Query 028343
Match_columns 210
No_of_seqs 195 out of 1414
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02782 Branched-chain amino 100.0 7.1E-50 1.5E-54 356.9 25.8 210 1-210 188-403 (403)
2 PLN02259 branched-chain-amino- 100.0 5.5E-50 1.2E-54 356.0 24.8 210 1-210 174-388 (388)
3 PLN02883 Branched-chain amino 100.0 9.9E-50 2.2E-54 353.8 24.5 209 1-209 170-383 (384)
4 PLN03117 Branched-chain-amino- 100.0 3.5E-48 7.6E-53 341.9 25.6 210 1-210 138-351 (355)
5 TIGR01122 ilvE_I branched-chai 100.0 4.1E-47 8.9E-52 328.0 24.7 205 1-209 86-298 (298)
6 TIGR01123 ilvE_II branched-cha 100.0 4.9E-46 1.1E-50 323.4 24.7 209 1-209 94-313 (313)
7 PRK06606 branched-chain amino 100.0 5E-46 1.1E-50 322.4 24.5 205 1-209 95-306 (306)
8 PRK13357 branched-chain amino 100.0 4.2E-46 9E-51 329.0 23.8 209 1-210 135-356 (356)
9 cd01557 BCAT_beta_family BCAT_ 100.0 3.6E-44 7.8E-49 307.2 23.6 193 1-197 81-279 (279)
10 KOG0975 Branched chain aminotr 100.0 1.9E-44 4.1E-49 311.1 20.4 207 1-208 162-379 (379)
11 PRK12479 branched-chain amino 100.0 3.1E-43 6.7E-48 304.1 24.1 195 1-200 88-289 (299)
12 PRK13356 aminotransferase; Pro 100.0 2.5E-42 5.5E-47 296.6 23.8 189 1-196 92-283 (286)
13 PRK08320 branched-chain amino 100.0 3E-42 6.5E-47 296.3 23.4 191 2-197 88-285 (288)
14 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 5.9E-42 1.3E-46 289.0 22.4 186 1-191 65-256 (256)
15 PRK07544 branched-chain amino 100.0 9E-42 1.9E-46 294.0 23.1 191 1-199 93-290 (292)
16 PRK07650 4-amino-4-deoxychoris 100.0 1.2E-41 2.6E-46 292.0 22.7 191 1-197 84-277 (283)
17 PRK06092 4-amino-4-deoxychoris 100.0 1.9E-41 4.1E-46 288.5 21.7 184 2-193 78-267 (268)
18 COG0115 IlvE Branched-chain am 100.0 3.8E-41 8.2E-46 289.2 21.9 191 1-198 87-283 (284)
19 cd01559 ADCL_like ADCL_like: 4 100.0 4E-41 8.6E-46 283.7 19.8 182 2-191 65-249 (249)
20 cd01558 D-AAT_like D-Alanine a 100.0 1.1E-40 2.5E-45 283.8 21.3 182 2-191 83-270 (270)
21 PRK12400 D-amino acid aminotra 100.0 2.7E-40 5.8E-45 284.6 22.6 185 2-195 93-282 (290)
22 PLN02845 Branched-chain-amino- 100.0 2.6E-40 5.7E-45 290.0 22.8 190 2-198 126-325 (336)
23 PRK06680 D-amino acid aminotra 100.0 3.7E-40 7.9E-45 283.3 22.9 187 2-197 88-283 (286)
24 PRK09266 hypothetical protein; 100.0 1E-39 2.2E-44 277.8 23.2 180 1-193 80-260 (266)
25 TIGR03461 pabC_Proteo aminodeo 100.0 5.5E-40 1.2E-44 278.4 20.8 179 2-188 76-260 (261)
26 PRK07849 4-amino-4-deoxychoris 100.0 1.5E-39 3.2E-44 280.4 22.1 181 2-195 98-288 (292)
27 TIGR01121 D_amino_aminoT D-ami 100.0 5.2E-39 1.1E-43 274.8 22.1 183 2-193 85-273 (276)
28 PF01063 Aminotran_4: Aminotra 100.0 2.9E-38 6.3E-43 262.2 19.7 181 2-191 45-231 (231)
29 PRK07546 hypothetical protein; 100.0 7.5E-34 1.6E-38 233.9 16.4 148 2-167 60-209 (209)
30 PRK07101 hypothetical protein; 99.9 3E-24 6.5E-29 174.1 14.1 107 37-161 81-187 (187)
31 PF15507 DUF4649: Domain of un 68.9 15 0.00032 25.1 4.7 53 137-189 11-65 (72)
32 cd01712 ThiI ThiI is required 43.0 35 0.00075 26.7 3.7 64 69-139 94-161 (177)
33 COG2257 Uncharacterized homolo 40.3 20 0.00042 25.7 1.6 32 118-149 30-61 (92)
34 PRK06683 hypothetical protein; 39.8 49 0.0011 23.0 3.6 32 121-153 41-72 (82)
35 PF11814 DUF3335: Peptidase_C3 38.9 1.3E+02 0.0028 24.8 6.5 68 68-149 58-125 (207)
36 cd05569 PTS_IIB_fructose PTS_I 36.8 32 0.0007 24.5 2.4 35 125-159 21-64 (96)
37 TIGR00829 FRU PTS system, fruc 35.0 39 0.00085 23.6 2.5 32 127-158 22-62 (85)
38 PF09778 Guanylate_cyc_2: Guan 34.0 56 0.0012 27.1 3.6 26 123-148 93-118 (212)
39 PF13051 DUF3912: Protein of u 33.9 45 0.00098 21.8 2.4 38 96-133 31-68 (68)
40 PF11547 E3_UbLigase_EDD: E3 u 33.0 28 0.00061 21.9 1.3 22 115-136 18-39 (53)
41 PRK13602 putative ribosomal pr 32.8 84 0.0018 21.7 3.9 30 120-150 40-69 (82)
42 PF03683 UPF0175: Uncharacteri 32.4 48 0.001 22.5 2.6 31 115-148 41-71 (76)
43 PRK10474 putative PTS system f 31.1 47 0.001 23.3 2.4 36 123-158 4-48 (88)
44 cd03057 GST_N_Beta GST_N famil 31.0 1E+02 0.0022 20.0 4.1 60 125-189 14-74 (77)
45 cd03041 GST_N_2GST_N GST_N fam 29.0 1.7E+02 0.0037 19.2 5.7 62 124-190 15-76 (77)
46 PF09954 DUF2188: Uncharacteri 26.2 1.3E+02 0.0029 19.2 3.8 26 69-94 34-59 (62)
47 PRK13601 putative L7Ae-like ri 25.9 1.3E+02 0.0028 20.9 3.8 30 120-150 37-66 (82)
48 cd03059 GST_N_SspA GST_N famil 25.0 1.9E+02 0.0041 18.3 4.9 58 124-189 14-71 (73)
49 COG0695 GrxC Glutaredoxin and 24.8 1.7E+02 0.0037 19.8 4.3 48 125-174 17-64 (80)
50 PRK01018 50S ribosomal protein 23.6 1.5E+02 0.0033 21.1 4.0 33 118-150 43-75 (99)
51 PRK08349 hypothetical protein; 22.8 97 0.0021 24.8 3.2 60 69-134 96-158 (198)
52 PF14894 Lsm_C: Lsm C-terminal 22.7 81 0.0018 21.0 2.1 19 179-197 43-61 (64)
53 TIGR00789 flhB_rel flhB C-term 22.2 84 0.0018 21.9 2.3 25 118-142 25-49 (82)
54 COG1445 FrwB Phosphotransferas 22.2 82 0.0018 23.8 2.4 33 124-156 23-64 (122)
55 PTZ00106 60S ribosomal protein 21.9 1.6E+02 0.0035 21.5 3.9 32 118-149 52-83 (108)
56 cd03079 GST_N_Metaxin2 GST_N f 21.6 2.5E+02 0.0054 19.0 4.6 58 106-174 2-61 (74)
57 PRK10638 glutaredoxin 3; Provi 21.1 2.1E+02 0.0047 19.0 4.3 48 123-174 16-63 (83)
58 PRK15007 putative ABC transpor 21.0 1.5E+02 0.0033 23.7 4.1 35 114-148 40-74 (243)
59 PF04322 DUF473: Protein of un 20.9 40 0.00086 25.4 0.5 60 115-174 4-76 (119)
60 cd01990 Alpha_ANH_like_I This 20.6 65 0.0014 25.6 1.7 62 69-136 86-148 (202)
61 cd03045 GST_N_Delta_Epsilon GS 20.6 1.9E+02 0.0042 18.4 3.8 49 124-174 14-62 (74)
62 PF11739 DctA-YdbH: Dicarboxyl 20.1 1.2E+02 0.0026 24.6 3.2 61 90-165 31-94 (207)
63 PF04361 DUF494: Protein of un 20.0 61 0.0013 25.4 1.4 33 113-149 92-124 (155)
No 1
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=7.1e-50 Score=356.90 Aligned_cols=210 Identities=62% Similarity=1.039 Sum_probs=194.2
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
+||||+++|+++.+|+.++.+++++|++.|.++++. +++++.++++++|..|..++++|+++||+++++++++|+++
T Consensus 188 lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~ 267 (403)
T PLN02782 188 LYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAK 267 (403)
T ss_pred EEEEEEEEecCCCcCcCCCCCcEEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHc
Confidence 599999998888889988888999999999887654 46778777568898888899999988999999999999999
Q ss_pred CCCeEEEEc--CCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 78 GFTDVLFLN--AEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 78 g~deal~ld--~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
|+||+||+| ++|+|+|++++|+|++++++|+||+++.++|+||||+.||++|+++|++|+|++++++||.+|||+|+|
T Consensus 268 G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~t 347 (403)
T PLN02782 268 GYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCT 347 (403)
T ss_pred CCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEc
Confidence 999999999 479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeec-CCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343 156 GTAVGVNSVNSITYQDERIEYK-RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~-~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 210 (210)
||+.+|+||.+|+++|+.+.+. ++.||++++|++.|.++|+|+.+|+++|+.+|+
T Consensus 348 gTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~~iq~G~~~~~~~W~~~v~ 403 (403)
T PLN02782 348 GTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS 403 (403)
T ss_pred cCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCeEECC
Confidence 9999999999998788887443 457999999999999999999999999999885
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=5.5e-50 Score=356.05 Aligned_cols=210 Identities=61% Similarity=1.036 Sum_probs=191.8
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcCCc---eEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL---LNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g---~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
+||||+++|+++.+|++++.+++++++++|.++++.+| +++.+++++.|..|..++++|+.+||+++++++++|+++
T Consensus 174 lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~ 253 (388)
T PLN02259 174 LYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSR 253 (388)
T ss_pred EEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHc
Confidence 59999999887778998877899999999998776544 456665567898888899999988999999999999999
Q ss_pred CCCeEEEEcC--CCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 78 GFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 78 g~deal~ld~--~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
||||+||+|. +|+|+|++++|+|++++++|+||+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|
T Consensus 254 G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~t 333 (388)
T PLN02259 254 GFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCT 333 (388)
T ss_pred CCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEc
Confidence 9999999997 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343 156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 210 (210)
||+.+|+||.+|++.++.+.++++.||++++|+++|.+||+|+.+|+++|+.+|.
