Query 028340
Match_columns 210
No_of_seqs 132 out of 858
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dmb_A HD domain-containing pr 100.0 4.6E-43 1.6E-47 299.1 12.6 136 73-210 10-145 (204)
2 3kh1_A Predicted metal-depende 100.0 6.3E-42 2.2E-46 291.0 12.0 134 75-210 8-143 (200)
3 1xx7_A Oxetanocin-like protein 100.0 3.8E-37 1.3E-41 258.1 5.7 123 78-210 7-134 (184)
4 1ynb_A Hypothetical protein AF 100.0 1.2E-36 4.3E-41 253.6 3.0 120 74-210 4-126 (173)
5 2cqz_A 177AA long hypothetical 100.0 3.9E-35 1.3E-39 243.0 8.9 124 77-210 1-129 (177)
6 2paq_A 5'-deoxynucleotidase YF 100.0 3.7E-35 1.3E-39 248.3 8.5 127 80-210 5-141 (201)
7 3mzo_A LIN2634 protein; HD-dom 100.0 3.8E-34 1.3E-38 245.3 12.4 128 79-210 3-140 (216)
8 2gz4_A Hypothetical protein AT 99.9 4.2E-26 1.4E-30 195.0 8.5 113 79-210 27-142 (207)
9 3b57_A LIN1889 protein; Q92AN1 97.8 6.3E-05 2.1E-09 62.5 8.2 94 106-210 23-125 (209)
10 3dto_A BH2835 protein; all alp 97.4 0.00028 9.4E-09 60.0 7.1 94 106-210 23-124 (223)
11 2pjq_A Uncharacterized protein 97.3 0.00028 9.5E-09 59.7 5.7 94 106-210 28-130 (231)
12 3djb_A Hydrolase, HD family; a 97.3 0.00039 1.3E-08 59.0 6.0 94 106-210 23-124 (223)
13 2qgs_A Protein Se1688; alpha-h 97.1 0.0013 4.4E-08 55.3 7.3 93 106-210 23-125 (225)
14 3gw7_A Uncharacterized protein 97.0 0.00032 1.1E-08 60.3 2.6 94 109-210 26-129 (239)
15 2pq7_A Predicted HD superfamil 96.7 0.0025 8.5E-08 52.8 6.3 98 106-210 31-134 (220)
16 2hek_A Hypothetical protein; p 96.3 0.009 3.1E-07 54.3 7.6 60 86-147 27-90 (371)
17 2o08_A BH1327 protein; putativ 95.9 0.0036 1.2E-07 50.7 2.9 40 107-146 17-56 (188)
18 3ccg_A HD superfamily hydrolas 95.9 0.0041 1.4E-07 50.5 2.9 41 107-147 18-58 (190)
19 2ogi_A Hypothetical protein SA 95.8 0.0045 1.5E-07 50.7 2.9 40 107-146 25-64 (196)
20 3tm8_A BD1817, uncharacterized 94.9 0.1 3.6E-06 45.9 8.9 43 106-148 164-210 (328)
21 3hc1_A Uncharacterized HDOD do 92.7 0.1 3.5E-06 45.1 4.4 45 106-150 116-161 (305)
22 3m1t_A Putative phosphohydrola 92.6 0.077 2.6E-06 45.3 3.5 43 107-149 104-146 (275)
23 3ljx_A MMOQ response regulator 91.8 0.17 5.8E-06 43.5 4.7 44 107-150 107-151 (288)
24 2dqb_A Deoxyguanosinetriphosph 91.4 0.33 1.1E-05 44.3 6.4 58 86-144 54-111 (376)
25 3i7a_A Putative metal-dependen 87.7 0.35 1.2E-05 41.2 3.3 42 107-148 116-164 (281)
26 1vqr_A Hypothetical protein CJ 85.7 0.48 1.7E-05 40.5 3.1 44 107-150 123-167 (297)
27 3nr1_A HD domain-containing pr 84.5 6.7 0.00023 31.8 9.3 93 107-210 29-123 (178)
28 2q14_A Phosphohydrolase; BT420 84.3 1 3.5E-05 41.4 4.8 60 84-145 30-100 (410)
29 3mem_A Putative signal transdu 82.7 1.2 4.1E-05 40.9 4.6 44 106-149 276-323 (457)
30 3nqw_A CG11900; stringent resp 79.5 8.7 0.0003 31.1 8.2 93 107-210 31-125 (179)
31 3irh_A HD domain protein; phos 71.4 5.8 0.0002 37.4 5.8 58 85-144 62-137 (480)
32 1vj7_A Bifunctional RELA/SPOT; 65.8 13 0.00046 33.9 6.8 35 107-146 48-82 (393)
33 3u1n_A SAM domain and HD domai 62.0 10 0.00035 36.2 5.5 58 85-144 41-111 (528)
34 3kq5_A Hypothetical cytosolic 49.7 15 0.00052 33.8 4.3 43 106-148 73-120 (393)
35 3sk9_A Putative uncharacterize 46.5 14 0.00047 31.8 3.3 41 106-146 23-79 (265)
36 2ibn_A Inositol oxygenase; red 39.0 29 0.001 30.1 4.2 44 106-153 57-110 (250)
37 3bg2_A DGTP triphosphohydrolas 36.4 25 0.00084 32.6 3.5 59 85-144 42-119 (444)
38 2pgs_A Putative deoxyguanosine 30.7 32 0.0011 31.9 3.3 59 85-144 40-112 (451)
39 2q73_A MAZG, hypothetical prot 28.5 1.4E+02 0.0047 21.3 5.8 61 79-139 23-85 (100)
40 2q5z_A MAZG, hypothetical prot 21.0 1.9E+02 0.0066 21.1 5.5 60 80-139 44-105 (114)
No 1
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.6e-43 Score=299.06 Aligned_cols=136 Identities=49% Similarity=0.874 Sum_probs=127.4
Q ss_pred CCcCcHHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCC
Q 028340 73 FSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDIT 152 (210)
Q Consensus 73 ~~~~~~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~ 152 (210)
....++++++|+.++++||+++||||+.+|++++||||||||+||+||+++++. ++|++||++|||+||++|++||||+
T Consensus 10 ~~~~~~~~~~Fl~~~~~LK~i~R~g~~~~gv~~~ESVAEHS~~vAliA~~l~~~-~vD~~r~~~maL~HDl~E~~tGDit 88 (204)
T 4dmb_A 10 SGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDD-RLNKDRCVRLALVHDMAECIVGDIA 88 (204)
T ss_dssp ---CHHHHHHHHHHHHHGGGCBCHHHHHTTCSSCCBHHHHHHHHHHHHHHSCCT-TSCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred cccCHHHHHHHHHHHHHhccCccCCCcCCCCCCCCcHHHHHHHHHHHHHHHccc-cCCHHHHHHHHHhcchHHhhcCCCc
Confidence 345789999999999999999999999999977899999999999999999975 6999999999999999999999998
Q ss_pred CCCCCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 153 PSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 153 ~~~~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|++++.+.+|+++|++|+++++++| |++++++|.+||.|||+++|+||+|||++|||
T Consensus 89 p~k~~~~~~k~~~E~~A~~~l~~~L-P~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkl 145 (204)
T 4dmb_A 89 PADNIPKEEKHRREEEAMKQITQLL-PEDLRKELYELWEEYETQSSAEAKFVKQLDQC 145 (204)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred cccccchhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8888888999999999999999999 89999999999999999999999999999985
No 2
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=100.00 E-value=6.3e-42 Score=291.03 Aligned_cols=134 Identities=28% Similarity=0.475 Sum_probs=123.4
Q ss_pred cCcHHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC--CCCHHHHHHHHHhhhhhhhhhcCCC
Q 028340 75 SSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP--GIDRDKCIKMAIVHDIAEAIVGDIT 152 (210)
Q Consensus 75 ~~~~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~--~vD~~Kvv~mAL~HDLaEa~tGDI~ 152 (210)
