Query 028344
Match_columns 210
No_of_seqs 114 out of 230
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 100.0 5E-30 1.1E-34 195.3 8.8 96 57-153 1-97 (97)
2 PF05478 Prominin: Prominin; 88.0 1.6 3.4E-05 44.5 7.2 71 44-116 407-490 (806)
3 PF07344 Amastin: Amastin surf 86.6 6.1 0.00013 32.1 8.7 90 6-110 66-155 (155)
4 cd07912 Tweety_N N-terminal do 83.1 5.5 0.00012 37.9 7.8 29 51-79 38-67 (418)
5 PF05360 YiaAB: yiaA/B two hel 82.3 1.8 3.9E-05 29.4 3.1 43 96-151 2-44 (53)
6 PF04906 Tweety: Tweety; Inte 81.9 2.5 5.4E-05 39.8 5.0 29 54-82 22-50 (406)
7 PF09788 Tmemb_55A: Transmembr 80.1 4.3 9.2E-05 36.3 5.5 66 72-153 177-243 (256)
8 KOG4016 Synaptic vesicle prote 75.6 56 0.0012 28.7 14.3 133 10-161 30-166 (233)
9 KOG4433 Tweety transmembrane/c 73.0 5.2 0.00011 38.8 4.4 53 51-103 42-98 (526)
10 PF13903 Claudin_2: PMP-22/EMP 71.7 32 0.00069 26.9 8.1 27 91-117 103-129 (172)
11 PF05478 Prominin: Prominin; 71.5 16 0.00034 37.4 7.7 24 89-112 139-163 (806)
12 PF07344 Amastin: Amastin surf 69.3 33 0.00071 27.8 7.8 93 43-157 54-151 (155)
13 COG4858 Uncharacterized membra 63.9 44 0.00096 29.0 7.7 60 51-110 122-185 (226)
14 PF04834 Adeno_E3_14_5: Early 59.8 21 0.00047 27.4 4.7 34 130-163 11-49 (97)
15 PF07062 Clc-like: Clc-like; 48.2 1E+02 0.0022 26.7 7.6 56 55-116 104-162 (211)
16 PF11169 DUF2956: Protein of u 47.6 18 0.00039 28.1 2.5 19 90-108 84-102 (103)
17 PRK11383 hypothetical protein; 47.5 47 0.001 27.3 5.0 22 94-115 11-32 (145)
18 PF06157 DUF973: Protein of un 46.6 1.1E+02 0.0025 27.6 7.9 61 93-167 115-178 (285)
19 PF04103 CD20: CD20-like famil 45.8 7.2 0.00016 30.2 0.1 88 10-120 4-91 (150)
20 PF10003 DUF2244: Integral mem 42.8 1.7E+02 0.0037 23.2 7.8 59 84-167 5-63 (140)
21 COG4682 Predicted membrane pro 41.1 1E+02 0.0022 24.8 5.9 61 90-167 7-67 (128)
22 PRK11383 hypothetical protein; 38.9 65 0.0014 26.5 4.7 55 94-168 74-128 (145)
23 PF14798 Ca_hom_mod: Calcium h 38.7 61 0.0013 28.8 4.9 63 48-122 14-76 (251)
24 cd08764 Cyt_b561_CG1275_like N 37.4 2.8E+02 0.006 24.1 13.3 25 4-28 56-80 (214)
25 PF01284 MARVEL: Membrane-asso 36.2 1.9E+02 0.0041 21.8 14.1 64 91-157 78-141 (144)
26 PTZ00201 amastin surface glyco 34.3 3E+02 0.0064 23.6 9.0 27 91-117 151-177 (192)
27 PF00822 PMP22_Claudin: PMP-22 34.3 1.1E+02 0.0024 23.9 5.4 56 53-122 75-130 (166)
28 PF04211 MtrC: Tetrahydrometha 29.3 2.1E+02 0.0045 25.8 6.6 79 51-168 168-248 (262)
29 PF14927 Neurensin: Neurensin 28.4 1.6E+02 0.0035 24.0 5.4 63 93-155 45-121 (140)
30 KOG4684 Uncharacterized conser 27.5 2.3E+02 0.005 25.2 6.5 57 54-112 173-230 (275)
31 PF07271 Cytadhesin_P30: Cytad 27.3 1.5E+02 0.0033 26.9 5.4 23 136-158 73-95 (279)
32 PTZ00201 amastin surface glyco 27.1 1.7E+02 0.0036 25.1 5.5 90 51-159 77-168 (192)
33 PF15048 OSTbeta: Organic solu 25.7 94 0.002 25.0 3.5 34 90-123 34-67 (125)
34 PF12273 RCR: Chitin synthesis 24.9 2.9E+02 0.0063 21.4 6.2 62 137-204 1-68 (130)