T Consensus 334 gTa~~V~PV~~I~~~~~~~~~~~~~g~~t~~L~~~l~~iq~G~~~~~~~W~~~~~ 388 (388)
T PLN02259 334 GTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388 (388)
T ss_pred CCcceEEEEEEEecCCceEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCCCeEECC
Confidence 9999999999998766665555456899999999999999999999999999873
No 3
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=9.9e-50 Score=353.80 Aligned_cols=209 Identities=61% Similarity=0.971 Sum_probs=190.5
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
+||||+++|+++.+|+.++.+++++|+++|.++++. +++++.+++.++|..+..++++|+.+||+++++++++|+++
T Consensus 170 lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~ 249 (384)
T PLN02883 170 LYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSR 249 (384)
T ss_pred EEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHC
Confidence 599999999888889988788999999999987765 35777776556888888999999988999999999999999
Q ss_pred CCCeEEEEcCC--CcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 78 GFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 78 g~deal~ld~~--g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
||||+||+|.+ |+|+|++++|+|++++++|+||+++.++|+||||+.||++|+++|++|+|++++++||.+|||+|+|
T Consensus 250 G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~t 329 (384)
T PLN02883 250 GFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCT 329 (384)
T ss_pred CCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeec
Confidence 99999999965 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343 156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 209 (210)
||+.+|+||.+|++.++.+.+..+.||++++|++.|.+||+|+.+|+++|+.+|
T Consensus 330 gTa~~I~PV~~I~~~~~~~~~~~~~G~vt~~L~~~l~~iq~G~~~d~~~W~~~~ 383 (384)
T PLN02883 330 GTAAGVASVGSITFKNTRTEYKVGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI 383 (384)
T ss_pred cChhheEEEEEEeccCceeecccCCCHHHHHHHHHHHHHHcCCCCCCCCCeEeC
Confidence 999999999999866554422333589999999999999999999999999987
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=3.5e-48 Score=341.93 Aligned_cols=210 Identities=61% Similarity=1.023 Sum_probs=188.8
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC--CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK--GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKG 78 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~--~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g 78 (210)
+||||+++|+++.+|+.+++++.+++++.|.++++. +|+++.+++.++|..++.++++|+++||+++++++++|+++|
T Consensus 138 ~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G 217 (355)
T PLN03117 138 LYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSG 217 (355)
T ss_pred EEEEEEEEEecCccCcCCCCCcEEEEEEEeccccccCCCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCC
Confidence 499999998776778887667888999998865432 789988765577888888999999669999999999999999
Q ss_pred CCeEEEEcCC--CcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcc
Q 028343 79 FTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTG 156 (210)
Q Consensus 79 ~deal~ld~~--g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tn 156 (210)
+||+||+|.+ |+|+|++++|||+++|++|+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+||
T Consensus 218 ~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltn 297 (355)
T PLN03117 218 FSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTG 297 (355)
T ss_pred CCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEcc
Confidence 9999999974 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343 157 TAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210 (210)
Q Consensus 157 s~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 210 (210)
|+.+|+||.+|++.++.+.+....+|+|++|+++|.++++|+.+|.++|+++|+
T Consensus 298 T~~~I~PV~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~W~~~v~ 351 (355)
T PLN03117 298 TAVVVKAVETVTFHDKKVKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351 (355)
T ss_pred CcceEEEEEEEEecCceEEeCCCCChHHHHHHHHHHHHhCCCCCCCCCCEEEcc
Confidence 999999999998765555554345899999999999999999999999999873
No 5
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=4.1e-47 Score=328.00 Aligned_cols=205 Identities=35% Similarity=0.570 Sum_probs=183.7
Q ss_pred CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc-----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHH
Q 028343 1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH-----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIA 72 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~-----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~ 72 (210)
.|||++++++.+++|+.++ .+|++++++.|++.++ .+|+++.++ +++|..+..+ +++||+|||+.++++++
T Consensus 86 ~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K~~~~yl~~v~a~~ 164 (298)
T TIGR01122 86 AYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAKAGGNYLNSLLAKS 164 (298)
T ss_pred EEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccchhhhhhHHHHHHHH
Confidence 4899999988888898864 3688899998875432 369999887 5677766654 89999866999999999
Q ss_pred HHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhh
Q 028343 73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEV 152 (210)
Q Consensus 73 ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~ 152 (210)
+|+++|+||+||+|++|+|+|++++|+|+++||+|+||+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+
T Consensus 165 ~a~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adev 244 (298)
T TIGR01122 165 EARRHGYDEAILLDVEGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEA 244 (298)
T ss_pred HHHHcCCCEEEEECCCCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343 153 FCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209 (210)
Q Consensus 153 f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 209 (210)
|+|||++||+||++|+ ++.++ ++++||++++|++.|.+.+++..+|.++|+..|
T Consensus 245 fltns~~gv~PV~~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 298 (298)
T TIGR01122 245 FFTGTAAEITPIREVD--GRKIG-NGRRGPVTKKLQEAFFDLVTGGTEDYWGWLTYV 298 (298)
T ss_pred EEcCCcceEEEEEEEC--CEECC-CCCCChHHHHHHHHHHHHHcCCCCCcCCCceeC
Confidence 9999999999999995 67753 456899999999999999999888999998764
No 6
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=4.9e-46 Score=323.39 Aligned_cols=209 Identities=44% Similarity=0.771 Sum_probs=183.4
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcCC---ceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~---g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
+|||++++++++.+|+.+++.+++++++.|+++++.. ++++..+..+.|..+..++++||..||+.+++|+++|+++
T Consensus 94 ~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~ 173 (313)
T TIGR01123 94 LYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQ 173 (313)
T ss_pred EEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHC
Confidence 4899999988777888876678889999887654443 4466554456777776689999955999999999999999
Q ss_pred CCCeEEEEcCCCc--EEEeCceEEEEEEC-CEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhh----h
Q 028343 78 GFTDVLFLNAEKY--IEEVSTSNIFLVKG-NEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDA----E 150 (210)
Q Consensus 78 g~deal~ld~~g~--v~E~~~sNlf~~~~-~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~a----d 150 (210)
|+||+||+|++|+ |+|++++|+|++++ |+|+|||++.++|+||||+.|+++|+++|++|+|++++++||.+| |
T Consensus 174 g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~d 253 (313)
T TIGR01123 174 GCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGE 253 (313)
T ss_pred CCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCC
Confidence 9999999999977 99999999999985 799999999999999999999999999999999999999999999 9
Q ss_pred hhhhcccccceEEEEEEEecCeEEee-cCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343 151 EVFCTGTAVGVNSVNSITYQDERIEY-KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209 (210)
Q Consensus 151 e~f~tns~~gi~pV~~I~~~~~~i~~-~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 209 (210)
|+|+|||+.||+||++|+++++.+.+ .+++||++++|++.|.++++|+.++..+|+++|
T Consensus 254 evfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 313 (313)
T TIGR01123 254 EVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313 (313)
T ss_pred EEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCeeeC
Confidence 99999999999999999656765433 346899999999999999999888999999986
No 7
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=5e-46 Score=322.45 Aligned_cols=205 Identities=34% Similarity=0.524 Sum_probs=182.5
Q ss_pred CeEEEEEEecCCCcCcCCC-CCcEEEEEEEecCCCc-----CCceEEEEEeeeeecCCCC-CCCCccccChHHHHHHHHH
Q 028343 1 MYIRPLLMGSGPVLGVAPA-SEYTFITYASPVGNYH-----KGLLNLIVEEKFRRAIPGG-TGGVKAVTNYAIIYKPIAE 73 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~-----~~g~~~~~~~~~~r~~~~~-l~~~K~~~~y~~~~~a~~e 73 (210)
.|||++++++.+++|+.+. ..+++++++.|+++++ .+|+++.++ +++|..++. ++++|++.||+.+++++++
T Consensus 95 ~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~e 173 (306)
T PRK06606 95 AYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAKASGNYLNSILAKTE 173 (306)
T ss_pred EEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchhhhhccHHHHHHHHH
Confidence 4899999988878888765 3678888888866432 269999877 466766654 5889976699999999999
Q ss_pred HHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343 74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVF 153 (210)
Q Consensus 74 a~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f 153 (210)
|+++|+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.++++|+++|++|+|++++++||.+|||+|
T Consensus 174 a~~~G~de~l~l~~~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~Adevf 253 (306)
T PRK06606 174 ARRNGYDEALLLDVEGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVF 253 (306)
T ss_pred HHHcCCCEEEEECCCCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343 154 CTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209 (210)
Q Consensus 154 ~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~ 209 (210)
+|||++||+||++|+ ++.++ ++++||++++|+++|.+.+.++.+|+.+|+.++
T Consensus 254 ltnS~~gi~PV~~id--~~~~~-~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
T PRK06606 254 FTGTAAEVTPIREVD--GRQIG-NGKRGPITEKLQSAYFDIVRGRTEKYAHWLTPV 306 (306)
T ss_pred EcCCcceEEEEEEEC--cEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCCcccC
Confidence 999999999999995 77753 456899999999999999999888999998764
No 8
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=4.2e-46 Score=328.97 Aligned_cols=209 Identities=44% Similarity=0.768 Sum_probs=185.7
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
+|||++++++.+.+|+.+..++++++++.|+++++. +|+++.+++.+.|..++.++++|+..||+.+++|++||+++
T Consensus 135 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~ 214 (356)
T PRK13357 135 LYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEK 214 (356)