.+++++++|+.++++||+++||||+.++. ++||||||||+||+||+++++.. ++|++||++|||+||++|++||||+
T Consensus 8 ~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~-r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~~tGDi~ 86 (200)
T 3kh1_A 8 SRLAAQMSFVVEIDKLKTILRQTLLTDSS-RRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTF 86 (200)
T ss_dssp HHHHHHHHHHHHGGGGGGCEEEEECTTSS-SEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhhCcCCcCCCcCCCC-CCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHHHhCCcc
Confidence 36899999999999999999999986554 48999999999999999999876 5999999999999999999999999
Q ss_pred CCCCCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 153 PSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 153 ~~~~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
++++..+..|+++|++|+++++++| |++++++|.+||.|||+++|+||+|||++|||
T Consensus 87 ~~~~~~~~~~~~~E~~A~~~l~~~L-P~~~~~e~~~Lw~EyE~~~t~Ea~~vK~~Dkl 143 (200)
T 3kh1_A 87 IHDEAGNEDKEERERKAAARLFGLL-PPDQAAEYSALWQEYEARETADARFADALDRL 143 (200)
T ss_dssp TTCCC---CHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9988778888999999999999999 89999999999999999999999999999985
No 3
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=100.00 E-value=3.8e-37 Score=258.10 Aligned_cols=123 Identities=38% Similarity=0.606 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC-----CCCCHHHHHHHHHhhhhhhhhhcCCC
Q 028340 78 SSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI-----PGIDRDKCIKMAIVHDIAEAIVGDIT 152 (210)
Q Consensus 78 ~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~-----~~vD~~Kvv~mAL~HDLaEa~tGDI~ 152 (210)
.+.++|+.++++||+++||||+.+|++++||||||||+||+||++++.+ .++|++|+++|||+||++|++|||||
T Consensus 7 ~~~~~Fl~~~~~Lk~v~R~~~~~~gv~~~EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~~~GDip 86 (184)
T 1xx7_A 7 HGSIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLP 86 (184)
T ss_dssp --CHHHHHHHHHTTTSBCHHHHHHTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred CCHHHHHHHHHHhccCcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHhhcCCCC
Confidence 3457899999999999999999888867899999999999999999975 48999999999999999999999995
Q ss_pred CCCCCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 153 PSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 153 ~~~~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
.+.+ ....+++.|++++++++ ++|++||.||++.+|+||++||++|||
T Consensus 87 ~~~~-~~~~~~~~E~~a~~~ll---------~e~~~l~~eye~~~t~Ea~~vK~aDkl 134 (184)
T 1xx7_A 87 LSAQ-KYLNKEEAEAKALKDVL---------PEYTELFEEYSKALTLEGQLVKIADKL 134 (184)
T ss_dssp HHHH-TTSCHHHHHHHHHHHHC---------GGGHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred Cccc-chHHHHHHHHHHHHHHH---------HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4433 34556789999999983 478999999999999999999999985
No 4
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=100.00 E-value=1.2e-36 Score=253.65 Aligned_cols=120 Identities=28% Similarity=0.353 Sum_probs=105.7
Q ss_pred CcCcHHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCH---HHHHHHHHhhhhhhhhhcC
Q 028340 74 SSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDR---DKCIKMAIVHDIAEAIVGD 150 (210)
Q Consensus 74 ~~~~~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~---~Kvv~mAL~HDLaEa~tGD 150 (210)
..++.++++|+.++++||+++||||+.+|+.++||||||||+||+||+++++..|+|+ +|+++|||+||++|++|||
T Consensus 4 ~~~~~~~~~Fl~~~~~LK~i~R~gw~~~gv~~~EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E~~~GD 83 (173)
T 1ynb_A 4 IKPMDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMD 83 (173)
T ss_dssp ---CHHHHHHHHHHHGGGGSBCGGGGGGTCSSCCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHHHHCC
T ss_pred hHhHHHHHHHHHHHHHhccCccCCcccCCCCCCCcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHHhhccC
Confidence 3478899999999999999999999999987799999999999999999998669999 9999999999999999999
Q ss_pred CCCCCCCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 151 ITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 151 I~~~~~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|+++++.... +.|++|++++++.| +|++||+|||+ |||++|||
T Consensus 84 i~~~~k~~~~---~~E~~a~~~l~~~L-------e~~~Lw~Eye~-------~vk~~Dkl 126 (173)
T 1ynb_A 84 LHKIARRYVS---CDEEGAREEQLSWM-------ESKPDFSDVEV-------YVSDADKL 126 (173)
T ss_dssp CCTTGGGTCC---CCHHHHHHHHTTTC-------SSCCCCGGGHH-------HHHHHHHH
T ss_pred CCcccccccc---HHHHHHHHHHHHhh-------hHHHHHHHHHH-------HHHHHHHH
Confidence 9887642222 46889999988776 58899999986 99999985
No 5
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.9e-35 Score=242.96 Aligned_cols=124 Identities=40% Similarity=0.609 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC-----CCCCHHHHHHHHHhhhhhhhhhcCC
Q 028340 77 SSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI-----PGIDRDKCIKMAIVHDIAEAIVGDI 151 (210)
Q Consensus 77 ~~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~-----~~vD~~Kvv~mAL~HDLaEa~tGDI 151 (210)
|+++++|+.++++||+++||||+.+|++++|||||||||||++|+.++.. .++|+.+++.|||+||++|+++|||
T Consensus 1 ~~~~~~F~~~~~~Lk~i~R~~~~~~g~~~~esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~~~GD~ 80 (177)
T 2cqz_A 1 MKVMIEKILLVQTLKRLPRMGWLIKGVQEPESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAIITDI 80 (177)
T ss_dssp ---CHHHHHHHGGGGTSBCHHHHHTTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCC
T ss_pred CchHHHHHHHHHHhccCccCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHcCCC
Confidence 45678999999999999999999999877999999999999999999975 5899999999999999999999999
Q ss_pred CCCCCCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 152 TPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 152 ~~~~~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|.+ ......++..|+++++++ | +++.++|.||++..|+|+++||++|||
