Query 028341
Match_columns 210
No_of_seqs 144 out of 285
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lsj_B DNA polymerase kappa; R 5.4 2.1E+02 0.0071 16.9 0.0 6 129-134 12-17 (26)
2 3zs9_C Golgi to ER traffic pro 3.6 5.7E+02 0.019 16.3 1.9 7 75-81 3-9 (38)
3 2iel_A Hypothetical protein TT 3.4 3.1E+02 0.011 21.8 0.7 11 83-93 120-130 (138)
4 3cra_A Protein MAZG; tandem-re 3.4 9.2E+02 0.031 20.8 3.8 15 126-140 148-162 (265)
5 1tc3_C Protein (TC3 transposas 2.8 3.6E+02 0.012 14.9 0.3 7 105-111 28-34 (51)
6 3ogk_Q JAZ1 incomplete degron 2.8 6.9E+02 0.024 14.0 1.5 8 129-136 10-17 (22)
7 2esy_A LUNG surfactant protein 2.6 3.7E+02 0.013 16.5 0.3 6 88-93 12-17 (32)
8 1b0n_B Protein (SINI protein); 2.6 7.1E+02 0.024 16.7 1.7 12 81-92 17-28 (57)
9 1t5i_A C_terminal domain of A 2.4 6E+02 0.021 18.9 1.3 20 91-110 108-127 (172)
10 4eu0_A PELD; C-DI-GMP, signali 2.4 5.7E+02 0.019 22.2 1.2 15 80-94 172-186 (298)
No 1
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=5.43 E-value=2.1e+02 Score=16.93 Aligned_cols=6 Identities=67% Similarity=0.938 Sum_probs=3.5
Q ss_pred HHHHHh
Q 028341 129 KARAER 134 (210)
Q Consensus 129 KkRAER 134 (210)
|||+||
T Consensus 12 KKRser 17 (26)
T 2lsj_B 12 KKRSER 17 (26)
Confidence 456665
No 2
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=3.56 E-value=5.7e+02 Score=16.25 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.1
Q ss_pred CCChHHH
Q 028341 75 LVTDTQK 81 (210)
Q Consensus 75 ~lSd~EK 81 (210)
+||+.|+
T Consensus 3 els~~ek 9 (38)
T 3zs9_C 3 ELTEAEK 9 (38)
T ss_dssp -CCHHHH
T ss_pred ccCHHHH
Confidence 4555553
No 3
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=3.45 E-value=3.1e+02 Score=21.82 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=8.8
Q ss_pred HHHHhhhCCCC
Q 028341 83 IRRAERFGMPV 93 (210)
Q Consensus 83 ~~RAeRFGip~ 93 (210)
..||.+||+|+
T Consensus 120 asrAr~~gvPV 130 (138)
T 2iel_A 120 HTQAERFGLPV 130 (138)
T ss_dssp HHHGGGGSSCE
T ss_pred HHHHHhcCCCE
Confidence 45888899986
No 4
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=3.44 E-value=9.2e+02 Score=20.79 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.0
Q ss_pred HHHHHHHHhhCCCCC
Q 028341 126 LKRKARAERFGLPVP 140 (210)
Q Consensus 126 eKlKkRAERFG~~~~ 140 (210)
.|+.+||.|.|+.-+
T Consensus 148 ~kiq~raa~vGfdw~ 162 (265)
T 3cra_A 148 QKIQKRCANVGFDWT 162 (265)
T ss_dssp HHHHHHHHTTTCSCS
T ss_pred HHHHHHHHhcCCCCC
Confidence 355555555555443
No 5
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=2.80 E-value=3.6e+02 Score=14.89 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=5.2
Q ss_pred HhhhCCC
Q 028341 105 AERFGTG 111 (210)
Q Consensus 105 AeRFGl~ 111 (210)
|+.||++
T Consensus 28 A~~lgis 34 (51)
T 1tc3_C 28 SRKISRS 34 (51)
T ss_dssp HHHHTCC
T ss_pred HHHHCcC
Confidence 6778875
No 6
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=2.78 E-value=6.9e+02 Score=14.03 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.7
Q ss_pred HHHHHhhC
Q 028341 129 KARAERFG 136 (210)
Q Consensus 129 KkRAERFG 136 (210)
.||.+|++
T Consensus 10 eKRk~R~~ 17 (22)
T 3ogk_Q 10 EKRKDRVT 17 (26)
T ss_pred HHHHHHhh
Confidence 44444544
No 7
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=2.64 E-value=3.7e+02 Score=16.46 Aligned_cols=6 Identities=67% Similarity=1.580 Sum_probs=4.1
Q ss_pred hhCCCC
Q 028341 88 RFGMPV 93 (210)
Q Consensus 88 RFGip~ 93 (210)
|||||-
T Consensus 12 rf~IPc 17 (32)
T 2esy_A 12 RFGIPF 17 (32)
T ss_dssp SSSCCS
T ss_pred cccCcc
Confidence 677764
No 8
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=2.55 E-value=7.1e+02 Score=16.68 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=9.7
Q ss_pred HHHHHHhhhCCC
Q 028341 81 KKIRRAERFGMP 92 (210)
Q Consensus 81 Kk~~RAeRFGip 92 (210)
+...||+++|++
T Consensus 17 ~LI~~Ak~lGls 28 (57)
T 1b0n_B 17 ELMVEAKEANIS 28 (57)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 567799999986
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=2.41 E-value=6e+02 Score=18.88 Aligned_cols=20 Identities=45% Similarity=0.587 Sum_probs=11.3
Q ss_pred CCCCCCHHHHHHHHHhhhCC
Q 028341 91 MPVQMSEEEKRNTRAERFGT 110 (210)
Q Consensus 91 ip~~lse~eKkk~RAeRFGl 110 (210)
+|.+...-..+.-|+-|+|-
T Consensus 108 ~p~~~~~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 108 MPEDSDTYLHRVARAGRFGT 127 (172)
T ss_dssp CCSSHHHHHHHHHHHTGGGC
T ss_pred CCCCHHHHHHHhcccccCCC
Confidence 33333345566677777774
No 10
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=2.37 E-value=5.7e+02 Score=22.21 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=10.3
Q ss_pred HHHHHHHhhhCCCCC
Q 028341 80 QKKIRRAERFGMPVQ 94 (210)
Q Consensus 80 EKk~~RAeRFGip~~ 94 (210)
+|...||+|||++.+
T Consensus 172 ~r~~~~a~~~gi~ss 186 (298)
T 4eu0_A 172 KRSLLDARDHGLPAC 186 (298)
T ss_dssp HHHHHHHHHHCCCEE
T ss_pred HHHHHHHHhcCCCeE
Confidence 355667888888754
Done!