T ss_pred EEEEEEEEccCCcccccCCCccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHC
Confidence 489999998877788876667899999998765433 57888766467787777789999944999999999999999
Q ss_pred CCCeEEEEcC--CCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHH------Hhhh
Q 028343 78 GFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEE------LFDA 149 (210)
Q Consensus 78 g~deal~ld~--~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~e------l~~a 149 (210)
|+||+||+|. +|+|+|++++|+|++++++++|||++.++|+||||+.|+++|+++|++|+|++++++| |.+|
T Consensus 215 G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~A 294 (356)
T PRK13357 215 GCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEF 294 (356)
T ss_pred CCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcc
Confidence 9999999994 7999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred hhhhhcccccceEEEEEEEecC--eEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343 150 EEVFCTGTAVGVNSVNSITYQD--ERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210 (210)
Q Consensus 150 de~f~tns~~gi~pV~~I~~~~--~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~ 210 (210)
||+|+|||+.||+||++|++++ +.++ .+++||++++|+++|.+.++|+.+++.+|+++||
T Consensus 295 devFltnS~~gi~PV~~id~~~~~~~~~-~g~~g~~t~~L~~~~~~~~~~~~~~~~~w~~~~~ 356 (356)
T PRK13357 295 TEAFACGTAAVITPIGGIKYKDKEFVIG-DGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKVD 356 (356)
T ss_pred eEEEEcccccEEEEEEEEEeCCCEEEcC-CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEeCc
Confidence 9999999999999999997432 3432 4568999999999999999999899999999986
No 9
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=3.6e-44 Score=307.20 Aligned_cols=193 Identities=48% Similarity=0.802 Sum_probs=173.1
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
.|||++++++.+.+|+.++.+|++++++.|+++++. +|+++.++ +++|..+..++.+|+..||+.+++++++|+++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 389999998877788876667889999998876543 79999887 57787775667899755999999999999999
Q ss_pred CCCeEEEEcCC-CcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcc
Q 028343 78 GFTDVLFLNAE-KYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTG 156 (210)
Q Consensus 78 g~deal~ld~~-g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tn 156 (210)
|+||+||+|++ |+|+|++++|+|++++++|+||+++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+||
T Consensus 160 g~de~l~ld~~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~n 239 (279)
T cd01557 160 GYDQALWLDGAHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATG 239 (279)
T ss_pred CCCEEEEEcCCCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEec
Confidence 99999999999 99999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEEecCeEE--eecCCccHHHHHHHHHHHHhHcc
Q 028343 157 TAVGVNSVNSITYQDERI--EYKRGAGTVGQKLYEMVTGIQTG 197 (210)
Q Consensus 157 s~~gi~pV~~I~~~~~~i--~~~~~~g~~t~~L~~~~~~~~~g 197 (210)
|+.||+||++|+ ++.+ + .+++||++++|++.|.++++|
T Consensus 240 s~~gi~pV~~i~--~~~~~~~-~~~~gp~~~~l~~~~~~~~~~ 279 (279)
T cd01557 240 TAAVVTPVGEID--YRGKEPG-EGEVGPVTKKLYDLLTDIQYG 279 (279)
T ss_pred ceeEEEEEEEEc--cccccCC-CCCCCHHHHHHHHHHHHHhcC
Confidence 999999999995 6664 2 356899999999999998775
No 10
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=311.10 Aligned_cols=207 Identities=54% Similarity=0.848 Sum_probs=193.6
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
|||||++.|++...|.++.++++++++++|..+|++ +|+++.+.+.++|+.|...++.|+++||+++++++.||+.+
T Consensus 162 Lyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~ 241 (379)
T KOG0975|consen 162 LYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSK 241 (379)
T ss_pred EEEeeeeccCCcccccccCCcceEEEEEcccchhccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhc
Confidence 699999999999999999999999999999999887 68899888889999999999999999999999999999999
Q ss_pred CCCeEEEEcCCC-cEEEeCceEEEEEECCE--EEccCCCCCCcccchHHHHHHHHHHcC-CcEEEEecCHHHHhhhhhhh
Q 028343 78 GFTDVLFLNAEK-YIEEVSTSNIFLVKGNE--ISTPPTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDAEEVF 153 (210)
Q Consensus 78 g~deal~ld~~g-~v~E~~~sNlf~~~~~~--l~TP~l~~~~L~GitR~~vl~~a~~~g-i~v~e~~i~~~el~~ade~f 153 (210)
||.++||||.++ +|+|.++.|+|++++|. ++||+++..|||||||+.++++|++.| ++|+||.++++|+.+|+|+|
T Consensus 242 G~~dvLwL~~d~~~ItEv~tmNiF~v~~n~~elvTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf 321 (379)
T KOG0975|consen 242 GASDVLWLDGDGGYITEVGTMNIFMVKKNEDELVTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVF 321 (379)
T ss_pred CcceeEEEecCCCceeeccceeEEEEEcCceeEecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhh
Confidence 999999999886 99999999999999998 999999999999999999999999999 99999999999999999999
Q ss_pred hcccccceEEEEEEEecC---eEEeec-CCccHHHHHHHHHHHHhHccCCCCCCCCeEe
Q 028343 154 CTGTAVGVNSVNSITYQD---ERIEYK-RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVE 208 (210)
Q Consensus 154 ~tns~~gi~pV~~I~~~~---~~i~~~-~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~ 208 (210)
.|+|+..|-||..|.+.+ +.-.+. |+.||++++|++.+.+||+|. +++.+|+++
T Consensus 322 ~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~~~l~~~l~~iq~g~-~~~~~w~~~ 379 (379)
T KOG0975|consen 322 CTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLAKKLLSTLTDIQYGR-EPKKGWTVP 379 (379)
T ss_pred cccceeeeccccceeecccccceeecCCCCccHHHHHHHHHHHHhhcCC-cCCCCcccC
Confidence 999999999999999877 222233 458999999999999999999 889999874
No 11
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=3.1e-43 Score=304.13 Aligned_cols=195 Identities=29% Similarity=0.405 Sum_probs=173.0
Q ss_pred CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHHH
Q 028343 1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIAE 73 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~e 73 (210)
.|||++++++.+.+|+.+. .+|++++++.|++.++ .+|+++.++ .++|..++.+ +.+||+ ||+.+++++++
T Consensus 88 ~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~K~~-nyl~~vla~~e 165 (299)
T PRK12479 88 AYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRIKSM-NYLNNVLVKIE 165 (299)
T ss_pred eEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccchhh-hhHHHHHHHHH
Confidence 3899999988788888765 3678999999875432 378988776 4677666655 699996 99999999999
Q ss_pred HHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343 74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVF 153 (210)
Q Consensus 74 a~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f 153 (210)
|+++|+||+||+|++|+|+|++++|+|++++++|+||+++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|
T Consensus 166 a~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevf 245 (299)
T PRK12479 166 AAQAGVLEALMLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVF 245 (299)
T ss_pred HHHcCCCEEEEEcCCCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCC
Q 028343 154 CTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIE 200 (210)
Q Consensus 154 ~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~ 200 (210)
+|||++||+||++|+ ++.++ .+++||++++|+++|.+..++...
T Consensus 246 ltnS~~gi~PV~~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~~ 289 (299)
T PRK12479 246 LTGTAAELIPVVKVD--SREIG-DGKPGSVTKQLTEEFKKLTRERGV 289 (299)
T ss_pred eecCcccEEEEEEEC--CEEcC-CCCcCHHHHHHHHHHHHHHhhcCC
Confidence 999999999999995 77753 557899999999999887776543
No 12
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=2.5e-42 Score=296.65 Aligned_cols=189 Identities=29% Similarity=0.428 Sum_probs=161.1
Q ss_pred CeEEEEEEecCCCc-CcCCCC-CcEEEEEEEecCCCcCCceEEEEEeeeeecCCCC-CCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVL-GVAPAS-EYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGG-TGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~-g~~~~~-~~~~~i~~~p~~~~~~~g~~~~~~~~~~r~~~~~-l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
.|||++++++.+.+ |+.+++ .+.+++.+.+.+....+|+++.++ +++|..+.. .+++|+++||+.+++++++|+++
T Consensus 92 ~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~ 170 (286)
T PRK13356 92 LYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLS-PFRRPTLEMAPTDAKAGCLYPNNARALREARSR 170 (286)
T ss_pred EEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCCCcEEEEEe-eeecCCCCCCCccceeccchHHHHHHHHHHHHc
Confidence 38999999775544 444432 455566666554322379999887 567766554 36789777999999999999999
Q ss_pred CCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccc
Q 028343 78 GFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGT 157 (210)
Q Consensus 78 g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns 157 (210)
|+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.|+++|++.|++|+|++++++||.+|||+|+|||
T Consensus 171 g~deal~ld~~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns 250 (286)
T PRK13356 171 GFDNALVLDMLGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGN 250 (286)
T ss_pred CCCEEEEECCCCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHc
Q 028343 158 AVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQT 196 (210)
Q Consensus 158 ~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~ 196 (210)
+.||+||++|+ ++.+ ++||++++|+++|.+..+
T Consensus 251 ~~gi~PV~~id--~~~~----~~g~~~~~l~~~~~~~~~ 283 (286)
T PRK13356 251 YSKVVPVTRFD--DRSL----QPGPVTRRARELYWDWAH 283 (286)
T ss_pred hheEEEEEEEC--CEEe----cCChHHHHHHHHHHHHHh
Confidence 99999999995 6764 368999999999987544
No 13
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3e-42 Score=296.29 Aligned_cols=191 Identities=34% Similarity=0.505 Sum_probs=168.1
Q ss_pred eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIAEA 74 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~ea 74 (210)
|||++++++.+.+|+.++ .+|.+++++.|+++++ .+|+++.++ .++|..++.+ +++|++ ||+.+++++++|
T Consensus 88 ~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~r~~~~~~~~~~K~~-nyl~~v~a~~~A 165 (288)
T PRK08320 88 YIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITV-STRRNRPDALSPQVKSL-NYLNNILAKIEA 165 (288)
T ss_pred EEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEE-eeeccCCCCcCccchhh-hhHHHHHHHHHH
Confidence 799999988778888765 3577888888765433 278988776 4567665544 789996 999999999999
Q ss_pred HHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhh
Q 028343 75 KAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFC 154 (210)
Q Consensus 75 ~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~ 154 (210)
+++|+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.+++++++.|++|+|+.++++||.+|||+|+
T Consensus 166 ~~~g~de~L~ld~~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~ 245 (288)
T PRK08320 166 NLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFL 245 (288)
T ss_pred HHcCCCEEEEECCCCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHcc
Q 028343 155 TGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTG 197 (210)
Q Consensus 155 tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g 197 (210)
|||++||+||++|+ ++.++ .+++||++++|++.|.+....
