Query 028339
Match_columns 210
No_of_seqs 21 out of 23
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 16:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h63_H Mediator of RNA polymer 27.4 10 0.00035 31.6 -0.7 36 74-109 30-65 (200)
2 4h86_A Peroxiredoxin type-2; o 22.4 21 0.00071 29.8 0.3 48 40-94 51-100 (199)
3 1jb0_M Photosystem 1 reaction 17.1 61 0.0021 20.3 1.5 19 165-183 7-25 (31)
4 2yfv_C SCM3, KLLA0F05115P; cel 14.8 73 0.0025 22.9 1.7 26 86-113 37-62 (63)
5 2jwa_A Receptor tyrosine-prote 13.9 1.4E+02 0.0049 19.8 2.8 25 118-148 11-35 (44)
6 2l7s_A Adrenomedullin, ADM, AM 12.6 66 0.0023 22.3 0.9 14 31-44 8-22 (53)
7 2lur_A Kalata; beta hairpin, p 11.4 81 0.0028 19.5 0.9 15 37-51 4-18 (29)
8 2i68_A Protein EMRE; transmemb 11.3 1.8E+02 0.0061 22.3 3.1 16 132-147 84-99 (137)
9 1a70_A Ferredoxin; iron-sulfur 10.7 89 0.003 21.7 1.1 17 29-46 31-47 (97)
10 1czp_A Ferredoxin I; [2Fe-2S] 10.0 97 0.0033 21.5 1.1 22 29-51 33-55 (98)
No 1
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=27.35 E-value=10 Score=31.62 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=25.9
Q ss_pred HhhhhhcCCccCChHHHHHhhhhcccccccccccce
Q 028339 74 IVNGLVNNRTVARWDDLLSIYNLISVKEASAVTDLQ 109 (210)
Q Consensus 74 ~~~~l~~~~t~Psw~~Ll~~ynlt~~k~~sa~tDlq 109 (210)
+...|.+.-..|.|.+|+++||+....-.+-+..|+
T Consensus 30 l~~~l~~~~~lp~W~sll~q~~vl~~qL~sl~~~L~ 65 (200)
T 4h63_H 30 FLAILHQSESLSPWPTIHKNFNILLSQIHSLSNNLA 65 (200)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556799999999999998766666555553
No 2
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=22.42 E-value=21 Score=29.82 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=34.5
Q ss_pred CCccCCcceeehhhhhhcccCchhhHhhhc--cchhHhhhhhcCCccCChHHHHHhh
Q 028339 40 AGMCSTPIHVTSSQLIASEIFPVPVIKGLL--YPGAIVNGLVNNRTVARWDDLLSIY 94 (210)
Q Consensus 40 ~G~CttPleVtSsqLiaseifP~~~VKaLL--YPGA~~~~l~~~~t~Psw~~Ll~~y 94 (210)
.-.|..|.+|..++++++. =|.+| +|||+.-. |...-+|.|.+.+|.+
T Consensus 51 ~~~c~~P~~v~ls~~~~k~------KkVVLf~vPGAFTPt-CS~~hlPgf~~~~d~~ 100 (199)
T 4h86_A 51 SESCKMPQTVEWSKLISEN------KKVIITGAPAAFSPT-CTVSHIPGYINYLDEL 100 (199)
T ss_dssp SGGGTSCEEEEHHHHHHHC------SEEEEEECSCTTCHH-HHHTTHHHHHHHHHHH
T ss_pred cccCCCCeeeEHHHHhcCC------CeEEEEEeCCCcCCc-CChhhChHHHHHHHHH
Confidence 4579999999999998743 12233 79998755 3445589998877754
No 3
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=17.12 E-value=61 Score=20.30 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=15.9
Q ss_pred eehhhHHHHHHHHhhhchh
Q 028339 165 YVYPTMLIAVLCAFSSIKY 183 (210)
Q Consensus 165 ~vyPtm~iAlicAF~si~~ 183 (210)
-+|=++++|++.+|+++|.
