Query 028342
Match_columns 210
No_of_seqs 153 out of 1711
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.1E-19 3.7E-24 130.8 7.8 84 88-172 6-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 2.2E-18 7.6E-23 119.2 3.5 70 102-173 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 4.5E-17 1.5E-21 105.7 4.4 51 121-171 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 2.2E-16 7.4E-21 108.6 5.9 55 120-175 13-67 (74)
5 2ect_A Ring finger protein 126 99.6 3.8E-16 1.3E-20 108.4 5.7 55 120-175 13-67 (78)
6 2kiz_A E3 ubiquitin-protein li 99.6 4.5E-16 1.5E-20 105.6 5.4 53 120-173 12-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.6 2.6E-16 8.7E-21 110.7 3.9 52 122-173 15-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 3.4E-15 1.1E-19 96.7 4.8 50 121-171 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 8.6E-15 2.9E-19 108.7 4.7 51 122-173 25-95 (114)
10 3dpl_R Ring-box protein 1; ubi 99.5 1.1E-14 3.9E-19 107.5 4.7 49 122-171 37-100 (106)
11 2d8s_A Cellular modulator of i 99.5 1.6E-14 5.4E-19 101.6 5.0 54 119-174 12-72 (80)
12 2ea6_A Ring finger protein 4; 99.5 1.4E-14 4.7E-19 97.7 4.4 52 120-172 13-68 (69)
13 3ng2_A RNF4, snurf, ring finge 99.5 9.4E-15 3.2E-19 99.3 3.2 53 120-173 8-64 (71)
14 2xeu_A Ring finger protein 4; 99.5 1.3E-14 4.3E-19 96.5 2.7 52 121-173 2-57 (64)
15 2ecn_A Ring finger protein 141 99.5 1.9E-14 6.6E-19 97.7 3.2 52 120-176 13-64 (70)
16 1chc_A Equine herpes virus-1 r 99.4 1.1E-13 3.6E-18 93.4 5.4 50 121-173 4-53 (68)
17 2d8t_A Dactylidin, ring finger 99.4 8E-14 2.8E-18 95.1 4.0 50 120-173 13-62 (71)
18 4a0k_B E3 ubiquitin-protein li 99.4 1.3E-14 4.5E-19 108.9 -0.1 50 122-171 48-111 (117)
19 2ct0_A Non-SMC element 1 homol 99.4 1.3E-13 4.5E-18 95.4 4.7 53 120-175 13-67 (74)
20 2djb_A Polycomb group ring fin 99.4 2.9E-13 1E-17 92.5 5.5 50 121-173 14-63 (72)
21 2ct2_A Tripartite motif protei 99.4 4.2E-13 1.4E-17 94.6 5.8 53 120-173 13-69 (88)
22 2yur_A Retinoblastoma-binding 99.3 8.8E-13 3E-17 90.7 5.0 51 121-174 14-66 (74)
23 2csy_A Zinc finger protein 183 99.3 1.1E-12 3.6E-17 91.6 5.3 47 121-171 14-60 (81)
24 2ysl_A Tripartite motif-contai 99.3 1.4E-12 4.7E-17 89.0 5.3 49 121-173 19-70 (73)
25 2ecy_A TNF receptor-associated 99.3 1.3E-12 4.6E-17 87.6 4.0 49 121-173 14-63 (66)
26 4ayc_A E3 ubiquitin-protein li 99.3 1.2E-12 4E-17 100.6 3.7 47 123-173 54-100 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.3 1.5E-12 5.3E-17 98.0 3.0 54 121-175 6-63 (133)
28 3lrq_A E3 ubiquitin-protein li 99.3 3.4E-12 1.2E-16 92.8 4.3 47 122-172 22-70 (100)
29 1t1h_A Gspef-atpub14, armadill 99.2 7.3E-12 2.5E-16 86.5 5.1 48 121-172 7-55 (78)
30 2ecw_A Tripartite motif-contai 99.2 9E-12 3.1E-16 86.9 5.5 48 121-172 18-71 (85)
31 2ysj_A Tripartite motif-contai 99.2 9.6E-12 3.3E-16 82.5 5.4 43 120-166 18-63 (63)
32 4ap4_A E3 ubiquitin ligase RNF 99.2 3.2E-12 1.1E-16 96.2 3.3 53 120-173 70-126 (133)
33 2ecv_A Tripartite motif-contai 99.2 8.7E-12 3E-16 86.9 4.7 48 121-172 18-71 (85)
34 2y43_A E3 ubiquitin-protein li 99.2 8.4E-12 2.9E-16 90.2 4.6 47 122-172 22-69 (99)
35 2egp_A Tripartite motif-contai 99.2 2.8E-12 9.6E-17 88.6 1.8 48 121-172 11-65 (79)
36 1g25_A CDK-activating kinase a 99.2 8.5E-12 2.9E-16 83.4 3.8 51 122-173 3-56 (65)
37 2ecj_A Tripartite motif-contai 99.2 1.5E-11 5.2E-16 79.9 4.0 42 121-166 14-58 (58)
38 2ckl_A Polycomb group ring fin 99.2 1.1E-11 3.7E-16 91.1 3.7 49 122-173 15-63 (108)
39 3fl2_A E3 ubiquitin-protein li 99.1 2.3E-11 7.8E-16 91.5 4.3 47 122-172 52-99 (124)
40 2ckl_B Ubiquitin ligase protei 99.1 2.6E-11 8.8E-16 95.6 4.7 47 123-172 55-102 (165)
41 3ztg_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 85.5 5.0 49 120-171 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 99.1 3.4E-11 1.2E-15 88.5 3.7 46 123-172 22-70 (112)
43 2vje_A E3 ubiquitin-protein li 99.1 7E-11 2.4E-15 79.1 3.3 49 121-173 7-58 (64)
44 3hct_A TNF receptor-associated 99.1 7.9E-11 2.7E-15 87.9 3.8 48 121-172 17-65 (118)
45 1rmd_A RAG1; V(D)J recombinati 99.1 9.7E-11 3.3E-15 87.0 4.2 48 122-173 23-71 (116)
46 1z6u_A NP95-like ring finger p 99.1 9.7E-11 3.3E-15 91.3 4.4 48 122-173 78-126 (150)
47 1e4u_A Transcriptional repress 99.1 2.1E-10 7.1E-15 79.9 5.5 55 120-175 9-65 (78)
48 3l11_A E3 ubiquitin-protein li 99.0 4.4E-11 1.5E-15 88.7 1.4 47 122-172 15-62 (115)
49 2y1n_A E3 ubiquitin-protein li 99.0 2.4E-10 8.1E-15 101.5 5.1 49 122-174 332-381 (389)
50 1bor_A Transcription factor PM 99.0 6.3E-11 2.2E-15 77.2 1.1 48 120-174 4-51 (56)
51 2vje_B MDM4 protein; proto-onc 99.0 1.5E-10 5.2E-15 77.2 2.8 51 121-173 6-57 (63)
52 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.7E-10 6E-15 100.4 2.4 54 120-173 306-374 (381)
53 3knv_A TNF receptor-associated 98.9 2.4E-10 8.4E-15 88.2 2.0 48 121-172 30-78 (141)
54 2kr4_A Ubiquitin conjugation f 98.9 1.2E-09 4.1E-14 77.1 5.3 48 121-172 13-60 (85)
55 4ic3_A E3 ubiquitin-protein li 98.9 6.6E-10 2.3E-14 76.3 2.9 46 122-175 24-70 (74)
56 2kre_A Ubiquitin conjugation f 98.9 1.2E-09 4.2E-14 79.5 4.1 48 121-172 28-75 (100)
57 1wgm_A Ubiquitin conjugation f 98.9 1.8E-09 6E-14 78.4 4.5 48 121-172 21-69 (98)
58 1jm7_B BARD1, BRCA1-associated 98.8 5.6E-10 1.9E-14 83.1 1.4 44 122-171 22-66 (117)
59 2ea5_A Cell growth regulator w 98.8 4.5E-09 1.6E-13 71.1 4.9 49 121-177 14-63 (68)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.8 3.2E-09 1.1E-13 70.3 3.7 48 120-171 4-58 (60)
61 3hcs_A TNF receptor-associated 98.7 4.6E-09 1.6E-13 82.8 3.8 49 121-173 17-66 (170)
62 2ecg_A Baculoviral IAP repeat- 98.7 7.3E-09 2.5E-13 71.1 3.2 44 123-174 26-70 (75)
63 2yu4_A E3 SUMO-protein ligase 98.7 1E-08 3.4E-13 73.6 4.0 46 121-169 6-59 (94)
64 2c2l_A CHIP, carboxy terminus 98.6 1.9E-08 6.6E-13 84.3 4.9 48 121-172 207-255 (281)
65 2yho_A E3 ubiquitin-protein li 98.6 1.2E-08 4.2E-13 71.0 3.0 48 123-178 19-67 (79)
66 1wim_A KIAA0161 protein; ring 98.6 1.2E-08 4.1E-13 72.9 2.8 47 122-169 5-61 (94)
67 2f42_A STIP1 homology and U-bo 98.4 1.3E-07 4.4E-12 75.7 4.5 48 121-172 105-153 (179)
68 2bay_A PRE-mRNA splicing facto 98.4 1E-07 3.5E-12 63.1 3.0 48 123-173 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.4 7.8E-08 2.7E-12 84.3 2.0 45 122-174 295-340 (345)
70 3nw0_A Non-structural maintena 98.3 9E-07 3.1E-11 73.8 5.5 51 121-174 179-231 (238)
71 3htk_C E3 SUMO-protein ligase 98.3 4.5E-07 1.5E-11 76.4 3.7 47 122-171 181-231 (267)
72 3vk6_A E3 ubiquitin-protein li 98.0 5.6E-06 1.9E-10 59.7 3.7 49 124-175 3-52 (101)
73 2ko5_A Ring finger protein Z; 96.8 0.0018 6E-08 46.0 4.6 48 123-175 29-76 (99)
74 2lri_C Autoimmune regulator; Z 96.7 0.0017 5.7E-08 43.3 3.8 47 120-170 10-60 (66)
75 1wil_A KIAA1045 protein; ring 94.4 0.034 1.1E-06 38.6 3.5 35 120-156 13-47 (89)
76 3o36_A Transcription intermedi 93.9 0.028 9.4E-07 44.4 2.4 47 121-171 3-53 (184)
77 2jun_A Midline-1; B-BOX, TRIM, 93.8 0.041 1.4E-06 38.8 3.1 34 122-156 3-36 (101)
78 2l5u_A Chromodomain-helicase-D 93.8 0.049 1.7E-06 35.3 3.2 45 120-168 9-57 (61)
79 1we9_A PHD finger family prote 93.3 0.026 8.8E-07 36.8 1.2 49 120-168 4-57 (64)
80 2puy_A PHD finger protein 21A; 92.7 0.015 5.2E-07 37.6 -0.6 50 121-174 4-57 (60)
81 3lqh_A Histone-lysine N-methyl 92.6 0.052 1.8E-06 43.1 2.3 48 122-169 2-63 (183)
82 3u5n_A E3 ubiquitin-protein li 92.6 0.032 1.1E-06 44.9 1.0 47 120-170 5-55 (207)
83 1mm2_A MI2-beta; PHD, zinc fin 92.5 0.03 1E-06 36.4 0.6 47 120-170 7-57 (61)
84 2k16_A Transcription initiatio 91.9 0.047 1.6E-06 36.7 1.1 50 121-171 17-70 (75)
85 2l8s_A Integrin alpha-1; trans 91.1 0.78 2.7E-05 29.0 6.0 34 46-79 6-39 (54)
86 1xwh_A Autoimmune regulator; P 90.5 0.051 1.7E-06 35.8 0.1 45 120-168 6-54 (66)
87 1fp0_A KAP-1 corepressor; PHD 89.8 0.15 5.1E-06 35.7 2.0 47 120-170 23-73 (88)
88 2yql_A PHD finger protein 21A; 89.6 0.053 1.8E-06 34.4 -0.4 45 120-168 7-55 (56)
89 2knc_A Integrin alpha-IIB; tra 89.2 1.7 6E-05 27.4 6.5 33 47-79 10-42 (54)
90 2ku3_A Bromodomain-containing 88.9 0.18 6E-06 33.8 1.8 49 120-168 14-65 (71)
91 1wep_A PHF8; structural genomi 88.9 0.39 1.3E-05 32.5 3.6 49 121-170 11-64 (79)
92 2vpb_A Hpygo1, pygopus homolog 88.2 0.42 1.4E-05 31.3 3.3 34 122-155 8-42 (65)
93 1f62_A Transcription factor WS 88.0 0.3 1E-05 30.0 2.4 44 124-168 2-49 (51)
94 2lbm_A Transcriptional regulat 87.9 0.67 2.3E-05 35.2 4.6 46 120-169 61-117 (142)
95 2l43_A N-teminal domain from h 87.9 0.16 5.6E-06 35.3 1.1 50 120-169 23-75 (88)
96 3v43_A Histone acetyltransfera 87.8 0.17 5.6E-06 36.7 1.1 46 123-168 62-111 (112)
97 2ri7_A Nucleosome-remodeling f 86.9 0.16 5.4E-06 39.4 0.6 48 121-169 7-59 (174)
98 2yt5_A Metal-response element- 86.6 0.36 1.2E-05 31.3 2.2 51 120-170 4-62 (66)
99 3ql9_A Transcriptional regulat 86.3 0.94 3.2E-05 33.8 4.6 48 120-171 55-113 (129)
100 2kgg_A Histone demethylase jar 86.1 0.32 1.1E-05 30.3 1.6 44 124-167 4-52 (52)
101 2k1a_A Integrin alpha-IIB; sin 86.1 2 6.9E-05 25.6 5.1 31 46-76 7-37 (42)
102 1wev_A Riken cDNA 1110020M19; 85.9 0.16 5.4E-06 35.4 0.1 51 122-172 16-75 (88)
103 2ro1_A Transcription intermedi 85.5 0.19 6.6E-06 39.8 0.5 45 122-170 2-50 (189)
104 2ysm_A Myeloid/lymphoid or mix 84.7 0.39 1.3E-05 34.5 1.8 47 120-167 5-55 (111)
105 4gne_A Histone-lysine N-methyl 84.6 0.9 3.1E-05 32.8 3.7 48 120-173 13-66 (107)
106 3v43_A Histone acetyltransfera 84.6 1 3.5E-05 32.4 4.1 46 122-167 5-62 (112)
107 2e6s_A E3 ubiquitin-protein li 83.3 0.3 1E-05 33.2 0.6 45 123-168 27-76 (77)
108 3asl_A E3 ubiquitin-protein li 83.0 0.36 1.2E-05 32.1 0.9 44 124-168 20-68 (70)
109 2kwj_A Zinc finger protein DPF 82.6 0.46 1.6E-05 34.5 1.5 34 123-156 2-41 (114)
110 1wem_A Death associated transc 80.8 0.93 3.2E-05 30.3 2.4 46 122-169 16-70 (76)
111 2e6r_A Jumonji/ARID domain-con 80.6 0.27 9.2E-06 34.5 -0.4 52 121-173 15-70 (92)
112 3shb_A E3 ubiquitin-protein li 80.5 0.37 1.2E-05 32.7 0.2 45 124-169 28-77 (77)
113 2xb1_A Pygopus homolog 2, B-ce 79.5 0.99 3.4E-05 32.3 2.3 48 123-170 4-62 (105)
114 1wen_A Inhibitor of growth fam 78.5 1.7 5.8E-05 28.8 3.1 45 121-170 15-66 (71)
115 2lv9_A Histone-lysine N-methyl 77.7 1 3.5E-05 31.8 1.9 44 123-168 29-75 (98)
116 1wee_A PHD finger family prote 77.3 0.35 1.2E-05 32.1 -0.7 45 123-168 17-65 (72)
117 3o70_A PHD finger protein 13; 75.4 0.85 2.9E-05 30.0 0.8 46 121-168 18-66 (68)
118 1weu_A Inhibitor of growth fam 75.2 1.7 5.9E-05 30.3 2.5 45 121-170 35-86 (91)
119 1wew_A DNA-binding family prot 71.8 2 6.8E-05 28.8 2.0 48 121-170 15-73 (78)