T Consensus 246 ~ns~~gv~pV~~i~--~~~~~-~~~~g~~~~~l~~~~~~~~~~ 285 (288)
T PRK08320 246 TGTAAEVIPVVKVD--GRVIG-DGKPGPITKKLLEEFRELTKK 285 (288)
T ss_pred ecChhhEEEEEEEC--CEECC-CCCcCHHHHHHHHHHHHHHhh
Confidence 99999999999995 66653 456899999999999876543
No 14
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=5.9e-42 Score=289.00 Aligned_cols=186 Identities=45% Similarity=0.689 Sum_probs=164.0
Q ss_pred CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCC---cCCceEEEEEeeeeec-CCCCCCCCccccChHHHHHHHHHH
Q 028343 1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY---HKGLLNLIVEEKFRRA-IPGGTGGVKAVTNYAIIYKPIAEA 74 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~---~~~g~~~~~~~~~~r~-~~~~l~~~K~~~~y~~~~~a~~ea 74 (210)
.|||+.++++.+.+|+.++ .+|++++++.|++++ +.+|+++.+++. .+. .++.++++|++ ||+.+++++++|
T Consensus 65 ~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a 142 (256)
T cd00449 65 LYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEA 142 (256)
T ss_pred EEEEEEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHH
Confidence 3799999988777888654 578999998888653 347999988744 443 45578999997 789999999999
Q ss_pred HHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhh
Q 028343 75 KAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFC 154 (210)
Q Consensus 75 ~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~ 154 (210)
+++|+||+||+|++|+|+|++++|+|++++|+|+||+++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+
T Consensus 143 ~~~g~de~llld~~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl 222 (256)
T cd00449 143 AEAGADEALLLDDNGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFL 222 (256)
T ss_pred HHcCCCEEEEECCCCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343 155 TGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV 191 (210)
Q Consensus 155 tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~ 191 (210)
|||++||+||++|+ ++.++ .+.+||++++|+++|
T Consensus 223 ~ns~~gv~pV~~i~--~~~~~-~~~~~~~~~~l~~~~ 256 (256)
T cd00449 223 TGTAAEVTPVTEID--GRGIG-DGKPGPVTRKLRELL 256 (256)
T ss_pred ccccceEEEEEEEC--CeecC-CCCCCHHHHHHHHhC
Confidence 99999999999995 66652 356899999998865
No 15
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=9e-42 Score=294.01 Aligned_cols=191 Identities=32% Similarity=0.466 Sum_probs=164.9
Q ss_pred CeEEEEEEecCCCcCcCCCC-CcEEEEEEEecCCCc-----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHHH
Q 028343 1 MYIRPLLMGSGPVLGVAPAS-EYTFITYASPVGNYH-----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIAE 73 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~-----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~e 73 (210)
.|||++++++.+.+|+.++. .+.++++..|+++++ .+|+++.++ .++|..+..+ ..+|+.+||+.+++++++
T Consensus 93 ~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~k~~~~yl~~vla~~~ 171 (292)
T PRK07544 93 AYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAAKAAGLYMICTISKHA 171 (292)
T ss_pred eEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhhhhhcccHHHHHHHHH
Confidence 38999999888778887654 466777766654322 268999877 4677666544 567887799999999999
Q ss_pred HHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343 74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVF 153 (210)
Q Consensus 74 a~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f 153 (210)
|+++|+||+||+|++|+|+|++++|+|+++||+|+||+++ ++|+||||+.|+++|+++|++|+|++++++||.+|||+|
T Consensus 172 A~~~G~deal~ld~~g~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf 250 (292)
T PRK07544 172 AEAKGYADALMLDYRGYVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECF 250 (292)
T ss_pred HHHcCCCeEEEECCCCCEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCcee
Confidence 9999999999999999999999999999999999999985 599999999999999999999999999999999999999
Q ss_pred hcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCC
Q 028343 154 CTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRI 199 (210)
Q Consensus 154 ~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~ 199 (210)
+|||++||+||++|+ ++.+ ++||++++|++.|.+..+++.
T Consensus 251 ltnS~~gi~PV~~i~--~~~~----~~g~~~~~l~~~~~~~~~~~~ 290 (292)
T PRK07544 251 LTGTAAEVTPVSEIG--EYRF----TPGAITRDLMDDYEALVRPRA 290 (292)
T ss_pred ecCccceEEEEEEEe--eEEe----CCChHHHHHHHHHHHHHhccc
Confidence 999999999999995 6654 378999999999988776653
No 16
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.2e-41 Score=291.97 Aligned_cols=191 Identities=28% Similarity=0.353 Sum_probs=164.8
Q ss_pred CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCcC-CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYHK-GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~-~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
.|||++++++.+.+|+.++ ..|+++++..|+++... .......+ ..+|..++.++++|++ ||+.+++++++|+++
T Consensus 84 ~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Kt~-~y~~~v~a~~~a~~~ 161 (283)
T PRK07650 84 AYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL-KQRRNTPEGAFRLKSH-HYLNNILGKREIGND 161 (283)
T ss_pred EEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE-EEEecCCCCCcchhHH-hHHHHHHHHHHHHHc
Confidence 3899999988777787654 46889999998754322 22222222 3556666678999996 999999999999999
Q ss_pred CCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccc
Q 028343 78 GFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGT 157 (210)
Q Consensus 78 g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns 157 (210)
|+||+||+|++|+|+|++++|||++++|+|+||+++.|+|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||
T Consensus 162 g~de~llln~~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns 241 (283)
T PRK07650 162 PNKEGIFLTEEGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241 (283)
T ss_pred CCCeEEEECCCCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHcc
Q 028343 158 AVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTG 197 (210)
Q Consensus 158 ~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g 197 (210)
++|++||++|+ ++.+ .+++||++++|+++|.+...+
T Consensus 242 ~~gv~pV~~i~--~~~~--~g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 242 IQEIVPLTRIE--ERDF--PGKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred cccEEEEEEEC--CEEe--CCCCCHHHHHHHHHHHHHHHh
Confidence 99999999995 6764 567899999999999876554
No 17
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=1.9e-41 Score=288.49 Aligned_cols=184 Identities=24% Similarity=0.290 Sum_probs=162.4
Q ss_pred eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK 75 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~ 75 (210)
+||+.++++.+++|+.++ .+|.+++++.|+++++ .+|+++.++ +.++..++.++++|++ ||+.+++++++|+
T Consensus 78 ~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~A~ 155 (268)
T PRK06092 78 VLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALC-PTRLGRNPLLAGIKHL-NRLEQVLIRAELE 155 (268)
T ss_pred EEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEe-ccccCCCCCccCcchh-hhHHHHHHHHHHH
Confidence 799999987777788765 3568888888876543 278998876 4455555567899996 9999999999999
Q ss_pred HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
++|+||+||+|++|+|+|++++|+|+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|
T Consensus 156 ~~g~de~l~l~~~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevflt 235 (268)
T PRK06092 156 QTEADEALVLDSEGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFIC 235 (268)
T ss_pred hcCCCEEEEECCCCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEe
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343 156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG 193 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~ 193 (210)
||++||+||.+|+ ++.+ ++||++++|+++|..
T Consensus 236 ns~~gi~pV~~id--~~~~----~~g~~~~~l~~~~~~ 267 (268)
T PRK06092 236 NSLMPVWPVRAIG--ETSY----SSGTLTRYLQPLCER 267 (268)
T ss_pred CCcceEEEEEEEC--CEEc----cchHHHHHHHHHHhc
Confidence 9999999999995 6664 368999999998864
No 18
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.8e-41 Score=289.17 Aligned_cols=191 Identities=45% Similarity=0.667 Sum_probs=170.0
Q ss_pred CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC-----CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343 1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-----GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK 75 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~-----~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~ 75 (210)
+|+||+++++++.+|+.+..++.+.++++|+++++. +|+.+.+++.+++..++....+|+ .||+.+++++++|+
T Consensus 87 ~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~-~~y~~~~~a~~~A~ 165 (284)
T COG0115 87 LYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKT-GNYLSSVLAKREAK 165 (284)
T ss_pred eEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhh-cccHHHHHHHHHHH
Confidence 699999999888888888668899999999998765 365666554555544443556887 49999999999999
Q ss_pred HCCCCeEEEEcCCCcEEEeCceEEEEEE-CCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhh
Q 028343 76 AKGFTDVLFLNAEKYIEEVSTSNIFLVK-GNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFC 154 (210)
Q Consensus 76 ~~g~deal~ld~~g~v~E~~~sNlf~~~-~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~ 154 (210)
++|+||+|++|.+|+|+|++++|+|+++ ||+++||+++.++|+||||+.+|++|+++|++++|++++.+||.+|||+|+
T Consensus 166 ~~G~~eal~~~~~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~ 245 (284)
T COG0115 166 AAGADEALLLDEDGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFL 245 (284)
T ss_pred HCCCCEEEEecCCCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEE
Confidence 9999999999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccC
Q 028343 155 TGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGR 198 (210)
Q Consensus 155 tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~ 198 (210)
|||+.+|+||.+|+ ++ . +++||+|++|+++|.+++++.
T Consensus 246 t~t~~~v~PV~~i~--~~-~---~~~gpit~~l~~~~~~~~~~~ 283 (284)
T COG0115 246 TNTAAGVTPVGLID--GR-V---GQPGPVTKKLRELLTDIQYGE 283 (284)
T ss_pred EccceEEEEEEEEC--Cc-c---CCCChHHHHHHHHHHHHhccC
Confidence 99999999999994 44 2 579999999999999998875
No 19
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=4e-41 Score=283.72 Aligned_cols=182 Identities=30% Similarity=0.445 Sum_probs=161.7
Q ss_pred eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCC-CcCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCC
Q 028343 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGN-YHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKG 78 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~-~~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g 78 (210)
|||++++++.+.+|+.++ .+|++++++.|++. .+.+|+++.++ +++|..++.++++|++ ||+.+++++++|+++|
T Consensus 65 ~ir~~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g 142 (249)
T cd01559 65 RIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRG 142 (249)
T ss_pred EEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCHHHHhCCcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcC
Confidence 799999977666777654 46788888888754 22379998877 4667667789999996 9999999999999999
Q ss_pred CCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccc
Q 028343 79 FTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTA 158 (210)
Q Consensus 79 ~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~ 158 (210)
+||+||+|++|+|+|++++|+|++++|+|+||+++.++|+||||+.++++++++|++++|+.++++||.+|||+|+|||+
T Consensus 143 ~de~l~l~~~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~ 222 (249)
T cd01559 143 ADEALFLDTDGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSL 222 (249)
T ss_pred CCEEEEEcCCCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343 159 VGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV 191 (210)
Q Consensus 159 ~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~ 191 (210)
+||+||++|+ +. .+++||++++|+++|
T Consensus 223 ~gi~pV~~id--~~----~~~~~~~~~~l~~~~ 249 (249)
T cd01559 223 LGVAPVTAID--DH----DGPPGPLTRALRELL 249 (249)
T ss_pred cceeEEEEEC--Cc----ccCccHHHHHHHHhC
Confidence 9999999995 32 346899999999875
No 20
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=1.1e-40 Score=283.75 Aligned_cols=182 Identities=30% Similarity=0.363 Sum_probs=157.2
Q ss_pred eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCC----cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY----HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK 75 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~----~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~ 75 (210)
++|+.++++.+++|+.++ .++++++++.|++++ +.+|+++.++ ..+|. ..+++|++ ||+.+++++++|+
T Consensus 83 ~~~~~~t~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~~~---~~~~~K~~-ny~~~~~a~~~a~ 157 (270)
T cd01558 83 DVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITV-PDIRW---LRCDIKSL-NLLNNVLAKQEAK 157 (270)
T ss_pred eEEEEEEeCCCccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEe-ccccc---CCCCchhh-ccHHHHHHHHHHH
Confidence 567777877667777664 357888888887642 2378988776 34443 34689996 9999999999999
Q ss_pred HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
++|+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|
T Consensus 158 ~~g~de~l~ld~~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ 237 (270)
T cd01558 158 EAGADEAILLDADGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLT 237 (270)
T ss_pred HcCCCEEEEEcCCCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343 156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV 191 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~ 191 (210)
||++||+||++|+ ++.++ .++.||++++|++.|
T Consensus 238 ns~~gv~PV~~i~--~~~~~-~~~~~~~~~~l~~~~ 270 (270)
T cd01558 238 STTAEVMPVVEID--GRPIG-DGKPGPVTKRLREAY 270 (270)
T ss_pred cCcccEEEEEEEC--CeECC-CCCCCHHHHHHHHhC
Confidence 9999999999995 66652 456799999998865
No 21
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.7e-40 Score=284.62 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=157.6
Q ss_pred eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCC---cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY---HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKA 76 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~---~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~ 76 (210)
+||+.++++.+.+|+.++ ..|++++++.+.+.. ..+|+++...++ .+..++++||+ ||+.+++++++|++
T Consensus 93 ~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~Kt~-nyl~~vla~~ea~~ 167 (290)
T PRK12400 93 TIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPD----TRWLRCDIKSL-NLLPNILAATKAER 167 (290)
T ss_pred EEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECCC----CCccCCCCccc-ccHHHHHHHHHHHH
Confidence 799999987766777654 356777776654321 136888765422 12235789996 99999999999999
Q ss_pred CCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcc
Q 028343 77 KGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTG 156 (210)
Q Consensus 77 ~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tn 156 (210)
+|+||+||+| +|+|+|++++|||+++||+|+|||++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+||
T Consensus 168 ~g~deaL~l~-~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltn 246 (290)
T PRK12400 168 KGCKEALFVR-NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTG 246 (290)
T ss_pred cCCCEEEEEc-CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEcc
Confidence 9999999997 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhH
Q 028343 157 TAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQ 195 (210)
Q Consensus 157 s~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~ 195 (210)
|+.||+||++|+ ++.++ ++++||++++|++.|.+..
