Query 028340
Match_columns 210
No_of_seqs 132 out of 858
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3197 Predicted hydrolases o 100.0 9E-43 1.9E-47 294.5 14.9 133 77-210 24-156 (210)
2 PF13023 HD_3: HD domain; PDB: 100.0 7E-41 1.5E-45 276.7 5.3 123 87-210 1-125 (165)
3 PRK03826 5'-nucleotidase; Prov 100.0 5E-36 1.1E-40 255.1 11.7 127 80-210 2-138 (195)
4 COG1896 Predicted hydrolases o 100.0 6.3E-33 1.4E-37 235.7 10.9 130 79-210 4-138 (193)
5 PF12917 HD_2: HD containing h 99.9 1.2E-23 2.6E-28 181.5 10.6 128 79-210 2-139 (215)
6 smart00471 HDc Metal dependent 97.8 6.1E-05 1.3E-09 54.6 5.8 47 106-152 2-49 (124)
7 cd00077 HDc Metal dependent ph 97.8 3.1E-05 6.7E-10 57.0 4.2 46 107-152 1-49 (145)
8 PRK10119 putative hydrolase; P 97.7 0.00024 5.1E-09 62.6 8.7 95 110-210 27-129 (231)
9 PRK12705 hypothetical protein; 97.5 0.00039 8.5E-09 67.5 9.0 92 107-210 322-414 (508)
10 PF01966 HD: HD domain; Inter 97.5 2E-05 4.4E-10 58.1 -0.4 42 109-150 1-44 (122)
11 TIGR03401 cyanamide_fam HD dom 97.4 0.0012 2.7E-08 57.8 10.0 99 107-210 54-163 (228)
12 TIGR00295 conserved hypothetic 97.3 0.0012 2.6E-08 54.6 8.3 42 106-147 11-57 (164)
13 PRK12703 tRNA 2'-O-methylase; 97.0 0.0034 7.4E-08 58.3 8.3 41 106-146 185-225 (339)
14 PRK12704 phosphodiesterase; Pr 96.6 0.006 1.3E-07 59.3 7.2 93 106-210 333-426 (520)
15 TIGR03319 YmdA_YtgF conserved 96.6 0.0099 2.2E-07 57.8 8.7 93 106-210 327-420 (514)
16 COG1418 Predicted HD superfami 96.5 0.0028 6.1E-08 55.3 4.2 43 106-148 34-76 (222)
17 PRK00106 hypothetical protein; 96.3 0.011 2.4E-07 58.0 7.3 92 107-210 349-441 (535)
18 TIGR00277 HDIG uncharacterized 96.1 0.0071 1.5E-07 41.9 3.6 42 107-148 3-44 (80)
19 TIGR00488 putative HD superfam 95.8 0.01 2.2E-07 48.3 3.9 40 107-146 7-46 (158)
20 PRK07152 nadD putative nicotin 95.4 0.071 1.5E-06 48.7 8.2 41 107-147 195-235 (342)
21 PRK13480 3'-5' exoribonuclease 94.6 0.15 3.3E-06 46.8 7.8 41 107-147 158-199 (314)
22 COG1713 Predicted HD superfami 92.8 0.13 2.8E-06 44.4 3.8 36 109-144 18-53 (187)
23 COG2206 c-di-GMP phosphodieste 92.5 0.38 8.3E-06 44.1 6.7 45 106-150 146-193 (344)
24 PF08668 HDOD: HDOD domain; I 87.3 1.7 3.7E-05 35.7 5.8 45 106-150 92-137 (196)
25 COG4341 Predicted HD phosphohy 85.9 5 0.00011 34.5 7.9 70 95-173 18-89 (186)
26 TIGR03760 ICE_TraI_Pfluor inte 84.5 1.7 3.6E-05 38.0 4.6 41 107-147 66-121 (218)
27 PRK01286 deoxyguanosinetriphos 77.1 2.3 4.9E-05 39.7 3.1 59 85-144 40-98 (336)
28 COG1639 Predicted signal trans 72.9 5.2 0.00011 36.7 4.2 49 106-154 114-164 (289)
29 PF13328 HD_4: HD domain; PDB: 72.5 21 0.00045 28.6 7.3 34 107-145 18-51 (153)
30 PRK03007 deoxyguanosinetriphos 71.9 3.7 8E-05 39.5 3.2 39 106-144 68-106 (428)
31 TIGR01596 cas3_HD CRISPR-assoc 67.4 3.8 8.3E-05 32.7 1.9 37 110-146 2-46 (177)
32 TIGR03276 Phn-HD phosphonate d 62.3 22 0.00048 30.4 5.7 37 106-147 23-59 (179)
33 TIGR01353 dGTP_triPase deoxygu 59.5 7.3 0.00016 36.7 2.5 39 106-144 36-85 (381)
34 COG0232 Dgt dGTP triphosphohyd 55.9 9.8 0.00021 36.6 2.7 55 89-144 47-109 (412)
35 COG1078 HD superfamily phospho 54.7 9.1 0.0002 36.7 2.3 57 86-144 28-96 (421)
36 COG3481 Predicted HD-superfami 51.0 21 0.00045 32.9 3.9 42 106-147 138-181 (287)
37 KOG2681 Metal-dependent phosph 41.3 69 0.0015 31.6 5.9 59 87-145 51-121 (498)
38 TIGR02621 cas3_GSU0051 CRISPR- 41.0 36 0.00077 35.7 4.3 49 106-154 673-729 (844)
39 COG1043 LpxA Acyl-[acyl carrie 33.6 86 0.0019 28.6 5.0 56 146-203 174-246 (260)
40 PRK01096 deoxyguanosinetriphos 32.6 25 0.00055 33.9 1.6 39 106-144 59-112 (440)
41 PRK05318 deoxyguanosinetriphos 32.3 37 0.00081 32.6 2.7 39 106-144 56-105 (432)
42 PF10463 Peptidase_U49: Peptid 31.8 2E+02 0.0043 25.2 6.8 66 74-153 44-119 (206)
43 TIGR01693 UTase_glnD [Protein- 30.7 89 0.0019 32.2 5.2 42 106-147 426-481 (850)
44 COG2844 GlnD UTP:GlnB (protein 30.4 77 0.0017 33.4 4.6 77 76-152 409-504 (867)
45 PF07514 TraI_2: Putative heli 26.7 71 0.0015 29.5 3.4 41 107-147 65-120 (327)
46 COG1480 Predicted membrane-ass 25.3 54 0.0012 33.7 2.5 48 111-158 492-548 (700)
47 PRK05092 PII uridylyl-transfer 22.1 1.5E+02 0.0033 31.1 5.1 45 106-150 491-549 (931)
No 1
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=100.00 E-value=9e-43 Score=294.46 Aligned_cols=133 Identities=64% Similarity=1.085 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCC
Q 028340 77 SSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDG 156 (210)
Q Consensus 77 ~~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~ 156 (210)
.+++++|+.++++||.++||||+.+||++|||||+|||||+++||++.+ .|+|++||++|||+||++|+++|||+|.++
T Consensus 24 ~~sil~FL~l~~~LK~~~RTGWv~~gv~~pESIadHMYRM~llaml~~d-~~vnr~rC~kiAlVHD~AEslVgditP~~~ 102 (210)
T KOG3197|consen 24 SKSILQFLDLLGRLKTTPRTGWVKRGVNEPESIADHMYRMALLAMLIKD-PGVNRERCMKIALVHDIAESLVGDITPSDG 102 (210)
T ss_pred chHHHHHHHHHHHhccCCCccccccCCCCcchHHHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3479999999999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred CChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 157 IPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 157 v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
