BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028339
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O51769|SBCD_BORBU Nuclease SbcCD subunit D OS=Borrelia burgdorferi (strain ATCC 35210
           / B31 / CIP 102532 / DSM 4680) GN=sbcD PE=3 SV=1
          Length = 413

 Score = 34.3 bits (77), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 47  IHVTSSQLIASEIFPVPVIKGLLYPGAIVNGLVNNRTVARWDDLLSIYNLISVKEA 102
           +H   ++LI  E FPVP+   L++    +N +++    ++ ++  +IY  I + EA
Sbjct: 262 LHFNDNKLILQEAFPVPIFNKLIFAKGSLNEVLDFLANSKKEESFTIYLKIELNEA 317


>sp|Q5LN53|TDH_RUEPO L-threonine 3-dehydrogenase OS=Ruegeria pomeroyi (strain ATCC
          700808 / DSM 15171 / DSS-3) GN=tdh PE=3 SV=2
          Length = 342

 Score = 33.1 bits (74), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 39 RAGMCSTPIHVTSSQLIASEIFPVPVIKGLLYPGAIVN 76
          + G+C T IH+ +    A+   PVP+I G  + G IV 
Sbjct: 34 KTGICGTDIHIWNWDEWAAHTVPVPMITGHEFAGEIVE 71


>sp|Q16P90|MOCO3_AEDAE Molybdenum cofactor sulfurase 3 OS=Aedes aegypti GN=mal3 PE=3 SV=1
          Length = 764

 Score = 30.8 bits (68), Expect = 6.4,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 21/123 (17%)

Query: 79  VNNRTVARWDDLLSIYNLISVKEASAVTDLQCLEVLAGSY-FSVAGALVGILKPSRMSMF 137
           V  R +  ++   S Y+LI     +A      L++LA SY F+  GA V  LK S  S+ 
Sbjct: 73  VRYRVLRHFNTRSSEYSLIFTSGTTA-----SLKLLAESYEFAPEGAFV-YLKDSHTSVL 126

Query: 138 GTLLV-----IWGLIKEGILGKPGNTDPS----QSVYVYPTMLIAVLCAFSSIKYDVKKV 188
           G   +     I+ + +E +L +  +++ S     S+ V+P       C F+ +KY ++ V
Sbjct: 127 GMREIVGTERIYPVEREQLLKELDSSERSDSEHSSLIVFPAQ-----CNFNGVKYPLELV 181

Query: 189 RRI 191
           R+I
Sbjct: 182 RKI 184


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,100,164
Number of Sequences: 539616
Number of extensions: 2662929
Number of successful extensions: 6053
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6051
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)