Query 028337
Match_columns 210
No_of_seqs 110 out of 483
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 16:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028337.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028337hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 26.0 1.2E+02 0.0088 22.6 7.8 31 155-185 142-176 (262)
2 d2je6a2 d.101.1.1 (A:192-275) 25.3 47 0.0034 20.2 4.3 25 170-194 57-81 (84)
3 d1nvpb_ a.32.1.1 (B:) Large ch 25.1 27 0.002 19.4 2.6 36 161-201 1-36 (43)
4 d1t33a2 a.121.1.1 (A:89-220) P 21.4 1.1E+02 0.0082 20.5 7.6 55 58-119 76-132 (132)
5 d1i5za1 a.4.5.4 (A:138-206) Ca 20.6 36 0.0026 20.0 2.8 31 91-121 27-57 (69)
6 d1w53a_ a.186.1.2 (A:) Phospho 19.6 51 0.0037 20.9 3.5 34 164-197 6-39 (84)
7 d1nh2b_ a.32.1.1 (B:) Large ch 18.1 30 0.0022 19.5 1.8 33 167-201 6-38 (46)
8 d2nn6e2 d.101.1.1 (E:192-285) 17.6 61 0.0044 20.3 3.6 24 170-193 58-81 (94)
9 d1cjba_ c.61.1.1 (A:) Hypoxant 14.7 16 0.0012 27.5 -0.0 31 159-189 28-65 (228)
10 d1h3la_ a.177.1.1 (A:) Sigma f 14.5 1.1E+02 0.0083 17.6 5.1 40 164-203 11-53 (75)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.00 E-value=1.2e+02 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=20.9
Q ss_pred HHHHHHHHHH----HHHhchhHHHHHHHHHHHHHH
Q 028337 155 SLVIVLTLPA----LYERYEDHIDKYAILGYRKLR 185 (210)
Q Consensus 155 ~~v~~FTlP~----lY~~~q~~ID~~~~~~~~~~~ 185 (210)
+.+.+.++|. +|++++++.|..++.+...++
T Consensus 142 ~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~ 176 (262)
T d1h2vc1 142 VYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLK 176 (262)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4456667674 577888888888877665543
No 2
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.32 E-value=47 Score=20.19 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHH
Q 028337 170 EDHIDKYAILGYRKLRQLYVKIDEE 194 (210)
Q Consensus 170 q~~ID~~~~~~~~~~~~~~~~~~~k 194 (210)
+++|++.++.+.+..++.++.+++.
T Consensus 57 ~~~i~~~i~~A~~~~~~l~~~l~~~ 81 (84)
T d2je6a2 57 LQDIDQAENTARSTAVKLLEELKKH 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988773
No 3
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.07 E-value=27 Score=19.44 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 028337 161 TLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK 201 (210)
Q Consensus 161 TlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~ 201 (210)
|+|.+| +..|+..++..+....+- -+++.+++.+.+
T Consensus 1 tV~kvY---~~VIedVI~~vR~~F~~~--GvDe~vL~eLk~ 36 (43)
T d1nvpb_ 1 TVPKLY---RSVIEDVINDVRDIFLDD--GVDEQVLMELKT 36 (43)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHH--TCCHHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHc--CCcHHHHHHHHH
Confidence 355555 678999999999877773 578878776654
No 4
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=21.40 E-value=1.1e+02 Score=20.47 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHhCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHhch
Q 028337 58 LSLVSSVLLLLIAILFLWAK--AAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQD 119 (210)
Q Consensus 58 ls~~s~~~l~~l~~~f~~~~--~~~~~~~~~~~~~~~~isee~v~~~~~~v~~~in~~l~~~r~ 119 (210)
-...|-..+++-+..|.... +...+||.. +.++.++++.+.+..++...++-+|+
T Consensus 76 ~~~~~~~sivGq~l~f~var~~~l~~lgw~~-------~~~~~~~~i~~~i~~~~~~lL~GL~~ 132 (132)
T d1t33a2 76 RMILHTHALLGEVLAFRLGKETILLRTGWPQ-------FDEEKAELIYQTVTCHIDLILHGLTQ 132 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHTCSS-------CCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------CCHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34455555556666654332 345667773 44888999999999999888887763
No 5
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.56 E-value=36 Score=20.04 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=27.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhchhh
Q 028337 91 ELHLSEEMVNEVAALIRTRVNDFLSVSQDMA 121 (210)
Q Consensus 91 ~~~isee~v~~~~~~v~~~in~~l~~~r~l~ 121 (210)
++.++++++.+++..-++.+|+.+..+++--
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5779999999999999999999999988643
No 6
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=19.55 E-value=51 Score=20.90 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=24.7
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 028337 164 ALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVS 197 (210)
Q Consensus 164 ~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~ 197 (210)
.+.++|++.++.++..-.++.-...+++..+++.
T Consensus 6 ~~~~~Y~~iL~~Yl~~~~E~~Ly~~~~fsre~ie 39 (84)
T d1w53a_ 6 VIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3567899999999887666666666777666554
No 7
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.07 E-value=30 Score=19.52 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=25.2
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 028337 167 ERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK 201 (210)
Q Consensus 167 ~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~ 201 (210)
.-|+..||..++..+....+- -+++.+++.+.+
T Consensus 6 ~vY~~VI~dVI~~vR~dF~~~--Gvde~vL~eLk~ 38 (46)
T d1nh2b_ 6 RVYEIIVESVVNEVREDFENA--GIDEQTLQDLKN 38 (46)
T ss_dssp HHHHHHHHHHHHHTHHHHHHT--TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHH
Confidence 457889999999999877764 378888876654
No 8
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.65 E-value=61 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Q 028337 170 EDHIDKYAILGYRKLRQLYVKIDE 193 (210)
Q Consensus 170 q~~ID~~~~~~~~~~~~~~~~~~~ 193 (210)
.++|++.++.+....+++.+.+++
T Consensus 58 ~~~i~~~i~~A~~~~~el~~~l~~ 81 (94)
T d2nn6e2 58 PESIFEMMETGKRVGKVLHASLQS 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999988887
No 9
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=14.68 E-value=16 Score=27.48 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=22.9
Q ss_pred HHHHHHHHHhc-------hhHHHHHHHHHHHHHHHHHH
Q 028337 159 VLTLPALYERY-------EDHIDKYAILGYRKLRQLYV 189 (210)
Q Consensus 159 ~FTlP~lY~~~-------q~~ID~~~~~~~~~~~~~~~ 189 (210)
+|++|..|++| +++|.+.++++..++.+.|+
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y~ 65 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYN 65 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHcC
Confidence 47888888877 56777777777777766653
No 10
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=14.51 E-value=1.1e+02 Score=17.58 Aligned_cols=40 Identities=8% Similarity=-0.032 Sum_probs=29.2
Q ss_pred HHHHhchhHHHHHHHHHH---HHHHHHHHHHhHHHHHhccchh
Q 028337 164 ALYERYEDHIDKYAILGY---RKLRQLYVKIDEEFVSKVRKWI 203 (210)
Q Consensus 164 ~lY~~~q~~ID~~~~~~~---~~~~~~~~~~~~kv~~kip~~~ 203 (210)
.+|..|++.+-.++-... +.+++..+.+--++.+++|+..
T Consensus 11 ~~~~~y~~~l~~~~~~~~~d~~~aeDivQd~f~~~~~~~~~~~ 53 (75)
T d1h3la_ 11 RDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFR 53 (75)
T ss_dssp HHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcC
Confidence 356777777777666555 6777888888888888888743
Done!