T Consensus 247 s~~gv~PV~~i~--~~~~~-~~~~g~~t~~l~~~~~~~~ 282 (290)
T PRK12400 247 TTIEILPMTHLD--GTAIQ-DGQVGPITKMLQRSFSQSL 282 (290)
T ss_pred CcceEEEEEEEC--CEECC-CCCcCHHHHHHHHHHHHHH
Confidence 999999999995 67653 5578999999999997643
No 22
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=2.6e-40 Score=289.96 Aligned_cols=190 Identities=24% Similarity=0.307 Sum_probs=163.0
Q ss_pred eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc--CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH--KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK 77 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~--~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~ 77 (210)
+||++++++.+.+++.+. .+|++++++.|.+... .+|+++.++ ++++. ++.++++||+ ||+.+++|+++|+++
T Consensus 126 ~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~gv~l~~~-~~~~~-~~~~~~~Kt~-nyl~~vla~~eA~~~ 202 (336)
T PLN02845 126 SLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTS-SVPIK-PPQFATVKSV-NYLPNALSQMEAEER 202 (336)
T ss_pred EEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccccccCCeEEEEe-eeeec-CCccccchhh-hhHHHHHHHHHHHHc
Confidence 799999987666666544 4678888887654322 378888776 45553 3456889986 999999999999999
Q ss_pred CCCeEEEEcCCCcEEEeCceEEEEEE-CCEEEccCCCCCCcccchHHHHHHHHHHc---C--CcEEEEecCHHHHhhhhh
Q 028343 78 GFTDVLFLNAEKYIEEVSTSNIFLVK-GNEISTPPTSGTILPGITRKSIIEITHVL---G--YQVKERAIPVEELFDAEE 151 (210)
Q Consensus 78 g~deal~ld~~g~v~E~~~sNlf~~~-~~~l~TP~l~~~~L~GitR~~vl~~a~~~---g--i~v~e~~i~~~el~~ade 151 (210)
|+||+||+|++|+|+|++++||||++ ||+|+||+++ ++|+||||+.|+++|+++ | ++|+|+.++++||.+|||
T Consensus 203 G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdE 281 (336)
T PLN02845 203 GAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADE 281 (336)
T ss_pred CCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCE
Confidence 99999999999999999999999885 9999999997 599999999999999986 8 899999999999999999
Q ss_pred hhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccC
Q 028343 152 VFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGR 198 (210)
Q Consensus 152 ~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~ 198 (210)
+|+|||++||+||++|+ ++.++ ++++||++++|+++|.+..++.
T Consensus 282 vFltnS~~gv~PV~~id--~~~~~-~g~~gp~t~~L~~~~~~~~~~~ 325 (336)
T PLN02845 282 MMLIGSGVPVLPIVSWD--GQPIG-DGKVGPITLALHDLLLDDMRSG 325 (336)
T ss_pred EEEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999995 77753 4578999999999998877664
No 23
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3.7e-40 Score=283.29 Aligned_cols=187 Identities=22% Similarity=0.310 Sum_probs=162.4
Q ss_pred eEEEEEEecCCCcCcCCC---CCcEEEEEEEecCCC-----cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPA---SEYTFITYASPVGNY-----HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAE 73 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~---~~~~~~i~~~p~~~~-----~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~e 73 (210)
+||+.++++.+++|+..+ .+|++++++.|++++ +.+|+++.+++. .| ..++++||+ ||+.+++++++
T Consensus 88 ~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~~Ks~-nyl~~vla~~e 162 (286)
T PRK06680 88 LVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPD-NR---WKRCDIKSV-GLLPNVLAKQA 162 (286)
T ss_pred EEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecC-CC---CCCCCcchh-ccHHHHHHHHH
Confidence 789999987766777632 468899999987642 237888776532 22 235689997 89999999999
Q ss_pred HHHCCCCeEEEEcCCCcEEEeCceEEEEE-ECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhh
Q 028343 74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLV-KGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEV 152 (210)
Q Consensus 74 a~~~g~deal~ld~~g~v~E~~~sNlf~~-~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~ 152 (210)
|+++|+||+||+| +|+|+|++++|+|++ ++|+|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+
T Consensus 163 A~~~g~dd~l~ld-~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~ 241 (286)
T PRK06680 163 AKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREA 241 (286)
T ss_pred HHHCCCCEEEEec-CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEE
Confidence 9999999999999 999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHcc
Q 028343 153 FCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTG 197 (210)
Q Consensus 153 f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g 197 (210)
|+|||++||+||.+|+ ++.++ .+++||++++|+++|.+..++
T Consensus 242 f~~ns~~gi~pV~~id--~~~~~-~~~~g~~~~~L~~~~~~~~~~ 283 (286)
T PRK06680 242 FITAASSFVFPVVQID--GKQIG-NGKPGPIAKRLREAYEEFARL 283 (286)
T ss_pred EEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999995 67653 456899999999999876654
No 24
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=1e-39 Score=277.77 Aligned_cols=180 Identities=19% Similarity=0.213 Sum_probs=155.8
Q ss_pred CeEEEEEEecCCCcCcCCC-CCcEEEEEEEecCCCcCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCC
Q 028343 1 MYIRPLLMGSGPVLGVAPA-SEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGF 79 (210)
Q Consensus 1 ~yiR~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~ 79 (210)
.|||++++++.+.+|+.+. .+|++++++.|.++.+.+|+++.++ +.+|. ++++||. ||+.+++++++|+++|+
T Consensus 80 ~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~v~l~~~-~~~r~----~~~~K~~-~~l~~vla~~~a~~~g~ 153 (266)
T PRK09266 80 ASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPAGPLRLQSV-PYERE----LPHIKHV-GTFGQLHLRRLAQRAGF 153 (266)
T ss_pred EEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCCCCeEEEEE-Eeccc----CCCCCCC-CcHHHHHHHHHHHHcCC
Confidence 3899999976666676433 4678888888765544578988876 44553 4579997 78889999999999999
Q ss_pred CeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccccc
Q 028343 80 TDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAV 159 (210)
Q Consensus 80 deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~ 159 (210)
||+||+|++|+|+|++++|||++++|+|+||+. ++|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++
T Consensus 154 de~l~ln~~g~v~E~~~sNlf~v~~~~l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~ 231 (266)
T PRK09266 154 DDALFVDPDGRVSEGATWNLGFWDGGAVVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWR 231 (266)
T ss_pred CeEEEEcCCCcEEEcCceEEEEEECCEEECCCC--CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCcc
Confidence 999999999999999999999999999999994 799999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343 160 GVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG 193 (210)
Q Consensus 160 gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~ 193 (210)
||+||.+|+ ++.+ . ..+|++++|+++|.+
T Consensus 232 gi~pV~~i~--~~~~--~-~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 232 GQRAVSAID--DVAL--P-DSHALLELLRRAYEA 260 (266)
T ss_pred ceEEEEEEC--CEEC--C-CCchHHHHHHHHHHh
Confidence 999999995 6664 2 237999999999965
No 25
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=5.5e-40 Score=278.43 Aligned_cols=179 Identities=27% Similarity=0.335 Sum_probs=156.9
Q ss_pred eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK 75 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~ 75 (210)
+||+.++++.+++|+.++ .++.+++++.|+++++ .+|+++.++ ..++..++.++++|++ ||+.+++++++|+
T Consensus 76 ~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~Kt~-~y~~~~~a~~~A~ 153 (261)
T TIGR03461 76 VLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVS-PVRLGRNPLLAGIKHL-NRLEQVLIKAELE 153 (261)
T ss_pred EEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEe-ccccCCCCCCcCcccc-ccHHHHHHHHHhh
Confidence 799999977666677654 4567888888876543 278888876 4555555567899996 9999999999999
Q ss_pred HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
++|+||+||+|++|+|+|++++|+|+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|
T Consensus 154 ~~g~de~llln~~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ 233 (261)
T TIGR03461 154 NSEADEALVLDTDGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFIT 233 (261)
T ss_pred hcCCCEEEEECCCCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeecCCccHHHHHHH
Q 028343 156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLY 188 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~ 188 (210)
||++||+||++|+ ++.+ .+||++++|+
T Consensus 234 ns~~gi~pV~~id--~~~~----~~~~~~~~l~ 260 (261)
T TIGR03461 234 NSLMGVVPVNAIG--ETSY----PSRTLTRLLQ 260 (261)
T ss_pred CCccceEEEEEEC--CEEe----cchHHHHHhh
Confidence 9999999999995 6764 2579998875
No 26
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.5e-39 Score=280.38 Aligned_cols=181 Identities=22% Similarity=0.319 Sum_probs=156.5
Q ss_pred eEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCc----CCceEEEEEeeeee------cCCCCCCCCccccChHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYH----KGLLNLIVEEKFRR------AIPGGTGGVKAVTNYAIIYKPI 71 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r------~~~~~l~~~K~~~~y~~~~~a~ 71 (210)
+||++++++.++. ..|++++.+.|++..+ .+|+++.+++ .++ ..|..++++||+ ||+.+++++
T Consensus 98 ~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~p~~~~~~Kt~-ny~~~i~a~ 170 (292)
T PRK07849 98 ALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLD-RGYPSDAAERAPWLLAGAKTL-SYAVNMAAL 170 (292)
T ss_pred EEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEe-ccccCcccccCcccccccchh-hhHHHHHHH
Confidence 7999998765433 2577888888875332 3789887763 222 233356889996 999999999
Q ss_pred HHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhh
Q 028343 72 AEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEE 151 (210)
Q Consensus 72 ~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade 151 (210)
++|+++|+||+||+|.+|+|+|++++|||+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||
T Consensus 171 ~~A~~~g~dd~L~ld~~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Ade 250 (292)
T PRK07849 171 RYAARRGADDVIFTSTDGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADG 250 (292)
T ss_pred HHHHHcCCCEEEEEcCCCcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhH
Q 028343 152 VFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQ 195 (210)
Q Consensus 152 ~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~ 195 (210)
+|+|||++||+||.+|+ ++.+ .+||++++|+++|++..