T Consensus 81 p~~-~~~~~~~~~~E~~a~~~~---l------~~i~~l~~ef~~~~t~Ea~~vk~aDrL 129 (177)
T 2cqz_A 81 PLS-AQEFVDKDKAEALVFKKV---F------PEFYELYREYQECSSPEAQLVRIADKL 129 (177)
T ss_dssp CTT-TTTTSCHHHHHHHHHHHT---C------GGGHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred ccc-cccHHHHHHHHHHHHHHH---H------HHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 443 334556678899999887 3 468899999999999999999999986
No 6
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=100.00 E-value=3.7e-35 Score=248.30 Aligned_cols=127 Identities=21% Similarity=0.285 Sum_probs=111.3
Q ss_pred HHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhc----cCC--CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 028340 80 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMA----DIP--GIDRDKCIKMAIVHDIAEAIVGDITP 153 (210)
Q Consensus 80 ~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la----~~~--~vD~~Kvv~mAL~HDLaEa~tGDI~~ 153 (210)
+++|+.++++||+++||||+ ++++ +||||||||+||+||++++ ..+ ++|++|+++|||+||++|+++|||++
T Consensus 5 ~~~f~~~~~rLK~i~R~~~~-~~~~-~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~ 82 (201)
T 2paq_A 5 QSHFFAHLSRLKLINRWPLM-RNVR-TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPT 82 (201)
T ss_dssp CCCHHHHHGGGGGCBSCTTS-CCSS-CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCC
T ss_pred HHHHHHHHHhhccCccCCCC-CCCC-CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCc
Confidence 45799999999999999998 6675 7999999999999999998 444 79999999999999999999999987
Q ss_pred CCC----CChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 154 SDG----IPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 154 ~~~----v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|.+ .....+.+.|++++++|++.| |++++++|..+|.||+ .+|+||++||++|+|
T Consensus 83 p~k~~~~~~~~~~~~~E~~~~~~i~~~L-p~~~~~e~~~l~~e~e-~~t~ea~lvk~aD~l 141 (201)
T 2paq_A 83 PVKYFNSQIAQEYKAIEKIAQQKLVDMV-PEELRDIFAPLIDEHA-YSDEEKSLVKQADAL 141 (201)
T ss_dssp C---------CTHHHHHHHHHHHHHTTS-CGGGHHHHHHHHTTTS-CCHHHHHHHHHHHHH
T ss_pred hHhhhchHHHHHhcccHHHHHHHHHHhC-CHHHHHHHHHHHhccc-CCCHHHHHHHHHHHH
Confidence 653 223445688989999999999 8999999999999997 699999999999985
No 7
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=100.00 E-value=3.8e-34 Score=245.31 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=111.1
Q ss_pred HHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccC---C--CCCHHHHHHHHHhhhhhhhhhcCCCC
Q 028340 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI---P--GIDRDKCIKMAIVHDIAEAIVGDITP 153 (210)
Q Consensus 79 ~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~---~--~vD~~Kvv~mAL~HDLaEa~tGDI~~ 153 (210)
++.+|+.++++||+|+||+|+. +. ++||||||||+||+||++++.+ . ++|++|+++|||+||++|++||||++
T Consensus 3 ~~~~Fl~~~~rLK~i~Rw~~~~-~~-~~EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~~GDi~t 80 (216)
T 3mzo_A 3 GIHQYFQSLSDLENIYRCPGKF-KY-QEHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELFIGDIKT 80 (216)
T ss_dssp SHHHHHHHHHHGGGCBSSCSSC-CS-SCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGTSCCCCS
T ss_pred cHHHHHHHHHhcCcccCcCCCC-CC-CCCCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHHcCCCCc
Confidence 4789999999999999999995 44 4799999999999999999842 2 69999999999999999999999998
Q ss_pred CCCC-Ch---hHhHHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 154 SDGI-PK---EEKSQREREAITYM-CKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 154 ~~~v-~~---~~K~~~E~~A~~~L-~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
|.+- .+ ..+++.|+++++++ ++.| |++++++|.++|.|+ +.+|+|+++||++|||
T Consensus 81 Pvk~~~~~~~~~~~~~E~~a~~~li~~~L-P~~~~~~~~~~~~e~-~~~t~ea~~vK~aDkl 140 (216)
T 3mzo_A 81 PVKYATTELREMLSEVEESMTKNFISREI-PATFQPIYRHLLKEG-KDSTLEGKILAISDKV 140 (216)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHSCC-CSSSHHHHHHHHHHHH
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHH
Confidence 8753 22 23457899999985 5999 888999999999984 6799999999999985
No 8
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=99.93 E-value=4.2e-26 Score=194.98 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=95.9
Q ss_pred HHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCC-
Q 028340 79 SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGI- 157 (210)
Q Consensus 79 ~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v- 157 (210)
..++|...+++||++.||||+.+|++ +||||||||+||+||+.+.. ++| .|+++|||+||++|+++|||+++.+-
T Consensus 27 ~~i~i~dia~~Lk~i~R~~~~~~~~~-~eSVAeHS~~va~ia~~l~~--~~~-~r~~~~aL~HD~~E~~~GDi~tPvK~~ 102 (207)
T 2gz4_A 27 LDVEIADIAHGLARVARWNGQTRGDH-AFTVAQHCLIVETIFCRMCP--GAT-PDEMQMALLHDAPEYVIGDMISPFKSV 102 (207)
T ss_dssp GGCCHHHHHHHHTTCBSGGGCCSSSS-CCBHHHHHHHHHHHHHHHCT--TCC-HHHHHHHHTTTTTHHHHCCCCGGGGGT
T ss_pred hhhhHHHHHHHHhhCcccCCCCCCCC-CccHHHHHHHHHHHHHHHCC--CCC-HHHHHHHHhcCchHhhccCCChHhhhh
Confidence 34689999999999999999988765 79999999999999999873 688 68999999999999999999988752
Q ss_pred ChhHhHHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 158 PKEEKSQREREAITYMCK--LLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 158 ~~~~K~~~E~~A~~~L~~--~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
-...+++.|+++++.|+. .| |. +..+.|+++||++|||
T Consensus 103 l~~~yk~iE~~~~~~i~~~f~L-p~--------------~~~~~e~~lVK~aDkl 142 (207)
T 2gz4_A 103 VGGGYKTVEKRLEAAVHLRFGL-PP--------------HASRELKDRIKKADTV 142 (207)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC-CS--------------SCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCC-CC--------------CCChHHHHHHHHHHHH
Confidence 224556899999998887 56 43 4567899999999985
No 9
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=97.80 E-value=6.3e-05 Score=62.49 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=58.6