120 3m62_A Ubiquitin conjugation f 71.5 3.6 0.00012 40.3 4.5 47 122-172 891-938 (968)
121 2klu_A T-cell surface glycopro 70.4 7.2 0.00025 25.6 4.3 23 56-78 13-35 (70)
122 1z60_A TFIIH basal transcripti 68.9 3.7 0.00013 26.3 2.7 42 123-166 16-58 (59)
123 2yw8_A RUN and FYVE domain-con 68.6 4.1 0.00014 27.5 3.1 35 122-156 19-53 (82)
124 1z2q_A LM5-1; membrane protein 68.4 4.5 0.00015 27.4 3.3 35 122-156 21-55 (84)
125 1vfy_A Phosphatidylinositol-3- 68.3 4 0.00014 26.9 3.0 33 123-155 12-44 (73)
126 3c6w_A P28ING5, inhibitor of g 68.0 1.3 4.5E-05 28.2 0.4 42 122-168 9-57 (59)
127 3f6q_B LIM and senescent cell 67.5 3.3 0.00011 26.3 2.4 42 122-173 11-52 (72)
128 2vnf_A ING 4, P29ING4, inhibit 66.6 1.4 5E-05 28.1 0.4 42 122-168 10-58 (60)
129 1wfk_A Zinc finger, FYVE domai 65.7 4.5 0.00016 27.8 2.9 52 121-172 8-66 (88)
130 3t7l_A Zinc finger FYVE domain 65.3 3.9 0.00013 28.2 2.5 52 122-173 20-77 (90)
131 1x4i_A Inhibitor of growth pro 64.5 3.8 0.00013 27.0 2.2 47 122-171 6-57 (70)
132 1joc_A EEA1, early endosomal a 64.4 4.3 0.00015 29.8 2.7 35 122-156 69-103 (125)
133 3a1b_A DNA (cytosine-5)-methyl 64.4 6.1 0.00021 30.4 3.6 45 120-168 77-133 (159)
134 2gmg_A Hypothetical protein PF 63.9 1.6 5.4E-05 31.4 0.2 28 143-175 72-99 (105)
135 1zbd_B Rabphilin-3A; G protein 62.7 4.3 0.00015 30.3 2.5 49 120-168 53-106 (134)
136 1dvp_A HRS, hepatocyte growth 62.7 3.9 0.00013 32.7 2.4 35 122-156 161-195 (220)
137 2g6q_A Inhibitor of growth pro 62.6 2 6.8E-05 27.7 0.5 42 122-168 11-59 (62)
138 1x4u_A Zinc finger, FYVE domai 62.1 5.8 0.0002 26.8 2.9 34 122-155 14-47 (84)
139 1y02_A CARP2, FYVE-ring finger 61.7 1.1 3.9E-05 32.9 -0.9 49 122-170 19-67 (120)
140 1x4l_A Skeletal muscle LIM-pro 61.4 4.5 0.00015 25.9 2.1 40 122-171 5-46 (72)
141 2l2t_A Receptor tyrosine-prote 61.1 17 0.00059 21.7 4.5 7 52-58 12-18 (44)
142 2kwj_A Zinc finger protein DPF 61.0 0.8 2.8E-05 33.1 -1.8 47 124-171 60-110 (114)
143 1g47_A Pinch protein; LIM doma 61.0 9.5 0.00032 24.6 3.7 43 121-173 10-52 (77)
144 3kqi_A GRC5, PHD finger protei 60.7 2.2 7.6E-05 28.3 0.5 46 123-169 11-61 (75)
145 3zyq_A Hepatocyte growth facto 60.0 4.8 0.00016 32.5 2.5 35 122-156 164-198 (226)
146 3o7a_A PHD finger protein 13 v 60.0 1.9 6.6E-05 26.5 0.1 41 127-168 8-51 (52)
147 2cu8_A Cysteine-rich protein 2 59.0 7.7 0.00026 25.1 3.0 40 122-172 9-48 (76)
148 2ysm_A Myeloid/lymphoid or mix 58.3 1.7 5.7E-05 31.1 -0.5 45 124-169 56-104 (111)
149 2pv0_B DNA (cytosine-5)-methyl 57.8 7.7 0.00026 34.1 3.5 46 120-169 91-148 (386)
150 1x4k_A Skeletal muscle LIM-pro 57.7 7.7 0.00026 24.7 2.8 42 122-173 5-46 (72)
151 3mpx_A FYVE, rhogef and PH dom 57.4 2.2 7.5E-05 37.3 0.0 49 122-170 375-430 (434)
152 1wyh_A SLIM 2, skeletal muscle 56.5 8.2 0.00028 24.5 2.8 41 122-172 5-45 (72)
153 2l2t_A Receptor tyrosine-prote 56.2 26 0.00088 21.0 4.7 28 44-71 7-34 (44)
154 3ask_A E3 ubiquitin-protein li 55.8 3.3 0.00011 33.7 0.8 45 123-168 175-224 (226)
155 2knc_B Integrin beta-3; transm 55.1 10 0.00035 25.6 3.1 26 49-74 10-35 (79)
156 2co8_A NEDD9 interacting prote 54.5 11 0.00039 24.8 3.3 42 121-173 14-55 (82)
157 1zfo_A LAsp-1; LIM domain, zin 54.5 3 0.0001 22.9 0.2 28 123-153 4-31 (31)
158 2dj7_A Actin-binding LIM prote 54.0 10 0.00035 25.0 3.0 39 122-171 15-53 (80)
159 1x63_A Skeletal muscle LIM-pro 53.3 12 0.0004 24.5 3.2 42 122-173 15-56 (82)
160 1weo_A Cellulose synthase, cat 53.0 24 0.00084 24.4 4.7 50 122-171 16-69 (93)
161 1a7i_A QCRP2 (LIM1); LIM domai 52.9 3.3 0.00011 27.3 0.3 40 122-172 7-46 (81)
162 2d8x_A Protein pinch; LIM doma 51.8 9.1 0.00031 24.2 2.4 40 122-173 5-44 (70)
163 1x61_A Thyroid receptor intera 51.2 14 0.00048 23.4 3.2 40 122-171 5-44 (72)
164 1iml_A CRIP, cysteine rich int 51.1 6.8 0.00023 25.4 1.7 25 125-152 3-27 (76)
165 2ks1_B Epidermal growth factor 50.8 16 0.00055 21.8 3.1 16 52-67 13-28 (44)
166 1zza_A Stannin, AG8_1; helix, 50.1 49 0.0017 22.0 5.7 15 67-81 30-44 (90)
167 3kv5_D JMJC domain-containing 49.1 4.3 0.00015 36.7 0.5 47 122-169 37-88 (488)
168 2zet_C Melanophilin; complex, 47.6 9.8 0.00034 28.9 2.3 46 121-168 67-116 (153)
169 1x64_A Alpha-actinin-2 associa 47.0 21 0.00071 23.8 3.7 39 122-172 25-63 (89)
170 1x68_A FHL5 protein; four-and- 46.9 15 0.00053 23.6 2.9 40 122-171 5-46 (76)
171 2rgt_A Fusion of LIM/homeobox 46.7 9.6 0.00033 28.8 2.1 39 123-171 66-104 (169)
172 2jne_A Hypothetical protein YF 46.4 5.7 0.0002 28.1 0.7 40 123-171 33-72 (101)
173 2klu_A T-cell surface glycopro 45.3 34 0.0012 22.3 4.2 30 52-81 12-42 (70)
174 2cs3_A Protein C14ORF4, MY039 44.6 29 0.00098 23.7 3.9 38 122-160 15-53 (93)
175 1x62_A C-terminal LIM domain p 44.2 14 0.00047 24.1 2.3 38 122-171 15-52 (79)
176 2jp3_A FXYD domain-containing 44.1 30 0.001 22.6 3.8 22 49-70 15-36 (67)
177 2d8y_A Eplin protein; LIM doma 43.4 16 0.00053 24.5 2.6 40 122-172 15-54 (91)
178 2cor_A Pinch protein; LIM doma 42.8 20 0.00069 23.4 3.0 39 122-172 15-53 (79)
179 2l4z_A DNA endonuclease RBBP8, 42.6 22 0.00075 25.6 3.5 40 122-172 61-100 (123)
180 2jo1_A Phospholemman; FXYD1, N 42.4 62 0.0021 21.3 5.2 21 50-70 15-35 (72)
181 2k9j_B Integrin beta-3; transm 42.0 34 0.0012 20.2 3.6 27 49-75 9-35 (43)
182 2k21_A Potassium voltage-gated 41.3 68 0.0023 23.7 5.8 12 6-17 20-31 (138)
183 2zxe_G FXYD10, phospholemman-l 41.1 37 0.0013 22.6 4.0 26 46-71 14-39 (74)
184 2jmo_A Parkin; IBR, E3 ligase, 40.6 3.7 0.00013 27.6 -1.0 20 138-157 45-69 (80)
185 2dar_A PDZ and LIM domain prot 40.4 17 0.00057 24.3 2.4 39 122-172 25-63 (90)
186 2l3k_A Rhombotin-2, linker, LI 40.4 13 0.00045 26.5 1.9 29 124-154 10-38 (123)
187 3i2d_A E3 SUMO-protein ligase 39.7 32 0.0011 29.9 4.6 45 123-170 250-298 (371)
188 2k9y_A Ephrin type-A receptor 38.7 41 0.0014 19.1 3.6 9 51-59 14-22 (41)
189 2jo1_A Phospholemman; FXYD1, N 38.6 78 0.0027 20.8 5.2 32 49-80 18-49 (72)
190 2d8v_A Zinc finger FYVE domain 37.7 32 0.0011 22.4 3.2 32 120-156 6-38 (67)
191 2jrp_A Putative cytoplasmic pr 37.2 15 0.00051 25.0 1.6 40 123-171 3-42 (81)
192 2xjy_A Rhombotin-2; oncoprotei 36.6 13 0.00045 26.5 1.4 38 124-171 68-105 (131)
193 1v6g_A Actin binding LIM prote 36.4 29 0.00099 22.5 3.0 39 122-172 15-53 (81)
194 2pk7_A Uncharacterized protein 35.9 10 0.00034 25.0 0.6 18 154-171 2-19 (69)
195 2lcq_A Putative toxin VAPC6; P 35.7 11 0.00036 28.6 0.8 26 141-172 135-160 (165)
196 4fo9_A E3 SUMO-protein ligase 35.3 41 0.0014 29.1 4.5 46 123-171 216-265 (360)
197 2ct7_A Ring finger protein 31; 35.2 4.7 0.00016 27.4 -1.2 28 138-165 43-72 (86)
198 2jtn_A LIM domain-binding prot 35.0 14 0.00048 28.2 1.4 12 123-134 88-99 (182)
199 2o35_A Hypothetical protein DU 34.8 16 0.00055 25.9 1.5 13 147-159 42-54 (105)
200 3fyb_A Protein of unknown func 34.3 17 0.00057 25.7 1.5 13 147-159 41-53 (104)
201 2cup_A Skeletal muscle LIM-pro 33.8 16 0.00056 24.7 1.5 30 122-153 66-95 (101)
202 2rsd_A E3 SUMO-protein ligase 33.7 5 0.00017 26.0 -1.2 44 123-168 11-64 (68)
203 1rut_X Flinc4, fusion protein 32.2 24 0.00084 27.0 2.4 29 124-154 71-99 (188)
204 2egq_A FHL1 protein; LIM domai 32.0 32 0.0011 21.9 2.7 40 122-171 15-57 (77)
205 1nyp_A Pinch protein; LIM doma 31.7 19 0.00064 22.4 1.4 39 122-172 5-43 (66)
206 3kv4_A PHD finger protein 8; e 30.8 11 0.00039 33.6 0.2 45 125-169 7-56 (447)
207 2ehe_A Four and A half LIM dom 30.3 30 0.001 22.4 2.3 40 122-171 15-54 (82)
208 2jny_A Uncharacterized BCR; st 30.0 9.4 0.00032 25.0 -0.3 21 153-173 3-23 (67)
209 2kpi_A Uncharacterized protein 29.7 17 0.0006 22.7 0.9 26 123-148 11-38 (56)
210 1j2o_A FLIN2, fusion of rhombo 27.9 57 0.0019 22.7 3.6 33 123-157 31-64 (114)
211 1jb0_I Photosystem 1 reaction 27.1 89 0.003 18.0 3.6 25 45-69 9-33 (38)
212 1afo_A Glycophorin A; integral 26.9 97 0.0033 17.9 5.2 20 49-68 12-31 (40)
213 2d8z_A Four and A half LIM dom 26.7 49 0.0017 20.5 2.8 38 122-171 5-42 (70)
214 3mjh_B Early endosome antigen 26.6 14 0.00049 20.8 0.1 9 163-171 8-16 (34)
215 1wig_A KIAA1808 protein; LIM d 26.4 42 0.0014 21.4 2.4 38 122-171 5-42 (73)
216 3pwf_A Rubrerythrin; non heme 25.8 37 0.0013 26.0 2.4 25 137-168 137-161 (170)
217 2jp3_A FXYD domain-containing 25.2 79 0.0027 20.5 3.5 33 49-81 19-51 (67)
218 2iyb_E Testin, TESS, TES; LIM 24.4 39 0.0013 20.9 1.9 39 123-171 3-43 (65)
219 2dlo_A Thyroid receptor-intera 24.1 55 0.0019 21.0 2.7 38 122-171 15-52 (81)
220 1wd2_A Ariadne-1 protein homol 24.1 15 0.0005 23.3 -0.2 35 123-157 7-45 (60)
221 2wwb_C SEC61BETA, protein tran 23.9 72 0.0025 22.3 3.3 24 42-65 64-87 (96)
222 2jvx_A NF-kappa-B essential mo 23.1 24 0.00084 18.9 0.6 12 161-172 4-15 (28)
223 2jr6_A UPF0434 protein NMA0874 22.5 9.3 0.00032 25.0 -1.5 19 155-173 3-21 (68)
224 2vrw_B P95VAV, VAV1, proto-onc 22.2 45 0.0015 28.5 2.5 34 122-155 357-391 (406)
225 4ayb_P DNA-directed RNA polyme 22.2 47 0.0016 20.2 1.8 34 124-175 5-38 (48)
226 2fiy_A Protein FDHE homolog; F 21.9 7 0.00024 33.2 -2.7 48 121-169 181-231 (309)
227 2kog_A Vesicle-associated memb 20.9 93 0.0032 22.3 3.6 21 50-70 98-118 (119)
228 1x3h_A Leupaxin; paxillin fami 20.7 70 0.0024 20.3 2.7 39 122-172 15-53 (80)
229 2das_A Zinc finger MYM-type pr 20.5 1.2E+02 0.004 19.3 3.5 35 122-156 20-55 (62)
230 2hf1_A Tetraacyldisaccharide-1 20.4 9.2 0.00032 25.1 -1.8 19 155-173 3-21 (68)
231 2js4_A UPF0434 protein BB2007; 20.3 9.8 0.00033 25.1 -1.7 19 155-173 3-21 (70)
232 2akl_A PHNA-like protein PA012 20.0 36 0.0012 25.2 1.2 25 123-148 28-54 (138)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=130.77 Aligned_cols=84 Identities=24% Similarity=0.584 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCccHhhhhhcceeeeccccCCCCCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccc
Q 028342 88 NSSGSGSCSSGIKQKALKTFTVVKYSTELKLPGLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCR 167 (210)
Q Consensus 88 ~~~~~~~~~~gl~~~~i~~lp~~~y~~~~~~~~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR 167 (210)
..........|++++.++.+|.+.+.......+.+..|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||
T Consensus 6 ~~~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr 84 (91)
T 2l0b_A 6 HHHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84 (91)
T ss_dssp CCSCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTC
T ss_pred ccCCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcC
Confidence 3455667788999999999999999876655566789999999999999999999 999999999999999999999999
Q ss_pred ccccc
Q 028342 168 HCLIE 172 (210)
Q Consensus 168 ~~l~~ 172 (210)
..+..