+++++|+++|-+|++.|+..|+++..++|+.+||.|||+++|+||||||++||+
T Consensus 103 vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~eYE~~ss~Eak~VKdlDK~ 156 (210)
T KOG3197|consen 103 VSKEEKHRREFEAMKYICQLLIGELRAKEITELWLEYEEASSLEAKFVKDLDKF 156 (210)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCchhHHHHHhhHHH
Confidence 999999999999999999999667899999999999999999999999999984
No 2
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=100.00 E-value=7e-41 Score=276.67 Aligned_cols=123 Identities=48% Similarity=0.812 Sum_probs=109.1
Q ss_pred HhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHH
Q 028340 87 CHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPG--IDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQ 164 (210)
Q Consensus 87 l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~--vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~ 164 (210)
+++||+++|+||..+|++++||||||||+||++|++++...+ +|++|+++|||+||++|++||||++++++.+..|+.
T Consensus 1 ~~~Lk~i~R~gw~~~g~~~~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~ 80 (165)
T PF13023_consen 1 VDRLKFIKRTGWVLRGRPRPESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEE 80 (165)
T ss_dssp HHHCCCSB-HHHHHCTSSSG-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHH
T ss_pred CcccCcccCCCcccCCCCCCccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHH
Confidence 589999999999999987799999999999999999998875 999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 165 REREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 165 ~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
+|++|++++++.| |.+++.+|..||.|||+++|+||++||++|||
T Consensus 81 ~E~~a~~~l~~~L-p~~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l 125 (165)
T PF13023_consen 81 REEAAIEELFSLL-PEELQEELKELWEEFEEGESPEAKLVKAADKL 125 (165)
T ss_dssp HHHHHHHHHCTTS-SCHHHHHHHHHHHHHHHT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHhhcCCCHHHHHHHHhhhh
Confidence 9999999999999 88899999999999999999999999999985
No 3
>PRK03826 5'-nucleotidase; Provisional
Probab=100.00 E-value=5e-36 Score=255.14 Aligned_cols=127 Identities=22% Similarity=0.302 Sum_probs=113.7
Q ss_pred HHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC----C--CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 028340 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI----P--GIDRDKCIKMAIVHDIAEAIVGDITP 153 (210)
Q Consensus 80 ~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~----~--~vD~~Kvv~mAL~HDLaEa~tGDI~~ 153 (210)
..+|+.++++||+|+||||+. +++ +||||||||+||+||++++.+ + ++|++|+++|||+||++|++||||++
T Consensus 2 ~~~F~~~~~rLK~i~Rw~~~~-~~~-~EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~~tGDi~t 79 (195)
T PRK03826 2 QSHFFAHLSRLKLINRWPLMR-NVR-TENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEVLTGDLPT 79 (195)
T ss_pred hHHHHHHHHhhccccccCCCC-CCC-CCccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHHhcCCccc
Confidence 478999999999999999985 565 799999999999999999854 3 69999999999999999999999998
Q ss_pred CCC----CChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 154 SDG----IPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 154 ~~~----v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|++ .....+++.|++|.++|++.| |++++++|..+|.||+ .+++|+++||++|||
T Consensus 80 PvK~~~~~~~~~~~~~E~~a~~~l~~~L-P~~l~~~~~~~~~e~e-~~~~Ea~lvK~aDkL 138 (195)
T PRK03826 80 PVKYFNPEIAHEYKKIEKIAEQKLLDML-PEELQEDFRPLLDSHA-ASEEEKAIVKQADAL 138 (195)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccc-CCcHHHHHHHHHHHH
Confidence 864 223457789999999999999 8999999999999985 699999999999986
No 4
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=100.00 E-value=6.3e-33 Score=235.69 Aligned_cols=130 Identities=39% Similarity=0.634 Sum_probs=114.6
Q ss_pred HHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC-----CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 028340 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP-----GIDRDKCIKMAIVHDIAEAIVGDITP 153 (210)
Q Consensus 79 ~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~-----~vD~~Kvv~mAL~HDLaEa~tGDI~~ 153 (210)
.+++|+..+.+||.++|+||+.+|++++||||+|||+||++|+++++.. .+|++|++.|||+||++|++||||++
T Consensus 4 ~~~~~~~~~~~Lk~i~R~gw~~~g~~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~t 83 (193)
T COG1896 4 DLLKFFALLSRLKDIPRTGWLLRGIWNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPT 83 (193)
T ss_pred hHHHHHHHHHHHHhhhccchhhcCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCC
Confidence 4788889999999999999999999999999999999999999998875 38999999999999999999999999
Q ss_pred CCCCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 154 SDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 154 ~~~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|.+.....+.+.++++++.++..+-+ + .++++++|.||++.+++|+++||++|||
T Consensus 84 p~k~~~~~~~~~~~e~e~~~~~~~~~-~-p~e~~~~~~~~~~~~s~ea~~vk~aDkl 138 (193)
