Query 028341
Match_columns 210
No_of_seqs 144 out of 285
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 16:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028341.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028341hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okga3 d.26.1.3 (A:302-373) 3 10.2 51 0.0037 22.0 1.4 16 20-35 8-23 (72)
2 d2iela1 c.26.2.4 (A:2-135) Hyp 8.7 46 0.0033 24.8 0.7 11 83-93 119-129 (134)
3 d1kjqa3 d.142.1.2 (A:113-318) 6.6 1.8E+02 0.013 19.9 3.2 32 80-111 3-39 (206)
4 d2gz4a1 a.211.1.1 (A:6-205) Hy 6.2 1.6E+02 0.012 22.7 2.9 22 77-98 103-126 (200)
5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 5.9 64 0.0047 20.9 0.3 33 102-138 29-62 (66)
6 d1o57a1 a.4.5.40 (A:2-74) N-te 5.5 55 0.004 22.0 -0.3 8 202-209 61-68 (73)
7 d1z6ra2 c.55.1.10 (A:82-210) M 4.6 1.4E+02 0.01 19.4 1.4 29 82-110 98-127 (129)
8 d1woqa1 c.55.1.10 (A:11-139) I 4.3 1.4E+02 0.01 19.3 1.2 25 86-110 101-126 (129)
9 d2lhba_ a.1.1.2 (A:) Lamprey g 3.4 3.4E+02 0.025 18.3 2.8 20 67-86 2-21 (149)
10 d1nexa1 a.157.1.1 (A:116-185) 3.4 1.8E+02 0.013 18.4 1.1 16 87-102 53-68 (70)
No 1
>d1okga3 d.26.1.3 (A:302-373) 3-mercaptopyruvate sulfurtransferase, C-terminal domain {Leishmania major [TaxId: 5664]}
Probab=10.23 E-value=51 Score=21.97 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=13.9
Q ss_pred CcCCCCCCCCCCCCCC
Q 028341 20 ASAEGNPKNNVGPMDL 35 (210)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (210)
.+..+||+-+||.+++
T Consensus 8 p~LgdNpKA~ld~~Tl 23 (72)
T d1okga3 8 PSLGDNPKANLDTMTL 23 (72)
T ss_dssp CCCTTSCBCCTTTCCE
T ss_pred cccCCCchhcccceEE
Confidence 3578999999999987
No 2
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus thermophilus [TaxId: 274]}
Probab=8.73 E-value=46 Score=24.80 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=8.8
Q ss_pred HHHHhhhCCCC
Q 028341 83 IRRAERFGMPV 93 (210)
Q Consensus 83 ~~RAeRFGip~ 93 (210)
-.||.|||+|+
T Consensus 119 ~~raRr~~lPV 129 (134)
T d2iela1 119 HTQAERFGLPV 129 (134)
T ss_dssp HHHGGGGSSCE
T ss_pred HHHHHHcCCCe
Confidence 45788999986
No 3
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}
Probab=6.56 E-value=1.8e+02 Score=19.87 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=19.9
Q ss_pred HHHHHHH-hhhCCCCCC----CHHHHHHHHHhhhCCC
Q 028341 80 QKKIRRA-ERFGMPVQM----SEEEKRNTRAERFGTG 111 (210)
Q Consensus 80 EKk~~RA-eRFGip~~l----se~eKkk~RAeRFGl~ 111 (210)
||..+.| +..|||++- ...+-...=++++|.+
T Consensus 3 ~~~rrla~~~~Gip~p~~~~v~s~~dl~~~~~~ig~P 39 (206)
T d1kjqa3 3 EGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYP 39 (206)
T ss_dssp HHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCCCCeEECCHHHHHHHHHHhCCC
Confidence 3444435 689999763 2344455568889976
No 4
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.18 E-value=1.6e+02 Score=22.66 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=13.5
Q ss_pred ChHHHHHHHH--hhhCCCCCCCHH
Q 028341 77 TDTQKKIRRA--ERFGMPVQMSEE 98 (210)
Q Consensus 77 Sd~EKk~~RA--eRFGip~~lse~ 98 (210)
-+.|.+...| .|||+|..++.+
T Consensus 103 ~~~E~rl~~aI~~rFGLp~~lp~~ 126 (200)
T d2gz4a1 103 KTVEKRLEAAVHLRFGLPPHASRE 126 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHH
Confidence 3445555544 578888777654
No 5
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.87 E-value=64 Score=20.87 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=16.9
Q ss_pred HHHHhhhCCCCCCCCCCcccc-hHHHHHHHHHHhhCCC
Q 028341 102 NTRAERFGTGSKTQGSEVSKT-SEELKRKARAERFGLP 138 (210)
Q Consensus 102 k~RAeRFGl~~~~~~s~~~K~-~eeeKlKkRAERFG~~ 138 (210)
..=|..||++.. +++.- -..++...-.++||..