T Consensus 85 ~~~~~ 89 (91)
T 2l0b_A 85 CMFPP 89 (91)
T ss_dssp CBSSC
T ss_pred ccCCC
Confidence 98764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=119.19 Aligned_cols=70 Identities=34% Similarity=0.824 Sum_probs=59.6
Q ss_pred hhhhhcceeeeccccCCCCCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 102 KALKTFTVVKYSTELKLPGLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 102 ~~i~~lp~~~y~~~~~~~~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
+.++.+|..+|..... ..++.+|+||+++|..++.++.++ |+|.||.+||+.|++.+.+||+||..+...
T Consensus 4 ~~i~~lp~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSC-SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccc-cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567788888876432 345679999999999999999998 999999999999999999999999988754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=4.5e-17 Score=105.72 Aligned_cols=51 Identities=49% Similarity=1.198 Sum_probs=46.9
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
++.+|+||+++|.+++.+..++.|+|.||.+||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457999999999999988888779999999999999999999999998874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=108.63 Aligned_cols=55 Identities=35% Similarity=0.945 Sum_probs=49.1
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCQ 175 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~~ 175 (210)
..+.+|+||+++|.+++.++.++ |+|.||.+||..|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34579999999999999999998 99999999999999999999999999875433
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=3.8e-16 Score=108.43 Aligned_cols=55 Identities=47% Similarity=0.982 Sum_probs=49.2
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCQ 175 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~~ 175 (210)
..+.+|+||+++|.+++.++.++ |+|.||.+||..|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34579999999999989999998 99999999999999999999999999886543
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=105.61 Aligned_cols=53 Identities=45% Similarity=0.960 Sum_probs=48.2
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
+.+..|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44579999999999888899998 999999999999999999999999988754
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=110.73 Aligned_cols=52 Identities=29% Similarity=0.754 Sum_probs=43.2
Q ss_pred CCccccccCcccC-----------CCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 122 DTECVICLSEFAP-----------GERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~-----------~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
++.|+||+++|.+ ++.++.++.|+|.||.+||++||+.+.+||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 4678888888853 455666767999999999999999999999999998744
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.55 E-value=3.4e-15 Score=96.66 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=43.3
Q ss_pred CCCccccccCcccCC-CceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 121 LDTECVICLSEFAPG-ERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 121 ~~~~CaICLeef~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
.+.+|+||+++|.++ +.++.++ |+|.||.+||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357999999999654 4567777 9999999999999999999999998764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.51 E-value=8.6e-15 Score=108.65 Aligned_cols=51 Identities=29% Similarity=0.740 Sum_probs=42.2
Q ss_pred CCccccccCcccCCC---------------ceEEcCCCCCccchHHHHHHHh-----cCCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGE---------------RVRLLPKCNHGFHVRCIDKWLR-----SNSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~---------------~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CPlCR~~l~~~ 173 (210)
+.+|+||+++|.++. .++.++ |+|+||.+||+.|+. .+.+||+||..+..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 469999999997643 345677 999999999999994 466899999988755
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.50 E-value=1.1e-14 Score=107.55 Aligned_cols=49 Identities=31% Similarity=0.657 Sum_probs=42.2
Q ss_pred CCccccccCcccCC---------------CceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPG---------------ERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~---------------~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
++.|+||+++|.+. ..++.++ |+|.||.+||+.||+.+.+||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 57899999999854 1356676 9999999999999999999999999864
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=101.57 Aligned_cols=54 Identities=28% Similarity=0.695 Sum_probs=45.2
Q ss_pred CCCCCccccccCcccCCCceEEcCCCC-----CccchHHHHHHHhcC--CCCccccccccccc
Q 028342 119 PGLDTECVICLSEFAPGERVRLLPKCN-----HGFHVRCIDKWLRSN--SSCPKCRHCLIESC 174 (210)
Q Consensus 119 ~~~~~~CaICLeef~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~--~~CPlCR~~l~~~~ 174 (210)
..++..|.||+++|.+++.+ ++| |+ |.||.+||++||+.+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34567999999999887776 588 96 999999999999765 48999999987543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=97.70 Aligned_cols=52 Identities=23% Similarity=0.614 Sum_probs=44.1
Q ss_pred CCCCccccccCcccCC----CceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 120 GLDTECVICLSEFAPG----ERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 120 ~~~~~CaICLeef~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
..+.+|+||++.|.+. ..+..++ |||.||.+||+.|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3457999999999753 4456777 99999999999999999999999998753
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.49 E-value=9.4e-15 Score=99.27 Aligned_cols=53 Identities=25% Similarity=0.673 Sum_probs=45.1
Q ss_pred CCCCccccccCcccC----CCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 120 GLDTECVICLSEFAP----GERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 120 ~~~~~CaICLeef~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
+++.+|+||++.|.+ ++.+..++ |||.||.+||+.|++.+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 345799999999875 35557777 999999999999999999999999988743
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=96.48 Aligned_cols=52 Identities=23% Similarity=0.614 Sum_probs=44.4
Q ss_pred CCCccccccCcccCC----CceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPG----ERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
++.+|+||++.+.+. +.+..++ |||.||.+||..|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 357999999999753 4556777 999999999999999999999999988754
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-14 Score=97.70 Aligned_cols=52 Identities=37% Similarity=0.859 Sum_probs=44.6
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCQK 176 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~~~ 176 (210)
..+..|+||++.+.+ ..++ |+|.||.+||..|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 345799999999886 5677 999999999999999999999999998865443
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.44 E-value=1.1e-13 Score=93.42 Aligned_cols=50 Identities=34% Similarity=0.826 Sum_probs=43.3
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
.+.+|+||++.+.+ .+..++ |||.||.+||..|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 45799999999874 346787 999999999999999999999999988743
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8e-14 Score=95.09 Aligned_cols=50 Identities=30% Similarity=0.540 Sum_probs=43.2
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
..+..|+||++.+.+ ...++ |+|.||.+||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345789999999876 45677 999999999999999999999999998753
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.42 E-value=1.3e-14 Score=108.93 Aligned_cols=50 Identities=30% Similarity=0.671 Sum_probs=0.5
Q ss_pred CCccccccCcccCC-------------Cc-eEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPG-------------ER-VRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~-------------~~-vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
++.|+||+++|.+. +. .+++..|+|.||.+||+.||+.+.+||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 47999999999752 22 2232349999999999999999999999999864
No 19
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=95.37 Aligned_cols=53 Identities=26% Similarity=0.637 Sum_probs=44.3
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC--CCCcccccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLIESCQ 175 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CPlCR~~l~~~~~ 175 (210)
+...+|+||.+.|..++... .|+|.||.+||.+||+.+ .+||+||.++.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 34589999999998765443 599999999999999887 789999998875544
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=92.51 Aligned_cols=50 Identities=24% Similarity=0.535 Sum_probs=42.3
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
.+..|+||++.|.+ .+.+++ |||.||..||..|++.+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34789999999986 333346 999999999999999999999999988754
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.2e-13 Score=94.61 Aligned_cols=53 Identities=30% Similarity=0.630 Sum_probs=45.1
Q ss_pred CCCCccccccCcccCCCc-eEEcCCCCCccchHHHHHHHhcC---CCCcccccccccc
Q 028342 120 GLDTECVICLSEFAPGER-VRLLPKCNHGFHVRCIDKWLRSN---SSCPKCRHCLIES 173 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~---~~CPlCR~~l~~~ 173 (210)
.+..+|+||++.|.+++. .+.++ |||.||.+||..|++.+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345799999999998775 67787 99999999999999876 6899999987643
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=90.71 Aligned_cols=51 Identities=22% Similarity=0.563 Sum_probs=41.7
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC--CCCccccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLIESC 174 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CPlCR~~l~~~~ 174 (210)
.+..|+||++.|.+ ...++.|||.||..||..|++.+ .+||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34789999999986 34566699999999999999865 58999999765443
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=91.64 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=41.5
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
....|+||++.|.+ ..+++ |||.||..||..|++...+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45789999999976 44677 9999999999999999999999999875
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=89.00 Aligned_cols=49 Identities=24% Similarity=0.607 Sum_probs=41.1
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh---cCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR---SNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CPlCR~~l~~~ 173 (210)
.+..|+||++.|.+ ...++ |||.||.+||..|++ .+..||+||..+...
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45799999999885 55667 999999999999996 455899999988643
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=87.63 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=40.4
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh-cCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CPlCR~~l~~~ 173 (210)
++..|+||++.+.+. ..++ |||.||..||..|++ .+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 457899999999863 2366 999999999999994 567899999988643
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=1.2e-12 Score=100.63 Aligned_cols=47 Identities=32% Similarity=0.859 Sum_probs=41.8
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
..|+||++.|.+ ...++ |||.||..||..|++.+.+||+||..+...
T Consensus 54 ~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 579999999976 56677 999999999999999999999999988644
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=1.5e-12 Score=97.99 Aligned_cols=54 Identities=22% Similarity=0.566 Sum_probs=45.9
Q ss_pred CCCccccccCcccCC----CceEEcCCCCCccchHHHHHHHhcCCCCcccccccccccc
Q 028342 121 LDTECVICLSEFAPG----ERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCQ 175 (210)
Q Consensus 121 ~~~~CaICLeef~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~~ 175 (210)
++.+|+||++.|.+. +.+..++ |||.||.+||+.|++.+.+||+||..+....-
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 457899999999753 5557777 99999999999999999999999999875544
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=3.4e-12 Score=92.85 Aligned_cols=47 Identities=32% Similarity=0.769 Sum_probs=40.7
Q ss_pred CCccccccCcccCCCceEE-cCCCCCccchHHHHHHHhcC-CCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRL-LPKCNHGFHVRCIDKWLRSN-SSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~-lp~C~H~FH~~CI~~Wl~~~-~~CPlCR~~l~~ 172 (210)
+..|+||++.|.+ ... ++ |||.||..||..|++.+ .+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3689999999975 445 76 99999999999999887 699999999864
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.24 E-value=7.3e-12 Score=86.55 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=41.2
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ...++ |||.||..||..|++. +.+||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35799999999976 45567 9999999999999987 7789999998764
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=9e-12 Score=86.86 Aligned_cols=48 Identities=31% Similarity=0.563 Sum_probs=41.1
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc------CCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS------NSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ...++ |+|.||..||..|++. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45799999999876 34677 9999999999999987 6689999998764
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.6e-12 Score=82.55 Aligned_cols=43 Identities=28% Similarity=0.653 Sum_probs=36.2
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh---cCCCCccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR---SNSSCPKC 166 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CPlC 166 (210)
+++..|+||++.|.+ ...++ |||.||.+||..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345799999999986 45567 999999999999998 45689998
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=3.2e-12 Score=96.21 Aligned_cols=53 Identities=25% Similarity=0.673 Sum_probs=44.7
Q ss_pred CCCCccccccCcccC----CCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 120 GLDTECVICLSEFAP----GERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 120 ~~~~~CaICLeef~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
+....|+||++.|.+ +.....++ |||.||..||+.|++.+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 345789999999875 23446676 999999999999999999999999998754
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.7e-12 Score=86.93 Aligned_cols=48 Identities=31% Similarity=0.650 Sum_probs=41.2
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc------CCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS------NSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ...++ |||.||.+||..|++. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45799999999976 34567 9999999999999987 6789999998874
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.21 E-value=8.4e-12 Score=90.25 Aligned_cols=47 Identities=30% Similarity=0.729 Sum_probs=40.9
Q ss_pred CCccccccCcccCCCceEEc-CCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLL-PKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
+..|+||++.|.+ ...+ + |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3689999999986 4444 6 99999999999999998999999998874
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-12 Score=88.63 Aligned_cols=48 Identities=29% Similarity=0.541 Sum_probs=40.9
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-------CCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-------NSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~~CPlCR~~l~~ 172 (210)
++..|+||++.|.+ ...++ |||.||.+||..|++. ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45799999999976 34577 9999999999999976 5689999998874
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=8.5e-12 Score=83.40 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=40.7
Q ss_pred CCccccccC-cccCCCce-EEcCCCCCccchHHHHHHHhc-CCCCcccccccccc
Q 028342 122 DTECVICLS-EFAPGERV-RLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLe-ef~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~~~ 173 (210)
+..|+||++ .|.+.... ..++ |||.||..||+.|+.. +..||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 77765543 3466 9999999999999765 46799999988643
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=79.91 Aligned_cols=42 Identities=29% Similarity=0.926 Sum_probs=35.1
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh---cCCCCccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR---SNSSCPKC 166 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CPlC 166 (210)
.+..|+||++.+.+. ..++ |||.||.+||..|++ .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457999999999863 4477 999999999999954 46689998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.18 E-value=1.1e-11 Score=91.14 Aligned_cols=49 Identities=27% Similarity=0.671 Sum_probs=41.8
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
+..|+||++.|.+ .+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4789999999975 344447 999999999999999999999999988753
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=91.52 Aligned_cols=47 Identities=28% Similarity=0.578 Sum_probs=40.5
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC-CCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CPlCR~~l~~ 172 (210)
+..|+||++.|.+ ...++ |||.||..||..|+..+. .||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3689999999985 55677 999999999999998655 89999998865
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=2.6e-11 Score=95.57 Aligned_cols=47 Identities=38% Similarity=0.745 Sum_probs=40.2
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIE 172 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~~ 172 (210)
..|+||++.|.+ .+..++ |||.||..||..|++. +..||+||..+..