T COG1896 84 PVKYARAGLYKEEEEAEEAAIHLLFG-L-PEELLELFREYEKRSSLEARIVKDADKL 138 (193)
T ss_pred chhhhcchHHHHHHHHHHHHHHcccC-C-cHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 98765556666666667777666622 2 6899999999999999999999999986
No 5
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=99.90 E-value=1.2e-23 Score=181.53 Aligned_cols=128 Identities=23% Similarity=0.307 Sum_probs=94.6
Q ss_pred HHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC-----CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 028340 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP-----GIDRDKCIKMAIVHDIAEAIVGDITP 153 (210)
Q Consensus 79 ~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~-----~vD~~Kvv~mAL~HDLaEa~tGDI~~ 153 (210)
++.+||.-+.+|++|.||+-+++. . .+|||+|||+||.+|++|+.+. .+|+.+++.+||.||++|++||||++
T Consensus 2 g~~~f~~~l~~le~I~R~pg~fk~-~-~~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~T 79 (215)
T PF12917_consen 2 GMHQFFQSLSRLETIIRWPGMFKF-Q-EHNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKT 79 (215)
T ss_dssp SHHHHHHHHHHTTSSBSSTSS--S-S---BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S
T ss_pred cHHHHHHHHHhhHHHHHccCccCc-c-hhhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCC
Confidence 367899999999999999888764 3 4999999999999999999863 68999999999999999999999999
Q ss_pred CCCCC----hhHhHHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 154 SDGIP----KEEKSQREREAITYMC-KLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 154 ~~~v~----~~~K~~~E~~A~~~L~-~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|+|.. ++--.+.|+.+.++++ ..+ |+++++.|+....|- +.+|.|+++|++||||
T Consensus 80 PVKy~tPelr~~~~~VE~~m~~~~i~~~i-P~e~q~~Y~~~l~E~-KDdt~EG~Iv~~ADki 139 (215)
T PF12917_consen 80 PVKYATPELREMLAQVEEEMTENFIKKEI-PEEFQEAYRRRLKEG-KDDTLEGQIVKAADKI 139 (215)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHS----SSSHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHhhcC-CcccHHHHHHHHHHHH
Confidence 98643 2223357888888866 478 887777777777664 4579999999999985
No 6
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.78 E-value=6.1e-05 Score=54.57 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=40.9
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhcCCC
Q 028340 106 PESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVGDIT 152 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~v-D~~Kvv~mAL~HDLaEa~tGDI~ 152 (210)
.+++.+|+++|+.++..+++..+. |.+.+...||+||+++...++..
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~ 49 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSF 49 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHH
Confidence 488999999999999998887655 78889999999999998877654
No 7
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=97.78 E-value=3.1e-05 Score=56.96 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=39.5
Q ss_pred CcHHhHHHHHHHHHHHhccCC---CCCHHHHHHHHHhhhhhhhhhcCCC
Q 028340 107 ESIADHMYRMGLMGLIMADIP---GIDRDKCIKMAIVHDIAEAIVGDIT 152 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~---~vD~~Kvv~mAL~HDLaEa~tGDI~ 152 (210)
+++.+||++|+.++..++... +.|.+.+...||+||+++...++..
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~~~~~~ 49 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTPDAI 49 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCccCcccc
Confidence 478899999999999887764 5778899999999999999877654
No 8
>PRK10119 putative hydrolase; Provisional
Probab=97.66 E-value=0.00024 Score=62.56 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=61.4
Q ss_pred HhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHh--cC-CchHHHHH
Q 028340 110 ADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKL--LG-QGARAKEI 186 (210)
Q Consensus 110 AEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~--L~-p~~l~~e~ 186 (210)
-.|..||--+|..++...+.|.+-+...|++||+ ||.+....-..... ..-.+.+..++.. .| |++..+.+
T Consensus 27 ~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv-----~d~~k~~~~~~~~~-~~~a~~a~~~L~~~~~g~~~~~i~~V 100 (231)
T PRK10119 27 ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDI-----VSLAKNHPQRHRSS-ILAAEETRRILREDFPDFPAEKIEAV 100 (231)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc-----chhhhcCccccchh-hHHHHHHHHHHHHcccCcCHHHHHHH
Confidence 5799999999998887778999999999999999 35322211000001 1112223333333 22 66666667
Q ss_pred HHHHHHHh-----hCCCHHHHHHhhhccC
Q 028340 187 DELWMEYE-----ENSTAEAKIVKDFDKV 210 (210)
Q Consensus 187 ~~Lw~EyE-----~~~T~EAklVK~aDKL 210 (210)
..+...-. ...|+|+++|.|||||
T Consensus 101 ~~iI~~~sfs~~~~p~tlE~kIVQDADRL 129 (231)
T PRK10119 101 CHAIEAHSFSAQIAPLTLEAKIVQDADRL 129 (231)
T ss_pred HHHHHHcCCCCCCCCCCHHHhhhhhHHHH
Confidence 66665432 3468999999999997
No 9
>PRK12705 hypothetical protein; Provisional
Probab=97.54 E-value=0.00039 Score=67.49 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=62.1
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHHH
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~e 185 (210)
.|+-+||..||.+|..+|...|+|++.+...+|+||++.++..++. ..+... -.+++...+ |+....
