred CCCHHHHHH----HHHHHHHHHHHH
Confidence 388888744 456777776554
No 11
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=67.70 E-value=76 Score=26.92 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=26.0
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 028337 167 ERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK 201 (210)
Q Consensus 167 ~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~ 201 (210)
.++|++||+++.+++++.-++...+=.+.++--+.
T Consensus 94 s~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~ 128 (225)
T KOG1726|consen 94 SKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQT 128 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999988877777665555554443
No 12
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=61.26 E-value=1.1e+02 Score=26.39 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHHHhH
Q 028337 136 LWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG-YRKLRQLYVKIDE 193 (210)
Q Consensus 136 L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~~ID~~~~~~-~~~~~~~~~~~~~ 193 (210)
-++.+..++..+...=+.+..+..|-.=.=.++.++.+.+....- +++.++..+++++
T Consensus 131 ~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (327)
T PF01594_consen 131 SSLSSFISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIRLLPPRNRERFEEILRKIDQ 189 (327)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 344444444443333333333333332233333333344333322 3444444444433
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=58.84 E-value=1.3e+02 Score=26.47 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc--------ccCHHHHHHHHHHHHHHHHHHHHHhchhhcccchHH
Q 028337 57 LLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPEL--------HLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRL 128 (210)
Q Consensus 57 ~ls~~s~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~--------~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~ 128 (210)
+.+++.-++++..++..+|....+.++..+++.+.. .+..+.+.+....+....|.-....-..=.--|...
T Consensus 83 l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~t 162 (304)
T COG0053 83 LASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLT 162 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHH
Confidence 445555555555555555655556665333333211 133444444444455554443333332222337777
Q ss_pred HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHH-HHHHhchhHHHH
Q 028337 129 FFRVALYLWLISFVG-GLTDFLTLGYTSLVIVLTLP-ALYERYEDHIDK 175 (210)
Q Consensus 129 slk~~~~L~~ls~lG-~~~s~~tLl~i~~v~~FTlP-~lY~~~q~~ID~ 175 (210)
++-+++++- ..+.| .|.+...=+.+++..+.+.- .++|.-++.+|+
T Consensus 163 s~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~ 210 (304)
T COG0053 163 SLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDA 210 (304)
T ss_pred HHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 777777777 77777 55555554555554444443 556666666663
No 14
>PRK11677 hypothetical protein; Provisional
Probab=53.34 E-value=69 Score=24.90 Aligned_cols=14 Identities=7% Similarity=-0.107 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 028337 172 HIDKYAILGYRKLR 185 (210)
Q Consensus 172 ~ID~~~~~~~~~~~ 185 (210)
...+-+++++.+++
T Consensus 33 ~le~eLe~~k~ele 46 (134)
T PRK11677 33 ALQYELEKNKAELE 46 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 15
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=52.73 E-value=45 Score=21.88 Aligned_cols=39 Identities=5% Similarity=0.083 Sum_probs=29.3
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHhHH---HHHhccchhh
Q 028337 166 YERYEDHIDKYAILGYRKLRQLYVKIDEE---FVSKVRKWIL 204 (210)
Q Consensus 166 Y~~~q~~ID~~~~~~~~~~~~~~~~~~~k---v~~kip~~~~ 204 (210)
-+.++.+++.-++..++..+.+.+.++.. -+.+||++.-
T Consensus 7 l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR 48 (59)
T PF10444_consen 7 LQNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 35677788888888888888888887765 5778998643
No 16
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=51.63 E-value=39 Score=22.16 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=21.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhch
Q 028337 141 FVGGLTDFLTLGYTSLVIVLTLPALYERYE 170 (210)
Q Consensus 141 ~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q 170 (210)
|+-++-++.||+..-|+++++.-.+=+...