T Consensus 55 ~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 589999999986 344447 9999999999999987 7789999998854
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.14 E-value=3.7e-11 Score=85.54 Aligned_cols=49 Identities=22% Similarity=0.592 Sum_probs=40.4
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC--CCCcccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLI 171 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CPlCR~~l~ 171 (210)
.++..|+||++.|.+ ...++.|||.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345799999999985 44565599999999999999754 58999999874
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=3.4e-11 Score=88.52 Aligned_cols=46 Identities=30% Similarity=0.637 Sum_probs=39.2
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC---CCccccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS---SCPKCRHCLIE 172 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---~CPlCR~~l~~ 172 (210)
..|+||++.|.+ ...++ |||.||..||..|+..+. .||+||..+..
T Consensus 22 ~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 689999999976 33467 999999999999998754 89999998774
No 43
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.06 E-value=7e-11 Score=79.14 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=41.0
Q ss_pred CCCccccccCcccCCCceEEc--CCCCCc-cchHHHHHHHhcCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLL--PKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~l--p~C~H~-FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
++.+|.||++.+.+ ...+ | |||. |+.+|+..|.+.+..||+||+.+...
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 34789999998775 3333 8 9999 79999999999888999999988644
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.06 E-value=7.9e-11 Score=87.91 Aligned_cols=48 Identities=35% Similarity=0.666 Sum_probs=41.1
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC-CCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ...++ |||.||..||..|++.+. +||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34799999999986 45577 999999999999998765 99999998875
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=9.7e-11 Score=86.97 Aligned_cols=48 Identities=31% Similarity=0.566 Sum_probs=41.0
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-CCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~~~ 173 (210)
+..|+||++.|.+ ...++ |||.||..||..|++. +.+||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 3689999999975 44577 9999999999999987 67899999988753
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.06 E-value=9.7e-11 Score=91.31 Aligned_cols=48 Identities=27% Similarity=0.569 Sum_probs=41.2
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC-CCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CPlCR~~l~~~ 173 (210)
...|+||++.|.+ ...++ |||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3689999999976 45577 999999999999998765 899999998754
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=2.1e-10 Score=79.94 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCccccccCcccCCCce-EEcCCCCCccchHHHHHHHhc-CCCCcccccccccccc
Q 028342 120 GLDTECVICLSEFAPGERV-RLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIESCQ 175 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~~~~~ 175 (210)
+++.+|+||++.+...+.. .-++ |||.||..|+..|+.. ...||+||..+....-
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3457999999998654332 2244 9999999999999854 5689999998875443
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=4.4e-11 Score=88.72 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=40.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~~ 172 (210)
+..|+||++.|.+ ...++ |||.||..||..|+.. +..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999875 45667 9999999999999976 5689999998864
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=2.4e-10 Score=101.52 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=42.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHh-cCCCCccccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIESC 174 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CPlCR~~l~~~~ 174 (210)
..+|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||..+....
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4699999999865 66788 999999999999998 6789999999887643
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=6.3e-11 Score=77.16 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=39.6
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 174 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~ 174 (210)
.++..|+||++.|.+ .+.++ |||.||..||..| ...||+||..+....
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 345789999999986 46688 9999999999885 678999999877543
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.99 E-value=1.5e-10 Score=77.23 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=40.9
Q ss_pred CCCccccccCcccCCCceEEcCCCCCc-cchHHHHHHHhcCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
.+.+|.||++.+.+. .+..+| |||. |+.+|+..|.+.+..||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 347999999987651 122348 9998 99999999998888999999998644
No 52
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.95 E-value=1.7e-10 Score=100.40 Aligned_cols=54 Identities=28% Similarity=0.625 Sum_probs=42.2
Q ss_pred CCCCccccccCcccCCCceE----EcCCCCCccchHHHHHHHhcC-----------CCCcccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVR----LLPKCNHGFHVRCIDKWLRSN-----------SSCPKCRHCLIES 173 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr----~lp~C~H~FH~~CI~~Wl~~~-----------~~CPlCR~~l~~~ 173 (210)
+...+|+||++.+.+++.+- ..++|+|.||..|+.+||++. .+||+||.++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45689999999998844332 123699999999999999752 4699999988754
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=88.17 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=40.4
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC-CCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ...++ |||.||..||..|++... +||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45789999999986 34576 999999999999998665 89999998643
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.92 E-value=1.2e-09 Score=77.13 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=42.6
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ..+++ |||.|...||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 35789999999987 66787 99999999999999988999999988764
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=6.6e-10 Score=76.33 Aligned_cols=46 Identities=22% Similarity=0.604 Sum_probs=39.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCc-cchHHHHHHHhcCCCCcccccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESCQ 175 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CPlCR~~l~~~~~ 175 (210)
+..|+||++.+.+ ...+| |||. |+..|+..| ..||+||..+.....
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFKQK 70 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEEEE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCcEE
Confidence 3689999999876 66778 9999 999999999 889999998876543
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.87 E-value=1.2e-09 Score=79.50 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=42.5
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 35799999999987 66677 99999999999999988899999998764
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.86 E-value=1.8e-09 Score=78.36 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=42.3
Q ss_pred CCCccccccCcccCCCceEEcCCCC-CccchHHHHHHHhcCCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCN-HGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
.+..|+||++.|.+ ..+++ || |.|+..||..|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34789999999987 56677 99 999999999999988899999998764
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=5.6e-10 Score=83.10 Aligned_cols=44 Identities=23% Similarity=0.512 Sum_probs=38.0
Q ss_pred CCccccccCcccCCCceEEc-CCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLL-PKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+||++.|.+ ...+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4789999999975 3445 6 999999999999988 78999999874
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=4.5e-09 Score=71.12 Aligned_cols=49 Identities=31% Similarity=0.648 Sum_probs=40.5
Q ss_pred CCCccccccCcccCCCceEEcCCCCCc-cchHHHHHHHhcCCCCcccccccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESCQKI 177 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CPlCR~~l~~~~~~~ 177 (210)
++..|.||++.+.+ +..+| |||. |+..|+.. ...||+||..+.....-+
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEEee
Confidence 45799999998765 77888 9999 99999984 578999999988755443
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.80 E-value=3.2e-09 Score=70.28 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=37.0
Q ss_pred CCCCccccccCcccCCCceEEcCCCC--C---ccchHHHHHHHhc--CCCCcccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCN--H---GFHVRCIDKWLRS--NSSCPKCRHCLI 171 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~--H---~FH~~CI~~Wl~~--~~~CPlCR~~l~ 171 (210)
+++..|.||+++. ++.+ ++| |. | .||.+|++.|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457999999983 3344 577 65 4 9999999999965 568999998765
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.74 E-value=4.6e-09 Score=82.84 Aligned_cols=49 Identities=35% Similarity=0.659 Sum_probs=41.2
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC-CCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CPlCR~~l~~~ 173 (210)
+...|+||++.|.+ ...++ |||.|+..||..|++.+. +||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34799999999986 45577 999999999999997654 899999988653
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=7.3e-09 Score=71.10 Aligned_cols=44 Identities=23% Similarity=0.603 Sum_probs=36.6
Q ss_pred CccccccCcccCCCceEEcCCCCCc-cchHHHHHHHhcCCCCccccccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESC 174 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CPlCR~~l~~~~ 174 (210)
..|+||++.+.+ ...+| |||. |+.+|+.. ...||+||..+....
T Consensus 26 ~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 589999999876 55678 9999 99999964 478999999887543
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=1e-08 Score=73.57 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=37.5
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC------CCCcc--cccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN------SSCPK--CRHC 169 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~------~~CPl--CR~~ 169 (210)
.+..|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34789999999986 44553499999999999999754 48999 9855
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=1.9e-08 Score=84.31 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=40.9
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC-CCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN-SSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~~CPlCR~~l~~ 172 (210)
....|+||++.|.+ ..+++ |||.|+..||..|+..+ .+||+||..+..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 35789999999987 66788 99999999999999764 459999998853
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=1.2e-08 Score=70.97 Aligned_cols=48 Identities=25% Similarity=0.570 Sum_probs=40.4
Q ss_pred CccccccCcccCCCceEEcCCCCCc-cchHHHHHHHhcCCCCccccccccccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESCQKIV 178 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CPlCR~~l~~~~~~~~ 178 (210)
..|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+.....-+.
T Consensus 19 ~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp TBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBC
T ss_pred CEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEe
Confidence 689999998776 67788 9999 999999987 399999999887655443
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.2e-08 Score=72.92 Aligned_cols=47 Identities=23% Similarity=0.663 Sum_probs=39.6
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC--------CCCcc--cccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN--------SSCPK--CRHC 169 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--------~~CPl--CR~~ 169 (210)
..+|+||++++...+.+.+.+ |||.|+.+|+..++..+ ..||. ||..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468999999998777776666 99999999999999641 36999 9987
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.45 E-value=1.3e-07 Score=75.71 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=40.6
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC-CCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN-SSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~~CPlCR~~l~~ 172 (210)
....|+||++.|.+ ..+++ |||.|...||..|+..+ .+||+||..+..
T Consensus 105 ~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45789999999986 55677 99999999999999764 469999988754
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.43 E-value=1e-07 Score=63.07 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=40.3
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
..|+||++.|.+ .+ +++.|||+|..+||.+|++.+.+||+++..|...
T Consensus 4 ~~CpIs~~~m~d--PV-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR--PV-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS--EE-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC--CE-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 579999999985 34 4423999999999999999888999999988643
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.39 E-value=7.8e-08 Score=84.35 Aligned_cols=45 Identities=24% Similarity=0.699 Sum_probs=39.0
Q ss_pred CCccccccCcccCCCceEEcCCCCCc-cchHHHHHHHhcCCCCccccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESC 174 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CPlCR~~l~~~~ 174 (210)
+..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+....
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 4789999999876 66778 9999 999999998 78999999987553
No 70
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.26 E-value=9e-07 Score=73.81 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=41.8
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC--CCccccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS--SCPKCRHCLIESC 174 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--~CPlCR~~l~~~~ 174 (210)
.-.+|+||.+-.-.| ..++.|+|.||.+|+..|++.+. +||.|+..+....
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 457999999988765 34556999999999999998765 8999999887543
No 71
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.5e-07 Score=76.37 Aligned_cols=47 Identities=23% Similarity=0.571 Sum_probs=38.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC--CCCcc--cccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN--SSCPK--CRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CPl--CR~~l~ 171 (210)
+-.|+||++.|.+ .|+... |||.|+..||..|++.+ ..||+ ||..+.
T Consensus 181 el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4689999999974 455455 99999999999999764 36999 998765
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.95 E-value=5.6e-06 Score=59.66 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=39.2
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-CCCCcccccccccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIESCQ 175 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~~~~~ 175 (210)
.|.+|--.+. .-.|..| |+|+|+.+|+..|.+. .++||.||..+..-+.
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4778865554 4568899 9999999999999865 5689999998876554
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.75 E-value=0.0018 Score=45.98 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=38.9
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCQ 175 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~~ 175 (210)
..|-.|+-+++. ++.. ..|.++..|+..-|.....||+|...|.++-.
T Consensus 29 ~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 29 QFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 579999977554 4442 45999999999999999999999999986644
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.67 E-value=0.0017 Score=43.32 Aligned_cols=47 Identities=26% Similarity=0.472 Sum_probs=35.4
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRHCL 170 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l 170 (210)
..+..|.||.+ +..+.....|...||..|++..|.... .||.|+...
T Consensus 10 ~~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34578999964 344666777999999999998886543 699996543
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.43 E-value=0.034 Score=38.61 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=24.5
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHH
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
..++.|.||- .+..++... ..-|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 3568999994 444444332 2239999999999996
No 76
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.85 E-value=0.028 Score=44.38 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=35.0
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCcccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRHCLI 171 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l~ 171 (210)
+++.|.+|.+. ..+..+..|.-.||..|++.-+.... .||.|+..-.
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45789999743 44667778999999999987765422 6999986543
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.84 E-value=0.041 Score=38.77 Aligned_cols=34 Identities=15% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
+..|.||++.+.......-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998754434444465 9999999999983
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.80 E-value=0.049 Score=35.33 Aligned_cols=45 Identities=27% Similarity=0.724 Sum_probs=33.4
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC----CCCccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN----SSCPKCRH 168 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CPlCR~ 168 (210)
..+..|.||.+ +..+.....|...||..|++.-+... -.||.|+.
T Consensus 9 ~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34578999976 24566677799999999999865332 26999964
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.33 E-value=0.026 Score=36.82 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=37.5
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh-----cCCCCccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-----SNSSCPKCRH 168 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CPlCR~ 168 (210)
+++..|+||...+.++...+....|..=||..|+..-.. .+-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345789999998876677777778999999999876432 2346999965
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.73 E-value=0.015 Score=37.56 Aligned_cols=50 Identities=20% Similarity=0.626 Sum_probs=35.7
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC----CCCccccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN----SSCPKCRHCLIESC 174 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CPlCR~~l~~~~ 174 (210)
++..|.||... ..+.....|.-.||..|++.=+... -.||.|+.....+.
