BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028343
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLL---NLIVEEKFRRAIPGGTGG 57
+Y+RPLL+G G V+GV PA EY F +A PVGNY KG L N ++++ + RA P GTG
Sbjct: 127 LYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGA 186
Query: 58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY--IEEVSTSNIF-LVKGNEISTPPTSG 114
K NYA P A + F+DV++L+ + IEEV ++N F + K NE T P S
Sbjct: 187 AKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFIT-PLSP 245
Query: 115 TILPGITRKSIIEIT-HVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE- 172
+ILP +T+ S++ + H G + E + V+EL E GTA ++ + + + D+
Sbjct: 246 SILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDF 305
Query: 173 RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
+ Y G V KLY+ +TGIQ G ++ GW ++D
Sbjct: 306 HVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGG 57
+Y+RP + + P LGV PA++Y ++ ASP G Y KG +++ V ++ RA PGGTG
Sbjct: 143 LYLRPFIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGA 202
Query: 58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
K NYA AEA G V++L+A +YIEE+ NIF V G+ + TP
Sbjct: 203 AKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPE 262
Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELF------DAEEVFCTGTAVGVNSVN 165
SG++LPGITR S++++ G+ V+ER I ++E + EVF GTA + V
Sbjct: 263 LSGSLLPGITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVA 322
Query: 166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
+ + G G V L + +TGIQ G D GW L
Sbjct: 323 RVRHGASEFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARL 367
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 16/226 (7%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGG 57
+Y+RP ++ + P LGV P++EY ++ ASP G Y KG +++ + ++ RA PGGTG
Sbjct: 147 LYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGA 206
Query: 58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
K NYA A+A G V++L+A +Y+EE+ N+F V G+ + TP
Sbjct: 207 AKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPE 266
Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELF------DAEEVFCTGTAVGVNSVN 165
SG++LPGITR S++++ G+ V+ER I V+E + EVF GTA + V+
Sbjct: 267 LSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 326
Query: 166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
+ + D G G + L + +TGIQ G D GW L+
Sbjct: 327 HVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 16/226 (7%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGG 57
+Y+RP ++ + P LGV P++EY ++ ASP G Y KG +++ + ++ RA PGGTG
Sbjct: 148 LYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGA 207
Query: 58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
K NYA A+A G V++L+A +Y+EE+ N+F V G+ + TP
Sbjct: 208 AKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPE 267
Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELF------DAEEVFCTGTAVGVNSVN 165
SG++LPGITR S++++ G+ V+ER I V+E + EVF GTA + V+
Sbjct: 268 LSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 327
Query: 166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
+ + D G G + L + +TGIQ G D GW L+
Sbjct: 328 HVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 116/219 (52%), Gaps = 12/219 (5%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLL---NLIVEEKFRRAIPGGTGG 57
+Y+RP ++G G +GV A E+ F + PVG Y KG L N I + + RA P GTG
Sbjct: 142 LYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITSD-YDRAAPHGTGA 200
Query: 58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY--IEEVSTSNIFLV--KGNEISTPPTS 113
K NYA P EAK + F DV++L+ + IEE +N F + G + T P S
Sbjct: 201 AKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVT-PQS 259
Query: 114 GTILPGITRKSIIEIT-HVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE 172
+ILP IT+ S++ + H LG +V+E I ++EL E GTA + + I + D+
Sbjct: 260 PSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDD 319
Query: 173 -RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
+ Y G V ++LY+ + GIQ G E GW V++
Sbjct: 320 FHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 21/228 (9%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNY-HKGLLN---LIVEEKFRRAIPGGTG 56
+YIRP +G+ P LGV ++ SPVG Y G N L K+ RA GGTG
Sbjct: 160 LYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTG 219
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY-IEEVSTSNIFLVKGNE-----ISTP 110
K NY EA G VL+L E + I EV T N+FL NE ++TP
Sbjct: 220 DCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATP 279