T Consensus 17 WlvtyaDlmTLLl~fFVlL~s~s~~d~~k~ 46 (58)
T PF13677_consen 17 WLVTYADLMTLLLAFFVLLFSMSSVDKEKF 46 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344556889999999999888765544433
No 17
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=50.98 E-value=54 Score=31.39 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=48.4
Q ss_pred CcccchhhhcCCccccceee----------ccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 028337 10 KRQRTIHEILGGGLAADVIL----------WRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAA 79 (210)
Q Consensus 10 ~~~~~~~~~lgg~~v~dlll----------Wrd~~~Sg~vf~~~~~~~~L~~~~~~s~ls~~s~~~l~~l~~~f~~~~~~ 79 (210)
.||++++-++|+-.+.+... |+--...++...+..++...+....-+++-.+.+...+++...+++.+..
T Consensus 485 ~rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~ 564 (579)
T KOG1889|consen 485 TRQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILINGD 564 (579)
T ss_pred cccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheechH
Confidence 47889999999888777774 55555544444444432222223335555555555555555555555566
Q ss_pred HHhCCCCCCCC
Q 028337 80 AILNRPAPPLP 90 (210)
Q Consensus 80 ~~~~~~~~~~~ 90 (210)
++.||+....|
T Consensus 565 ~fvnwPrl~~p 575 (579)
T KOG1889|consen 565 QFVNWPRLVLP 575 (579)
T ss_pred HhcCCccccCc
Confidence 88899864444
No 18
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=49.39 E-value=5.9 Score=30.94 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=12.7
Q ss_pred cccceeeccccchhHHHHHHHHHH
Q 028337 23 LAADVILWRRKNVTVGILLVTLAA 46 (210)
Q Consensus 23 ~v~dlllWrd~~~Sg~vf~~~~~~ 46 (210)
...+++.|+||+.|..++++..++
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~l~~l 122 (169)
T PF02453_consen 99 WLRRLVFGEDPKKSLKVFVVLYIL 122 (169)
T ss_dssp HHHCCCHCT-TTGGG---------
T ss_pred HHHHHHcCccHHHHHHHHHHHHHH
Confidence 477999999999999987766654
No 19
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=49.32 E-value=36 Score=23.60 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=29.3
Q ss_pred HhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028337 116 VSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTL 151 (210)
Q Consensus 116 ~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tL 151 (210)
..++.++-+++...+-++++++.+..+|-++|...+
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMl 73 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVML 73 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 456678888898899999999999999988776543
No 20
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=47.72 E-value=83 Score=21.79 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 028337 152 GYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186 (210)
Q Consensus 152 l~i~~v~~FTlP~lY~~~q~~ID~~~~~~~~~~~~ 186 (210)
+.....+..++-.+.|+|.+..-.......++++.
T Consensus 34 ll~~~~i~~~~E~l~e~Y~~~~w~~F~~Lhnkinp 68 (72)
T PF13198_consen 34 LLFVWIIGKIIEPLFELYKDWFWNPFNALHNKINP 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccccc
Confidence 34445555666677777776666666655555544
No 21
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=41.87 E-value=82 Score=30.81 Aligned_cols=45 Identities=4% Similarity=0.056 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHH
Q 028337 98 MVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFV 142 (210)
Q Consensus 98 ~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~l 142 (210)
.++|+--.+..-+-.+...+.||-+|++.+.+..++++.++..++
T Consensus 96 ~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~ 140 (642)
T PF11696_consen 96 NLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLL 140 (642)
T ss_pred HhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 456666667777788889999999999999887666544443333
No 22
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=41.01 E-value=2.3e+02 Score=24.32 Aligned_cols=9 Identities=0% Similarity=0.593 Sum_probs=3.4
Q ss_pred HHHHHHHhH
Q 028337 185 RQLYVKIDE 193 (210)
Q Consensus 185 ~~~~~~~~~ 193 (210)
++..+++++
T Consensus 195 ~~i~~~i~~ 203 (341)
T TIGR02872 195 KNIFSELKK 203 (341)
T ss_pred HHHHHHHHH
Confidence 333333333
No 23
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=38.93 E-value=22 Score=27.63 Aligned_cols=39 Identities=8% Similarity=-0.210 Sum_probs=22.7
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccc-hhhhhhc
Q 028337 168 RYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK-WILEKQK 208 (210)
Q Consensus 168 ~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~-~~~~~k~ 208 (210)