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~ 57 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKE 57 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTT
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchh
Confidence 45789999763 3455666799999999999655432 25999977655443
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.63 E-value=0.052 Score=43.13 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=37.1
Q ss_pred CCccccccCcccCCCc---eEEcCCCCCccchHHHHHH------Hh-----cCCCCcccccc
Q 028342 122 DTECVICLSEFAPGER---VRLLPKCNHGFHVRCIDKW------LR-----SNSSCPKCRHC 169 (210)
Q Consensus 122 ~~~CaICLeef~~~~~---vr~lp~C~H~FH~~CI~~W------l~-----~~~~CPlCR~~ 169 (210)
+..|+||...|.+++. ++.+..|..=||..|+..= +. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 3579999999998774 7788889999999997532 11 15689999874
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=92.62 E-value=0.032 Score=44.90 Aligned_cols=47 Identities=28% Similarity=0.482 Sum_probs=35.5
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRHCL 170 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l 170 (210)
.+++.|.+|.+ +..+..+..|...||..|++..+.... .||.|+..-
T Consensus 5 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQN----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCC----CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34578999973 345777788999999999988765432 699997643
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=92.49 E-value=0.03 Score=36.37 Aligned_cols=47 Identities=21% Similarity=0.548 Sum_probs=33.4
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRHCL 170 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l 170 (210)
.++..|.||.+ +..+.....|...||..|+..-+.... .||.|+...
T Consensus 7 ~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34578999975 234556667999999999986554322 599997643
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.95 E-value=0.047 Score=36.69 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=36.7
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc----CCCCcccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS----NSSCPKCRHCLI 171 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~~CPlCR~~l~ 171 (210)
+...|.||.... +++.++....|.--||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345799997764 35566777789999999999876532 236999977654
No 85
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=91.09 E-value=0.78 Score=28.99 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=24.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 028342 46 FDSNVLMVLSVLLCALICAIGLASLVKCSLRCSR 79 (210)
Q Consensus 46 ~~~~~iiil~il~~~li~~l~l~~i~~~~~r~~~ 79 (210)
..+.+++++++++..+++++++.++.+|-+.+++
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 4457888888888888888777777766554433
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.53 E-value=0.051 Score=35.76 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=32.8
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRH 168 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~ 168 (210)
.++..|.||.+. ..+.....|...||..|+..-+.... .||.|+.
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356899999853 34566667999999999986553322 5999954
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.84 E-value=0.15 Score=35.70 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=34.4
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRHCL 170 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l 170 (210)
+++..|.+|.+. + .+.....|.-.||..|++.=+.... .||.|+...
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 456799999853 3 4556667999999999977664422 699997643
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.55 E-value=0.053 Score=34.43 Aligned_cols=45 Identities=24% Similarity=0.760 Sum_probs=32.0
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRH 168 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~ 168 (210)
.++..|.||.+. ..+.....|...||..|++.-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345789999863 34556667999999999986554322 5888853
No 89
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=89.23 E-value=1.7 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 028342 47 DSNVLMVLSVLLCALICAIGLASLVKCSLRCSR 79 (210)
Q Consensus 47 ~~~~iiil~il~~~li~~l~l~~i~~~~~r~~~ 79 (210)
.+.+++++++++.++++++++.++.+|-+.+++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 456777888888877777777777766554433
No 90
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=88.88 E-value=0.18 Score=33.77 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=34.5
Q ss_pred CCCCccccccCcc-cCCCceEEcCCCCCccchHHHHHHHhcC--CCCccccc
Q 028342 120 GLDTECVICLSEF-APGERVRLLPKCNHGFHVRCIDKWLRSN--SSCPKCRH 168 (210)
Q Consensus 120 ~~~~~CaICLeef-~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CPlCR~ 168 (210)
.++..|.||.+.- .+++.+.....|.-.||..|+..-..-. =.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3457999998653 3455677777899999999998543211 25888854
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.88 E-value=0.39 Score=32.49 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=35.7
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh-----cCCCCccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-----SNSSCPKCRHCL 170 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CPlCR~~l 170 (210)
....| ||...+.++...+....|..=||..|+..--. ..-.||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 99988875666777778999999999864321 234799998654
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.25 E-value=0.42 Score=31.33 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=29.1
Q ss_pred CCccccccCcccCCCceEEcC-CCCCccchHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLP-KCNHGFHVRCIDK 155 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp-~C~H~FH~~CI~~ 155 (210)
...|.+|...+.+++..+... .|.-=||..|+..
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 468999999998888888887 8999999999754
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.01 E-value=0.3 Score=30.03 Aligned_cols=44 Identities=27% Similarity=0.726 Sum_probs=30.6
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRH 168 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~ 168 (210)
.|.||...-. ++.+.....|...||..|++.=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888976533 345566677999999999976443322 5999964
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.88 E-value=0.67 Score=35.21 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=34.5
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh---------c--CCCCcccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR---------S--NSSCPKCRHC 169 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~---------~--~~~CPlCR~~ 169 (210)
+.++.|.||-+ |..+.....|-.+||..||+.=+. . .=.||.|+..
T Consensus 61 g~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 45689999964 455667777999999999997652 1 2269999754
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=87.85 E-value=0.16 Score=35.32 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=35.1
Q ss_pred CCCCccccccCcc-cCCCceEEcCCCCCccchHHHHHHHhc--CCCCcccccc
Q 028342 120 GLDTECVICLSEF-APGERVRLLPKCNHGFHVRCIDKWLRS--NSSCPKCRHC 169 (210)
Q Consensus 120 ~~~~~CaICLeef-~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~~CPlCR~~ 169 (210)
+++..|.||.+.- .+++.+.....|.-.||..|+..-+.- .-.||.|+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4567999998653 344467777789999999999864322 2259999654
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.79 E-value=0.17 Score=36.75 Aligned_cols=46 Identities=26% Similarity=0.598 Sum_probs=33.0
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC----CCCccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN----SSCPKCRH 168 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CPlCR~ 168 (210)
..|.||.+.-.+++.+.....|...||..|++.-|..- =.||.||.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36889986533445566777799999999998765442 26999974
No 97
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=86.90 E-value=0.16 Score=39.43 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=35.7
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh-----cCCCCcccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-----SNSSCPKCRHC 169 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CPlCR~~ 169 (210)
+...| +|.....++...+.+..|.--||..|+..--. ..-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34689 99988776666777878999999999964321 23479999753
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.60 E-value=0.36 Score=31.30 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=35.8
Q ss_pred CCCCccccccCcc-cCCCceEEcCCCCCccchHHHHHHHhc-------CCCCccccccc
Q 028342 120 GLDTECVICLSEF-APGERVRLLPKCNHGFHVRCIDKWLRS-------NSSCPKCRHCL 170 (210)
Q Consensus 120 ~~~~~CaICLeef-~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~~CPlCR~~l 170 (210)
+++..|.||.... .++..+.....|.-.||..|+..=+.. .-.|+.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4567999998764 334566677789999999998864421 22699886543
No 99
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=86.30 E-value=0.94 Score=33.80 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=34.8
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHH------hc-----CCCCcccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWL------RS-----NSSCPKCRHCLI 171 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl------~~-----~~~CPlCR~~l~ 171 (210)
++++.|.||-+ |.++.....|-.+||.+||+.-+ +. .=.|++|+....
T Consensus 55 g~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 55 GMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp SCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 45678999974 45566777899999999999752 21 127999976543
No 100
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.14 E-value=0.32 Score=30.28 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=32.8
Q ss_pred ccccccCcccCCCceEEcC-CCCCccchHHHHHHH----hcCCCCcccc
Q 028342 124 ECVICLSEFAPGERVRLLP-KCNHGFHVRCIDKWL----RSNSSCPKCR 167 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp-~C~H~FH~~CI~~Wl----~~~~~CPlCR 167 (210)
.|.+|...+.+++..+... .|.-=||..|+..-. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5789999887777777777 699999999976432 2455799885
No 101
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=86.07 E-value=2 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028342 46 FDSNVLMVLSVLLCALICAIGLASLVKCSLR 76 (210)
Q Consensus 46 ~~~~~iiil~il~~~li~~l~l~~i~~~~~r 76 (210)
-.+.++++++++...++++++...+.+|-+.
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLAMWKVGFF 37 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3457777888888877777777777766443
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.91 E-value=0.16 Score=35.37 Aligned_cols=51 Identities=18% Similarity=0.479 Sum_probs=36.6
Q ss_pred CCccccccCcccC-CCceEEcCCCCCccchHHHHHHHhc--------CCCCccccccccc
Q 028342 122 DTECVICLSEFAP-GERVRLLPKCNHGFHVRCIDKWLRS--------NSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~-~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~~CPlCR~~l~~ 172 (210)
+..|.||...-.. +..+.....|...||..|++.=|.. .=.|+.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4689999875332 3567777789999999999876531 1269999765543
No 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=85.53 E-value=0.19 Score=39.82 Aligned_cols=45 Identities=27% Similarity=0.551 Sum_probs=32.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC----CCCccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN----SSCPKCRHCL 170 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CPlCR~~l 170 (210)
++.|.+|.+. | .+..+..|...||..|++.=+... -.||.|+..-
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4689999743 3 455566799999999997655332 2699998663
No 104
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.67 E-value=0.39 Score=34.49 Aligned_cols=47 Identities=21% Similarity=0.524 Sum_probs=31.9
Q ss_pred CCCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc----CCCCcccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS----NSSCPKCR 167 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~~CPlCR 167 (210)
.+++.|.||.+.=+. +.+.....|+..||..|++..+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456899999765322 223455679999999999988642 22477664
No 105
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=84.59 E-value=0.9 Score=32.78 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=33.1
Q ss_pred CCCCccccccCcccCCCceEEcC--CCCCccchHHHHHHHhcCC----CCcccccccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLP--KCNHGFHVRCIDKWLRSNS----SCPKCRHCLIES 173 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp--~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l~~~ 173 (210)
.+++.|.+|.+ +..+.... .|...||..|+. |.... .||.|+..+-.+
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 45688999973 34566665 599999999998 54422 588876554433
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.58 E-value=1 Score=32.39 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=31.0
Q ss_pred CCccccccCcc-----cCCCceEEcCCCCCccchHHHHHH------Hhc-CCCCcccc
Q 028342 122 DTECVICLSEF-----APGERVRLLPKCNHGFHVRCIDKW------LRS-NSSCPKCR 167 (210)
Q Consensus 122 ~~~CaICLeef-----~~~~~vr~lp~C~H~FH~~CI~~W------l~~-~~~CPlCR 167 (210)
...|.+|+..= .+++.+.....|+..||..|++.+ +.. .=.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46899998753 133456677779999999999642 222 22577775
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.30 E-value=0.3 Score=33.18 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=31.6
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-----CCCCccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-----NSSCPKCRH 168 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~~CPlCR~ 168 (210)
..|.||...- +++.+.....|...||..|++.=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4788997642 34556677789999999999854432 125888864
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=82.96 E-value=0.36 Score=32.09 Aligned_cols=44 Identities=30% Similarity=0.766 Sum_probs=30.2
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-----CCCCccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-----NSSCPKCRH 168 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~~CPlCR~ 168 (210)
.|.||... .+++.+.....|...||..|++.=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~-~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGR-QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCC-SCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCc-CCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56777654 234556677789999999999854432 126888864
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.63 E-value=0.46 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=25.4
Q ss_pred CccccccCccc------CCCceEEcCCCCCccchHHHHHH
Q 028342 123 TECVICLSEFA------PGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 123 ~~CaICLeef~------~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
+.|.||++.-. +++.++....|+..||..|++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57999987541 23456666679999999999865
No 110
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.79 E-value=0.93 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHH---------hcCCCCcccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWL---------RSNSSCPKCRHC 169 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl---------~~~~~CPlCR~~ 169 (210)
...| ||...+. ++..+....|..=||..|+..-. ..+-.||.|+..
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3567 8988765 44566666799999999985322 235679999653
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.64 E-value=0.27 Score=34.48 Aligned_cols=52 Identities=19% Similarity=0.457 Sum_probs=35.9
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l~~~ 173 (210)
++..|.||...-. .+.+.....|...||..|++.=|.... .||.|+..-..+
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~~ 70 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 70 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHSC
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccccC
Confidence 4568999987643 345667778999999999985443322 599997654333
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=80.51 E-value=0.37 Score=32.75 Aligned_cols=45 Identities=29% Similarity=0.685 Sum_probs=30.0
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC-----CCCcccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN-----SSCPKCRHC 169 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-----~~CPlCR~~ 169 (210)
.|.||...- +++.+.....|...||..|++.-|... =.||.|+.+
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 566775543 335566677799999999999765432 269998753
No 113
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=79.48 E-value=0.99 Score=32.30 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=36.3
Q ss_pred CccccccCcccCCCceEEcC-CCCCccchHHHHHHHh----------cCCCCccccccc
Q 028342 123 TECVICLSEFAPGERVRLLP-KCNHGFHVRCIDKWLR----------SNSSCPKCRHCL 170 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp-~C~H~FH~~CI~~Wl~----------~~~~CPlCR~~l 170 (210)
..|.||...+.+++..+..- .|.-=||.+|+..=-. .+-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 57999999998777777775 7999999999753310 234799997653
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.55 E-value=1.7 Score=28.82 Aligned_cols=45 Identities=27% Similarity=0.580 Sum_probs=30.0
Q ss_pred CCCccccccCcccCCCceEEcCC--CC-CccchHHHHHHHhc----CCCCccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPK--CN-HGFHVRCIDKWLRS----NSSCPKCRHCL 170 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CPlCR~~l 170 (210)
+...| ||.... .+ .++.... |. .-||..|+. |.. +-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~-~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS-CS-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC-CC-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34678 897753 23 4556666 66 689999998 433 22699997644
No 115
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.67 E-value=1 Score=31.76 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=31.1
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhc---CCCCccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS---NSSCPKCRH 168 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~~~CPlCR~ 168 (210)
..| ||-....+ ..++....|.--||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDD-GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCS-SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCC-CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 467 88766554 455667779999999998763322 236999974
No 116
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.34 E-value=0.35 Score=32.12 Aligned_cols=45 Identities=29% Similarity=0.495 Sum_probs=33.3
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHH----hcCCCCccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWL----RSNSSCPKCRH 168 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl----~~~~~CPlCR~ 168 (210)
..| ||.....+++..+....|..=||..|+..-- ..+-.||.|+.