T Consensus 7 Qi~iAL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 7 QVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999885
No 4
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=14.84 E-value=73 Score=22.92 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=21.6
Q ss_pred ChHHHHHhhhhcccccccccccceeeee
Q 028339 86 RWDDLLSIYNLISVKEASAVTDLQCLEV 113 (210)
Q Consensus 86 sw~~Ll~~ynlt~~k~~sa~tDlqrLEv 113 (210)
-|+++++.|. +....+-+.|||-=|+
T Consensus 37 ~w~~Ii~KY~--~~edqgD~IDL~TGeI 62 (63)
T 2yfv_C 37 VWSQIIQKYE--SIDNQGDVIDLQTGEV 62 (63)
T ss_dssp HHHHHHHHHH--SGGGSSCCBCTTTCSB
T ss_pred HHHHHHHHHh--cccCCCceeeeccccc
Confidence 4999999996 4778999999997665
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.88 E-value=1.4e+02 Score=19.76 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhcCCCcchhhHHHHHHHHHHH
Q 028339 118 YFSVAGALVGILKPSRMSMFGTLLVIWGLIK 148 (210)
Q Consensus 118 Yf~VaGAl~g~lkpgRmS~FGtLliiWglvk 148 (210)
--++||+.+|++ .+-.+.+.|+++.
T Consensus 11 ~~~Ia~~vVGvl------l~vi~~l~~~~~~ 35 (44)
T 2jwa_A 11 LTSIISAVVGIL------LVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHH------HHHHHHHHHHhhe
Confidence 356888888877 5666666666654
No 6
>2l7s_A Adrenomedullin, ADM, AM; hormone, PRE-Pro-adrenomedullin; NMR {Homo sapiens}
Probab=12.58 E-value=66 Score=22.34 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=11.5
Q ss_pred cCeee-eecCCCccC
Q 028339 31 IPLFR-IPCRAGMCS 44 (210)
Q Consensus 31 iPLFr-VpCr~G~Ct 44 (210)
+|.+| +-|+-|+|+
T Consensus 8 ~~~~r~~GC~LgTCq 22 (53)
T 2l7s_A 8 FQGLRSFGCRFGTCT 22 (53)
T ss_dssp SSSSSSCCCSSSSSS
T ss_pred hhhcccCCcceeeeh
Confidence 46666 999999997
No 7
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=11.38 E-value=81 Score=19.53 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=11.6
Q ss_pred ecCCCccCCcceeeh
Q 028339 37 PCRAGMCSTPIHVTS 51 (210)
Q Consensus 37 pCr~G~CttPleVtS 51 (210)
.|-.|.|.||=-+-|
T Consensus 4 tcv~g~cntpgc~cs 18 (29)
T 2lur_A 4 TCVGGTCNTPGCTCS 18 (29)
T ss_dssp CCTTSCCCBTTBEEE
T ss_pred cccCcccCCCCcEec
Confidence 588999999965544
No 8
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=11.29 E-value=1.8e+02 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=5.7
Q ss_pred CcchhhHHHHHHHHHH
Q 028339 132 SRMSMFGTLLVIWGLI 147 (210)
Q Consensus 132 gRmS~FGtLliiWglv 147 (210)
+...++|.++|+-|++
T Consensus 84 s~~~~~Gi~LIi~GV~ 99 (137)
T 2i68_A 84 DLPAIIGMMLICAGVL 99 (137)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 9
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=10.72 E-value=89 Score=21.70 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=13.2
Q ss_pred HhcCeeeeecCCCccCCc
Q 028339 29 LQIPLFRIPCRAGMCSTP 46 (210)
Q Consensus 29 fqiPLFrVpCr~G~CttP 46 (210)
-+++ +...|+.|.|.+=
T Consensus 31 ~gi~-i~~~C~~G~Cg~C 47 (97)
T 1a70_A 31 EGID-LPYSCRAGSCSSC 47 (97)
T ss_dssp TTCC-CCCSSSSSCSSTT
T ss_pred cCCC-cccCCCCcCCCCC
Confidence 3666 6788999999864
No 10
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=10.04 E-value=97 Score=21.46 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=15.2
Q ss_pred HhcCeeeeecCCCccCCc-ceeeh
Q 028339 29 LQIPLFRIPCRAGMCSTP-IHVTS 51 (210)
Q Consensus 29 fqiPLFrVpCr~G~CttP-leVtS 51 (210)
-+++ +...|+.|.|.+= ++|++
T Consensus 33 ~gi~-i~~~C~~G~Cg~C~v~v~~ 55 (98)
T 1czp_A 33 QGYD-LPFSCRAGACSTCAGKLVS 55 (98)
T ss_dssp TTCC-CCCSSSSSSSSTTEEEEEE
T ss_pred cCCC-ccCCCCCCCCCCCeEEEcc
Confidence 4666 6788999999874 34443
Done!