.+....|..++....+++=... +..-+.++|+ +|.++++
T Consensus 37 e~~N~~d~kl~~~~~kIdiN~A--~~~el~~lpGigP~~A~~ 76 (132)
T PRK02515 37 VPQNVADAKLGEFGEKIDLNNS--SVRAFRQFPGMYPTLAGK 76 (132)
T ss_pred hhcChhhHHHHhcCCcccCCcc--CHHHHHHCCCCCHHHHHH
Confidence 3456777766654455543333 3334678888 7777654
No 24
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.96 E-value=3.7e+02 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 028337 151 LGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186 (210)
Q Consensus 151 Ll~i~~v~~FTlP~lY~~~q~~ID~~~~~~~~~~~~ 186 (210)
+.++.+-..+.++++|-+|.+.+-+..+.+..+.++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~ 328 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQ 328 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888877777666665555
No 25
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.57 E-value=1.9e+02 Score=21.99 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHH
Q 028337 152 GYTSLVIVLTLPALYERY---EDHIDKYAILGYRKLRQLYVKI 191 (210)
Q Consensus 152 l~i~~v~~FTlP~lY~~~---q~~ID~~~~~~~~~~~~~~~~~ 191 (210)
+++|+++.|.+-++...+ |....+-++..+.+++++-+.+
T Consensus 6 lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V 48 (128)
T PF06295_consen 6 LVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEV 48 (128)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444433 2333444444444444433333
No 26
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=34.40 E-value=80 Score=21.42 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 028337 154 TSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK 201 (210)
Q Consensus 154 i~~v~~FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~ 201 (210)
-+.+.++..|.==++-++.|-...+.+++.+++.+++..+++-.+...
T Consensus 12 Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 59 (74)
T PF12732_consen 12 GAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEE 59 (74)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788887788888888888888888888888866654434433
No 27
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=33.23 E-value=4.8e+02 Score=25.62 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=32.4
Q ss_pred HHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccchh
Q 028337 137 WLISFV-GGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWI 203 (210)
Q Consensus 137 ~~ls~l-G~~~s~~tLl~i~~v~~FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~ 203 (210)
-++++. |+|.+..-++.++++..|.+-..+.-||+..-.+++....++++ .-+..+-.+|-+.
T Consensus 25 iiv~f~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~----~~~~al~nmPiGi 88 (655)
T COG3887 25 IIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEK----SLEEALTNMPIGI 88 (655)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCceE
Confidence 334443 44444444444444444544444555555444466666555555 4445566788643
No 28
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=31.49 E-value=4.9e+02 Score=25.21 Aligned_cols=47 Identities=21% Similarity=0.327 Sum_probs=32.7
Q ss_pred HhhhhHH---HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 028337 143 GGLTDFL---TLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYV 189 (210)
Q Consensus 143 G~~~s~~---tLl~i~~v~~FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~ 189 (210)
.++||.. ++..+..+..+.+|.+.-++.+..++++...+.....+..
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~t 202 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFT 202 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3455544 3444445566778999999999999999888876665443
No 29
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=31.21 E-value=1.2e+02 Score=21.15 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=25.6
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 028337 164 ALYERYEDHIDKYAILGYRKLRQLYVKIDEEFV 196 (210)
Q Consensus 164 ~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~ 196 (210)
--|++++.-|..+-++...++.++.+-+..|+-
T Consensus 46 ehyekfe~miqehtdkfnkkm~ehsehfk~kfa 78 (90)
T PF03037_consen 46 EHYEKFERMIQEHTDKFNKKMHEHSEHFKHKFA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888888887777643
No 30
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=30.68 E-value=2.9e+02 Score=23.09 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHH-HHhchhHHHHHHHHHH
Q 028337 153 YTSLVIVLTLPAL-YERYEDHIDKYAILGY 181 (210)
Q Consensus 153 ~i~~v~~FTlP~l-Y~~~q~~ID~~~~~~~ 181 (210)
.+..++-||.-+= |+.|+++++..++...
