Query 028337
Match_columns 210
No_of_seqs 110 out of 483
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 16:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.3 5.6E-08 1.9E-12 67.7 -0.5 58 74-131 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.2 6E-05 2.1E-09 49.8 0.3 35 91-125 26-60 (60)
3 2knc_A Integrin alpha-IIB; tra 40.8 61 0.0021 20.3 4.8 30 58-89 17-46 (54)
4 1oef_A Apolipoprotein E; glyco 39.0 12 0.00042 19.7 1.2 22 173-194 3-24 (26)
5 1w53_A Phosphoserine phosphata 37.6 44 0.0015 22.9 4.1 37 161-197 3-39 (84)
6 2l8s_A Integrin alpha-1; trans 33.2 90 0.0031 19.5 4.8 29 58-88 14-42 (54)
7 3ci9_A Heat shock factor-bindi 29.5 98 0.0034 18.8 4.5 36 170-205 4-39 (48)
8 1nvp_B Transcription initiatio 24.4 55 0.0019 20.6 2.6 32 168-201 12-43 (57)
9 2wuj_A Septum site-determining 22.9 1.1E+02 0.0039 18.9 3.9 25 169-193 21-45 (57)
10 3vou_A ION transport 2 domain 19.3 2.6E+02 0.0091 20.1 6.6 34 160-193 105-138 (148)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.32 E-value=5.6e-08 Score=67.74 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCC--CCCC-----ccccCHHHHHHHHHHHHHHHHHHHHHhchhhcccchHHHHH
Q 028337 74 LWAKAAAILNRPA--PPLP-----ELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFR 131 (210)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~-----~~~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk 131 (210)
+|..+.+.++++. +|+. |+++|+|.+++.++.+...+|.++.++|+++++||+.+|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 4666777788876 4542 89999999999999999999999999999999999999875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.20 E-value=6e-05 Score=49.78 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=34.1
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhchhhcccc
Q 028337 91 ELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKN 125 (210)
Q Consensus 91 ~~~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d 125 (210)
|+++|+|.+++.++.+..++|.++.++|++++++|
T Consensus 26 di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 26 EVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp HHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 89999999999999999999999999999999987
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.85 E-value=61 Score=20.30 Aligned_cols=30 Identities=33% Similarity=0.779 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 028337 58 LSLVSSVLLLLIAILFLWAKAAAILNRPAPPL 89 (210)
Q Consensus 58 ls~~s~~~l~~l~~~f~~~~~~~~~~~~~~~~ 89 (210)
+|+++-++++++.+..+|. +++++|..+|.
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~~ 46 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCCc
Confidence 3555555555555555563 47888886554
No 4
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=39.04 E-value=12 Score=19.67 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 028337 173 IDKYAILGYRKLRQLYVKIDEE 194 (210)
Q Consensus 173 ID~~~~~~~~~~~~~~~~~~~k 194 (210)
++++++.+++++.+.++++.+.
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhh
Confidence 4567888888888888887763
No 5
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=37.63 E-value=44 Score=22.89 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=29.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 028337 161 TLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVS 197 (210)
Q Consensus 161 TlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~ 197 (210)
+.+.+.++|++.+|.++..-.++.-.+.+++...++.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~ie 39 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHH
Confidence 3567889999999999998888777777877776653
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=33.25 E-value=90 Score=19.53 Aligned_cols=29 Identities=38% Similarity=0.709 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 028337 58 LSLVSSVLLLLIAILFLWAKAAAILNRPAPP 88 (210)
Q Consensus 58 ls~~s~~~l~~l~~~f~~~~~~~~~~~~~~~ 88 (210)
+|+++-++++++.+..+|. +++++|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 3555555555555555563 4788888654
No 7
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=29.47 E-value=98 Score=18.81 Aligned_cols=36 Identities=3% Similarity=0.172 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHhccchhhh
Q 028337 170 EDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILE 205 (210)
Q Consensus 170 q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~ 205 (210)
..++-.+++....++++..+.+.+.++.||-.+..+
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~R 39 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSR 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345556666666777777777777777777655544
No 8
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=24.42 E-value=55 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=24.7
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 028337 168 RYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK 201 (210)
Q Consensus 168 ~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~ 201 (210)
-|+..||..++..+..+.+ +-+++.+++.+.+
T Consensus 12 vY~~VIedVI~~vr~~F~~--~Gvde~vL~eLk~ 43 (57)
T 1nvp_B 12 LYRSVIEDVINDVRDIFLD--DGVDEQVLMELKT 43 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 3678899999999987776 4677888876654
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.89 E-value=1.1e+02 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhH
Q 028337 169 YEDHIDKYAILGYRKLRQLYVKIDE 193 (210)
Q Consensus 169 ~q~~ID~~~~~~~~~~~~~~~~~~~ 193 (210)
.++++|.++..+...+...++...+
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~ 45 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTE 45 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999998888877776544
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=19.27 E-value=2.6e+02 Score=20.15 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=25.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhH
Q 028337 160 LTLPALYERYEDHIDKYAILGYRKLRQLYVKIDE 193 (210)
Q Consensus 160 FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~ 193 (210)
+....+.++.+++.|+.-....+++++..+++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~ 138 (148)
T 3vou_A 105 VQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE 138 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888888877777766
Done!