35 PF10724 DUF2516: Protein of u 24.5 2.7E+02 0.0058 21.3 5.7 17 7-23 14-30 (100)
36 PF10688 Imp-YgjV: Bacterial i 23.6 89 0.0019 25.7 3.1 22 14-35 7-28 (163)
37 TIGR01148 mtrC N5-methyltetrah 23.0 3.3E+02 0.0071 24.6 6.7 80 52-167 168-249 (265)
38 KOG4112 Signal peptidase subun 22.9 96 0.0021 23.9 2.9 25 7-31 27-51 (101)
39 KOG4026 Uncharacterized conser 22.8 5.1E+02 0.011 22.6 12.6 147 5-166 6-188 (207)
40 PRK01030 tetrahydromethanopter 22.0 3.7E+02 0.008 24.3 6.8 85 51-167 161-247 (264)
41 PRK11403 hypothetical protein; 21.7 1.9E+02 0.004 22.9 4.4 45 93-150 61-105 (113)
42 PF15330 SIT: SHP2-interacting 21.7 3E+02 0.0065 21.2 5.6 29 139-167 3-31 (107)
43 cd08763 Cyt_b561_CYB561 Verteb 20.5 4.6E+02 0.01 21.1 7.5 27 4-30 39-65 (143)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.96 E-value=5e-30 Score=195.25 Aligned_cols=96 Identities=52% Similarity=0.873 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 028344 57 TAALSLLIAQVTINVATGCICCRRGPHP-SNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVV 135 (210)
Q Consensus 57 ~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p-~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~ 135 (210)
+|++||+++|+++|+++||+||+++..| ++.+|+++++||++||++|+||+++|++|+++|++|++++.|.+ ++|+++
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~~-~~C~~~ 79 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWFN-PSCYTV 79 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccC-Cccccc
Confidence 4899999999999999999999777666 56799999999999999999999999999999999999988885 589999
Q ss_pred cCceehhhHHHHHHHHHH
Q 028344 136 KPGVFAGGAVLSLASVTL 153 (210)
Q Consensus 136 k~GvFa~aavl~l~t~~~ 153 (210)
|+|+|++||+|+|+|++|
T Consensus 80 k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 80 KKGVFAGGAVLSLVTALF 97 (97)
T ss_pred CCceeeHhHHHHHHHHhC
Confidence 999999999999999875
No 2
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=88.00 E-value=1.6 Score=44.47 Aligned_cols=71 Identities=24% Similarity=0.497 Sum_probs=43.0
Q ss_pred eecCCCchh-hhHHHHHHHHHHHHHHHHHHhcccccc-CC-CCCCC-------cchH--HH-HHHHHHHHHHHHHHHHHH
Q 028344 44 CSYPRSPAL-GLGLTAALSLLIAQVTINVATGCICCR-RG-PHPSN-------SNWT--IA-LVCFVVSWFTFVIAFLLL 110 (210)
Q Consensus 44 C~Yps~~A~-~lGv~A~v~Ll~aqv~~~~~~gC~Cc~-~~-~~p~~-------~~r~--~a-i~~~v~SWi~f~iA~~lL 110 (210)
-+|..+.-. +++++..++|++.=.+ ...-|+||+ ++ ..|+. +.+. .+ ++.|++||+..+++.+.|
T Consensus 407 ~~y~~yR~~~~lil~~~llLIv~~~~--lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F 484 (806)
T PF05478_consen 407 EKYDSYRWIVGLILCCVLLLIVLCLL--LGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF 484 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554433 4566666655553332 334466786 32 33321 1222 23 667999999999999999
Q ss_pred Hhhhhc
Q 028344 111 LTGAAL 116 (210)
Q Consensus 111 l~Ga~~ 116 (210)
+.|...