T Consensus 322 qnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie~e~~----~~H~~i-------GaeLlkk~~~p~~Vv~- 389 (508)
T PRK12705 322 QNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSIDRESD----GNHVEI-------GAELARKFNEPDEVIN- 389 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcchhhhc----ccHHHH-------HHHHHHhcCCCHHHHH-
Confidence 6799999999999999998889999999999999999998644431 111111 111233232 322211
Q ss_pred HHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 186 IDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 186 ~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
......+...+.++++++|..||.|
T Consensus 390 aI~~HHe~~~~~~~~a~IVaiADaL 414 (508)
T PRK12705 390 AIASHHNKVNPETVYSVLVQIADAL 414 (508)
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 1122234446789999999999975
No 10
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=97.48 E-value=2e-05 Score=58.13 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhhhhhhhcC
Q 028340 109 IADHMYRMGLMGLIMADIPG--IDRDKCIKMAIVHDIAEAIVGD 150 (210)
Q Consensus 109 VAEHSf~vAliA~~la~~~~--vD~~Kvv~mAL~HDLaEa~tGD 150 (210)
+.+||.+|+-+|..++...+ .|.+.+...||+||++-...+|
T Consensus 1 ~~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~~~ 44 (122)
T PF01966_consen 1 RFEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPTPD 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHSTHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCCch
Confidence 46899999999998888766 8899999999999999887765
No 11
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.44 E-value=0.0012 Score=57.81 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=58.9
Q ss_pred CcHHhHHHHHHHHHHHhccCC----CCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhc-C-Cc
Q 028340 107 ESIADHMYRMGLMGLIMADIP----GIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL-G-QG 180 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~----~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L-~-p~ 180 (210)
+-.-.||+||..+|..++... +.|.+-+..-||+||++ |...+.+..+...+..-..+..+++... | |+
T Consensus 54 ~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG-----~~~~~~~~~~~~fe~~ga~~A~~~L~~~~G~~~ 128 (228)
T TIGR03401 54 PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG-----TTDENMTATKMSFEFYGGILALDVLKEQTGANQ 128 (228)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc-----cccccCCcccCCHHHHHHHHHHHHHHHCCCCCH
Confidence 466789999999999888632 79999999999999985 4333221111111111222333333333 3 44
Q ss_pred hHHHHHHHHHH--HH---hhCCCHHHHHHhhhccC
Q 028340 181 ARAKEIDELWM--EY---EENSTAEAKIVKDFDKV 210 (210)
Q Consensus 181 ~l~~e~~~Lw~--Ey---E~~~T~EAklVK~aDKL 210 (210)
+..+.+..... +| ....++|+++|.++|++
T Consensus 129 ~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~l 163 (228)
T TIGR03401 129 DQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIF 163 (228)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Confidence 34444433322 22 13347899999999874
No 12
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.33 E-value=0.0012 Score=54.57 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=37.1
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC-----CCHHHHHHHHHhhhhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPG-----IDRDKCIKMAIVHDIAEAI 147 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~-----vD~~Kvv~mAL~HDLaEa~ 147 (210)
++++-+||.+|+.+|..++...+ .|.+.+...||+||++-..
T Consensus 11 ~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~ 57 (164)
T TIGR00295 11 DESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRAR 57 (164)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCccc
Confidence 58999999999999999988653 8999999999999996553
No 13
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.97 E-value=0.0034 Score=58.29 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=37.0
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa 146 (210)
+|.+.+|+.+|+-+|..++..+++|.+.+...||+||++-.
T Consensus 185 ~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~ 225 (339)
T PRK12703 185 SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRT 225 (339)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccc
Confidence 57899999999999999998889999999999999999543
No 14
>PRK12704 phosphodiesterase; Provisional
Probab=96.59 E-value=0.006 Score=59.34 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=59.1
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHH
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~ 184 (210)
..|+-.||.+||.+|..+|...|+|.+.+...+|+||++-+...++. ..+...- ..++...+ |.....
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~~~e~~----~~H~~iG-------a~il~~~~~~~~v~~ 401 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKALDHEVE----GSHVEIG-------AELAKKYKESPVVIN 401 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCcccccc----CCHHHHH-------HHHHHHcCCCHHHHH
Confidence 36789999999999999999889999999999999999887533221 1111110 01122221 221111
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 185 EIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
......+-....+.++++|.++|.|
T Consensus 402 -aI~~HHe~~~~~~~~a~IV~~ADaL 426 (520)
T PRK12704 402 -AIAAHHGDEEPTSIEAVLVAAADAI 426 (520)
T ss_pred -HHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 1111122124678999999999975
No 15
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.59 E-value=0.0099 Score=57.77 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHH
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~ 184 (210)
..++-.||.+||.+|..+|..+|+|++.+...+|+||++-++.-++. ..+... . ..++...+ |+....
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~~e~~----~~H~~~------G-a~ll~~~~~~~~V~~ 395 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDHEVE----GSHVEI------G-AELAKKYKESPEVVN 395 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccchhhc----ccHHHH------H-HHHHHHcCCCHHHHH
Confidence 36688999999999999999889999999999999999876422211 111110 0 11222221 222222
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 185 EIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
-+..=. +-....++++.+|..+|.|
T Consensus 396 aI~~HH-~~~~~~~~~a~IV~~AD~l 420 (514)
T TIGR03319 396 AIAAHH-GDVEPTSIEAVLVAAADAL 420 (514)
T ss_pred HHHHhC-CCCCCCCHHHHHHHHHHHh
Confidence 221111 1124578999999999975
No 16
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=96.54 E-value=0.0028 Score=55.26 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=38.9
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIV 148 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~t 148 (210)
.+|+-+||-+|+.+|+.++...|+|++-+.+-||+||++=...