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P G ILPG+TR+ I+++ H G ++V ER + +++L A E+F +GTA V
Sbjct: 280 PLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCP 339
Query: 164 VNSITYQDERIEYK--RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
V+ I Y+ E I + ++ +T IQ GR ++ WT+ L
Sbjct: 340 VSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGR--EERDWTIVL 385
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNY-HKGLLN---LIVEEKFRRAIPGGTG 56
+YIRP +G+ P LGV ++ SPVG Y G N L K+ RA GGTG
Sbjct: 140 LYIRPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTG 199
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY-IEEVSTSNIFLVKGNE-----ISTP 110
K NY E G VL+L + I EV T N+FL NE ++TP
Sbjct: 200 DCKMGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQITEVGTMNLFLYWINEDGEEELATP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P G ILPG+TR+ I+++ H G ++V ER + +++L A E+F +GTA V
Sbjct: 260 PLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCP 319
Query: 164 VNSITYQDERIEYK--RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
V+ I Y+ E I + ++ +T IQ GR E WT+ L
Sbjct: 320 VSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESD--WTIVL 365
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 16/219 (7%)
Query: 2 YIRPLLMGSGPVLGVAPASEYT--FITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
YIRPL+ +GV P + Y+ I A P G Y +G+ ++ + RA P
Sbjct: 95 YIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMV--SSWNRAAPN 152
Query: 54 GT-GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPT 112
KA NY +EA+ G+ + + L+ YI E + N+F VK + TPP
Sbjct: 153 TIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPF 212
Query: 113 SGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE 172
+ + LPGITR +II++ LG +V+E+ + E L+ A+EVF +GTA + V S+ +
Sbjct: 213 TSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV----D 268
Query: 173 RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
I+ G G V +++ + G+ TG EDK GW +++
Sbjct: 269 GIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 307
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 16/219 (7%)
Query: 2 YIRPLLMGSGPVLGVAPASEYT--FITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
YIRPL+ +GV P + Y+ I A P G Y +G+ ++ + RA P
Sbjct: 96 YIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMV--SSWNRAAPN 153
Query: 54 GT-GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPT 112
KA NY +EA+ G+ + + L+ YI E + N+F VK + TPP
Sbjct: 154 TIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPF 213
Query: 113 SGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE 172
+ + LPGITR +II++ LG +V+E+ + E L+ A+EVF +GTA + V S+ +
Sbjct: 214 TSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV----D 269
Query: 173 RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
I+ G G V +++ + G+ TG EDK GW +++
Sbjct: 270 GIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 308
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
+Y+RP+L+G+ P LGV+ PVG Y G ++L+ + F RA GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
K NY EA +G VL+L + + EV T NIF+ +E + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P +G ILPG+ R+S++++ G ++V ER I +++L A EVF +GTA V
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAP 319
Query: 164 VNSITYQDERIE 175
V+ I Y+D +
Sbjct: 320 VHRILYKDRNLH 331
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
+Y+RP+L+G+ P LGV+ PVG Y G ++L+ + F RA GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
K NY EA +G VL+L + + EV T NIF+ +E + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P +G ILPG+ R+S++++ G ++V ER I +++L A EVF +GTA V
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCP 319
Query: 164 VNSITYQDERIE 175
V+ I Y+D +
Sbjct: 320 VHRILYKDRNLH 331
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
+Y+RP+L+G+ P LGV+ PVG Y G ++L+ + F RA GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
K NY EA +G VL+L + + EV T NIF+ +E + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P +G ILPG+ R+S++++ G ++V ER I +++L A EVF +GTA V
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCP 319
Query: 164 VNSITYQDERIE 175
V+ I Y+D +
Sbjct: 320 VHRILYKDRNLH 331
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
+Y+RP+L+G+ P LGV+ PVG Y G ++L+ + F RA GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
K NY EA +G VL+L + + EV T NIF+ +E + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P +G ILPG+ R+S++++ G ++V ER I +++L A EVF +GTA V
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCP 319
Query: 164 VNSITYQDERIE 175
