BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028340
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1
Length = 198
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 96/139 (69%), Gaps = 4/139 (2%)
Query: 74 SSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDK 133
++ S S++ FL RLKTT R GW+ + PESIADHMYRMG++ ++ D P I++++
Sbjct: 3 AAKSLSIVPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKER 61
Query: 134 CIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGQGARAKEIDELW 190
C+K+A+VHD+AE+IVGDITP + + KEEK + E EA IT L +A+EI EL+
Sbjct: 62 CLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELF 121
Query: 191 MEYEENSTAEAKIVKDFDK 209
+EYE ST EAK VKD DK
Sbjct: 122 LEYESASTPEAKFVKDIDK 140
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1
Length = 200
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Query: 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMA 138
+++ F+ L +LK R GWV RN+ PES++DHMYRM +M L + DI +++++C+K+A
Sbjct: 3 NMLQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLA 61
Query: 139 IVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENST 198
+VHD+AE IVGDI P+D + K EK +RE++A+ ++ LL G R KEI LW EYE S+
Sbjct: 62 LVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSS 120
Query: 199 AEAKIVKDFDKV 210
EAK+VK+ D +
Sbjct: 121 PEAKLVKELDNL 132
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1
Length = 201
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 94/136 (69%), Gaps = 2/136 (1%)
Query: 74 SSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDK 133
SS+ S++ F+ L +LK R GW+ R V PES++DHMYRM +M ++ D +++D+
Sbjct: 8 SSAGKSLLQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTED-RKLNKDR 66
Query: 134 CIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEY 193
CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL + E+ +LW EY
Sbjct: 67 CIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEY 125
Query: 194 EENSTAEAKIVKDFDK 209
E TAEAK VK+ D+
Sbjct: 126 EHQFTAEAKFVKELDQ 141
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=hddc2 PE=3 SV=1
Length = 190
Score = 136 bits (343), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 89/140 (63%), Gaps = 8/140 (5%)
Query: 78 SSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADIPGID 130
S+ ++F +C +LKT KR GWV V PES++DHMYRM +MG LI D ID
Sbjct: 2 SNYLEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEID 61
Query: 131 RDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELW 190
+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI + L G KEI +LW
Sbjct: 62 KMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTLS-GEVGKEIFDLW 120
Query: 191 MEYEENSTAEAKIVKDFDKV 210
EYE+ T EA +VKDFDK
Sbjct: 121 QEYEDCKTNEALLVKDFDKF 140
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1
Length = 215
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 91/130 (70%), Gaps = 4/130 (3%)
Query: 83 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHD 142
FL++ LKT +R GWV ++ ESI+DHMYRMGL +++ D +DR+KCI++A+VHD
Sbjct: 32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHD 90
Query: 143 IAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQG---ARAKEIDELWMEYEENSTA 199
AE++VGDITP+D + KEEK +RE E + Y+C+ + + + ++EI + W+ YE+ +
Sbjct: 91 FAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQTCL 150
Query: 200 EAKIVKDFDK 209
E + VKD DK
Sbjct: 151 EGRYVKDIDK 160
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1
Length = 238
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
Query: 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139
++ FL++ +LK +R G++ + ESI+DHMYR+ ++ +++ D ++RDKC+++A+
Sbjct: 48 ILAFLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIAL 106
Query: 140 VHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGAR---AKEIDELWMEYEEN 196
VHDIAE++VGDITP D I KEEK +RE E I Y+C L + AKEI + W+ YE
Sbjct: 107 VHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENV 166
Query: 197 STAEAKIVKDFDK 209
++ EA+ VKD DK
Sbjct: 167 TSLEARYVKDIDK 179
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1
Length = 204
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 103/145 (71%), Gaps = 3/145 (2%)
Query: 66 SSVNGAAFSSSSS-SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMA 124
+SV+ A FS + S++ FL L +LK R GWV RNV PES++DHMYRM +M +++
Sbjct: 2 ASVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIK 61
Query: 125 DIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAK 184
D +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+ + +LL + R K
Sbjct: 62 D-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-K 119
Query: 185 EIDELWMEYEENSTAEAKIVKDFDK 209
E+ ELW EYE S+AEAK VK D+
Sbjct: 120 ELYELWEEYETQSSAEAKFVKQLDQ 144
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1
Length = 205
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 103/151 (68%), Gaps = 8/151 (5%)
Query: 59 SINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGL 118
S +P+A+ S GA +++ FL L +LK R GWV RNV PES++DHMYRM +
Sbjct: 3 SASPVATMSGRGA------RNLLQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAV 56
Query: 119 MGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG 178
M L+ D +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+ + +LL