T Consensus 251 vfltns~~gi~pV~~id--~~~~----~~~~~~~~l~~~~~~~~ 288 (292)
T PRK07849 251 VWLVSSVRLAARVHTLD--GRPL----PRDPLADELTELVDAAI 288 (292)
T ss_pred EEEecCcceEEEEEEEC--CEEC----CCChHHHHHHHHHHHHh
Confidence 99999999999999995 6664 36799999999998754
No 27
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=5.2e-39 Score=274.78 Aligned_cols=183 Identities=23% Similarity=0.240 Sum_probs=155.7
Q ss_pred eEEEEEEecCCCcCcCCC---CCcEEEEEEEecCCC---cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPA---SEYTFITYASPVGNY---HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK 75 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~---~~~~~~i~~~p~~~~---~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~ 75 (210)
+||+.++++.+.+|+.++ ..+.++++..|++.. +.+|+++..+.+. | ...+++|++ ||+.+++++++|+
T Consensus 85 ~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~---~~~~~~K~~-nyl~~vla~~eA~ 159 (276)
T TIGR01121 85 HVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVEDI-R---WLRCDIKSL-NLLGNVLAKQEAH 159 (276)
T ss_pred EEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecCC-C---ccCCCcchh-hhHHHHHHHHHHH
Confidence 789999877656666543 246777777776532 2378887655332 2 234689986 9999999999999
Q ss_pred HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
++|+||+||++ +|+|+|++++|+|++++|+|+|||++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|
T Consensus 160 ~~g~de~l~~~-~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~flt 238 (276)
T TIGR01121 160 EKGAYEAILHR-GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVS 238 (276)
T ss_pred HcCCCEEEEec-CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEe
Confidence 99999999996 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343 156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG 193 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~ 193 (210)
||++||+||++|+ ++.++ .+..||++++|+++|.+
T Consensus 239 ns~~gi~PV~~id--~~~~~-~~~~g~~~~~L~~~~~~ 273 (276)
T TIGR01121 239 STTAEITPVIEID--GQQIG-DGKPGPWTRQLQKAFEE 273 (276)
T ss_pred cCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHH
Confidence 9999999999995 66642 45679999999999975
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=2.9e-38 Score=262.23 Aligned_cols=181 Identities=32% Similarity=0.453 Sum_probs=140.8
Q ss_pred eEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcCCceEEEEEeeeeecCCC-----CCCCCccccChHHHHH-HHHHHH
Q 028343 2 YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPG-----GTGGVKAVTNYAIIYK-PIAEAK 75 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~~~~~~r~~~~-----~l~~~K~~~~y~~~~~-a~~ea~ 75 (210)
|||++++++.+..+..++..+............ .+..........+..+. .++++|++ ||+.+.+ +.++|+
T Consensus 45 ~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~ 121 (231)
T PF01063_consen 45 YIRITVTRGGGPLGGSPPENSAPPPFSIAPPRR--PPPPLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAR 121 (231)
T ss_dssp EEEEEEEETSSSSSSSECSEEEEEEEEEETCHH--HHEEEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcCccCcccccccccccccccc--CCcceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHH
Confidence 899999988777777665433322222222211 12222111122232222 47899997 7777776 777777
Q ss_pred HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343 76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT 155 (210)
Q Consensus 76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t 155 (210)
++|+||+|++|++|+|+|++++|||+++||+|+||+++.|+|+||||+.++++++++|++++|++++++||.+|||+|+|
T Consensus 122 ~~g~de~ll~d~~G~v~E~~~sNif~~~~~~~~TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ 201 (231)
T PF01063_consen 122 EKGADEALLLDEDGNVTEGSTSNIFFVKDGTLYTPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLT 201 (231)
T ss_dssp HTTSSEEEEEETTSBEEEESSSEEEEEETTEEEEESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEE
T ss_pred hcCcchhheecCCCCcCCCCCcccccccCCEEEcCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343 156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV 191 (210)
Q Consensus 156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~ 191 (210)
||++||+||.+|+ ++.+ . .||++++|+++|
T Consensus 202 ns~~gi~pV~~i~--~~~~--~--~~p~~~~L~~~~ 231 (231)
T PF01063_consen 202 NSLRGIRPVKSID--GRSF--G--PGPITRRLQEAY 231 (231)
T ss_dssp ETTTEEEEEEEET--TEES--T--THHHHHHHHHHH
T ss_pred cchhhEEEEEEEC--CEEC--C--CCHHHHHHHHhC
Confidence 9999999999994 7663 3 899999999987
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-34 Score=233.93 Aligned_cols=148 Identities=21% Similarity=0.311 Sum_probs=128.2
Q ss_pred eEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCc-CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCCC
Q 028343 2 YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYH-KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFT 80 (210)
Q Consensus 2 yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~-~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~d 80 (210)
+||+++++++ .+.+.+.|+++.+ ..++++.++ ..++..++.+.++||+ ||+.+++++++|+++|+|
T Consensus 60 ~vrl~~~~~g-----------~~~i~~~p~~~~~~~~~~~l~~~-~~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~d 126 (209)
T PRK07546 60 RLRLTLARDG-----------RLTVETAPLPPLPPDTVWRVAIA-RTRLDSADPLLRYKTT-RRAAYDAARAELPPAEAD 126 (209)
T ss_pred EEEEEEcCCC-----------CEEEEEecCCCCCCCCcEEEEEc-CcccCCCCcchhcccC-ChHHHHHHHHHHhhCCCC
Confidence 5788776542 3567788876433 256777766 3456556677899996 999999999999999999
Q ss_pred eEEEEcCCCcEEEeCceEEEEEECCEEE-ccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccccc
Q 028343 81 DVLFLNAEKYIEEVSTSNIFLVKGNEIS-TPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAV 159 (210)
Q Consensus 81 eal~ld~~g~v~E~~~sNlf~~~~~~l~-TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~ 159 (210)
|+||+|++|+|+||+++|+||+++|+|+ ||+++.|+|+||||+.+++. ++++|+.++++||.+|||+|+|||++
T Consensus 127 e~l~l~~~G~v~E~s~~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~ 201 (209)
T PRK07546 127 EVILLNERGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLR 201 (209)
T ss_pred EEEEECCCCcEEEcCceeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccce
Confidence 9999999999999999999999999999 99999999999999999985 58999999999999999999999999
Q ss_pred ceEEEEEE
Q 028343 160 GVNSVNSI 167 (210)
Q Consensus 160 gi~pV~~I 167 (210)
|++||..|
T Consensus 202 gv~pV~~~ 209 (209)
T PRK07546 202 GLIRAELI 209 (209)
T ss_pred eEEEEEEC
Confidence 99999864
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.92 E-value=3e-24 Score=174.13 Aligned_cols=107 Identities=19% Similarity=0.297 Sum_probs=88.3
Q ss_pred CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCC
Q 028343 37 GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTI 116 (210)
Q Consensus 37 ~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~ 116 (210)
+++++..+++ ....+|++ ++. .+....|++.|+||+|++| +|+|+||+++|||+++||+|+||| .++
T Consensus 81 ~~~~~~~~~~-------~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~-~G~v~E~~~sNi~~~~~~~~~TP~--~~~ 147 (187)
T PRK07101 81 RSFQPVYCDD-------IDYSLKYT-DRS--ALNELFAQKGECDEIIIIK-NGLVTDTSIGNLAFFDGKQWFTPK--KPL 147 (187)
T ss_pred CceEEEecCC-------cccccccC-CHH--HHHHHHHHhCCCCEEEEEc-CCEEEEccceEEEEEECCEEEcCC--CCC
Confidence 5666654322 23379997 442 2233345668999999998 799999999999999999999999 489
Q ss_pred cccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccce
Q 028343 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGV 161 (210)
Q Consensus 117 L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi 161 (210)
|+||||+.+++. | +++|+.++++||.+|||+|+|||++|+
T Consensus 148 L~Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 148 LKGTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred ccHHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 999999999983 5 899999999999999999999999884
No 31
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=68.88 E-value=15 Score=25.12 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=36.3
Q ss_pred EEEecCHHHHhhhhhh-hhc-ccccceEEEEEEEecCeEEeecCCccHHHHHHHH
Q 028343 137 KERAIPVEELFDAEEV-FCT-GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYE 189 (210)
Q Consensus 137 ~e~~i~~~el~~ade~-f~t-ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~ 189 (210)
+||.++.++..++.-. .-| .++.-=.||.++.++|+.+.|.|.-|.+...|.+
T Consensus 11 ~Er~~~fe~~~ef~~s~~~C~vtipD~~~V~svt~~G~~ldy~G~~GdLY~~L~k 65 (72)
T PF15507_consen 11 QERTQTFEDYNEFMRSQSGCIVTIPDYYPVTSVTYNGQDLDYQGTYGDLYFFLMK 65 (72)
T ss_pred eEEEEEeCCHHHHHHHhccCcccCCCceEEEEEEECCEEeccccchhHHHHHHHH
Confidence 4566655554443211 223 5667789999999999999888877888777654
No 32
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=42.99 E-value=35 Score=26.69 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=43.4
Q ss_pred HHHHHHHHCCCCeEEEEcC-CCcEEEeCceEEEE---EECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 028343 69 KPIAEAKAKGFTDVLFLNA-EKYIEEVSTSNIFL---VKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKER 139 (210)
Q Consensus 69 ~a~~ea~~~g~deal~ld~-~g~v~E~~~sNlf~---~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~ 139 (210)
.+...|.+.|++- |..-. .+...+....|+.- ..+-.+++|-+ +++++.|.+++++.|++.--+
T Consensus 94 ~~~~~A~~~g~~~-I~~G~~~~D~~~~~~~~l~~~~~~~~~~i~rPl~------~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 94 IAEKLAEELGADA-IVTGESLGQVASQTLENLLVISSGTDLPILRPLI------GFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred HHHHHHHHcCCCE-EEEccCcccchHHHHHhhhhcccCCCCeEECCCC------CCCHHHHHHHHHHcCCcceec
Confidence 3566788889874 44322 24556666666653 24567888753 899999999999999865544
No 33
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=40.32 E-value=20 Score=25.67 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=26.8
Q ss_pred ccchHHHHHHHHHHcCCcEEEEecCHHHHhhh
Q 028343 118 PGITRKSIIEITHVLGYQVKERAIPVEELFDA 149 (210)
Q Consensus 118 ~GitR~~vl~~a~~~gi~v~e~~i~~~el~~a 149 (210)
.|=.-+.|++.|++.|++++|.+.-.+.|.+.