V+ I Y+D +
Sbjct: 320 VHRILYKDRNLH 331
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
+Y+RP+L+G+ P LGV+ PVG Y G ++L+ + F RA GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
K NY EA +G VL+L + + EV T NIF+ +E + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P +G ILPG+ R+S++++ G ++V ER I +++L A EVF +GTA V
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAP 319
Query: 164 VNSITYQDERIE 175
V+ I Y+D +
Sbjct: 320 VHRILYKDRNLH 331
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
+ +RP+L+G+ P LGV+ PVG Y G ++L+ + F RA GG G
Sbjct: 140 LXVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57 GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
K NY EA +G VL+L + + EV T NIF+ +E + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
P +G ILPG+ R+S++++ G ++V ER I +++L A EVF +GTA V
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCP 319
Query: 164 VNSITYQDERIE 175
V+ I Y+D +
Sbjct: 320 VHRILYKDRNLH 331
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 91/212 (42%), Gaps = 13/212 (6%)
Query: 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
YIRPL LGV P + + A G Y KG LI R
Sbjct: 95 YIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA-RLITSSWARFPANV 153
Query: 54 GTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTS 113
G K NY EA A G + L L+ E Y+ E S N+F V+ I S
Sbjct: 154 MPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHS 213
Query: 114 GTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDER 173
L GITR S+I I LGY+V+ ++L+ A+EVF TGTA V V+ I D R
Sbjct: 214 -VNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI---DWR 269
Query: 174 IEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGW 205
K AG V +L E+ TGR + GW
Sbjct: 270 PIGKGTAGPVALRLREVYLEAVTGRRPEYEGW 301
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 10/214 (4%)
Query: 2 YIRPLLMGSGPVLGVAPASEYTFITYAS-PVGNY--HKGL---LNLIVEEKFRRAIPGGT 55
Y+RP++ LGV+ + A+ P G Y +GL + + R +
Sbjct: 119 YLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSM 178
Query: 56 GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGT 115
KA Y EA A G+ + L L+ + Y+ E S N FLV ++ TP + +
Sbjct: 179 VRAKASGWYVNSILANQEATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLA-S 237
Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
L GITR ++I + G +V E+ I +E++ A+E F TGTA V + + D R
Sbjct: 238 CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL---DNRTI 294
Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
G + +KL + G+ W ++
Sbjct: 295 GGGARGPITEKLQSAFFDVVNGKSAKHADWLTKI 328
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 81 DVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERA 140
DV+ L + E S SN+FLVK ++ TP IL GITR+++I++ L V+ER
Sbjct: 164 DVILLGLNGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERV 223
Query: 141 IPVEELFDAEEVFCTGTAVGVNSVNSIT 168
+ V ELF+A+E F T T+ GV V +
Sbjct: 224 VWVWELFEADEXFLTHTSAGVVPVRRLN 251
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
+A A G D LF N E ++ E + +N+FL++ N + TP ILPGITR +I
Sbjct: 154 QAIAVGADDALFFNTENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQH 213
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
V+E ++ + + DA+ VF T + G+ V S+
Sbjct: 214 KXSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSL 248
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 75 KAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGY 134
K+ GF DV+F + ++ +E +TS + KG++I TP G ILPG T+ ++ G+
Sbjct: 201 KSNGFDDVIFTDGDRVLEG-ATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGW 259
Query: 135 QVKERAIPVEELFDAEEVFCTGTAVG 160
+ KE+ + +++LF A+ V+ + G
Sbjct: 260 RCKEKDLSIDDLFGADSVWLVSSVRG 285
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
EA KG + + L+ + E S+SN+F +K + T P + IL GITR +I + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
VKE E +E+F T T + V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
EA KG + + L+ + E S+SN+F +K + T P + IL GITR +I + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
VKE E +E+F T T + V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
EA KG + + L+ + E S+SN+F +K + T P + IL GITR +I + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
VKE E +E+F T T + V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 81 DVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERA 140
+ L L++E ++ E +N+F KGN + TP + GI R+ I + YQ+ E
Sbjct: 161 EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQ 220
Query: 141 IPVEELFDAEE-VFCTG 156
+EE A+E V C
Sbjct: 221 ASLEESLQADEMVICNA 237