T Consensus 38 L~~MV~~lt~gKk~Y~~~d~e~k~i~~~~~ 67 (208)
T COG3404 38 LASMVANLTRGKKGYEDYDDEMKEILEELQ 67 (208)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 3566777888754 9999999998777544
No 31
>PHA03049 IMV membrane protein; Provisional
Probab=26.25 E-value=2.2e+02 Score=19.48 Aligned_cols=11 Identities=9% Similarity=-0.040 Sum_probs=6.3
Q ss_pred HHHHhchhhcc
Q 028337 113 FLSVSQDMALG 123 (210)
Q Consensus 113 ~l~~~r~l~~~ 123 (210)
.++.+.++|.+
T Consensus 57 hl~SfyklFs~ 67 (68)
T PHA03049 57 HLNSFYKLFSS 67 (68)
T ss_pred HHHHHHHHhcC
Confidence 45566666655
No 32
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=26.17 E-value=2.5e+02 Score=20.06 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=27.7
Q ss_pred ceeeccccchhHHHHHHHHHH-HHHHHHhcCchhHHHHHHHHHH
Q 028337 26 DVILWRRKNVTVGILLVTLAA-WVVFERSGYTLLSLVSSVLLLL 68 (210)
Q Consensus 26 dlllWrd~~~Sg~vf~~~~~~-~~L~~~~~~s~ls~~s~~~l~~ 68 (210)
-++.+||+.++...++..... -.++.+.+..++.+.--+...+
T Consensus 21 ~vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~qi~VYaG 64 (88)
T PRK06433 21 GVVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVG 64 (88)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356789999999888866552 2345566777766555444433
No 33
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=26.13 E-value=3.1e+02 Score=25.01 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHH
Q 028337 158 IVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEE 194 (210)
Q Consensus 158 ~~FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~k 194 (210)
=+.+.|..+.+++.. +....++-++++..+++++|
T Consensus 39 RlIL~PLsikQ~KS~--~KM~~LQPemqkk~~eIqeK 73 (375)
T PRK02654 39 RFALYPLSAGSIRNM--RRMKIAQPVMQKRQAEIQER 73 (375)
T ss_pred HHHHHHhHHHHHHHH--HHHHHhCchhhhHHHHHHHH
Confidence 346789988888765 22333334444444444443
No 34
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=25.83 E-value=1.3e+02 Score=22.00 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=28.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhH
Q 028337 161 TLPALYERYEDHIDKYAILGYRKLRQLYVKIDE 193 (210)
Q Consensus 161 TlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~ 193 (210)
+.=-+|.+|+++-|+....+.+++.+.++..++
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999999999888888887765
No 35
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=25.74 E-value=7.4e+02 Score=25.42 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=14.1
Q ss_pred HHHHhcC--chhHHHHHHHHHHHHHH
Q 028337 49 VFERSGY--TLLSLVSSVLLLLIAIL 72 (210)
Q Consensus 49 L~~~~~~--s~ls~~s~~~l~~l~~~ 72 (210)
++.+.++ +.+|+.+.++.+++++.
T Consensus 375 ~m~~~g~slN~~SL~gl~laiG~lVD 400 (1021)
T PF00873_consen 375 FMYLFGISLNIMSLAGLILAIGMLVD 400 (1021)
T ss_dssp HHHHTTTTBEHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCchHHHHHhHHHhcccccc
Confidence 3444443 55777776666666654
No 36
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=24.25 E-value=4.2e+02 Score=28.00 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 028337 127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAIL 179 (210)
Q Consensus 127 ~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~~ID~~~~~ 179 (210)
...+-.+++.|+++++ +|+++.|.++..++++..=..++++..-|..-+.+
T Consensus 159 ~i~l~~~v~Swifg~~--~fs~~slffii~~~~~vY~~~~~rv~rnird~v~~ 209 (1227)
T COG5038 159 AIVLIGSVASWIFGYL--GFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQ 209 (1227)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666655 37788899888888888777788877777655543
No 37
>PF10332 DUF2418: Protein of unknown function (DUF2418); InterPro: IPR018819 This entry represents the conserved 100 residue central region from a family of proteins found in fungi. It carries a characteristic EYD sequence motif. The function is not known.