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 568 7988776666677777899999999987542 12346999965
No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=75.42 E-value=0.85 Score=30.04 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=32.2
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh---cCCCCccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR---SNSSCPKCRH 168 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CPlCR~ 168 (210)
+...| ||..... ++..+....|.-=||..|+..--. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34678 9987665 555667777999999999875321 2336888864
No 118
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.23 E-value=1.7 Score=30.33 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=29.4
Q ss_pred CCCccccccCcccCCCceEEcCC--CC-CccchHHHHHHHhc----CCCCccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPK--CN-HGFHVRCIDKWLRS----NSSCPKCRHCL 170 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CPlCR~~l 170 (210)
+...| ||..... + .++.... |. .-||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34678 9987643 3 3455555 55 679999998 333 23699997643
No 119
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.76 E-value=2 Score=28.83 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=32.8
Q ss_pred CCCccccccCcccCCCceEEcC--CCCCccchHHHHHHHh---------cCCCCccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLP--KCNHGFHVRCIDKWLR---------SNSSCPKCRHCL 170 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp--~C~H~FH~~CI~~Wl~---------~~~~CPlCR~~l 170 (210)
....| ||-..... ...+... .|..=||..|+..--. .+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34678 89877444 4555666 7999999999864322 244799997643
No 120
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=71.49 E-value=3.6 Score=40.31 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=40.4
Q ss_pred CCccccccCcccCCCceEEcCCCC-CccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCN-HGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
.-.|+|-++-+.+ ..++| -| +.|-..+|..||.++.+||.=|..|..
T Consensus 891 ~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 891 EFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4679999999887 66777 76 689999999999999999999988864
No 121
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=70.36 E-value=7.2 Score=25.57 Aligned_cols=23 Identities=17% Similarity=-0.074 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 028342 56 VLLCALICAIGLASLVKCSLRCS 78 (210)
Q Consensus 56 il~~~li~~l~l~~i~~~~~r~~ 78 (210)
++..++.++++..+.+.|+.+++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHH
Confidence 44444444444444444333333
No 122
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=68.93 E-value=3.7 Score=26.28 Aligned_cols=42 Identities=33% Similarity=0.689 Sum_probs=29.9
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHh-cCCCCccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-SNSSCPKC 166 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CPlC 166 (210)
..|--|...|.+. ..-..++|++.|+.+| |..+- .=.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4699999998642 2355788999999999 33332 23379988
No 123
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=68.65 E-value=4.1 Score=27.52 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=26.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
...|.+|...|.--..--....||.+|+..|-...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 46899999999754333345579999999997654
No 124
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=68.44 E-value=4.5 Score=27.44 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=26.5
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
...|.+|...|.--..--....||++|+..|-...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 47899999999754433445579999999997654
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.33 E-value=4 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.5
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHH
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDK 155 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~ 155 (210)
..|.+|...|.--..--....||.+|+..|-..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999875333334457999999999543
No 126
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=68.04 E-value=1.3 Score=28.24 Aligned_cols=42 Identities=31% Similarity=0.691 Sum_probs=28.3
Q ss_pred CCccccccCcccCCCceEEcCC--CC-CccchHHHHHHHhc----CCCCccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPK--CN-HGFHVRCIDKWLRS----NSSCPKCRH 168 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CPlCR~ 168 (210)
...| ||.... .+ .++.... |. .-||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4567 997753 33 4666666 66 699999998 433 226999864
No 127
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=67.53 E-value=3.3 Score=26.34 Aligned_cols=42 Identities=26% Similarity=0.616 Sum_probs=31.6
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
...|+.|-..+..++.+... =+..||.+|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 46899999998877765432 5678998886 578888887654
No 128
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=66.56 E-value=1.4 Score=28.08 Aligned_cols=42 Identities=26% Similarity=0.625 Sum_probs=27.7
Q ss_pred CCccccccCcccCCCceEEcCC--CC-CccchHHHHHHHhcC----CCCccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPK--CN-HGFHVRCIDKWLRSN----SSCPKCRH 168 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~~----~~CPlCR~ 168 (210)
...| ||.... . ..++.... |. .-||..|+. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~-~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-Y-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-C-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-C-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4567 897753 2 34566666 55 689999998 4332 26998854
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.69 E-value=4.5 Score=27.80 Aligned_cols=52 Identities=17% Similarity=0.421 Sum_probs=35.0
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHh-------cCCCCccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-------SNSSCPKCRHCLIE 172 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-------~~~~CPlCR~~l~~ 172 (210)
+...|.+|...|.--..--....||++|+..|-...+. ....|-.|-..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 34689999999985433344557999999999766431 12357777555543
No 130
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.29 E-value=3.9 Score=28.20 Aligned_cols=52 Identities=17% Similarity=0.408 Sum_probs=35.4
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc------CCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS------NSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~~CPlCR~~l~~~ 173 (210)
...|.+|...|.--..--....||++|+..|-..+... ...|-.|-..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKA 77 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHH
Confidence 36899999999754333445579999999998776421 23577775555433
No 131
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.51 E-value=3.8 Score=27.00 Aligned_cols=47 Identities=21% Similarity=0.419 Sum_probs=29.0
Q ss_pred CCccccccCcccCCCceEEcCCCC---CccchHHHHHHHh--cCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCN---HGFHVRCIDKWLR--SNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~---H~FH~~CI~~Wl~--~~~~CPlCR~~l~ 171 (210)
...| ||... ..+ .++....|. .-||..|+..--. .+-.||.|+....
T Consensus 6 ~~yC-~C~~~-~~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 6 SGYC-ICNQV-SYG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCCS-TTSCC-CCS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CeEE-EcCCC-CCC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcccc
Confidence 3566 58765 334 455555553 6899999983211 1236999977654
No 132
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.37 E-value=4.3 Score=29.79 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=25.5
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
...|.+|...|.--..--....||++|+..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 36899999999754333345579999999995543
No 133
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=64.37 E-value=6.1 Score=30.42 Aligned_cols=45 Identities=31% Similarity=0.719 Sum_probs=33.4
Q ss_pred CCCCccccccCcccCCCceEEcC--CCCCccchHHHHHHHhc----------CCCCccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLP--KCNHGFHVRCIDKWLRS----------NSSCPKCRH 168 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp--~C~H~FH~~CI~~Wl~~----------~~~CPlCR~ 168 (210)
+.+..|.||-+ |..+.... .|...|+.+||+.++.. .=+|=+|.-
T Consensus 77 G~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 45689999974 55677766 69999999999999833 115877753
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=63.87 E-value=1.6 Score=31.41 Aligned_cols=28 Identities=36% Similarity=0.665 Sum_probs=18.5
Q ss_pred CCCCccchHHHHHHHhcCCCCcccccccccccc
Q 028342 143 KCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCQ 175 (210)
Q Consensus 143 ~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~~ 175 (210)
+||+.|. .=+.....||.|+..-++.+.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCcc
Confidence 5999981 112334579999988776543
No 135
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.66 E-value=4.3 Score=30.26 Aligned_cols=49 Identities=14% Similarity=0.371 Sum_probs=31.6
Q ss_pred CCCCccccccCccc-CCCceEEcCCCCCccchHHHHHHHh-cC-C--CCccccc
Q 028342 120 GLDTECVICLSEFA-PGERVRLLPKCNHGFHVRCIDKWLR-SN-S--SCPKCRH 168 (210)
Q Consensus 120 ~~~~~CaICLeef~-~~~~vr~lp~C~H~FH~~CI~~Wl~-~~-~--~CPlCR~ 168 (210)
..+..|++|...|- -+..-+....|+|.++..|=..--. .+ . .|=+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 34589999999993 3334466667999999988432101 11 1 3888855
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.66 E-value=3.9 Score=32.69 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=25.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
+..|.+|...|.--..--.+..||++|+..|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999999743333445579999999985543
No 137
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=62.59 E-value=2 Score=27.69 Aligned_cols=42 Identities=33% Similarity=0.669 Sum_probs=28.0
Q ss_pred CCccccccCcccCCCceEEcCC--CC-CccchHHHHHHHhc----CCCCccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPK--CN-HGFHVRCIDKWLRS----NSSCPKCRH 168 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CPlCR~ 168 (210)
...| ||.... .+ .++.... |. .-||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4567 997753 33 4666666 54 899999998 322 236999964
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.09 E-value=5.8 Score=26.84 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=24.1
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDK 155 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~ 155 (210)
...|.+|...|.--..--....||.+|+..|-..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4689999999964322233446999999999543
No 139
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.70 E-value=1.1 Score=32.93 Aligned_cols=49 Identities=20% Similarity=0.458 Sum_probs=32.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCL 170 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l 170 (210)
...|..|-..|.--..--....||.+|+..|-.........|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3689999999975333334557999999999776655556677775443
No 140
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.41 E-value=4.5 Score=25.92 Aligned_cols=40 Identities=23% Similarity=0.614 Sum_probs=28.8
Q ss_pred CCccccccCcccC--CCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAP--GERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+-|-..+.. ++.+... -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCC
Confidence 3689999998885 3344332 5788998885 5788888775
No 141
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=61.12 E-value=17 Score=21.73 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 028342 52 MVLSVLL 58 (210)
Q Consensus 52 iil~il~ 58 (210)
|..+++.
T Consensus 12 IA~gVVg 18 (44)
T 2l2t_A 12 IAAGVIG 18 (44)
T ss_dssp HHHHHHH
T ss_pred EEEeehH
Confidence 3333333
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.00 E-value=0.8 Score=33.14 Aligned_cols=47 Identities=21% Similarity=0.647 Sum_probs=32.5
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCC----CCcccccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNS----SCPKCRHCLI 171 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CPlCR~~l~ 171 (210)
.|.||...-. ++.+.....|...||..|++.=|.... .||.|+..+.
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 6888876533 345666667999999999986443322 5998866544
No 143
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.97 E-value=9.5 Score=24.57 Aligned_cols=43 Identities=26% Similarity=0.593 Sum_probs=30.5
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
....|+-|-..+..++.+... -+..||.+|+ .|-.|+..|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 347899999998865555332 5678998874 477887777643
No 144
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=60.70 E-value=2.2 Score=28.34 Aligned_cols=46 Identities=20% Similarity=0.461 Sum_probs=33.4
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHh-----cCCCCcccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-----SNSSCPKCRHC 169 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CPlCR~~ 169 (210)
..| ||...+..+...+....|.-=||..|+..--. ..-.||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 455 89887765667777778999999999965421 23469999754
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.01 E-value=4.8 Score=32.46 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=26.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKW 156 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~W 156 (210)
+..|.+|...|.--..--.+..||++|+..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46999999999754333445679999999996654
No 146
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=59.99 E-value=1.9 Score=26.51 Aligned_cols=41 Identities=27% Similarity=0.595 Sum_probs=28.0
Q ss_pred cccCcccCCCceEEcCCCCCccchHHHHHHHh---cCCCCccccc
Q 028342 127 ICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR---SNSSCPKCRH 168 (210)
Q Consensus 127 ICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CPlCR~ 168 (210)
||..... +...+....|+-=||..|+..--. .+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 455666777999999999864322 2346998865
No 147
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.02 E-value=7.7 Score=25.10 Aligned_cols=40 Identities=23% Similarity=0.552 Sum_probs=30.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-+.+..++.+.. -+..||.+|+ .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 4789999999987776654 5788998874 47888887763
No 148
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=58.32 E-value=1.7 Score=31.07 Aligned_cols=45 Identities=24% Similarity=0.684 Sum_probs=30.5
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhcC----CCCcccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSN----SSCPKCRHC 169 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CPlCR~~ 169 (210)
.|.||...-. ++.+.....|...||..|++.=+... -.||.|+..
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 5778865533 34566667799999999998655432 258888543
No 149
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=57.76 E-value=7.7 Score=34.08 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=34.0
Q ss_pred CCCCccccccCcccCCCceEEcC--CCCCccchHHHHHHHhc----------CCCCcccccc
Q 028342 120 GLDTECVICLSEFAPGERVRLLP--KCNHGFHVRCIDKWLRS----------NSSCPKCRHC 169 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp--~C~H~FH~~CI~~Wl~~----------~~~CPlCR~~ 169 (210)
+.+..|.+|-+ |..+..+. .|...|+.+||+.++.. .=+|=+|.-.
T Consensus 91 G~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 45678999974 45566766 79999999999999822 2268888543
No 150
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.71 E-value=7.7 Score=24.66 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=29.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
...|+.|-+.+..++.+... -+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 36899999998876544332 5678998774 477887777543
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=57.40 E-value=2.2 Score=37.29 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhc-------CCCCccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS-------NSSCPKCRHCL 170 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~~CPlCR~~l 170 (210)
...|.+|...|.--..-..+..||++||..|-..++.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 36899999998643222334469999999998876521 23577775544
No 152
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.54 E-value=8.2 Score=24.52 Aligned_cols=41 Identities=24% Similarity=0.550 Sum_probs=29.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-..+..++.+... -+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCC
Confidence 46899999998875444332 5788998875 47788777754
No 153
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.23 E-value=26 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=13.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 028342 44 SSFDSNVLMVLSVLLCALICAIGLASLV 71 (210)
Q Consensus 44 ~~~~~~~iiil~il~~~li~~l~l~~i~ 71 (210)
++......-+++-++.++++++.++++.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 3344566666665554444444444333
No 154
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=55.78 E-value=3.3 Score=33.75 Aligned_cols=45 Identities=29% Similarity=0.728 Sum_probs=27.8
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhc--C---CCCccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRS--N---SSCPKCRH 168 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~---~~CPlCR~ 168 (210)
..|.+|...- +++.+..+..|...||..|++.=|.. . =.||.|+.