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHH
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~ 184 (210)
+...-+|+.+|+-+|..++...+.|++.+...||+||+ |+.+...... .=.+...+++..+| |+...+
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDi-----g~~~~~~~~~------~~a~~a~~~L~~~g~~~~~~~ 91 (209)
T 3b57_A 23 TGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDY-----SDIKLTTDEQ------EATKTLINWMETKEIPSELIK 91 (209)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTC-----CC-------C------HHHHHHHHHHHHTTCCHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc-----CcccCCCchH------HHHHHHHHHHHHCCCCHHHHH
Confidence 45568999999999999887668999999999999998 5554322111 11122334444443 444445
Q ss_pred HHHHHHHH--Hh------hCCCHHHHHHhhhccC
Q 028340 185 EIDELWME--YE------ENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~E--yE------~~~T~EAklVK~aDKL 210 (210)
.+..+... |. ...|+|+++|.+||+|
T Consensus 92 ~V~~~I~~Hs~~~~~~~~~~~~~ea~iv~dAD~L 125 (209)
T 3b57_A 92 KIIRIIQSVSFKKGKNTFKALTIEEKIVQDADRL 125 (209)
T ss_dssp HHHHHHHHHC---------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccccCCCCCCCCHHHHHHcCHHHH
Confidence 55554433 22 3469999999999985
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=97.43 E-value=0.00028 Score=60.02 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=58.4
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHH
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~ 184 (210)
+.-.-+|+.+|+-+|..++...++|++.+...||+||++ |..... .... =.+.+.+++..+| |+...+
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig-----~~k~~~---~~~~---ga~~a~~~L~~~g~~~~~i~ 91 (223)
T 3dto_A 23 SGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLI-----DDKLVD---DPET---AKQQLIDWMEAAGVPSQKID 91 (223)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTT-----C----------CH---HHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-----ccccCC---CHHH---HHHHHHHHHHHcCCCHHHHH
Confidence 355679999999999998876789999999999999996 322111 1111 1112334444443 555555
Q ss_pred HHHHHHHH--Hh-----hCCCHHHHHHhhhccC
Q 028340 185 EIDELWME--YE-----ENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~E--yE-----~~~T~EAklVK~aDKL 210 (210)
.+..+... |. ...|+|+++|.++|+|
T Consensus 92 ~V~~~I~~Hs~~~~~~~~p~tlEa~IV~dADrL 124 (223)
T 3dto_A 92 HTMDIINTISFKGGHGQSLATREAMVVQDADRL 124 (223)
T ss_dssp HHHHHHHCC----------CCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCccCCCCCCCCHHHHHHHhHHHH
Confidence 55555432 22 2579999999999986
No 11
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=97.31 E-value=0.00028 Score=59.67 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=60.4
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHH
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~ 184 (210)
+.-.-+|+.+|+-+|..++...++|++-+...||+||++ |. .+. .... .=.+...+++..+| |+...+
T Consensus 28 ~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDig-----k~-k~~--~~~~---~ga~~a~~~L~~~g~~~~~~~ 96 (231)
T 2pjq_A 28 SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVI-----DD-KLM--ANPA---KAHQDLIVQLNAQNVTADDQT 96 (231)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-----C---------------CHHHHHHHHHTTTCCHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCC-----cc-cCC--ChHH---HHHHHHHHHHHHCCCCHHHHH
Confidence 355689999999999999876689999999999999985 41 111 1100 01122334444443 444555
Q ss_pred HHHHHHH--HHhh------CCCHHHHHHhhhccC
Q 028340 185 EIDELWM--EYEE------NSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~--EyE~------~~T~EAklVK~aDKL 210 (210)
.+..+.. .|.. ..++|+++|.++|+|
T Consensus 97 ~V~~~I~~Hs~~~~~~~~~~~~~ea~Iv~dAD~L 130 (231)
T 2pjq_A 97 AIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRL 130 (231)
T ss_dssp HHHHHHTSCCTGGGGGCCCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccCCCCCCCHHHHHHHHHHHH
Confidence 5555544 2322 468999999999974
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=97.26 E-value=0.00039 Score=59.03 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=58.3
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHH
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~ 184 (210)
+.-.-+|+.+|+-+|..++...+.|++.+...||+||++-...+| . ...- .+.+.+++..+| |+...+
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~k~~~---h-----~~~g---a~~a~~~L~~~g~~~~~i~ 91 (223)
T 3djb_A 23 SGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNE---S-----EEAG---MKKVSDWLEELHVEEEESK 91 (223)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCS---S-----STTT---HHHHHHHHHHTCCCHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccccCC---c-----HHHH---HHHHHHHHHHCCCCHHHHH
Confidence 355689999999999999887789999999999999997422111 1 1110 012233444443 544455
Q ss_pred HHHHHHHH--Hh-----hCCCHHHHHHhhhccC
Q 028340 185 EIDELWME--YE-----ENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~E--yE-----~~~T~EAklVK~aDKL 210 (210)
.+..+... |. ...|+|+++|.++|+|
T Consensus 92 ~V~~~I~~Hs~~~~~~~~p~tlea~iV~dADrL 124 (223)
T 3djb_A 92 HVLHIIANMSYKGGHGGKVESIEGKLVQDADRL 124 (223)
T ss_dssp HHHHHTTCCC-----------HHHHHHHHHHHT
T ss_pred HHHHHHHHhCCccCCCCCCCCHHHHHHHhHHHH
Confidence 55544431 21 2578999999999986
No 13
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=97.07 E-value=0.0013 Score=55.26 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=61.5
Q ss_pred CCcHHhHHHHHHHHHHHh-ccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHH
Q 028340 106 PESIADHMYRMGLMGLIM-ADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARA 183 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~l-a~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~ 183 (210)
+.-.-+|+.+|+-+|..+ +...++|++.+...||+||++-. .+. ... .=.+...+++..+| |.+..