T Consensus 34 ~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 34 GQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAID 76 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc
Confidence 5899999999999999999988999999999999999965443
No 17
>PRK00106 hypothetical protein; Provisional
Probab=96.35 E-value=0.011 Score=57.97 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=59.7
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHHH
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAKE 185 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~e 185 (210)
+++-+||..||.+|..+|..+|+|++.+...+|+||++-++...+.. ++..- = ..++...+ |+....-
T Consensus 349 qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~~e~~g----~Ha~i---G----a~ll~~~~~~~~v~~a 417 (535)
T PRK00106 349 QNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDREVEG----SHVEI---G----MEFARKYKEHPVVVNT 417 (535)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccCccccC----ChHHH---H----HHHHHHcCCCHHHHHH
Confidence 68999999999999999988899999999999999999986433211 12111 0 11221211 3222222
Q ss_pred HHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 186 IDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 186 ~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
+..=..++ ...++++.+|..+|.|
T Consensus 418 I~~HH~~~-~~~s~~a~IV~~AD~l 441 (535)
T PRK00106 418 IASHHGDV-EPESVIAVIVAAADAL 441 (535)
T ss_pred HHHhCCCC-CCCChHHHHHHHHHHh
Confidence 21111122 4568999999999964
No 18
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.13 E-value=0.0071 Score=41.94 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=37.1
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIV 148 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~t 148 (210)
+.+-+|+.+++.+|..++...++|.+.+...||+||++....
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~~~~ 44 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPIT 44 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCCccc
Confidence 467899999999999999877899999999999999977653
No 19
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.85 E-value=0.01 Score=48.35 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=36.9
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa 146 (210)
|.--+||.+||.+|..+|...++|.+++...+|+||++..
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKF 46 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhcc
Confidence 6778999999999999998878999999999999999973
No 20
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=95.45 E-value=0.071 Score=48.72 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=37.7
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI 147 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~ 147 (210)
+..-.||.+||.+|..+|...|+|.+++...+|+||++-..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~~ 235 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKEW 235 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhccC
Confidence 67889999999999999988899999999999999999863
No 21
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=94.58 E-value=0.15 Score=46.79 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=36.6
Q ss_pred CcHHhHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIP-GIDRDKCIKMAIVHDIAEAI 147 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~-~vD~~Kvv~mAL~HDLaEa~ 147 (210)
-=.+||+..|+-+|..+++.+ .+|++-++..||+||++=+.
T Consensus 158 GGLleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~ 199 (314)
T PRK13480 158 SGLAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLGKVI 199 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhhhHH
Confidence 457999999999999998877 79999999999999998654
No 22
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=92.84 E-value=0.13 Score=44.43 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 028340 109 IADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (210)
Q Consensus 109 VAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLa 144 (210)
=-+|+-+|+=+|.-|+..+++|.+|+..-+|+||++
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~a 53 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIA 53 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999985
No 23
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=92.49 E-value=0.38 Score=44.11 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=37.0
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHH---HHHHHHHhhhhhhhhhcC
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRD---KCIKMAIVHDIAEAIVGD 150 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~---Kvv~mAL~HDLaEa~tGD 150 (210)
-+....||.+||.+|..++...|++.+ ++..-|++||++-+.+=|
T Consensus 146 d~~t~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~ip~ 193 (344)
T COG2206 146 DDYTYGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGIPD 193 (344)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccCCH
Confidence 388999999999999999998887665 456678999998776543
No 24
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=87.34 E-value=1.7 Score=35.67 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhcC
Q 028340 106 PESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVGD 150 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~v-D~~Kvv~mAL~HDLaEa~tGD 150 (210)
.+..-.||..+|.+|..++...+. ++++++..+|+||+++.+.=-
T Consensus 92 ~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gLL~~iG~l~l~~ 137 (196)
T PF08668_consen 92 LERFWRHSLAAAAIARRLARELGFDDPDEAYLAGLLHDIGKLLLLS 137 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 478899999999999999887754 469999999999999998654
No 25
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=85.89 E-value=5 Score=34.53 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=44.4
Q ss_pred ccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh--hcCCCCCCCCChhHhHHHHHHHHHH
Q 028340 95 RAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI--VGDITPSDGIPKEEKSQREREAITY 172 (210)
Q Consensus 95 R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~--tGDI~~~~~v~~~~K~~~E~~A~~~ 172 (210)
|.|=...+- .+=|-.||+.+.|.+|+--+ . .+.+|.-||.|||+-.+ -||.+...++.+. .-|+.+..-
T Consensus 18 ~~g~e~y~g-e~VTq~eHaLQ~AtlAerdG----a-~~~lVaaALLHDiGhl~~~~g~~ps~~~i~d~---~hee~~~~v 88 (186)
T COG4341 18 RHGDEGYSG-EPVTQLEHALQCATLAERDG----A-DTALVAAALLHDIGHLYADYGHTPSAAGIDDP---FHEEFATPV 88 (186)
T ss_pred Hcccccccc-CcchhhhhHHHHhHHHHhcC----C-cHHHHHHHHHHhHHHHhhhcCCCccccccchh---HHHHHhHHH
Confidence 555443331 25678999999998876432 2 25688999999999876 5666666555322 234444443
Q ss_pred H
Q 028340 173 M 173 (210)
Q Consensus 173 L 173 (210)
+
T Consensus 89 L 89 (186)
T COG4341 89 L 89 (186)
T ss_pred H
Confidence 3
No 26
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=84.50 E-value=1.7 Score=38.05 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=33.1
Q ss_pred CcHHhHHHHHHHHHHHhccCC----CCCHH-----------HHHHHHHhhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIP----GIDRD-----------KCIKMAIVHDIAEAI 147 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~----~vD~~-----------Kvv~mAL~HDLaEa~ 147 (210)
--..+|+..|+.+|+-++..+ |.+++ =++..||+||++.++
T Consensus 66 GGLl~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 66 GGLLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Confidence 348999999999999888754 45544 368899999999984
No 27
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=77.12 E-value=2.3 Score=39.68 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=40.3
Q ss_pred HHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 028340 85 SLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (210)
Q Consensus 85 ~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLa 144 (210)
....||+.+.--.-. .+-...-|=-+||..|+-+|-.++...++|.+-+-..||.||++
T Consensus 40 ~~frRL~~ktQv~~~-~~~dh~rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 40 KAFRRLKHKTQVFIN-PEGDHYRTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred HHHHhhhccceeccc-CCCcccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 344555554443222 22111236789999999999988877788887777899999985
No 28
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=72.85 E-value=5.2 Score=36.75 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=42.7
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC-CCHHHHHHHHHhhhhhhhh-hcCCCCC
Q 028340 106 PESIADHMYRMGLMGLIMADIPG-IDRDKCIKMAIVHDIAEAI-VGDITPS 154 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~-vD~~Kvv~mAL~HDLaEa~-tGDI~~~ 154 (210)
...+-+++++.|++|+.+++..| .+.++++...|+|++++.. .-|++..
