Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>028339
MATSSSSRRGWMSNIQSIASRVYFFLIILQIPLFRIPCRAGMCSTPIHVTSSQLIASEIF
PVPVIKGLLYPGAIVNGLVNNRTVARWDDLLSIYNLISVKEASAVTDLQCLEVLAGSYFS
VAGALVGILKPSRMSMFGTLLVIWGLIKEGILGKPGNTDPSQSVYVYPTMLIAVLCAFSS
IKYDVKKVRRIVPARPIAKPVASSSKSKLK

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028339
        (210 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2148032 - symbol:AT5G11280 "AT5G11280" species...   794  5.4e-79   1
TAIR|locus:2016329 - symbol:AT1G80200 "AT1G80200" species...   294  1.6e-32   2


>TAIR|locus:2148032 [details] [associations]
            symbol:AT5G11280 "AT5G11280" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 EMBL:AY045872 EMBL:AY113954
            IPI:IPI00538254 RefSeq:NP_568247.1 UniGene:At.20347 STRING:Q94AQ7
            PRIDE:Q94AQ7 EnsemblPlants:AT5G11280.1 GeneID:830998
            KEGG:ath:AT5G11280 TAIR:At5g11280 InParanoid:Q94AQ7 OMA:GRMSMFG
            PhylomeDB:Q94AQ7 ProtClustDB:CLSN2681897 Genevestigator:Q94AQ7
            Uniprot:Q94AQ7
        Length = 209

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 150/210 (71%), Positives = 180/210 (85%)

Query:     1 MATSSSSRRGWMSNIQSIASRVYFFLIILQIPLFRIPCRAGMCSTPIHVTSSQLIASEIF 60
             MA    S+ GW+    S+AS VYF LI+ QIPLFR+PCR+GMCS+PIHVTSSQLI+SEIF
Sbjct:     1 MANPGQSK-GWIKKWTSMASSVYFVLILFQIPLFRVPCRSGMCSSPIHVTSSQLISSEIF 59

Query:    61 PVPVIKGLLYPGAIVNGLVNNRTVARWDDLLSIYNLISVKEASAVTDLQCLEVLAGSYFS 120
             PVP+IK LLYPGA+VNGL  N T  +W+++L IYNL +VKEASAVTDLQ LEVLAGSYFS
Sbjct:    60 PVPMIKALLYPGAVVNGLAINMTFPKWENVLDIYNLTNVKEASAVTDLQRLEVLAGSYFS 119

Query:   121 VAGALVGILKPSRMSMFGTLLVIWGLIKEGILGKPGNTDPSQSVYVYPTMLIAVLCAFSS 180
             VAGA VG+LKP RMSMFG+LL++WGL+KEGILGKP NTDP+++VYVYPTM++A++CAFS 
Sbjct:   120 VAGAFVGLLKPGRMSMFGSLLLVWGLVKEGILGKPVNTDPAKTVYVYPTMVLAMICAFSM 179

Query:   181 IKYDVKKVRRIVPARPIAKPVASSSKSKLK 210
             IKYD++K  R  PARPIAKP+ SSSKSKLK
Sbjct:   180 IKYDLRKATRAAPARPIAKPLMSSSKSKLK 209


>TAIR|locus:2016329 [details] [associations]
            symbol:AT1G80200 "AT1G80200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684 IPI:IPI00532082
            RefSeq:NP_178137.1 UniGene:At.33958 UniGene:At.33965
            UniGene:At.50812 PRIDE:F4HS38 EnsemblPlants:AT1G80200.1
            GeneID:844360 KEGG:ath:AT1G80200 OMA:NSARSIH Uniprot:F4HS38
        Length = 234

 Score = 294 (108.6 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 64/168 (38%), Positives = 100/168 (59%)

Query:    36 IPCRAGMCSTPIHVTSSQLIASEIFPVPVIKGLLYPGAIVNGLVNNRTVARWDDLLSIYN 95
             + CR   C TP+ V SS+LIA+++ P  ++K LLYPGAI   L     +  +  L   Y+
Sbjct:    62 VACRNKSCETPLEVISSELIATDLIPSSLVKTLLYPGAITKSLFAGSKIPSYHHLFQFYS 121

Query:    96 LISV-KEASAVTDLQCLEVLAGSYFSVAGALVGILKPSRMSMFGTLLVIWGLIKEGILGK 154
                + + +S  TD+  LEV AGS   + GAL+ + KP+R++  GTLL+ WGLI++ +L  
Sbjct:   122 FDGMYRTSSFATDIHHLEVFAGSCLCLLGALLNLFKPTRITFIGTLLISWGLIRDILLLD 181

Query:   155 PGNT--DPSQ-SVYVYPTMLIAVLCAFSSIKYDVKKVRRIVPARPIAK 199
               +    P + SV VYPT+ +A L AF S++ DV+K+ R   +  ++K
Sbjct:   182 SAHDWISPHRNSVRVYPTLFLASLSAFLSMRSDVRKIIRCCTSITLSK 229

 Score = 77 (32.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query:     7 SRRGWMSNIQSIASRVYFFLIILQIPLFRI 36
             S++ W S I  IAS ++  LI+ QIPLFR+
Sbjct:     4 SKKKWASIISVIASSLFSLLIVFQIPLFRV 33


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       210   0.00080  112 3  11 22  0.45    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  153 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.46u 0.10s 17.56t   Elapsed:  00:00:01
  Total cpu time:  17.46u 0.10s 17.56t   Elapsed:  00:00:01
  Start:  Mon May 20 16:06:41 2013   End:  Mon May 20 16:06:42 2013

Back to top