T Consensus 23 ~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~------~~~---~~~---~ga~~a~~~L~~~g~~~~~i 90 (225)
T 2qgs_A 23 TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS------KLT---DEI---LAYDQLKQFLSTLDLSSEIS 90 (225)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC------SSS---CHH---HHHHHHHHHHHTTTCCHHHH
T ss_pred CccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC------CCC---cHH---HHHHHHHHHHHHCCCCHHHH
Confidence 456789999999999988 87778999999999999998631 111 111 11123344555443 54455
Q ss_pred HHHHHHHH--HHhh------CCCHHHHHHhhhccC
Q 028340 184 KEIDELWM--EYEE------NSTAEAKIVKDFDKV 210 (210)
Q Consensus 184 ~e~~~Lw~--EyE~------~~T~EAklVK~aDKL 210 (210)
+.+..+.. .|.. ..|+|+++|.+||+|
T Consensus 91 ~~V~~~I~~Hs~~~~~~~~~~~~~e~~Iv~dAD~L 125 (225)
T 2qgs_A 91 QQVLYIIKHMSYRAGKNNHVKLSIDGEIVRDADRL 125 (225)
T ss_dssp HHHHHHHHTTC-------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCCCCCCCCCHHHHHHHhhHHH
Confidence 55655543 2221 459999999999974
No 14
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=96.96 E-value=0.00032 Score=60.35 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCC--CCChhHhHHHHHHHHHHHHHh--cC-CchHH
Q 028340 109 IADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSD--GIPKEEKSQREREAITYMCKL--LG-QGARA 183 (210)
Q Consensus 109 VAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~--~v~~~~K~~~E~~A~~~L~~~--L~-p~~l~ 183 (210)
.-+|+.+|+-+|..++...+.|++.+...||+||++ +.+.+. +...... -. +.+.+++.. +| |+...
T Consensus 26 ~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig-----~~~~~~~~~~~H~~~--ga-~~A~~~L~~~~~g~~~e~i 97 (239)
T 3gw7_A 26 DVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIV-----SLAKNHPQRQRSSIL--AA-EETRRLLREEFEQFPAEKI 97 (239)
T ss_dssp -CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTT-----C--------CCSSHH--HH-HHHHHHHHHHTTSSCTTTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-----cccccCCccccHHHH--HH-HHHHHHHHhccCCcCHHHH
Confidence 458999999999999887789999999999999993 432221 1111111 11 122333333 32 33333
Q ss_pred HHHHHHHHH--Hh---hCCCHHHHHHhhhccC
Q 028340 184 KEIDELWME--YE---ENSTAEAKIVKDFDKV 210 (210)
Q Consensus 184 ~e~~~Lw~E--yE---~~~T~EAklVK~aDKL 210 (210)
+.+..+... |. ...|+|+++|.+||+|
T Consensus 98 ~~V~~~I~~Hs~~~~~~p~t~Ea~IV~DADrL 129 (239)
T 3gw7_A 98 EAVCHAIAAHSFSAQIAPLTTEAKIVQDADRL 129 (239)
T ss_dssp TSTTTGGGSSCTTSCCCCCSHHHHHHHHHTGG
T ss_pred HHHHHHHHHcCCCCCCCCCChHHHHHHhHHHH
Confidence 333333221 21 3579999999999986
No 15
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=96.74 E-value=0.0025 Score=52.79 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=59.5
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC-CchHHH
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG-QGARAK 184 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~-p~~l~~ 184 (210)
+...-+|+.+|+.+|..++...+.|.+.+..-||+||++..+.. +.+..+... =.+.+++++..+| |....+
T Consensus 31 ~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~~~~----~~~~~H~~~---ga~~a~~~L~~~~~~~~~i~ 103 (220)
T 2pq7_A 31 PAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEA----LTGVDHAES---GAEYASGLLPTMGFDISFVA 103 (220)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHH----HHCCCHHHH---HHHHHHHHGGGGTCCHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCcccC----CCcCCHHHH---HHHHHHHHHHHCCCCHHHHH
Confidence 46678999999999999988668999999999999999432110 001111111 1111223333332 333334
Q ss_pred HHHHHHHHH-----hhCCCHHHHHHhhhccC
Q 028340 185 EIDELWMEY-----EENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~Ey-----E~~~T~EAklVK~aDKL 210 (210)
.+..+...- ....++|+++|.+||+|
T Consensus 104 ~v~~~I~~H~~~~~~~~~~~~a~Iv~dAD~L 134 (220)
T 2pq7_A 104 EVSKAIRSHRYSGGLTPTSLTGKILQDADRL 134 (220)
T ss_dssp HHHHHHHHCC-----CCCSHHHHHHHHHHHG
T ss_pred HHHHHHHHcCcccCCCCCCHHHHHHHHhhHH
Confidence 444443311 13458999999999975
No 16
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=96.30 E-value=0.009 Score=54.31 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=47.0
Q ss_pred HHhHhhcccccC---ccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCH-HHHHHHHHhhhhhhhh
Q 028340 86 LCHRLKTTKRAG---WVKRNVNNPESIADHMYRMGLMGLIMADIPGIDR-DKCIKMAIVHDIAEAI 147 (210)
Q Consensus 86 ~l~rLK~i~R~G---w~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~-~Kvv~mAL~HDLaEa~ 147 (210)
...||+.++-.| ++..|. ..+--+||.+|+.+|..++...++|. +.+...||+||++-..