Sbjct: 57 MALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLP 115
Query: 179 QGARAKEIDELWMEYEENSTAEAKIVKDFDK 209
+ + KE+ ELW EYE S+AEAK VK D+
Sbjct: 116 EDLQ-KELYELWEEYETQSSAEAKFVKQLDQ 145
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1
Length = 199
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Query: 72 AFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDR 131
A S S + ++ FL L +LK R GWV RNV PES++DHMYRM +M ++ D +++
Sbjct: 4 ASSGSGAGLLRFLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNK 62
Query: 132 DKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWM 191
D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+ + +LL + R KE+ ELW
Sbjct: 63 DRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWE 121
Query: 192 EYEENSTAEAKIVKDFDK 209
EYE S+ EAK VK D+
Sbjct: 122 EYETQSSEEAKFVKQLDQ 139
>sp|B7JUK2|TRPA_CYAP8 Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801)
GN=trpA PE=3 SV=1
Length = 267
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 20 LIPSFTCNNLRFNKTIANSRAHRMATEASSSSSSFTGGDSINPLASSSVNGAAFSSSSSS 79
LIP T + T ++A R+ +AS + G +PLA V AA + +
Sbjct: 19 LIPFITAGDPDLETT---AKALRL-LDASGADLIELGVPYSDPLADGPVIQAAATRALGR 74
Query: 80 VI---DFLSLCHRLKTTKRAGWVKRNVNNP------ESIADHMYRMGLMGLIMADIPGID 130
+ D L + + +A + NP E+ + G+ GL++ D+P +
Sbjct: 75 GVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQGLVVPDLPLEE 134
Query: 131 RDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG 178
+ +K A H++ A+ + P+ I + E R+ + Y+ + G
Sbjct: 135 AESLLKPA--HEVGIAVTLLVAPTSPIERIEAIARQSQGFIYLVSVTG 180
>sp|B2VIV0|Y1201_ERWT9 UPF0207 protein ETA_12010 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=ETA_12010 PE=3 SV=1
Length = 198
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 83 FLSLCHRLKTTKRAGW-VKRNVNNPESIADHMYRMGLMGLIMADIPG------IDRDKCI 135
F + RLK R W + RNV E++++H ++ ++ +A I ++ ++
Sbjct: 6 FFAHLSRLKLINR--WPLMRNVRT-ENVSEHSLQVAMVAHALALIKNARFAGNLNPERIA 62
Query: 136 KMAIVHDIAEAIVGDI-TP---SDGIPKEEKSQREREAITYMCKLLGQGAR---AKEIDE 188
MA+ HD +E + GD+ TP + E + E+ A + ++L + R A IDE
Sbjct: 63 LMAVYHDASEVLTGDLPTPVKYYNAQIAHEYKKIEKIAQHKLIEMLPEELRSAYAPLIDE 122
Query: 189 LWMEYEENSTAEAKIVKDFDKV 210
++S AE IVK D +
Sbjct: 123 -----HQHSEAETAIVKQADAL 139
>sp|Q5FL81|RNY_LACAC Ribonuclease Y OS=Lactobacillus acidophilus (strain ATCC 700396 /
NCK56 / N2 / NCFM) GN=rny PE=3 SV=1
Length = 543
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + + +++ H +G +
Sbjct: 314 ARKEVNDDIYEAGESALMELG--IHRMNPELVKTLGRLKYHTSYGQNVLSHSIEVGKLAG 371
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 372 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 404
>sp|A8YUB8|RNY_LACH4 Ribonuclease Y OS=Lactobacillus helveticus (strain DPC 4571) GN=rny
PE=3 SV=1
Length = 543
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + +++ H +G +
Sbjct: 314 ARKEVNDDIYEAGESALMELG--IHRMNPELVKTLGRLKYRTSYGQNVLSHSIEVGKLAG 371
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 372 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 404
>sp|Q04BJ7|RNY_LACDB Ribonuclease Y OS=Lactobacillus delbrueckii subsp. bulgaricus
(strain ATCC BAA-365) GN=rny PE=3 SV=1
Length = 547
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + +++ H +G +
Sbjct: 318 ARKEVNDDIYEAGESALMELG--IHRMNPELVKILGRLKYRTSYGQNVLAHSIEVGKLAG 375
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 376 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 408
>sp|Q1GB50|RNY_LACDA Ribonuclease Y OS=Lactobacillus delbrueckii subsp. bulgaricus
(strain ATCC 11842 / DSM 20081) GN=rny PE=3 SV=1
Length = 547
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 64 ASSSVNGAAFSSSSSSVIDFLSLCHRL--KTTKRAGWVKRNVNNPESIADHMYRMGLMGL 121
A VN + + S++++ HR+ + K G +K + +++ H +G +
Sbjct: 318 ARKEVNDDIYEAGESALMELG--IHRMNPELVKILGRLKYRTSYGQNVLAHSIEVGKLAG 375
Query: 122 IMADIPGIDRDKCIKMAIVHDIAEAIVGDITPS 154
MA G+D ++ ++HDI +AI DI S
Sbjct: 376 TMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGS 408
>sp|Q1BA08|LEXA_MYCSS LexA repressor OS=Mycobacterium sp. (strain MCS) GN=lexA PE=3 SV=1
Length = 230
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 85 SLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGID 130
S+ H+L+T +R G+++R+ N P ++ + ++ D+ G D
Sbjct: 58 SVAHQLRTLERKGYLRRDPNRPRAVDVRLSDEPATPVVTTDVAGSD 103
>sp|A1UF04|LEXA_MYCSK LexA repressor OS=Mycobacterium sp. (strain KMS) GN=lexA PE=3 SV=1
Length = 230
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 85 SLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGID 130
S+ H+L+T +R G+++R+ N P ++ + ++ D+ G D
Sbjct: 58 SVAHQLRTLERKGYLRRDPNRPRAVDVRLSDEPATPVVTTDVAGSD 103
>sp|A3PYG6|LEXA_MYCSJ LexA repressor OS=Mycobacterium sp. (strain JLS) GN=lexA PE=3 SV=1
Length = 230
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 85 SLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGID 130
S+ H+L+T +R G+++R+ N P ++ + ++ D+ G D
Sbjct: 58 SVAHQLRTLERKGYLRRDPNRPRAVDVRLSDEPATPVVTTDVAGSD 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,484,146
Number of Sequences: 539616
Number of extensions: 2724066
Number of successful extensions: 14088
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 12588
Number of HSP's gapped (non-prelim): 1050
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)