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3588886542 33455667789999999999954432 1 25999965
No 155
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.06 E-value=10 Score=25.58 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028342 49 NVLMVLSVLLCALICAIGLASLVKCS 74 (210)
Q Consensus 49 ~~iiil~il~~~li~~l~l~~i~~~~ 74 (210)
.+.+++++++.++++.+++.++.+++
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.54 E-value=11 Score=24.82 Aligned_cols=42 Identities=26% Similarity=0.534 Sum_probs=30.6
Q ss_pred CCCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 121 LDTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
....|+.|-..+..++.+.. -+..||.+|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCC
Confidence 34789999999877666653 5778998884 467787776543
No 157
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=54.46 E-value=3 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=19.7
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHH
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCI 153 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI 153 (210)
+.|+.|-..+-..+.+.. =|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 579999877665555442 5788998884
No 158
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.01 E-value=10 Score=24.99 Aligned_cols=39 Identities=26% Similarity=0.652 Sum_probs=29.9
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+-|-..+.+++.+.. -+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 4689999999887777665 4678998874 4778887775
No 159
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.34 E-value=12 Score=24.47 Aligned_cols=42 Identities=17% Similarity=0.542 Sum_probs=30.5
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
...|+.|-..+..++.+... =+..||.+|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 36899999998876664332 5778998874 477888777643
No 160
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=52.97 E-value=24 Score=24.44 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=35.8
Q ss_pred CCccccccCccc---CCCceEEcCCCCCccchHHHHHHHhc-CCCCcccccccc
Q 028342 122 DTECVICLSEFA---PGERVRLLPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~---~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CPlCR~~l~ 171 (210)
...|.||-+++- +|+.-.....|+--.+..|++-=.+. ++.||-|+....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 469999998853 44433444457777899998876554 568999987765
No 161
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.89 E-value=3.3 Score=27.33 Aligned_cols=40 Identities=28% Similarity=0.492 Sum_probs=28.4
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-..+.+++.+.. -+..||.+|+. |-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF~--------C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCFL--------CMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSEE--------CSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccCc--------cCCCCCCCCC
Confidence 3689999999877776544 56788887753 6677776653
No 162
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.84 E-value=9.1 Score=24.24 Aligned_cols=40 Identities=23% Similarity=0.610 Sum_probs=27.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~ 173 (210)
...|+.|-+.+. ++.+.. -+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ceEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 368999988877 344443 5678898885 477787776643
No 163
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.16 E-value=14 Score=23.40 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=27.5
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+.|-..+..++.+... =+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 36899998888764433332 4678898774 4778877774
No 164
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=51.13 E-value=6.8 Score=25.37 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=10.7
Q ss_pred cccccCcccCCCceEEcCCCCCccchHH
Q 028342 125 CVICLSEFAPGERVRLLPKCNHGFHVRC 152 (210)
Q Consensus 125 CaICLeef~~~~~vr~lp~C~H~FH~~C 152 (210)
|+.|-+.+..++.+.. -+..||.+|
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT
T ss_pred CCCCCCEEECceEEEE---CCccccCCC
Confidence 4455444443333322 244455444
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.77 E-value=16 Score=21.84 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 028342 52 MVLSVLLCALICAIGL 67 (210)
Q Consensus 52 iil~il~~~li~~l~l 67 (210)
|..+++..+++++++.
T Consensus 13 IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 13 IATGMVGALLLLLVVA 28 (44)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 4555655444444333
No 166
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=50.13 E-value=49 Score=22.02 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=8.0
Q ss_pred HHHHHHHHhccCccc
Q 028342 67 LASLVKCSLRCSRLE 81 (210)
Q Consensus 67 l~~i~~~~~r~~~~~ 81 (210)
++....|++|..+..
T Consensus 30 li~gcwcylrlqri~ 44 (90)
T 1zza_A 30 LILGCWCYLRLQRIS 44 (90)
T ss_dssp HHHHHHTTTSSCSSC
T ss_pred HHHHHHHHHHHHHHh
Confidence 344456666655543
No 167
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=49.10 E-value=4.3 Score=36.73 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=34.5
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHh-----cCCCCcccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-----SNSSCPKCRHC 169 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CPlCR~~ 169 (210)
...| ||...+..+...+.+..|.-=||..|+.---. .+-.||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3457 99888765666777878999999999864322 13479999754
No 168
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.56 E-value=9.8 Score=28.95 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCCccccccCccc--CCCceEEcCCCCCccchHHHHHHHhcCC--CCccccc
Q 028342 121 LDTECVICLSEFA--PGERVRLLPKCNHGFHVRCIDKWLRSNS--SCPKCRH 168 (210)
Q Consensus 121 ~~~~CaICLeef~--~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--~CPlCR~ 168 (210)
.+..|++|...|. .+. -+++..|+|.++..|= .|+.... .|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCC-CCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4589999999864 333 3455569999999996 3443322 3777754
No 169
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.01 E-value=21 Score=23.77 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=28.2
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-+.+.. +.+. .-+..||.+|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccCC--------EecCCCCCCCC
Confidence 4689999988875 3333 26789998884 47788877764
No 170
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.88 E-value=15 Score=23.60 Aligned_cols=40 Identities=25% Similarity=0.691 Sum_probs=28.0
Q ss_pred CCccccccCcccC--CCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAP--GERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+.|-..+.+ ++.+... -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCC
Confidence 3689999998885 3333332 5788998885 4777777765
No 171
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=46.66 E-value=9.6 Score=28.84 Aligned_cols=39 Identities=28% Similarity=0.698 Sum_probs=26.5
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
..|+.|-..+..++.++. .-++.||.+|+ .|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~--a~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR--AQDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE--ETTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE--cCCceEeeCCC--------cCCCCCCCCC
Confidence 578888877776555433 25788888885 5677766664
No 172
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.42 E-value=5.7 Score=28.07 Aligned_cols=40 Identities=18% Similarity=0.415 Sum_probs=26.7
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
..|++|..++.-.........|+-- ++....||-|..+|.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHH
Confidence 6899999887643333344445543 345668999988775
No 173
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=45.30 E-value=34 Score=22.35 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhccCccc
Q 028342 52 MVLSVLLCALICA-IGLASLVKCSLRCSRLE 81 (210)
Q Consensus 52 iil~il~~~li~~-l~l~~i~~~~~r~~~~~ 81 (210)
++|+..+..++++ +.++.-.+|..|+++..
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAe 42 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAE 42 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCT
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555444444 44454678887766543
No 174
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=44.62 E-value=29 Score=23.68 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=29.0
Q ss_pred CCccccccCcccCCCceEEcC-CCCCccchHHHHHHHhcC
Q 028342 122 DTECVICLSEFAPGERVRLLP-KCNHGFHVRCIDKWLRSN 160 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp-~C~H~FH~~CI~~Wl~~~ 160 (210)
.-.|.+|.+.+++..-|. +| .=+|.|+-.|-...++.+
T Consensus 15 ~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHHH
T ss_pred eeEeecchhhhccCceee-CCCccCCeeeccccHHHHHhc
Confidence 468999999998766553 33 235999999999998763
No 175
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.17 E-value=14 Score=24.12 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+-|-+.+.. +.+. .-+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVK---LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCEE---CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cEEE---ECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999988875 3333 26789998885 4788888775
No 176
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=44.10 E-value=30 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 028342 49 NVLMVLSVLLCALICAIGLASL 70 (210)
Q Consensus 49 ~~iiil~il~~~li~~l~l~~i 70 (210)
...-+-+.++++++++++++++
T Consensus 15 ~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheecchhhHHHHHHHHHHHH
Confidence 3444444555555555554444
No 177
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.42 E-value=16 Score=24.53 Aligned_cols=40 Identities=30% Similarity=0.629 Sum_probs=28.1
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+-|-..+.+++.+. .-+..||.+|+. |-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF~--------C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCFR--------CSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTCB--------CTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCCe--------eCCCCCCCCC
Confidence 468999999988766653 267889988854 5566655543
No 178
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.76 E-value=20 Score=23.37 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+-|-..+. ++.+. .-+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCCC--------EeCCCCCccCC
Confidence 468999998887 34433 36788998774 57888877764
No 179
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=42.58 E-value=22 Score=25.56 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=29.9
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+-|-..+.+...+.. -+..||.+|+ .|-.|+..|.+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 100 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLGD 100 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCcccc
Confidence 3689999998876544444 5788998884 58899888863
No 180
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=42.43 E-value=62 Score=21.28 Aligned_cols=21 Identities=10% Similarity=0.374 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028342 50 VLMVLSVLLCALICAIGLASL 70 (210)
Q Consensus 50 ~iiil~il~~~li~~l~l~~i 70 (210)
..-+-+.++++++++++++++
T Consensus 15 tLRiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 181
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=41.99 E-value=34 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028342 49 NVLMVLSVLLCALICAIGLASLVKCSL 75 (210)
Q Consensus 49 ~~iiil~il~~~li~~l~l~~i~~~~~ 75 (210)
...+++++++.++++-+++.++.+.+.
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655555555555555555544
No 182
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=41.26 E-value=68 Score=23.70 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.6
Q ss_pred CChhHHHHHHhh
Q 028342 6 STTTQLFQDFLG 17 (210)
Q Consensus 6 ~~~~~~~~~~~~ 17 (210)
++-..|.|.+.+
T Consensus 20 ~~L~~l~~e~~~ 31 (138)
T 2k21_A 20 PFLTKLWQETVQ 31 (138)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344555554433
No 183
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=41.12 E-value=37 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.699 Sum_probs=13.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 028342 46 FDSNVLMVLSVLLCALICAIGLASLV 71 (210)
Q Consensus 46 ~~~~~iiil~il~~~li~~l~l~~i~ 71 (210)
|++...-+-+.+++++++++++.++.
T Consensus 14 YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 14 YDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHheeccchhHHHHHHHHHHHHH
Confidence 44444555555555555555555553
No 184
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.61 E-value=3.7 Score=27.61 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.0
Q ss_pred eEEcC-----CCCCccchHHHHHHH
Q 028342 138 VRLLP-----KCNHGFHVRCIDKWL 157 (210)
Q Consensus 138 vr~lp-----~C~H~FH~~CI~~Wl 157 (210)
....+ .|+|.|+..|-..|-
T Consensus 45 ~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 45 KVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cCCCCCCCCCCCCCeeccccCcccc
Confidence 34565 699999999998883
No 185
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.42 E-value=17 Score=24.34 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=28.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-..+. ++.+.. -+..||.+|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVA---LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEE---TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEEE---CCccccccCC--------ccCCCCCCCCC
Confidence 478999999885 444433 6789998875 47788877763
No 186
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=40.39 E-value=13 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=14.4
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHH
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCID 154 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~ 154 (210)
.|+.|-..+..++.+.. .-+..||.+|+.
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF~ 38 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECFK 38 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTCB
T ss_pred cccCCCCeecCCceEEE--ECCcccccccCc
Confidence 56666665554333321 134556655543
No 187
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=39.71 E-value=32 Score=29.95 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=27.7
Q ss_pred CccccccCcccCCCceEEcCCCCCc--cchHHHHHHHhcC--CCCccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHG--FHVRCIDKWLRSN--SSCPKCRHCL 170 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~--FH~~CI~~Wl~~~--~~CPlCR~~l 170 (210)
-.|++=...+. ..+|-.. |.|. |-.+=+-...... -.||+|...+
T Consensus 250 L~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 46887766654 4566665 9997 5543333332222 3699998765
No 188
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=38.72 E-value=41 Score=19.12 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 028342 51 LMVLSVLLC 59 (210)
Q Consensus 51 iiil~il~~ 59 (210)
+++.++++.
T Consensus 14 ~I~~~vv~G 22 (41)
T 2k9y_A 14 AVIGGVAVG 22 (41)
T ss_dssp HHHHHHHHH
T ss_pred EEEeehhHH
Confidence 334444433
No 189
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=38.58 E-value=78 Score=20.82 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 028342 49 NVLMVLSVLLCALICAIGLASLVKCSLRCSRL 80 (210)
Q Consensus 49 ~~iiil~il~~~li~~l~l~~i~~~~~r~~~~ 80 (210)
.-.++++.+++++-+++++.--++|....+.+
T Consensus 18 iGGLifA~vLfi~GI~iilS~KckCk~~qk~r 49 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCccccCCCCCCC
Confidence 45677788888888888888888887766554
No 190
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.69 E-value=32 Score=22.41 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCCCccccccCcccCCCceEEcCCC-CCccchHHHHHH
Q 028342 120 GLDTECVICLSEFAPGERVRLLPKC-NHGFHVRCIDKW 156 (210)
Q Consensus 120 ~~~~~CaICLeef~~~~~vr~lp~C-~H~FH~~CI~~W 156 (210)
++..-|.||.++ ..+|-+. | +-.|+..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 345789999876 4577776 9 799999998775
No 191
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=37.23 E-value=15 Score=25.01 Aligned_cols=40 Identities=23% Similarity=0.582 Sum_probs=26.2
Q ss_pred CccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
..|+.|-.++..+........|+-.| .....||-|.++|.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~---------~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDF---------SLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEE---------EEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCCceECccccccC---------CCcccCcchhhHHH
Confidence 57888988877655555555565432 23447888888774
No 192
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.56 E-value=13 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.516 Sum_probs=22.2
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
.|+.|-..+..++.++.- -+..||.+|+ .|-.|...|.
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 105 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLECF--------KCAACQKHFC 105 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ChhhcCCccCccceeEee--CCceECccCc--------ccCCCCCCCC
Confidence 677777666654433322 4667776663 4666666653
No 193
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.44 E-value=29 Score=22.47 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=27.8
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-..+. ++.+.. -+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVSA---LGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC-SCCEEE---TTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEec-cceEEE---CCceeCccCC--------ccccCCCCCCC
Confidence 358999999887 444443 5788998875 47778777653
No 194
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=35.89 E-value=10 Score=24.95 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=9.6
Q ss_pred HHHHhcCCCCcccccccc
Q 028342 154 DKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 154 ~~Wl~~~~~CPlCR~~l~ 171 (210)
+.||..-..||.|+..|.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 344445555666666555
No 195
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=35.73 E-value=11 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=15.2
Q ss_pred cCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 141 LPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 141 lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
+..|||.|-.. .....||.|-..+..
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred CCCCCCcccCC------CCCCcCCCCCCccee
Confidence 33577777533 123368988777543
No 196
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=35.31 E-value=41 Score=29.12 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=28.8
Q ss_pred CccccccCcccCCCceEEcCCCCCc--cchHHHHHHHhcC--CCCcccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHG--FHVRCIDKWLRSN--SSCPKCRHCLI 171 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~--FH~~CI~~Wl~~~--~~CPlCR~~l~ 171 (210)
-.|+|=...++ ..+|-.. |.|. |-.+=+-.....+ -.||+|...+.
T Consensus 216 L~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 46887766654 4566665 9998 5544333333333 36999988663
No 197
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=35.20 E-value=4.7 Score=27.40 Aligned_cols=28 Identities=32% Similarity=0.806 Sum_probs=19.6
Q ss_pred eEEcCCCCCccchHHHHHHHhcCC--CCcc
Q 028342 138 VRLLPKCNHGFHVRCIDKWLRSNS--SCPK 165 (210)
Q Consensus 138 vr~lp~C~H~FH~~CI~~Wl~~~~--~CPl 165 (210)
....+.|++.|+..|-..|=+.|. +|..
T Consensus 43 ~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp CEECTTTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred ceEeCCCCCccccccCCchhhcCCCCChHH
Confidence 356778999999999888843343 4544
No 198
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=35.00 E-value=14 Score=28.24 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=5.7
Q ss_pred CccccccCcccC
Q 028342 123 TECVICLSEFAP 134 (210)
Q Consensus 123 ~~CaICLeef~~ 134 (210)
-.|..|...+..