T Consensus 27 ~fqRLr~i~QlG~~~~v~p~a--~~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~p 90 (371)
T 2hek_A 27 PFQRLRYVKQLGLAYLVFPSA--QHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPP 90 (371)
T ss_dssp HHHGGGGSBTTTTGGGTSTTC--CCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCS
T ss_pred HHhCccccCccCccceeeCCC--CCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCccc
Confidence 456777777767 444442 37899999999999999988778887 6788899999996543
No 17
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=95.95 E-value=0.0036 Score=50.74 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=36.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa 146 (210)
+..-+||.+||.+|..+|...|+|.+++...+|+||++-.
T Consensus 17 ~~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 17 EHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 5688999999999999998889999999999999999865
No 18
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=95.88 E-value=0.0041 Score=50.55 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=36.6
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAI 147 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~ 147 (210)
+..-+||.+||.+|..++...|+|.+++...+|+||++-..
T Consensus 18 ~~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 18 EKRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 35778999999999999988899999999999999997653
No 19
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=95.80 E-value=0.0045 Score=50.67 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=36.9
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa 146 (210)
+..-+||.+||.+|..+|...|+|.+++...+|+||++-.
T Consensus 25 ~~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 25 DKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 5688999999999999998889999999999999999765
No 20
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=94.93 E-value=0.1 Score=45.88 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=36.4
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHH----HHHHHHhhhhhhhhh
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDK----CIKMAIVHDIAEAIV 148 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~K----vv~mAL~HDLaEa~t 148 (210)
.+...+||.+||.+|..++...|++.+. +..-||+||++-+.+
T Consensus 164 ~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~i 210 (328)
T 3tm8_A 164 DKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHS 210 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTC
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccC
Confidence 4789999999999999999887887665 555899999997754
No 21
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=92.67 E-value=0.1 Score=45.12 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=40.1
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhcC
Q 028340 106 PESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVGD 150 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~v-D~~Kvv~mAL~HDLaEa~tGD 150 (210)
.+..-.||.++|.+|..++...+. |.+++...+|+||++...+-+
T Consensus 116 ~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIGkl~l~~ 161 (305)
T 3hc1_A 116 RSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINF 161 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhHHHHHH
Confidence 467899999999999999987765 899999999999999998765
No 22
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=92.59 E-value=0.077 Score=45.29 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=39.0
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhc
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVG 149 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tG 149 (210)
+..-.||.++|.+|..++...+.|.+++...+|+||++....-
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdiGkl~l~ 146 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIV 146 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccHHHHH
Confidence 5688999999999999998778999999999999999998763
No 23
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=91.82 E-value=0.17 Score=43.52 Aligned_cols=44 Identities=2% Similarity=0.060 Sum_probs=38.5
Q ss_pred CcHHhHHHHHHHHHHHhccCCCC-CHHHHHHHHHhhhhhhhhhcC
Q 028340 107 ESIADHMYRMGLMGLIMADIPGI-DRDKCIKMAIVHDIAEAIVGD 150 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~v-D~~Kvv~mAL~HDLaEa~tGD 150 (210)
+..-.||.++|.+|..++...+. +.+++...+|+||++....-.
T Consensus 107 ~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agLLhdiGkl~l~~ 151 (288)
T 3ljx_A 107 AAYWQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALAT 151 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccHHHHHH
Confidence 45789999999999999987755 899999999999999988644
No 24
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=91.42 E-value=0.33 Score=44.33 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhh
Q 028340 86 LCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIA 144 (210)
Q Consensus 86 ~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLa 144 (210)
...||+.+.-......| ...-|--+||-.||.+|..++...++|.+-+-..||.|||+
T Consensus 54 ~FrRL~~ktQv~~~~~~-d~~~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 54 AFRRLEYKTQVLPGWAG-DYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHGGGSCSSSCSCC---CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHcCCCccccCCCC-cccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45667655544333222 11257889999999999999988899988888899999997
No 25
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=87.74 E-value=0.35 Score=41.17 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.2
Q ss_pred CcHHhHHHHHHHHHHHhccCC-------CCCHHHHHHHHHhhhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIP-------GIDRDKCIKMAIVHDIAEAIV 148 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~-------~vD~~Kvv~mAL~HDLaEa~t 148 (210)
+..-.||.++|.+|..++... +.|++++...+|+||++...+
T Consensus 116 ~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~~~~laGLLHdiGkl~l 164 (281)
T 3i7a_A 116 DEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPV 164 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHCCHHHH
Confidence 457899999999999888653 689999999999999998764
No 26
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=85.68 E-value=0.48 Score=40.50 Aligned_cols=44 Identities=5% Similarity=-0.076 Sum_probs=37.1
Q ss_pred CcHHhHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhhhhhhhhcC
Q 028340 107 ESIADHMYRMGLMGLIMADIP-GIDRDKCIKMAIVHDIAEAIVGD 150 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~-~vD~~Kvv~mAL~HDLaEa~tGD 150 (210)
+..-.||.++|.+|..++... +.|.+++...+|+||++...+-+
T Consensus 123 ~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aGLLHDIGkl~l~~ 167 (297)
T 1vqr_A 123 QNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSN 167 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHccHHHHHH
Confidence 457889999999999887765 57889999999999999998644
No 27
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=84.47 E-value=6.7 Score=31.81 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=49.0
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC--CchHHH
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG--QGARAK 184 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~--p~~l~~ 184 (210)
|.--.|-..||.| ++...|+.-..++.-||+||..|- +++ +.++-++.==..+..++..+- +.....