T Consensus 114 ~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y~~gLLh~lG~l~ll~~~~~~ 164 (289)
T COG1639 114 RQLFWDTAIETAMIAEGLARALGRADSDEAYTAGLLHNLGILVLLTDFPDH 164 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHccHHHHHHHhHHH
Confidence 47889999999999999999886 9999999999999999986 5555554
No 29
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=72.52 E-value=21 Score=28.61 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=22.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAE 145 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaE 145 (210)
+.--.|-..||.+ ++.. |.| +.++.-||+||+.|
T Consensus 18 ~py~~H~~~va~~---l~~~-~~d-~~~i~aalLHD~ie 51 (153)
T PF13328_consen 18 EPYISHPLEVAEI---LAEL-GLD-EETIAAALLHDVIE 51 (153)
T ss_dssp -BTTHHHHHHHHH---HHTS-----HHHHHHHHHTTHHH
T ss_pred CcHHHHHHHHHHH---HHHc-CCC-HHHHhhheeecHHH
Confidence 5556788887775 4444 566 44889999999999
No 30
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=71.88 E-value=3.7 Score=39.47 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLa 144 (210)
.-|--.||..||-+|-.++...+.|.+=+-..||.|||+
T Consensus 68 ~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 68 PRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 467899999999999998887788888888999999984
No 31
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=67.36 E-value=3.8 Score=32.69 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHh-------ccCCCC-CHHHHHHHHHhhhhhhh
Q 028340 110 ADHMYRMGLMGLIM-------ADIPGI-DRDKCIKMAIVHDIAEA 146 (210)
Q Consensus 110 AEHSf~vAliA~~l-------a~~~~v-D~~Kvv~mAL~HDLaEa 146 (210)
.+|+..|+-++..+ +...+. .++-+...|++||++=+
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~ 46 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKI 46 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccC
Confidence 58999999998853 333343 35666778999999764
No 32
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=62.31 E-value=22 Score=30.43 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=27.7
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI 147 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~ 147 (210)
+=|-.+|+.++|.+|.- .|.| +.++..||+||++-.+
T Consensus 23 ~Vs~leH~LQ~A~lA~~----~Gad-~elvvAALLHDIGhll 59 (179)
T TIGR03276 23 AVSQLEHALQCAQLAEA----AGAD-DELIVAAFLHDIGHLL 59 (179)
T ss_pred CCcHHHHHHHHHHHHHH----cCCC-HHHHHHHHHHhcchhh
Confidence 45678999999987653 2556 4568999999997543
No 33
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=59.45 E-value=7.3 Score=36.71 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCC-----------CHHHHHHHHHhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPGI-----------DRDKCIKMAIVHDIA 144 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~v-----------D~~Kvv~mAL~HDLa 144 (210)
.-|=-.||..||-+|--++...+. |.+=+-..||.|||+
T Consensus 36 ~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiG 85 (381)
T TIGR01353 36 VRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIG 85 (381)
T ss_pred CcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCC
Confidence 356689999999999877654322 566677899999985
No 34
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=55.85 E-value=9.8 Score=36.60 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=38.3
Q ss_pred HhhcccccCccCCCCC---CCCcHHhHHHHHHHHHHHhccCCCCC-----HHHHHHHHHhhhhh
Q 028340 89 RLKTTKRAGWVKRNVN---NPESIADHMYRMGLMGLIMADIPGID-----RDKCIKMAIVHDIA 144 (210)
Q Consensus 89 rLK~i~R~Gw~~~gv~---~~ESVAEHSf~vAliA~~la~~~~vD-----~~Kvv~mAL~HDLa 144 (210)
.+++++....++ +.. ..-|=--||..||-||-.++...+.| .+=|=..||.||++
T Consensus 47 AfRRLq~KTQVf-~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~~~~~dL~E~a~LaHDiG 109 (412)
T COG0232 47 AFRRLQDKTQVF-PLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLDLPFEDLVETACLAHDIG 109 (412)
T ss_pred HHHhhcccceec-ccccCCcccccchhhHHHHHHHHHHHHHhccccCCChHHHHHHHHHHhcCC
Confidence 345555555453 121 13445689999999999888877777 66677789999984
No 35
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=54.66 E-value=9.1 Score=36.66 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHhHhhcccccCcc---CCCCCCCCcHHhHHHHHHHHHHHhccCCC------CCHH---HHHHHHHhhhhh
Q 028340 86 LCHRLKTTKRAGWV---KRNVNNPESIADHMYRMGLMGLIMADIPG------IDRD---KCIKMAIVHDIA 144 (210)
Q Consensus 86 ~l~rLK~i~R~Gw~---~~gv~~~ESVAEHSf~vAliA~~la~~~~------vD~~---Kvv~mAL~HDLa 144 (210)
+..||++|+-.|-. ..|. ..|==|||-+|--||=.+.+..+ +|.+ -+..-||+||++
T Consensus 28 ~FQRLRrIkQLG~a~lvyPgA--nHTRFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG 96 (421)
T COG1078 28 EFQRLRRIKQLGLAYLVYPGA--NHTRFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG 96 (421)
T ss_pred HHHHHHHhhhccceeEecCCC--cccccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC
Confidence 56788888888755 3442 36667999999999987766431 2211 356789999984
No 36
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=51.03 E-value=21 Score=32.87 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=36.2
Q ss_pred CCc-HHhHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhhhhhhh
Q 028340 106 PES-IADHMYRMGLMGLIMADIP-GIDRDKCIKMAIVHDIAEAI 147 (210)
Q Consensus 106 ~ES-VAEHSf~vAliA~~la~~~-~vD~~Kvv~mAL~HDLaEa~ 147 (210)
.++ +|+|++-|+-++.-+++.+ .+|++=+..-+++||++=..