T Consensus 88 F~C~~C~~~L~~ 99 (182)
T 2jtn_A 88 LKCSDCHVPLAE 99 (182)
T ss_dssp TSCTTTCCCCSS
T ss_pred CccCCCCCccCC
Confidence 345555554443
No 199
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=34.81 E-value=16 Score=25.85 Aligned_cols=13 Identities=38% Similarity=1.160 Sum_probs=11.1
Q ss_pred ccchHHHHHHHhc
Q 028342 147 GFHVRCIDKWLRS 159 (210)
Q Consensus 147 ~FH~~CI~~Wl~~ 159 (210)
.||..|+..|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999854
No 200
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=34.30 E-value=17 Score=25.74 Aligned_cols=13 Identities=38% Similarity=0.974 Sum_probs=11.0
Q ss_pred ccchHHHHHHHhc
Q 028342 147 GFHVRCIDKWLRS 159 (210)
Q Consensus 147 ~FH~~CI~~Wl~~ 159 (210)
.||..|+..|++.
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999853
No 201
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=33.80 E-value=16 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCI 153 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI 153 (210)
...|+.|-..+..++.++.. =+..||.+|+
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 95 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 95 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEES--SSCEEETTTC
T ss_pred CCccccCCCccccCCeEEEe--CCcchHHhCC
Confidence 46899999888876655443 4688998774
No 202
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=33.67 E-value=5 Score=26.01 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=28.1
Q ss_pred CccccccCcccCCCceEEcC--CCCCccchHHHHHHH---h-----cCCCCccccc
Q 028342 123 TECVICLSEFAPGERVRLLP--KCNHGFHVRCIDKWL---R-----SNSSCPKCRH 168 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp--~C~H~FH~~CI~~Wl---~-----~~~~CPlCR~ 168 (210)
..| ||-.....+. .+... .|.-=||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 8976655544 44553 488899999984311 0 1346999974
No 203
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=32.16 E-value=24 Score=27.03 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=21.6
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHH
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCID 154 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~ 154 (210)
.|+.|-..+..++.++.. -++.||.+|+.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF~ 99 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCFT 99 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGCB
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCCe
Confidence 699999888766654432 67899999854
No 204
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=32.00 E-value=32 Score=21.90 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=28.3
Q ss_pred CCccccccCcccC---CCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAP---GERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~---~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+-|-..+.. ++.+..- =+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCC
Confidence 3689999998885 3333322 4678998874 4888988876
No 205
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.68 E-value=19 Score=22.37 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=27.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-..+. ++.+. .-+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVN---AMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEEC---CTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEEE---ECccccccCcC--------EECCCCCCCCC
Confidence 368999998887 44332 25788998874 47888887753
No 206
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=30.85 E-value=11 Score=33.63 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=32.8
Q ss_pred cccccCcccCCCceEEcCCCCCccchHHHHHHHh-----cCCCCcccccc
Q 028342 125 CVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLR-----SNSSCPKCRHC 169 (210)
Q Consensus 125 CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CPlCR~~ 169 (210)
.-||...+.++...+.+..|.-=||..|+.---. .+-.||.|+..
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 3489887765667777878999999999853221 23479999764
No 207
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.25 E-value=30 Score=22.43 Aligned_cols=40 Identities=23% Similarity=0.553 Sum_probs=27.4
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+.|-..+..++.+.. .=+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF--YEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC--CSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEE--eCCccccccCC--------eecCCCCccC
Confidence 3689999998884343322 24688998774 4778877775
No 208
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.02 E-value=9.4 Score=24.98 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=15.9
Q ss_pred HHHHHhcCCCCcccccccccc
Q 028342 153 IDKWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 153 I~~Wl~~~~~CPlCR~~l~~~ 173 (210)
++.||..-..||+|+..|...
T Consensus 3 md~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEE
T ss_pred CCHHHHHHhCCCCCCCcCeEe
Confidence 356777777899999988754
No 209
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.69 E-value=17 Score=22.69 Aligned_cols=26 Identities=12% Similarity=0.434 Sum_probs=14.3
Q ss_pred CccccccCcccCCCceEEcC--CCCCcc
Q 028342 123 TECVICLSEFAPGERVRLLP--KCNHGF 148 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp--~C~H~F 148 (210)
-.|++|..++...+..-+.+ .|++.|
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 47999988755332222333 455554
No 210
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.87 E-value=57 Score=22.68 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=14.6
Q ss_pred CccccccCcccC-CCceEEcCCCCCccchHHHHHHH
Q 028342 123 TECVICLSEFAP-GERVRLLPKCNHGFHVRCIDKWL 157 (210)
Q Consensus 123 ~~CaICLeef~~-~~~vr~lp~C~H~FH~~CI~~Wl 157 (210)
-.|..|-..+.+ +..... .=+..|+..|..+-+
T Consensus 31 F~C~~C~~~L~~~g~~~~~--~~g~~yC~~~y~~~f 64 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYY--KLGRKLCRRDYLRLG 64 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCC--BTTBCCCHHHHHHHH
T ss_pred CcccccCCchhcCCCeeEE--ECCeeechHHHHHHh
Confidence 355555555542 112111 134556666655543
No 211
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=27.06 E-value=89 Score=18.00 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=14.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHH
Q 028342 45 SFDSNVLMVLSVLLCALICAIGLAS 69 (210)
Q Consensus 45 ~~~~~~iiil~il~~~li~~l~l~~ 69 (210)
.+.+..+-++++++.++.+++.+..
T Consensus 9 ~LPsI~VPlVglvfPai~Mallf~y 33 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hCChhhHhHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666655443
No 212
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=26.94 E-value=97 Score=17.94 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 028342 49 NVLMVLSVLLCALICAIGLA 68 (210)
Q Consensus 49 ~~iiil~il~~~li~~l~l~ 68 (210)
...++++++..++..++++.
T Consensus 12 i~lII~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLIS 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 213
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.72 E-value=49 Score=20.52 Aligned_cols=38 Identities=26% Similarity=0.634 Sum_probs=26.7
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+.|-..+.. +.+.. -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGVTY---REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEEES---SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceEEE---CccccCCCCC--------ccCCCCCcCC
Confidence 3679999888864 33332 5788998774 4778887774
No 214
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.57 E-value=14 Score=20.82 Aligned_cols=9 Identities=44% Similarity=1.132 Sum_probs=4.5
Q ss_pred Ccccccccc
Q 028342 163 CPKCRHCLI 171 (210)
Q Consensus 163 CPlCR~~l~ 171 (210)
||+|...+.
T Consensus 8 CP~C~~~l~ 16 (34)
T 3mjh_B 8 CPQCMKSLG 16 (34)
T ss_dssp CTTTCCEES
T ss_pred CcHHHHHcC
Confidence 555554443
No 215
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.40 E-value=42 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.471 Sum_probs=25.1
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+-|-..+.. +.+ ..-+..||.+|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-~~v---~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL---EAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB---CCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE---EeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3578888887764 322 236778888774 4667766665
No 216
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.80 E-value=37 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=15.8
Q ss_pred ceEEcCCCCCccchHHHHHHHhcCCCCccccc
Q 028342 137 RVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRH 168 (210)
Q Consensus 137 ~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~ 168 (210)
..-+++.|||++-. .....||+|..
T Consensus 137 ~~~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEEES-------CCCSBCTTTCC
T ss_pred CeeEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 34456678988752 22347999964
No 217
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=25.21 E-value=79 Score=20.54 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 028342 49 NVLMVLSVLLCALICAIGLASLVKCSLRCSRLE 81 (210)
Q Consensus 49 ~~iiil~il~~~li~~l~l~~i~~~~~r~~~~~ 81 (210)
.-.++++.+++++.+++++.--++|....+.+.
T Consensus 19 igGLifA~vLfi~GI~iilS~kcrCk~~qk~~~ 51 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSGKCKCRRNHTPSS 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHTCCTTT
T ss_pred ecchhhHHHHHHHHHHHHHcCcccccCCCCCCC
Confidence 456777777777777777888888877655443
No 218
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.38 E-value=39 Score=20.86 Aligned_cols=39 Identities=28% Similarity=0.676 Sum_probs=27.5
Q ss_pred CccccccCcccCCCceEEcCCCCCccc--hHHHHHHHhcCCCCcccccccc
Q 028342 123 TECVICLSEFAPGERVRLLPKCNHGFH--VRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp~C~H~FH--~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
..|+-|-..+..++....- -+..|| .+|+ .|-.|+..|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCC
Confidence 4799999888875333322 578899 8884 4778887775
No 219
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.09 E-value=55 Score=21.05 Aligned_cols=38 Identities=21% Similarity=0.539 Sum_probs=27.5
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 171 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~ 171 (210)
...|+-|-..+.+ ..+.. -+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHhc--------CcccCCCccC
Confidence 4689999988873 33433 5688998774 4888888775
No 220
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.05 E-value=15 Score=23.31 Aligned_cols=35 Identities=20% Similarity=0.531 Sum_probs=22.5
Q ss_pred CccccccCcccCCCceEEcC--C--CCCccchHHHHHHH
Q 028342 123 TECVICLSEFAPGERVRLLP--K--CNHGFHVRCIDKWL 157 (210)
Q Consensus 123 ~~CaICLeef~~~~~vr~lp--~--C~H~FH~~CI~~Wl 157 (210)
..|+-|...++..+....+. . |++.|+..|...|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 57899988887765433222 2 66777766766664
No 221
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=23.88 E-value=72 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=14.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHH
Q 028342 42 GESSFDSNVLMVLSVLLCALICAI 65 (210)
Q Consensus 42 ~~~~~~~~~iiil~il~~~li~~l 65 (210)
..-..++..++++.+++++++++|
T Consensus 64 ~GlKV~P~~VLv~sl~Fi~~Vi~L 87 (96)
T 2wwb_C 64 PGLKVGPVPVLVMSLLFIASVFML 87 (96)
T ss_dssp CCCCCSSCSHHHHHHHHHHHHHHH
T ss_pred CceEECCEEehhhHHHHHHHHHHH
Confidence 345566667777666665555443
No 222
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.09 E-value=24 Score=18.94 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=8.3
Q ss_pred CCCccccccccc
Q 028342 161 SSCPKCRHCLIE 172 (210)
Q Consensus 161 ~~CPlCR~~l~~ 172 (210)
..||+|+..+..
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468888876653
No 223
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.46 E-value=9.3 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHhcCCCCcccccccccc
Q 028342 155 KWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 155 ~Wl~~~~~CPlCR~~l~~~ 173 (210)
.||..-..||+|+..|...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 4555566799999888754
No 224
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.23 E-value=45 Score=28.53 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCccccccCcccC-CCceEEcCCCCCccchHHHHH
Q 028342 122 DTECVICLSEFAP-GERVRLLPKCNHGFHVRCIDK 155 (210)
Q Consensus 122 ~~~CaICLeef~~-~~~vr~lp~C~H~FH~~CI~~ 155 (210)
...|..|-..|.. ...--.+..||.++|..|...
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 3789999887752 122223446999999999654
No 225
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.22 E-value=47 Score=20.16 Aligned_cols=34 Identities=29% Similarity=0.705 Sum_probs=21.4
Q ss_pred ccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCcccccccccccc
Q 028342 124 ECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCQ 175 (210)
Q Consensus 124 ~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~~~~ 175 (210)
.|.-|..+|.. +++..+| .-.||.|--.++.+..
T Consensus 5 ~C~rCg~~fs~-~el~~lP-----------------~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 5 RCGKCWKTFTD-EQLKVLP-----------------GVRCPYCGYKIIFMVR 38 (48)
T ss_dssp CCCCTTTTCCC-CCSCCCS-----------------SSCCTTTCCSCEECCC
T ss_pred EeeccCCCccH-HHHhhCC-----------------CcccCccCcEEEEEec
Confidence 46667777665 3334455 3469999877776543
No 226
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.87 E-value=7 Score=33.23 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCccccccCcccCCCceEE---cCCCCCccchHHHHHHHhcCCCCcccccc
Q 028342 121 LDTECVICLSEFAPGERVRL---LPKCNHGFHVRCIDKWLRSNSSCPKCRHC 169 (210)
Q Consensus 121 ~~~~CaICLeef~~~~~vr~---lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~ 169 (210)
....|+||-..-..+ .++. -.+=.+.+|.-|=..|-..+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 357999997664321 1110 00111445556667787778899999665
No 227
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.92 E-value=93 Score=22.33 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028342 50 VLMVLSVLLCALICAIGLASL 70 (210)
Q Consensus 50 ~iiil~il~~~li~~l~l~~i 70 (210)
++++++++++++++++++.+.
T Consensus 98 ~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 98 MMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhee
No 228
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.69 E-value=70 Score=20.34 Aligned_cols=39 Identities=15% Similarity=0.404 Sum_probs=27.9
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchHHHHHHHhcCCCCccccccccc
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 172 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CPlCR~~l~~ 172 (210)
...|+.|-..+.+ +.+.. -+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCC
Confidence 3689999988875 44443 5678998774 47888887764
No 229
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.50 E-value=1.2e+02 Score=19.35 Aligned_cols=35 Identities=17% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCccccccCcccCCCceEEcCCCCCccchH-HHHHH
Q 028342 122 DTECVICLSEFAPGERVRLLPKCNHGFHVR-CIDKW 156 (210)
Q Consensus 122 ~~~CaICLeef~~~~~vr~lp~C~H~FH~~-CI~~W 156 (210)
+..|+-|-.++..|+....-...-|.|+.. ||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 468999999999999887766688999965 88875
No 230
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.38 E-value=9.2 Score=25.06 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=12.8
Q ss_pred HHHhcCCCCcccccccccc
Q 028342 155 KWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 155 ~Wl~~~~~CPlCR~~l~~~ 173 (210)
.||..-..||+|+..|...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFD 21 (68)
T ss_dssp CCCEEECBCTTTCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 3444455799999887754
No 231
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.29 E-value=9.8 Score=25.08 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=12.5
Q ss_pred HHHhcCCCCcccccccccc
Q 028342 155 KWLRSNSSCPKCRHCLIES 173 (210)
Q Consensus 155 ~Wl~~~~~CPlCR~~l~~~ 173 (210)
.||..-..||.|+..|...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEE
T ss_pred hHHhhheECCCCCCcCEEe
Confidence 3444555788888877644
No 232
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.04 E-value=36 Score=25.25 Aligned_cols=25 Identities=32% Similarity=0.826 Sum_probs=18.5
Q ss_pred CccccccCccc--CCCceEEcCCCCCcc
Q 028342 123 TECVICLSEFA--PGERVRLLPKCNHGF 148 (210)
Q Consensus 123 ~~CaICLeef~--~~~~vr~lp~C~H~F 148 (210)
..|+-|-.+|. +++ .-++|.|+|-+
T Consensus 28 P~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred CCCCCCCCcceEecCC-eEECCcccccc
Confidence 68999999975 433 45677788875
Done!