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
EA KG + + L+ + + S+SN+F +K + T P + IL GITR +I + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTKGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
VKE E +E+F T T + V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
EA KG + + L+ + S+SN+F +K + T P + IL GITR +I + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTSGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
VKE E +E+F T T + V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
EA KG + + L+ + E S+SN+F +K + T P + I GITR +I + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
VKE E +E+F T T + V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 79 FTDVLFLNAEKYIEEVSTSNIFLVKGNEI 107
+ D+ F + EK+ E+ S +N+FLV +E+
Sbjct: 93 YGDIHFDDDEKWTEDASGTNLFLVAAHEL 121
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 79 FTDVLFLNAEKYIEEVSTSNIFLVKGNEI 107
+ D+ F + EK+ E+ S +N+FLV +E+
Sbjct: 93 YGDIHFDDDEKWTEDASGTNLFLVAAHEL 121
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 9 GSGPVLGVAPASEYTFITYASPVGNYHKGLLNLI-VEEKFRRAIPGGTGG 57
G+ PV GV ++ Y + +Y KG+ N+I E R I G GG
Sbjct: 166 GAAPVFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAENRYIAGDKGG 215
>pdb|2JBR|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBS|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
Length = 422
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 14/126 (11%)
Query: 14 LGVAPASEYTFIT--YASPV---GNYHKGLLNLIVEE----KFRRAIPGGTGGVKAVTNY 64
GV P S+Y + YA + G+ L+N+ + E K + + G + G +
Sbjct: 196 FGVIPRSDYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDS 255
Query: 65 AIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKS 124
I Y P A GF+ V AE+ IE V+ T G P + R
Sbjct: 256 KIFYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRA---YTGANVGLATPALMR-- 310
Query: 125 IIEITH 130
I E TH
Sbjct: 311 IAESTH 316
>pdb|2Z6B|A Chain A, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 584
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 83 LFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTIL 117
++ N + + ++ SN V+G+E T +GTIL
Sbjct: 463 IYYNMDNRLHQIDGSNTIFVRGDETKTVEGNGTIL 497
>pdb|1WTH|A Chain A, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
Length = 584
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 83 LFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTIL 117
++ N + + ++ SN V+G+E T +GTIL
Sbjct: 463 IYYNMDNRLHQIDGSNTIFVRGDETKTVEGNGTIL 497
>pdb|1K28|A Chain A, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 584
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 83 LFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTIL 117
++ N + + ++ SN V+G+E T +GTIL
Sbjct: 463 IYYNMDNRLHQIDGSNTIFVRGDETKTVEGNGTIL 497
>pdb|1PDL|A Chain A, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|B Chain B, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|C Chain C, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
Length = 575
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 83 LFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTIL 117
++ N + + ++ SN V+G+E T +GTIL
Sbjct: 463 IYYNMDNRLHQIDGSNTIFVRGDETKTVEGNGTIL 497
>pdb|2I2X|B Chain B, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|D Chain D, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|F Chain F, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|H Chain H, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|J Chain J, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|L Chain L, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|N Chain N, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|P Chain P, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 258
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 21/127 (16%)
Query: 82 VLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEI-----THVL---G 133
V+FL + I K N +TP T GT++ + + +I T +L G
Sbjct: 92 VIFLPNVMMSADAMLEGIEYCKENSGATPKTKGTVVCHVAEGDVHDIGKNIVTALLRANG 151
Query: 134 YQVKE--RAIPVEELFDAEE----VFCTGTAV------GVNSVNSITYQDE-RIEYKRGA 180
Y V + R +P EE+ A + + TGTA+ VN + ++ +I + G
Sbjct: 152 YNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGG 211
Query: 181 GTVGQKL 187
G V Q
Sbjct: 212 GAVNQDF 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,501,510
Number of Sequences: 62578
Number of extensions: 273045
Number of successful extensions: 694
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 45
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)