Probab=23.91 E-value=2.9e+02 Score=20.15 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccchhhh
Q 028337 147 DFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILE 205 (210)
Q Consensus 147 s~~tLl~i~~v~~FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~ 205 (210)
+.++.+.+.++..+.+=.+-.+|+.++..-.-..++-++| .|+|++ -||....
T Consensus 39 ~~~~~~~~~~l~s~~l~~li~~f~~~ikD~~Ii~~ev~~E----Yn~KfV--~Pr~~~~ 91 (99)
T PF10332_consen 39 TSFTTLFLMVLLSFQLYFLISRFEQLIKDKQIIHKEVMHE----YNTKFV--KPRTNPL 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----Hhcccc--CCCCCcc
Confidence 3444445555566666667778888877655555444444 666665 3664433
No 38
>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q.
Probab=23.55 E-value=46 Score=24.32 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=28.3
Q ss_pred HhchhHHHHHHHHHH--HHHHHHHHHHhHHHHHhccchhhhhh
Q 028337 167 ERYEDHIDKYAILGY--RKLRQLYVKIDEEFVSKVRKWILEKQ 207 (210)
Q Consensus 167 ~~~q~~ID~~~~~~~--~~~~~~~~~~~~kv~~kip~~~~~~k 207 (210)
|+|+.+.-.+++... +.+.++|.++.+ +|...|+..+
T Consensus 26 e~yk~qFs~yik~gi~p~~le~~y~~~h~----~Ir~dP~~~~ 64 (94)
T PF14204_consen 26 EKYKRQFSKYIKKGIEPDDLEEMYKKAHA----AIREDPSPKK 64 (94)
T ss_dssp STCSHHHHHHHHHHCSSSHHHHHHHHHHH----CCCHSCCCCC
T ss_pred HHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHHhCccccc
Confidence 568888888888666 588999997777 8877666543
No 39
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=22.43 E-value=3.1e+02 Score=22.00 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=9.6
Q ss_pred HHHHhchhHHHHHHHHHH
Q 028337 164 ALYERYEDHIDKYAILGY 181 (210)
Q Consensus 164 ~lY~~~q~~ID~~~~~~~ 181 (210)
..|..-+.+||...+.+.
T Consensus 21 kaYv~eKK~Insl~~~v~ 38 (160)
T PF03978_consen 21 KAYVEEKKEINSLIEDVS 38 (160)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555665555443
No 40
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=22.12 E-value=3.4e+02 Score=20.15 Aligned_cols=26 Identities=23% Similarity=0.467 Sum_probs=21.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Q 028337 141 FVGGLTDFLTLGYTSLVIVLTLPALY 166 (210)
Q Consensus 141 ~lG~~~s~~tLl~i~~v~~FTlP~lY 166 (210)
++|..|--.|++|+...++|-+|+--
T Consensus 17 F~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 17 FFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35777778899999999999999743
No 41
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=21.54 E-value=4.5e+02 Score=23.09 Aligned_cols=57 Identities=18% Similarity=0.009 Sum_probs=41.5
Q ss_pred HhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 028337 116 VSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHID 174 (210)
Q Consensus 116 ~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~~ID 174 (210)
...++-.++++.+ +....+..+.++|-.++.+-.+...++..+|+=.--...+++|+
T Consensus 145 gV~~V~~~~~wv~--rL~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIe 201 (297)
T COG2177 145 GVAEVDDDREWVD--RLFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIE 201 (297)
T ss_pred cceehhcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3334444455554 34567888888888888888888888999999877777777787
No 42