T Consensus 29 ~eIA~~fGv~~S----Tvs~IlKnK~kil~~~~~~g~~ 62 (66)
T d1hlva1 29 GEIARRFNIPPS----TLSTILKNKRAILASERKYGVA 62 (66)
T ss_dssp HHHHHHHTCCHH----HHHHHHHTHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCChh----HHHHHHHHHHHHHHHHHHcCcc
Confidence 345778888631 11110 1234555666777764
No 6
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=5.52 E-value=55 Score=21.98 Aligned_cols=8 Identities=50% Similarity=0.929 Sum_probs=4.8
Q ss_pred hccccCCC
Q 028341 202 ITGEADGV 209 (210)
Q Consensus 202 ~~~~~~~~ 209 (210)
|+|.+|||
T Consensus 61 i~GAaGGv 68 (73)
T d1o57a1 61 VPGAAGGV 68 (73)
T ss_dssp ECSTTCEE
T ss_pred ecCCCCCe
Confidence 45666665
No 7
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=4.56 E-value=1.4e+02 Score=19.38 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHh-hhCC
Q 028341 82 KIRRAERFGMPVQMSEEEKRNTRAE-RFGT 110 (210)
Q Consensus 82 k~~RAeRFGip~~lse~eKkk~RAe-RFGl 110 (210)
+..=.++||+|+.+...-.-...|| +||.
T Consensus 98 ~~~l~~~~~~pV~~~NDa~a~alaE~~~G~ 127 (129)
T d1z6ra2 98 GEALEQHTGVPVYIQHDISAWTMAEALFGA 127 (129)
T ss_dssp HHHHHHHHSSCEEEEEHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCEEEEehHHHHHHHHHhhCC
Confidence 3344568888887766666666666 3554
No 8
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=4.26 E-value=1.4e+02 Score=19.33 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=17.5
Q ss_pred HhhhCCCCCCCHHHHHHHHHhh-hCC
Q 028341 86 AERFGMPVQMSEEEKRNTRAER-FGT 110 (210)
Q Consensus 86 AeRFGip~~lse~eKkk~RAeR-FGl 110 (210)
.++||+|+.+...-....-||+ ||.
T Consensus 101 ~~~~~~pv~i~NDan~aalgE~~~Ga 126 (129)
T d1woqa1 101 TARLGRPVEVINDADAAGLAEARYGA 126 (129)
T ss_dssp HHHHTSCEEEEEHHHHHHHHHHHHST
T ss_pred HHhcCCcEEEEEhHHHHHHHHHhhcc
Confidence 4667888877666777777764 664
No 9
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}
Probab=3.41 E-value=3.4e+02 Score=18.29 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=13.8
Q ss_pred CCCCCCCCCCChHHHHHHHH
Q 028341 67 SPVSGDADLVTDTQKKIRRA 86 (210)
Q Consensus 67 ~~~~~~~~~lSd~EKk~~RA 86 (210)
..++....+||+.|+...|.
T Consensus 2 ~~~~~~~~~Ls~~e~~~I~~ 21 (149)
T d2lhba_ 2 IVDTGSVAPLSAAEKTKIRS 21 (149)
T ss_dssp CCSSSCCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHH
Confidence 34455567899998877664
No 10
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.38 E-value=1.8e+02 Score=18.41 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=9.5
Q ss_pred hhhCCCCCCCHHHHHH
Q 028341 87 ERFGMPVQMSEEEKRN 102 (210)
Q Consensus 87 eRFGip~~lse~eKkk 102 (210)
+.|||+...+.+|..+
T Consensus 53 ~~f~I~~D~t~eEe~~ 68 (70)
T d1nexa1 53 RTFNIVNDFTPEEEAA 68 (70)
T ss_dssp HHHTCCCCCCHHHHHT
T ss_pred HHhCCCCCCCHHHHHh
Confidence 4577776666555543
Done!