T Consensus 29 ~PYi~Hpl~VA~i---l~~~~~~~d~~~i~AALLHDvvED--t~~------t~e~i~~~FG~~Va~lV~gvTk~~~~~~~ 97 (178)
T 3nr1_A 29 TPYINHPIGVARI---LTHEAGITDIVVLQAALLHDTVED--TDT------TLDEVELHFGAQVRRLVEEVTDDKTLPKL 97 (178)
T ss_dssp CBTTHHHHHHHHH---HHHTSCCCCHHHHHHHHHTTHHHH--SSC------CHHHHHHHHHHHHHHHHHHTCCCTTSCHH
T ss_pred CcHHHHHHHHHHH---HHHHcCCCCHHHHHHHHhhhHHhc--CCC------CHHHHHHHHCHHHHHHHHHHHhccccchh
Confidence 5556899998866 433336644567888999999995 222 222111111122333444331 100011
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 185 EIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
+-....-|--....+.+.+||.||+|
T Consensus 98 ~~~~~q~e~~~~~d~rvvlIKLADRl 123 (178)
T 3nr1_A 98 ERKRLQVEQAPHSSPGAKLVKLADKL 123 (178)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 11111222223688999999999985
No 28
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=84.28 E-value=1 Score=41.44 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=44.9
Q ss_pred HHHHhHhhcccccCcc---CCCCCCCCcHHhHHHHHHHHHHHhccCCC-----CC---HHHHHHHHHhhhhhh
Q 028340 84 LSLCHRLKTTKRAGWV---KRNVNNPESIADHMYRMGLMGLIMADIPG-----ID---RDKCIKMAIVHDIAE 145 (210)
Q Consensus 84 l~~l~rLK~i~R~Gw~---~~gv~~~ESVAEHSf~vAliA~~la~~~~-----vD---~~Kvv~mAL~HDLaE 145 (210)
-....||+.++-.|.. ..|- ..|=-+||..|+-+|..++...+ +| .+.+...||+||++=
T Consensus 30 s~~fqRL~~~~Qlg~~~~v~p~a--~htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh 100 (410)
T 2q14_A 30 HPLLQRLTRIKQVGLSSVVYPGA--QHTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGH 100 (410)
T ss_dssp SHHHHGGGGSBTTTTTTTTCTTC--CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHhHhhhhccCCceeecCCC--CCCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC
Confidence 3457789998887643 3442 36999999999999998776542 44 477888999999963
No 29
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=82.71 E-value=1.2 Score=40.91 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=38.8
Q ss_pred CCcHHhHHHHHHHHHHHhccCCC----CCHHHHHHHHHhhhhhhhhhc
Q 028340 106 PESIADHMYRMGLMGLIMADIPG----IDRDKCIKMAIVHDIAEAIVG 149 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~----vD~~Kvv~mAL~HDLaEa~tG 149 (210)
.+..-.||.++|.+|..++...+ .+.+++...+|+||++....-
T Consensus 276 ~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~aflaGLLhDIGkl~l~ 323 (457)
T 3mem_A 276 YVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLA 323 (457)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHHH
Confidence 57899999999999999987653 478999999999999999874
No 30
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=79.50 E-value=8.7 Score=31.10 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=48.5
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCCCChhHhHHHHHHHHHHHHHhcC--CchHHH
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLG--QGARAK 184 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~v~~~~K~~~E~~A~~~L~~~L~--p~~l~~ 184 (210)
|.--.|-..||.| ++...|+.-...+.-||+||..|- ++++ .++-++.==..+..++..+- +.....
T Consensus 31 ~pyi~Hpl~VA~i---la~~l~~~D~~~i~AAlLHDvvED--t~~t------~e~i~~~FG~~Va~lV~gvtk~~~~~~~ 99 (179)
T 3nqw_A 31 TPYVNHVINVSTI---LSVEACITDEGVLMAALLHDVVED--TDAS------FEDVEKLFGPDVCGLVREVTDDKSLEKQ 99 (179)
T ss_dssp CBTHHHHHHHHHH---HHTTTCCCCHHHHHHHHTTTHHHH--SSCC------HHHHHHHHCHHHHHHHHHTCCCTTSCHH
T ss_pred CcHHHHHHHHHHH---HHHHcCCCCHHHHHHHHhhhHHhc--CCCC------HHHHHHHHCHHHHHHHHHHHhccccCHH
Confidence 5567899998765 553336633457888999999995 2222 11111111122333444331 100011
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340 185 EIDELWMEYEENSTAEAKIVKDFDKV 210 (210)
Q Consensus 185 e~~~Lw~EyE~~~T~EAklVK~aDKL 210 (210)
+-....-|--....+.+.+||.||++
T Consensus 100 ~~~~~q~e~~r~~d~rvvlIKLADRl 125 (179)
T 3nqw_A 100 ERKRLQIENAAKSSCRAKLIKLADKL 125 (179)
T ss_dssp HHHHHHHHSSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11111111113578999999999985
No 31
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=71.36 E-value=5.8 Score=37.42 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=40.6
Q ss_pred HHHhHhhcccccCc---cCCCCCCCCcHHhHHHHHHHHHHHhccCC------------CCCH---HHHHHHHHhhhhh
Q 028340 85 SLCHRLKTTKRAGW---VKRNVNNPESIADHMYRMGLMGLIMADIP------------GIDR---DKCIKMAIVHDIA 144 (210)
Q Consensus 85 ~~l~rLK~i~R~Gw---~~~gv~~~ESVAEHSf~vAliA~~la~~~------------~vD~---~Kvv~mAL~HDLa 144 (210)
....||+.++-.|. +..|- .-|=-+||..|+-+|-.++... +++. .-+...||+||++
T Consensus 62 ~~FqRLr~i~QlG~~~~v~pga--~HTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 62 AEVQRLRRIKQLGTSSFTFHGA--EHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp HHHHGGGGSBSSTTGGGTSTTC--CCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred HHHHhhhhhhcccccceecCCC--CcCHHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 45778988888774 44442 4699999999999998655422 1332 3345789999985
No 32
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=65.85 E-value=13 Score=33.88 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=26.8
Q ss_pred CcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh
Q 028340 107 ESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA 146 (210)
Q Consensus 107 ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa 146 (210)
|.--.|-..||.+ ++++ +.|.+ .+.-||+||..|-
T Consensus 48 ePYi~Hpl~VA~i---La~l-~~D~~-~i~AALLHDvvED 82 (393)
T 1vj7_A 48 EPYIVHPIQVAGI---LADL-HLDAV-TVACGFLHDVVED 82 (393)
T ss_dssp CBTTHHHHHHHHH---HHHT-TCCHH-HHHHHHHTTHHHH
T ss_pred CcHHHHHHHHHHH---HHHh-cCCHH-HHHHHHhhhHHhc
Confidence 5566899998877 5554 67766 6788999999985
No 33
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=61.96 E-value=10 Score=36.17 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=40.0
Q ss_pred HHHhHhhcccccCc---cCCCCCCCCcHHhHHHHHHHHHHHhccCC-------CCCH---HHHHHHHHhhhhh
Q 028340 85 SLCHRLKTTKRAGW---VKRNVNNPESIADHMYRMGLMGLIMADIP-------GIDR---DKCIKMAIVHDIA 144 (210)
Q Consensus 85 ~~l~rLK~i~R~Gw---~~~gv~~~ESVAEHSf~vAliA~~la~~~-------~vD~---~Kvv~mAL~HDLa 144 (210)
....||+.+.-.|. +..|- ..|=-+||..|+-+|..++... +++. .-+...||+||++