T Consensus 138 ~~~gLa~ht~~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~ 181 (287)
T COG3481 138 FEGGLAEHTLTVLELYKRISEIYPTVNRELIYAGAILHDIGKVL 181 (287)
T ss_pred hhcchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhcccccc
Confidence 466 8999999999999888877 79999999999999997443
No 37
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=41.27 E-value=69 Score=31.55 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=37.3
Q ss_pred HhHhhcccccCccCCCCC-CCCcHHhHHHHHHHHHHHhccCC--------CC---CHHHHHHHHHhhhhhh
Q 028340 87 CHRLKTTKRAGWVKRNVN-NPESIADHMYRMGLMGLIMADIP--------GI---DRDKCIKMAIVHDIAE 145 (210)
Q Consensus 87 l~rLK~i~R~Gw~~~gv~-~~ESVAEHSf~vAliA~~la~~~--------~v---D~~Kvv~mAL~HDLaE 145 (210)
-.||+.++-.|...-=.+ ...|=-|||..+-.+|..+.... ++ |..-+=.-+|+||++-
T Consensus 51 FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~El~It~~d~~~vqvA~LLHDIGH 121 (498)
T KOG2681|consen 51 FQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQCPELCITEVDLQAVQVAALLHDIGH 121 (498)
T ss_pred HHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 456666666664321111 24788999999999999765432 33 3333444689999863
No 38
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=40.96 E-value=36 Score=35.70 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=36.2
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCH-HH-HHHHHHhhhhhh------hhhcCCCCC
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDR-DK-CIKMAIVHDIAE------AIVGDITPS 154 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~-~K-vv~mAL~HDLaE------a~tGDI~~~ 154 (210)
.+++.||.-.||-+|-.++..+|+.. .+ +-.++++||++= .++|+-.++
T Consensus 673 ~q~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~~~FQ~yL~~~~~p 729 (844)
T TIGR02621 673 EVALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQRPRFQTMLGNRSYP 729 (844)
T ss_pred cEEHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCCHHHHHHhcCCCCc
Confidence 68999999999999999988776521 12 357999999974 345655443
No 39
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=33.61 E-value=86 Score=28.57 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=36.3
Q ss_pred hhhcCCCCCC---------------CCChhHhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhCCCHHHHH
Q 028340 146 AIVGDITPSD---------------GIPKEEKSQREREAITYMCKLL--GQGARAKEIDELWMEYEENSTAEAKI 203 (210)
Q Consensus 146 a~tGDI~~~~---------------~v~~~~K~~~E~~A~~~L~~~L--~p~~l~~e~~~Lw~EyE~~~T~EAkl 203 (210)
++..|+|||. +.+..-..+.+..++++.+.+| +..++++...++.++|. +.+|.+.
T Consensus 174 ~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~--~~~~v~~ 246 (260)
T COG1043 174 AVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYA--DNPEVKE 246 (260)
T ss_pred ccccCCCCeEEecCCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCCCCHHHHHHHHHHHhc--CChHHHH
Confidence 4567888874 1223333446677788777777 34567888888888874 6666543
No 40
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=32.65 E-value=25 Score=33.89 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=26.8
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC--CCH-------------HHHHHHHHhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPG--IDR-------------DKCIKMAIVHDIA 144 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~--vD~-------------~Kvv~mAL~HDLa 144 (210)
.-|=-.||..|+-+|-.++...+ ++. .=+-..||.||++
T Consensus 59 ~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiG 112 (440)
T PRK01096 59 IHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIG 112 (440)
T ss_pred CcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCC
Confidence 46778999999999887654321 211 1346789999984
No 41
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=32.33 E-value=37 Score=32.60 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=28.1
Q ss_pred CCcHHhHHHHHHHHHHHhccCC-C---------C-CHHHHHHHHHhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIP-G---------I-DRDKCIKMAIVHDIA 144 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~-~---------v-D~~Kvv~mAL~HDLa 144 (210)
.-|=-.||..||-+|-.++... + . |..=+-..||.|||+
T Consensus 56 ~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiG 105 (432)
T PRK05318 56 YRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIG 105 (432)
T ss_pred CcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCC
Confidence 4677899999999998766533 1 2 333345899999985
No 42
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=31.80 E-value=2e+02 Score=25.21 Aligned_cols=66 Identities=17% Similarity=0.351 Sum_probs=44.6
Q ss_pred CcCcHHHHHHHHHHhHhhccc-ccCccCCCCCCCC---cHH------hHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhh
Q 028340 74 SSSSSSVIDFLSLCHRLKTTK-RAGWVKRNVNNPE---SIA------DHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDI 143 (210)
Q Consensus 74 ~~~~~~~l~Fl~~l~rLK~i~-R~Gw~~~gv~~~E---SVA------EHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDL 143 (210)
...+....+.+..+.+|.... ++.|...++|+|| +.+ +|...+..+|. .-.|.|++
T Consensus 44 ~~~~~~~~~~~~~a~~ll~~~~~~~w~p~~iP~P~~~~~~~~~~~~~~~~n~l~~~A~--------------~fil~HE~ 109 (206)
T PF10463_consen 44 EELLQKAMDLFSWARSLLENFEFTSWDPEDIPNPEDFDDISPETVYGEKANDLFCCAI--------------AFILLHEL 109 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHhccccccCcccCCCcccccccccchhhHHHHHHHHHHHH--------------HHHHHHHH
Confidence 345666677777777776654 7888557899887 555 56555555543 33568888
Q ss_pred hhhhhcCCCC
Q 028340 144 AEAIVGDITP 153 (210)
Q Consensus 144 aEa~tGDI~~ 153 (210)
+=+..|-.-.