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 46677899999999999999998877777654
No 34
>PRK06683 hypothetical protein; Provisional
Probab=39.79 E-value=49 Score=22.98 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343 121 TRKSIIEITHVLGYQVKERAIPVEELFDAEEVF 153 (210)
Q Consensus 121 tR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f 153 (210)
+++.+.++|+..++|+..-. +.+||..|=..=
T Consensus 41 ~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A~G~~ 72 (82)
T PRK06683 41 LTHVIIRTALQHNIPITKVE-SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHHHHHHhcCCCEEEEC-CHHHHHHHhCCc
Confidence 88899999999999998888 999999874443
No 35
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=38.95 E-value=1.3e+02 Score=24.85 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHh
Q 028343 68 YKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELF 147 (210)
Q Consensus 68 ~~a~~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~ 147 (210)
=||. .|.++|+.--+++|.+|- +|+ . .+-.+. ...++.=+- +...+.+++.|++++.+++++++|.
T Consensus 58 GLAl-AA~rrG~~vev~~~~~~p--------lfl-d--~vr~~~-kk~v~~~v~-~~f~~~a~~~gv~~~~~~~~~~~l~ 123 (207)
T PF11814_consen 58 GLAL-AAARRGFKVEVWVSTDGP--------LFL-D--SVRSEE-KKEVMELVH-EDFREEAEQAGVPVHYRPLSLADLR 123 (207)
T ss_pred HHHH-HHHHcCCceEEEECCCCC--------cee-c--cCCCHH-HHHHHHHHH-HHHHHHHHHCCCceecCCCCHHHHH
Confidence 3444 456689999999997762 222 1 122221 111222222 2234557778999999999999997
Q ss_pred hh
Q 028343 148 DA 149 (210)
Q Consensus 148 ~a 149 (210)
++
T Consensus 124 ~~ 125 (207)
T PF11814_consen 124 AA 125 (207)
T ss_pred HH
Confidence 75
No 36
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=36.80 E-value=32 Score=24.45 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHcCCcEE---------EEecCHHHHhhhhhhhhccccc
Q 028343 125 IIEITHVLGYQVK---------ERAIPVEELFDAEEVFCTGTAV 159 (210)
Q Consensus 125 vl~~a~~~gi~v~---------e~~i~~~el~~ade~f~tns~~ 159 (210)
+-+.+++.|+++. +..++.+++..||-+++++...
T Consensus 21 L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 21 LEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 3457888999877 5567779999999888877653
No 37
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=35.00 E-value=39 Score=23.59 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHcCCcEE---------EEecCHHHHhhhhhhhhcccc
Q 028343 127 EITHVLGYQVK---------ERAIPVEELFDAEEVFCTGTA 158 (210)
Q Consensus 127 ~~a~~~gi~v~---------e~~i~~~el~~ade~f~tns~ 158 (210)
+.+++.|+.+. +..++.+++..||-+++.+..
T Consensus 22 ~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 22 KAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 45777898877 566888999999988887765
No 38
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=33.98 E-value=56 Score=27.12 Aligned_cols=26 Identities=15% Similarity=0.523 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCcEEEEecCHHHHhh
Q 028343 123 KSIIEITHVLGYQVKERAIPVEELFD 148 (210)
Q Consensus 123 ~~vl~~a~~~gi~v~e~~i~~~el~~ 148 (210)
..+++.|++.|+.|+++.++.+||..
T Consensus 93 ~~lF~~A~~~gi~V~~rsvs~~ei~~ 118 (212)
T PF09778_consen 93 NRLFQKAKAAGINVEKRSVSIQEIIE 118 (212)
T ss_pred HHHHHHHHHcCCceEEeeccHHHHHH
Confidence 45667889999999999999999964
No 39
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=33.88 E-value=45 Score=21.75 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred ceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcC
Q 028343 96 TSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLG 133 (210)
Q Consensus 96 ~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~g 133 (210)
-++++++.+++.+--.|.+-.|-|+--...-++|++.|
T Consensus 31 ~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 45777888888888778787888888877777877644
No 40
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=33.03 E-value=28 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCcccchHHHHHHHHHHcCCcE
Q 028343 115 TILPGITRKSIIEITHVLGYQV 136 (210)
Q Consensus 115 ~~L~GitR~~vl~~a~~~gi~v 136 (210)
..|.|.+|+.|++.+...++.|
T Consensus 18 ~VLqgksR~vIirELqrTnLdV 39 (53)
T PF11547_consen 18 VVLQGKSRNVIIRELQRTNLDV 39 (53)
T ss_dssp HHSTTS-HHHHHHHHHHTTT-H
T ss_pred HHHcCCcHHHHHHHHHHhcccH
Confidence 4699999999999888877654
No 41
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=32.81 E-value=84 Score=21.69 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHcCCcEEEEecCHHHHhhhh
Q 028343 120 ITRKSIIEITHVLGYQVKERAIPVEELFDAE 150 (210)
Q Consensus 120 itR~~vl~~a~~~gi~v~e~~i~~~el~~ad 150 (210)
-+++.+.++|++.++|+..-. +.+||..|-
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a~ 69 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKAC 69 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHHH
Confidence 488999999999999998887 999998873
No 42
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=32.38 E-value=48 Score=22.53 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=25.5
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEecCHHHHhh
Q 028343 115 TILPGITRKSIIEITHVLGYQVKERAIPVEELFD 148 (210)
Q Consensus 115 ~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ 148 (210)
.-+.|++|...++.+.+.||+ ...+.+||..
T Consensus 41 Aelag~s~~eF~~~L~~~gI~---~~~~~eel~~ 71 (76)
T PF03683_consen 41 AELAGMSRWEFLELLKERGIP---INYDEEELEE 71 (76)
T ss_pred HHHhCCCHHHHHHHHHHCCCC---CCCCHHHHHH
Confidence 357899999999999999987 3488888753
No 43
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=31.14 E-value=47 Score=23.28 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCcEE---------EEecCHHHHhhhhhhhhcccc
Q 028343 123 KSIIEITHVLGYQVK---------ERAIPVEELFDAEEVFCTGTA 158 (210)
Q Consensus 123 ~~vl~~a~~~gi~v~---------e~~i~~~el~~ade~f~tns~ 158 (210)
+.+-+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 345567888998777 456888999999988887765
No 44
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=31.02 E-value=1e+02 Score=20.04 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=33.8
Q ss_pred HHHHHHHcCCcEEEEecCHHHHhh-hhhhhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHH
Q 028343 125 IIEITHVLGYQVKERAIPVEELFD-AEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYE 189 (210)
Q Consensus 125 vl~~a~~~gi~v~e~~i~~~el~~-ade~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~ 189 (210)
+.-.+++.|++.+...+...+-.. .+|..-.| -.+-+|+-..+ +|..+ + ....+.+-|.+
T Consensus 14 v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n-p~~~vP~l~~~-~g~~l-~--eS~aI~~yL~~ 74 (77)
T cd03057 14 PHIALEELGLPFELVRVDLRTKTQKGADYLAIN-PKGQVPALVLD-DGEVL-T--ESAAILQYLAD 74 (77)
T ss_pred HHHHHHHcCCCceEEEEecccCccCCHhHHHhC-CCCCCCEEEEC-CCcEE-E--cHHHHHHHHHH
Confidence 444667789988877776543322 23333334 46888997653 24554 2 24555555543
No 45
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=29.00 E-value=1.7e+02 Score=19.17 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHH
Q 028343 124 SIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEM 190 (210)
Q Consensus 124 ~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~ 190 (210)
.+...+++.|++.++..+...+-. .++..-.| -.|-+|+-..+.+|..+ + ....+.+-|.+.
T Consensus 15 kv~~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~-p~~~vP~l~~~~~~~~l-~--es~~I~~yL~~~ 76 (77)
T cd03041 15 LVREVLTELELDVILYPCPKGSPK-RDKFLEKG-GKVQVPYLVDPNTGVQM-F--ESADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHcCCcEEEEECCCChHH-HHHHHHhC-CCCcccEEEeCCCCeEE-E--cHHHHHHHHHHh
Confidence 445567778999999888654322 23444444 45889997542123333 2 245555555443
No 46
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=26.19 E-value=1.3e+02 Score=19.21 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=20.4
Q ss_pred HHHHHHHHCCCCeEEEEcCCCcEEEe
Q 028343 69 KPIAEAKAKGFTDVLFLNAEKYIEEV 94 (210)
Q Consensus 69 ~a~~ea~~~g~deal~ld~~g~v~E~ 94 (210)
.|+..|++.+--+.++.+.||.|-|-
T Consensus 34 ~Ar~~a~~~~~~el~Ih~~dG~i~~~ 59 (62)
T PF09954_consen 34 AARELAKNQGGGELIIHGRDGKIREE 59 (62)
T ss_pred HHHHHHHhCCCcEEEEECCCCeEEEe
Confidence 46667777656799999999999874
No 47
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=25.95 E-value=1.3e+02 Score=20.93 Aligned_cols=30 Identities=17% Similarity=0.000 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHcCCcEEEEecCHHHHhhhh
Q 028343 120 ITRKSIIEITHVLGYQVKERAIPVEELFDAE 150 (210)
Q Consensus 120 itR~~vl~~a~~~gi~v~e~~i~~~el~~ad 150 (210)
=+++.+.++|+..++|+ ....+.+||..|=
T Consensus 37 ~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~ 66 (82)
T PRK13601 37 HVTKKIKELCEEKSIKI-VYIDTMKELGVMC 66 (82)
T ss_pred HHHHHHHHHHHhCCCCE-EEeCCHHHHHHHH
Confidence 57888899999999999 4667999998874
No 48
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=25.04 E-value=1.9e+02 Score=18.30 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHH
Q 028343 124 SIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYE 189 (210)
Q Consensus 124 ~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~ 189 (210)
.+.-.+++.|++.++..+...+ ...+.--.| ..|-+|+-.. +|..+ + ....+.+-|.+
T Consensus 14 ~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~vP~l~~--~~~~l-~--es~aI~~yL~~ 71 (73)
T cd03059 14 RVRIVLAEKGVSVEIIDVDPDN--PPEDLAELN-PYGTVPTLVD--RDLVL-Y--ESRIIMEYLDE 71 (73)
T ss_pred HHHHHHHHcCCccEEEEcCCCC--CCHHHHhhC-CCCCCCEEEE--CCEEE-E--cHHHHHHHHHh
Confidence 4445577789999998887542 223333334 4588998753 35544 2 24455554443
No 49
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.77 E-value=1.7e+02 Score=19.81 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccceEEEEEEEecCeEE
Q 028343 125 IIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERI 174 (210)
Q Consensus 125 vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi~pV~~I~~~~~~i 174 (210)
..+++.+.|++.++..+..++-..+++....++-.--+|+.-| +++.+
T Consensus 17 ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i 64 (80)
T COG0695 17 AKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV 64 (80)
T ss_pred HHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE
Confidence 4456667899999999988887677777777765566777766 46665
No 50
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=23.56 E-value=1.5e+02 Score=21.14 Aligned_cols=33 Identities=21% Similarity=0.056 Sum_probs=27.6
Q ss_pred ccchHHHHHHHHHHcCCcEEEEecCHHHHhhhh
Q 028343 118 PGITRKSIIEITHVLGYQVKERAIPVEELFDAE 150 (210)
Q Consensus 118 ~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ad 150 (210)
+--+++.+..+|++.++|+..-..+.+||..|=
T Consensus 43 ~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~ 75 (99)
T PRK01018 43 PKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLC 75 (99)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHh
Confidence 346788999999999999977777999998873
No 51
>PRK08349 hypothetical protein; Validated
Probab=22.75 E-value=97 Score=24.77 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCCeEEEEcCCCcEEEeCceEEEEEEC---CEEEccCCCCCCcccchHHHHHHHHHHcCC
Q 028343 69 KPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKG---NEISTPPTSGTILPGITRKSIIEITHVLGY 134 (210)
Q Consensus 69 ~a~~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~---~~l~TP~l~~~~L~GitR~~vl~~a~~~gi 134 (210)
.+...|.+.|++..+.=+.-|...+....|+..... -.++.|- -+++.+.|++++++.|.
