Query 028339
Match_columns 210
No_of_seqs 21 out of 23
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 16:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028339.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028339hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bs2b2 d.15.4.2 (B:1-106) Fum 33.4 5.9 0.00043 28.3 0.8 12 33-44 52-63 (106)
2 d1nekb2 d.15.4.2 (B:1-106) Suc 30.1 7.3 0.00053 27.5 0.9 12 34-45 51-62 (106)
3 d1kf6b2 d.15.4.2 (B:1-105) Fum 23.7 11 0.00082 26.5 0.9 12 34-45 53-64 (105)
4 d1emoa2 g.3.11.1 (A:2167-2205) 16.8 13 0.00097 23.0 -0.0 12 36-47 8-19 (39)
5 d1wria_ d.15.4.1 (A:) 2Fe-2S f 14.2 25 0.0018 23.4 0.9 11 36-46 35-45 (93)
6 d1awda_ d.15.4.1 (A:) 2Fe-2S f 14.0 25 0.0019 23.4 0.8 16 30-46 30-45 (94)
7 d1vl6a1 c.2.1.7 (A:155-376) Ma 14.0 40 0.0029 26.4 2.1 36 153-188 150-185 (222)
8 d1a70a_ d.15.4.1 (A:) 2Fe-2S f 11.6 33 0.0024 22.8 0.8 12 35-46 36-47 (97)
9 d1czpa_ d.15.4.1 (A:) 2Fe-2S f 11.0 36 0.0026 22.8 0.8 12 35-46 38-49 (98)
10 d2piaa3 d.15.4.2 (A:224-321) P 10.7 37 0.0027 22.7 0.9 23 29-52 41-64 (98)
No 1
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Probab=33.39 E-value=5.9 Score=28.26 Aligned_cols=12 Identities=50% Similarity=1.179 Sum_probs=10.3
Q ss_pred eeeeecCCCccC
Q 028339 33 LFRIPCRAGMCS 44 (210)
Q Consensus 33 LFrVpCr~G~Ct 44 (210)
=||-.||.|+|-
T Consensus 52 ~fr~sCr~giCG 63 (106)
T d2bs2b2 52 NFDFVCRAGICG 63 (106)
T ss_dssp CCCCSSSSSSSC
T ss_pred EEEeCcCCCCCC
Confidence 479999999984
No 2
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.09 E-value=7.3 Score=27.50 Aligned_cols=12 Identities=50% Similarity=1.317 Sum_probs=10.4
Q ss_pred eeeecCCCccCC
Q 028339 34 FRIPCRAGMCST 45 (210)
Q Consensus 34 FrVpCr~G~Ctt 45 (210)
||-.||.|+|-+
T Consensus 51 fr~sCr~giCGs 62 (106)
T d1nekb2 51 FRRSCREGVCGS 62 (106)
T ss_dssp CCCCSSSSCSCT
T ss_pred EEcCCCCCCCCc
Confidence 799999999864
No 3
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.68 E-value=11 Score=26.53 Aligned_cols=12 Identities=33% Similarity=1.118 Sum_probs=10.2
Q ss_pred eeeecCCCccCC
Q 028339 34 FRIPCRAGMCST 45 (210)
Q Consensus 34 FrVpCr~G~Ctt 45 (210)
||-.||.|+|-+
T Consensus 53 fr~sCr~giCGs 64 (105)
T d1kf6b2 53 YRWSCRMAICGS 64 (105)
T ss_dssp CCCCCSSSSSCC
T ss_pred EEeccCCCCCCC
Confidence 799999999853
No 4
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.84 E-value=13 Score=22.98 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=9.7
Q ss_pred eecCCCccCCcc
Q 028339 36 IPCRAGMCSTPI 47 (210)
Q Consensus 36 VpCr~G~CttPl 47 (210)
=||.+|+||+-+
T Consensus 8 npCGnGTCtNvi 19 (39)
T d1emoa2 8 NPCGNGTCKNVI 19 (39)
T ss_dssp CSSSSSCEEECS
T ss_pred CccCCceeeecc
Confidence 489999999743
No 5
>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}