T Consensus 110 ~Hv~~~h~~~ 119 (206)
T PF10463_consen 110 AHVVLGHEGD 119 (206)
T ss_pred HHHHHcCccc
Confidence 8888887655
No 43
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=30.73 E-value=89 Score=32.22 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCcHHhHHHHHHHHHHHhccC------------C-CCCHHHHHH-HHHhhhhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADI------------P-GIDRDKCIK-MAIVHDIAEAI 147 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~------------~-~vD~~Kvv~-mAL~HDLaEa~ 147 (210)
..+|-+|+.++.-.+.-+... + +++...+++ -||+||++-..
T Consensus 426 ~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGKg~ 481 (850)
T TIGR01693 426 VYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGKGR 481 (850)
T ss_pred ecchhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhcCC
Confidence 469999998876555433221 1 343344444 48999999743
No 44
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.43 E-value=77 Score=33.41 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHhHh-hcccccC----ccCCCCCCCCcHHhHHHHHHHHHHHhccCC-------------CC-CHHHHHH
Q 028340 76 SSSSVIDFLSLCHRL-KTTKRAG----WVKRNVNNPESIADHMYRMGLMGLIMADIP-------------GI-DRDKCIK 136 (210)
Q Consensus 76 ~~~~~l~Fl~~l~rL-K~i~R~G----w~~~gv~~~ESVAEHSf~vAliA~~la~~~-------------~v-D~~Kvv~ 136 (210)
.+...+..++..+-| +.+|=|| .|+++.-..=+|-||+-++..-.--++.-. ++ +++=++.
T Consensus 409 ~~~r~l~~Mn~~GVLgrylPew~~Ivg~MQfdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~elLyl 488 (867)
T COG2844 409 AIRRTLRPMNRYGVLGRYLPEWGKIVGLMQFDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRELLYL 488 (867)
T ss_pred cHHHHHHHHHHhhhHHHhcccHHhhhcccccCcceecchhHHHHHHHHHHHHhhcccccccCccHHhhccCCCChhHHHH
Confidence 345555555555554 2466664 444433335789999999876655443321 23 5577888
Q ss_pred HHHhhhhhhhhhcCCC
Q 028340 137 MAIVHDIAEAIVGDIT 152 (210)
Q Consensus 137 mAL~HDLaEa~tGDI~ 152 (210)
-||+||++=-.-||-.
T Consensus 489 AaLfHDIaKGRggDHs 504 (867)
T COG2844 489 AALFHDIAKGRGGDHS 504 (867)
T ss_pred HHHHHHhhcCCCCchH
Confidence 9999999999999843
No 45
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=26.73 E-value=71 Score=29.51 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=30.4
Q ss_pred CcHHhHHHHHHHHHHHhccC--C--CCCHHH-----------HHHHHHhhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADI--P--GIDRDK-----------CIKMAIVHDIAEAI 147 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~--~--~vD~~K-----------vv~mAL~HDLaEa~ 147 (210)
=-..+|+..++..|+-++.- + +..+++ ++.-||+|||+..+
T Consensus 65 GGll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l 120 (327)
T PF07514_consen 65 GGLLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPL 120 (327)
T ss_pred CcHHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCcce
Confidence 34789999999999988663 2 444442 36789999999844
No 46
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=25.31 E-value=54 Score=33.72 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh---------hhhhcCCCCCCCCC
Q 028340 111 DHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA---------EAIVGDITPSDGIP 158 (210)
Q Consensus 111 EHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLa---------Ea~tGDI~~~~~v~ 158 (210)
.||--||-+|=..|+..|.|..=+-.-|.+||++ |=-+|+.++.+..+
T Consensus 492 ~HSvmVAnLAEaAa~~IGan~lLaRVgayYHDIGK~~rP~~FiENQ~~g~N~Hd~ls 548 (700)
T COG1480 492 QHSVMVANLAEAAAEEIGANSLLARVGAYYHDIGKMKRPLFFIENQMGGKNPHDDLS 548 (700)
T ss_pred cchhhHHHHHHHHHHHhCCchHHHHHHHHHhhcccccCCccccccccCCCCCcccCC
Confidence 5999999999998888899999999999999996 66678877777543
No 47
>PRK05092 PII uridylyl-transferase; Provisional
Probab=22.13 E-value=1.5e+02 Score=31.06 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=26.3
Q ss_pred CCcHHhHHHHHHHHHHHhcc------------CC-CCCHHHHHHH-HHhhhhhhhhhcC
Q 028340 106 PESIADHMYRMGLMGLIMAD------------IP-GIDRDKCIKM-AIVHDIAEAIVGD 150 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~------------~~-~vD~~Kvv~m-AL~HDLaEa~tGD 150 (210)
..+|-+|+.++--..--+.. .+ ++..-.++.+ ||+||++-...||
T Consensus 491 ~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGKg~~~d 549 (931)
T PRK05092 491 HYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAKGRPED 549 (931)
T ss_pred eccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Confidence 46999999987644332221 11 2333344455 5999998755443
Done!