T Consensus 96 ~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~~~~i~i~rPL------~~~~K~eI~~~a~~~g~ 158 (198)
T PRK08349 96 KAERIAHEIGASAIITGDSLGQVASQTLDNLMVISTATDLPVLRPL------IGLDKEEIVKIAKEIGT 158 (198)
T ss_pred HHHHHHHHcCCCEEEEecCCchHHHHHHHHHhccccccCCeEEcCC------CCCCHHHHHHHHHHcCC
Confidence 366678889997555444457888888888766532 2577764 47999999999999884
No 52
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=22.67 E-value=81 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.545 Sum_probs=14.5
Q ss_pred CccHHHHHHHHHHHHhHcc
Q 028343 179 GAGTVGQKLYEMVTGIQTG 197 (210)
Q Consensus 179 ~~g~~t~~L~~~~~~~~~g 197 (210)
+.||+++++.+.|.+.+..
T Consensus 43 GsGPlAerv~~ly~eyi~~ 61 (64)
T PF14894_consen 43 GSGPLAERVYDLYNEYIEK 61 (64)
T ss_dssp --SHHHHHHHHHHHHHHH-
T ss_pred cCChHHHHHHHHHHHHHHh
Confidence 4899999999999987654
No 53
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=22.24 E-value=84 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=20.3
Q ss_pred ccchHHHHHHHHHHcCCcEEEEecC
Q 028343 118 PGITRKSIIEITHVLGYQVKERAIP 142 (210)
Q Consensus 118 ~GitR~~vl~~a~~~gi~v~e~~i~ 142 (210)
.|-.-+.|+++|++.|+|+.+.+--
T Consensus 25 ~g~~A~~I~~~A~e~~VPi~~~~~L 49 (82)
T TIGR00789 25 VGEVAERIIEIAKKHGIPIVEDPDL 49 (82)
T ss_pred CCHHHHHHHHHHHHcCCCEEeCHHH
Confidence 4667788999999999999876543
No 54
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.16 E-value=82 Score=23.79 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCcEE---------EEecCHHHHhhhhhhhhcc
Q 028343 124 SIIEITHVLGYQVK---------ERAIPVEELFDAEEVFCTG 156 (210)
Q Consensus 124 ~vl~~a~~~gi~v~---------e~~i~~~el~~ade~f~tn 156 (210)
.+-..|+++|+.|. +-.++.+|+..||-+++..
T Consensus 23 aLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~Aa 64 (122)
T COG1445 23 ALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAA 64 (122)
T ss_pred HHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEe
Confidence 34456888888765 4469999999999777644
No 55
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.88 E-value=1.6e+02 Score=21.53 Aligned_cols=32 Identities=25% Similarity=0.105 Sum_probs=28.2
Q ss_pred ccchHHHHHHHHHHcCCcEEEEecCHHHHhhh
Q 028343 118 PGITRKSIIEITHVLGYQVKERAIPVEELFDA 149 (210)
Q Consensus 118 ~GitR~~vl~~a~~~gi~v~e~~i~~~el~~a 149 (210)
+.-|++.+.+.|+..++|+..-..+-+||..|
T Consensus 52 ~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A 83 (108)
T PTZ00106 52 PPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTA 83 (108)
T ss_pred CHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHH
Confidence 66788999999999999998777899999887
No 56
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=21.60 E-value=2.5e+02 Score=18.97 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=32.2
Q ss_pred EEEccCCCCCC-cccchHH-HHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccceEEEEEEEecCeEE
Q 028343 106 EISTPPTSGTI-LPGITRK-SIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERI 174 (210)
Q Consensus 106 ~l~TP~l~~~~-L~GitR~-~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi~pV~~I~~~~~~i 174 (210)
++|+|+.++-+ ++.-.+. .+.-+++.+|++.+-..+.. . -+ .+-.|-+|+-.+ +|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~-----~--~~--~~P~GkVP~L~~--dg~vI 61 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRAN-----A--EF--MSPSGKVPFIRV--GNQIV 61 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCC-----c--cc--cCCCCcccEEEE--CCEEE
Confidence 46777765333 3344443 33446777899887653211 1 11 122499999655 57765
No 57
>PRK10638 glutaredoxin 3; Provisional
Probab=21.06 E-value=2.1e+02 Score=19.04 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccceEEEEEEEecCeEE
Q 028343 123 KSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERI 174 (210)
Q Consensus 123 ~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi~pV~~I~~~~~~i 174 (210)
+.+.+++++.|++.++.++..++- +.+.+.--+-..-+|+.-+ +|+.+
T Consensus 16 ~~a~~~L~~~gi~y~~~dv~~~~~--~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 16 HRAKALLNSKGVSFQEIPIDGDAA--KREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred HHHHHHHHHcCCCcEEEECCCCHH--HHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 445567778899999999865531 1222333334466888766 47765
No 58
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=21.01 E-value=1.5e+02 Score=23.68 Aligned_cols=35 Identities=6% Similarity=0.044 Sum_probs=29.3
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhh
Q 028343 114 GTILPGITRKSIIEITHVLGYQVKERAIPVEELFD 148 (210)
Q Consensus 114 ~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ 148 (210)
.|.+.|+.-+.+-.+++++|++++-...+.+++..
T Consensus 40 ~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~ 74 (243)
T PRK15007 40 NNQIVGFDVDLAQALCKEIDATCTFSNQAFDSLIP 74 (243)
T ss_pred CCCEEeeeHHHHHHHHHHhCCcEEEEeCCHHHHhH
Confidence 56789999999999999999998887777666553
No 59
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=20.94 E-value=40 Score=25.38 Aligned_cols=60 Identities=28% Similarity=0.372 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEe----cCHHHHhhhhhhhhccccc---------ceEEEEEEEecCeEE
Q 028343 115 TILPGITRKSIIEITHVLGYQVKERA----IPVEELFDAEEVFCTGTAV---------GVNSVNSITYQDERI 174 (210)
Q Consensus 115 ~~L~GitR~~vl~~a~~~gi~v~e~~----i~~~el~~ade~f~tns~~---------gi~pV~~I~~~~~~i 174 (210)
-.|-||+|+.+-++.+..=-.++-+. +.+..+...|-+|+|++.. -|.-|.+++.-.+++
T Consensus 4 ~aLTGIs~~vi~eL~~~~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~~Dl~~Gt~GiIa~V~~~~i~~qri 76 (119)
T PF04322_consen 4 VALTGISRRVIDELKKNHIRTIEIRSAHNVIALESLDPGDRVFLTSVSLEDLTPGTEGIIAEVKKIEISMQRI 76 (119)
T ss_pred EEEeccCHHHHHHHHhCCceEEEEEcchheeeeecCCCCCEEEEecCCHHHCCCCCCeEEEEEEEEEEEEEEE
Confidence 36889999998887664322344443 4555666668899987653 244555554434444
No 60
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=20.61 E-value=65 Score=25.61 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=35.1
Q ss_pred HHHHHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcc-cchHHHHHHHHHHcCCcE
Q 028343 69 KPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILP-GITRKSIIEITHVLGYQV 136 (210)
Q Consensus 69 ~a~~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~-GitR~~vl~~a~~~gi~v 136 (210)
.....|++.|++-.+.=.......|+-. .+....+..++.|- +. |++++.|+++|++.|++.
T Consensus 86 ~l~~~a~~~g~~~I~~G~~~dD~~e~~~-~~~~~~~~~iirPL-----~~~~~~K~ei~~~a~~~gl~~ 148 (202)
T cd01990 86 ALKEIAEELGLDVVLDGTNADDLGDYRP-GLKALRELGVRSPL-----AEAGLGKAEIRELARELGLPT 148 (202)
T ss_pred HHHHHHHHCCCCEEEEcCccccCcccCh-HHHHHHHcCCcCch-----hhcCCCHHHHHHHHHHcCCCC
Confidence 3455777888854433221233333211 11111123355553 34 899999999999999876
No 61
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=20.60 E-value=1.9e+02 Score=18.35 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccceEEEEEEEecCeEE
Q 028343 124 SIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERI 174 (210)
Q Consensus 124 ~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi~pV~~I~~~~~~i 174 (210)
.+.-.+++.|++.+...+.+.+=....+-|.--+-.|-+|+-.. +|..+
T Consensus 14 ~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l 62 (74)
T cd03045 14 AVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVL 62 (74)
T ss_pred HHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEE
Confidence 34446677899998888765332222223333344578899765 35554
No 62
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=20.15 E-value=1.2e+02 Score=24.58 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=43.3
Q ss_pred cEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhh---hhhhhcccccceEEEE
Q 028343 90 YIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDA---EEVFCTGTAVGVNSVN 165 (210)
Q Consensus 90 ~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~a---de~f~tns~~gi~pV~ 165 (210)
...+....++| ||++-++++.-. ..++....+.-..|.+.++... +.+.+++++.|.+||.
T Consensus 31 l~l~~~s~~l~---gG~v~~~~~~~~------------~~~~~~~~l~l~~idL~ell~~~~~~~~~~tG~lsG~lPl~ 94 (207)
T PF11739_consen 31 LRLSNASAELL---GGRVSLEPLRLP------------LADKSSATLKLENIDLAELLALQGQKGISATGRLSGRLPLR 94 (207)
T ss_pred EEEEEeEEEcc---CCEEEccceecC------------cccCeEEEEEEcCCCHHHHHhhcCccceEEEEEEEEEEeEE
Confidence 44455555544 899999987532 1111134677888999998764 6789999999999996
No 63
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=20.03 E-value=61 Score=25.43 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhh
Q 028343 113 SGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDA 149 (210)
Q Consensus 113 ~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~a 149 (210)
..|+|+..+|+.||+.+-.+ ....+++++++--
T Consensus 92 q~gvL~~~~RE~VIdr~mal----~~~~i~Ld~lKwi 124 (155)
T PF04361_consen 92 QAGVLDPEQREMVIDRAMAL----DSDEISLDDLKWI 124 (155)
T ss_pred HcCCCCHHHHHHHHHHHHhC----CCCCCCHHHHHHH
Confidence 57899999999999987543 4578899998654
Done!