Probab=14.23 E-value=25 Score=23.42 Aligned_cols=11 Identities=55% Similarity=1.138 Sum_probs=9.1
Q ss_pred eecCCCccCCc
Q 028339 36 IPCRAGMCSTP 46 (210)
Q Consensus 36 VpCr~G~CttP 46 (210)
..||.|.|.|=
T Consensus 35 ~~Cr~G~CgtC 45 (93)
T d1wria_ 35 LSCQAGACSTC 45 (93)
T ss_dssp CSSSSSSSSTT
T ss_pred EEeCCcccCcC
Confidence 46999999874
No 6
>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}
Probab=14.03 E-value=25 Score=23.39 Aligned_cols=16 Identities=44% Similarity=0.843 Sum_probs=12.1
Q ss_pred hcCeeeeecCCCccCCc
Q 028339 30 QIPLFRIPCRAGMCSTP 46 (210)
Q Consensus 30 qiPLFrVpCr~G~CttP 46 (210)
+|++ ...||.|+|.|=
T Consensus 30 Gi~i-~~~C~~G~CgtC 45 (94)
T d1awda_ 30 GLDL-PYSCRAGACSSC 45 (94)
T ss_dssp TCCC-CCSSSSSSSSTT
T ss_pred CCcE-EEecCCCccCCc
Confidence 4553 678999999874
No 7
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=13.98 E-value=40 Score=26.38 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCCCCCCCCceeehhhHHHHHHHHhhhchhhHHHh
Q 028339 153 GKPGNTDPSQSVYVYPTMLIAVLCAFSSIKYDVKKV 188 (210)
Q Consensus 153 ~k~~n~dp~~~v~vyPtm~iAlicAF~si~~Dv~Kv 188 (210)
|.|-..+-.+.+|+||.+.++++++=.-|..|+--.
T Consensus 150 Gsp~~p~Q~NN~yiFPGiglGal~~~aritd~m~~a 185 (222)
T d1vl6a1 150 GRSDHPNQVNNLLAFPGIMKGAVEKRSKITKNMLLS 185 (222)
T ss_dssp SCTTSSSBCCGGGTHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCCCCccCcceeecchHHHHHHHhccccchHHHHH
Confidence 667666668999999999999988866666666443
No 8
>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=11.62 E-value=33 Score=22.84 Aligned_cols=12 Identities=50% Similarity=0.963 Sum_probs=9.9
Q ss_pred eeecCCCccCCc
Q 028339 35 RIPCRAGMCSTP 46 (210)
Q Consensus 35 rVpCr~G~CttP 46 (210)
...||.|.|.|=
T Consensus 36 ~~~C~~G~CgtC 47 (97)
T d1a70a_ 36 PYSCRAGSCSSC 47 (97)
T ss_dssp CCSSSSSCSSTT
T ss_pred eeCCCcEEcCCC
Confidence 369999999874
No 9
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}
Probab=11.01 E-value=36 Score=22.83 Aligned_cols=12 Identities=58% Similarity=1.057 Sum_probs=9.6
Q ss_pred eeecCCCccCCc
Q 028339 35 RIPCRAGMCSTP 46 (210)
Q Consensus 35 rVpCr~G~CttP 46 (210)
.-.||.|.|.+=
T Consensus 38 p~~C~~G~CgtC 49 (98)
T d1czpa_ 38 PFSCRAGACSTC 49 (98)
T ss_dssp CCSSSSSSSSTT
T ss_pred EEecCCcccCCC
Confidence 458999999874
No 10
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=10.74 E-value=37 Score=22.73 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=14.8
Q ss_pred HhcCeeeeecCCCccCCcc-eeehh
Q 028339 29 LQIPLFRIPCRAGMCSTPI-HVTSS 52 (210)
Q Consensus 29 fqiPLFrVpCr~G~CttPl-eVtSs 52 (210)
-+++ ....||.|+|.+=. +|++-
T Consensus 41 ~Gi~-ip~~C~~G~CgtC~~~v~~G 64 (98)
T d2piaa3 41 ANVR-VPSSCESGTCGSCKTALCSG 64 (98)
T ss_dssp TTCC-CCCSCSSSSSCTTEEEEEES
T ss_pred cCCc-ccccCCccEeCCCEEEEEee
Confidence 3454 46789999998743 34443
Done!