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=21.54 E-value=5.4e+02 Score=22.30 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=18.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhchhhcccc
Q 028337 93 HLSEEMVNEVAALIRTRVNDFLSVSQDMALGKN 125 (210)
Q Consensus 93 ~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d 125 (210)
.+++|+-.+..+.-.+..-...+.+++..--++
T Consensus 155 ~~s~eeq~~yI~~nyP~~~~~F~~l~nf~iY~~ 187 (303)
T PF10327_consen 155 GMSREEQMEYIRENYPEYLSWFSSLPNFAIYDF 187 (303)
T ss_pred CCCHHHHHHHHHhhCCchhHHHhcCCCEEEEeC
Confidence 455666556666555555555555555554443
No 43
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=20.62 E-value=2.7e+02 Score=23.72 Aligned_cols=43 Identities=19% Similarity=0.382 Sum_probs=26.8
Q ss_pred HHHHHHHHHhchhhcc--cchHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 028337 108 TRVNDFLSVSQDMALG--KNSRLFFRVALYLWLISFVGGLTDFLTLGYTS 155 (210)
Q Consensus 108 ~~in~~l~~~r~l~~~--~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~ 155 (210)
..++..-..++.+|-+ +|..+ -..+|++-.+|+++ ..||.|+|
T Consensus 174 ~~l~~le~~l~~lF~~~k~d~~d----psl~Wv~l~iG~iI-i~tLtYvG 218 (232)
T PF09577_consen 174 EALEQLEEDLQKLFDGVKEDEAD----PSLIWVMLSIGGII-IATLTYVG 218 (232)
T ss_pred HHHHHHHHHHHHHhCcccccccc----cchHHHHHHHHHHH-HHHHHHHH
Confidence 3445555677777777 23221 13368777888887 77777777
No 44
>PF04917 Shufflon_N: Bacterial shufflon protein, N-terminal constant region; InterPro: IPR007001 This domain represents the high-similarity N-terminal constant region shared by shufflon proteins. Shufflon proteins are created as a result of a clustered inversion region. The proteins retain a constant N-terminal domain, with different C-terminal domains.
Probab=20.51 E-value=5.8e+02 Score=23.09 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhchhHHH
Q 028337 154 TSLVIVLTLPALYERYEDHID 174 (210)
Q Consensus 154 i~~v~~FTlP~lY~~~q~~ID 174 (210)
...+++..+|..++.+++..|
T Consensus 16 aL~I~~~~~~~~~~~~~~~~~ 36 (356)
T PF04917_consen 16 ALAILALMAPGGAQWMSDYLE 36 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555554444444
No 45
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.50 E-value=1.7e+02 Score=24.09 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=1.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028337 148 FLTLGYTSLVIVLTLPALYER 168 (210)
Q Consensus 148 ~~tLl~i~~v~~FTlP~lY~~ 168 (210)
+|.++++++++.+..+.+-..
T Consensus 37 GWyil~~~I~ly~l~qkl~~~ 57 (190)
T PF06936_consen 37 GWYILFGCILLYLLWQKLSPS 57 (190)
T ss_dssp -------------------HH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777765554
No 46
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=20.50 E-value=79 Score=30.90 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.7
Q ss_pred cccceeeccccchhHHHHHHHHHHHH
Q 028337 23 LAADVILWRRKNVTVGILLVTLAAWV 48 (210)
Q Consensus 23 ~v~dlllWrd~~~Sg~vf~~~~~~~~ 48 (210)
-++.+-.||+|++|+...++=++.|+
T Consensus 114 hi~RLrSW~eprRT~~fc~vYf~aW~ 139 (642)
T PF11696_consen 114 HIARLRSWREPRRTAAFCAVYFIAWL 139 (642)
T ss_pred HHHHhhhhcccchHHHHHHHHHHHHH
Confidence 36788899999999987776666555
Done!