T Consensus 41 ~~FqRLr~i~Qlg~~~~v~pga--~hTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 41 PQFQRLRYIKQLGGGYYVFPGA--SHNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp HHHHGGGGSBTTGGGTTTCTTC--CCBHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHhhccCccccCCcccccCCC--CcCHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 45678888888774 44442 3688999999999998665431 3443 2345579999995
No 34
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=49.73 E-value=15 Score=33.84 Aligned_cols=43 Identities=9% Similarity=-0.075 Sum_probs=34.0
Q ss_pred CCcHHhHHHH-HHHHHHHhccCC--CCCHH--HHHHHHHhhhhhhhhh
Q 028340 106 PESIADHMYR-MGLMGLIMADIP--GIDRD--KCIKMAIVHDIAEAIV 148 (210)
Q Consensus 106 ~ESVAEHSf~-vAliA~~la~~~--~vD~~--Kvv~mAL~HDLaEa~t 148 (210)
+=-..||+.. |+.+|.-++..+ +.+++ =++.-||+|||+-+++
T Consensus 73 ~GGLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~t 120 (393)
T 3kq5_A 73 LCSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV 120 (393)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhee
Confidence 4568999999 999999988765 33344 5588999999998863
No 35
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=46.47 E-value=14 Score=31.80 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCcHHhHHHHHHHHHHHh------------ccCCCCCH----HHHHHHHHhhhhhhh
Q 028340 106 PESIADHMYRMGLMGLIM------------ADIPGIDR----DKCIKMAIVHDIAEA 146 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~l------------a~~~~vD~----~Kvv~mAL~HDLaEa 146 (210)
-..+..|+..||-+|..+ +..+|++. +-+..++.+||++=.
T Consensus 23 ~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~ 79 (265)
T 3sk9_A 23 FHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKA 79 (265)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcccc
Confidence 588999999999999974 33336764 345668999999875
No 36
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=39.02 E-value=29 Score=30.14 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=33.5
Q ss_pred CCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhh----------hhcCCCC
Q 028340 106 PESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEA----------IVGDITP 153 (210)
Q Consensus 106 ~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa----------~tGDI~~ 153 (210)
.-+=-+|++++|-.|-- .|-|.+-+...||+|||+-+ ++||..+
T Consensus 57 ~v~ql~HaLQTAe~ar~----dg~d~dw~~laaLlHDLGkll~~~~~~qW~vvgdtfp 110 (250)
T 2ibn_A 57 DFPNSFHAFQTAEGIRK----AHPDKDWFHLVGLLHDLGKVLALFGEPQWAVVGDTFP 110 (250)
T ss_dssp CCCHHHHHHHHHHHHHH----HSTTCHHHHHHHHHTTGGGHHHHTTCCGGGTSSCCCB
T ss_pred cccHHHHHHHHHHHHHH----hCcChhHHHHHHHHhccHhhhcccCCcchhhccCccc
Confidence 35557999999887542 26677888899999999985 4788665
No 37
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=36.39 E-value=25 Score=32.64 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC---------------CCCHH----HHHHHHHhhhhh
Q 028340 85 SLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP---------------GIDRD----KCIKMAIVHDIA 144 (210)
Q Consensus 85 ~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~---------------~vD~~----Kvv~mAL~HDLa 144 (210)
....||+.+.--|-...+ ...-|=-+||..|+-+|--++... +++.+ -+-..||.|||+
T Consensus 42 ~~frRL~~ktQv~~~~~~-~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~HDiG 119 (444)
T 3bg2_A 42 APFRSLQDKTQVIPLSKT-DFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG 119 (444)
T ss_dssp HHHHHGGGCBCSCC---C-CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHhhhccCCccCCCCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHhcccC
Confidence 346678777776654321 125788999999999997554432 12222 345789999985
No 38
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=30.65 E-value=32 Score=31.87 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC----------CCCH----HHHHHHHHhhhhh
Q 028340 85 SLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP----------GIDR----DKCIKMAIVHDIA 144 (210)
Q Consensus 85 ~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~----------~vD~----~Kvv~mAL~HDLa 144 (210)
....||+.+.--|-...+ ...-|=-+||..|+-+|--++... +++. .-+-..||.|||+
T Consensus 40 ~~frRL~~~tQv~~~~~~-~~~htR~~Hsl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~a~L~HDiG 112 (451)
T 2pgs_A 40 GAFRRLGRKTQVHPVSSN-DHIHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIG 112 (451)
T ss_dssp HHHHGGGGCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHhhhccCCcccCCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHhhccC
Confidence 346678777776655321 125788999999999997554322 2233 2345789999995
No 39
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=28.48 E-value=1.4e+02 Score=21.35 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHhhcccccCccCCCCC--CCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 028340 79 SVIDFLSLCHRLKTTKRAGWVKRNVN--NPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139 (210)
Q Consensus 79 ~~l~Fl~~l~rLK~i~R~Gw~~~gv~--~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL 139 (210)
-...+..+++-|....+|++...... ..+.+.+=.--+-+....+|..+|+|++.++...+
T Consensus 23 ~~~kL~eE~gEl~e~~~~~~~~~~~~~~~~~~i~eELgDvL~~l~~lA~~lgiDle~al~~k~ 85 (100)
T 2q73_A 23 YFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 34557778888877777654422110 13667766666666666778878999999977554
No 40
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=20.97 E-value=1.9e+02 Score=21.14 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=37.9
Q ss_pred HHHHHHHHhHhhcccccCccC--CCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 028340 80 VIDFLSLCHRLKTTKRAGWVK--RNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139 (210)
Q Consensus 80 ~l~Fl~~l~rLK~i~R~Gw~~--~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL 139 (210)
...+..+++-|....+|+.-. ......+.+.+=.--+-+....+|..+|+|++.++...+
T Consensus 44 ~~kL~eE~gEl~e~i~~~~~~~~~~~~~~~~l~eELgDvL~~l~~LA~~lgiDle~al~~k~ 105 (114)
T 2q5z_A 44 FFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTRELKE 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 455677777777766653211 100114677776666666666777777999999987643
Done!