BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028344
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B8J0H2|GLPK_DESDA Glycerol kinase OS=Desulfovibrio desulfuricans (strain ATCC 27774 /
           DSM 6949) GN=glpK PE=3 SV=1
          Length = 498

 Score = 30.8 bits (68), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 107 FLLLLTG----AALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLH 162
           FLLL TG    A+LN+     +      Y Y ++  VF GGAV+      LGI+      
Sbjct: 269 FLLLNTGHSPRASLNNMLTTVAWQTAGGYSYALEGSVFVGGAVVQWLRDGLGIIK----D 324

Query: 163 SAKNSGLWGNSSVPQEGGIAM 183
           S++   L G  +VP  GG+ M
Sbjct: 325 SSEMERLAG--TVPDNGGVYM 343


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,319,970
Number of Sequences: 539616
Number of extensions: 2957523
Number of successful extensions: 6615
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6615
Number of HSP's gapped (non-prelim): 7
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)