T Consensus 485 l~G~~~ 490 (806)
T PF05478_consen 485 LVGGNT 490 (806)
T ss_pred HHHhhh
Confidence 999976
No 3
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=86.63 E-value=6.1 Score=32.12 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Q 028344 6 LALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPS 85 (210)
Q Consensus 6 ~~v~~vv~~lgliAfiLgi~AE~~r~~~~~v~~~~~~~C~Yps~~A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~ 85 (210)
-..+++.++++..|+++|+..=...+. -+-....|.+.+++++++.=++....=.=.-|+ ...+.
T Consensus 66 ~afaIisi~~~~~a~v~g~~~l~~~~~--------------~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~~ 130 (155)
T PF07344_consen 66 QAFAIISIFVYGAAFVLGVLLLCCCSC--------------LRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKSR 130 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-CccCC
Confidence 345677779999999999986554321 123456788888888777665543322112243 22222
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Q 028344 86 NSNWTIALVCFVVSWFTFVIAFLLL 110 (210)
Q Consensus 86 ~~~r~~ai~~~v~SWi~f~iA~~lL 110 (210)
..+-..+-.+++.+|+..+++.+.|
T Consensus 131 ~~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 131 GYKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred CcccCccHHHHHHHHHHHHHHHHhC
Confidence 2234467899999999999988754
No 4
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=83.10 E-value=5.5 Score=37.92 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=18.6
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHhcccccc
Q 028344 51 ALGL-GLTAALSLLIAQVTINVATGCICCR 79 (210)
Q Consensus 51 A~~l-Gv~A~v~Ll~aqv~~~~~~gC~Cc~ 79 (210)
++++ |..|++.|++.-+...+...|.||.
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCc 67 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCD 67 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5553 6667776666666666666677653
No 5
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=82.27 E-value=1.8 Score=29.43 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHHH
Q 028344 96 FVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASV 151 (210)
Q Consensus 96 ~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t~ 151 (210)
...+|+.|+++..+++.|.. |.... .--||.++.+-.+++.++
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~------------l~~KGy~~~~~l~~l~s~ 44 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLD------------LSEKGYYAMGLLFLLFSA 44 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCC------------HHHHHHHHHHHHHHHHHH
Confidence 46799999999999999987 55432 233577777766666553
No 6
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=81.88 E-value=2.5 Score=39.81 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCC
Q 028344 54 LGLTAALSLLIAQVTINVATGCICCRRGP 82 (210)
Q Consensus 54 lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~ 82 (210)
+|..+++.|++.-+...+..-|.||+++.
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRRP 50 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 46666777777776666666777775543
No 7
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=80.11 E-value=4.3 Score=36.26 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=41.1
Q ss_pred HhccccccCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHH
Q 028344 72 ATGCICCRRGP-HPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLAS 150 (210)
Q Consensus 72 ~~gC~Cc~~~~-~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t 150 (210)
..+|+-|++.+ +-+.-.|.-+++||+++-+++++|..+. +|+...+.+ +.|++..-..+.|++
T Consensus 177 lARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~A~~---------------~~giY~~wv~~~l~a 240 (256)
T PF09788_consen 177 LARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTYAKT---------------YGGIYVSWVGLFLIA 240 (256)
T ss_pred cccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHhh---------------cCcEeHHHHHHHHHH
Confidence 36898887543 2222368889999999998887776654 565533322 235666666665555
Q ss_pred HHH
Q 028344 151 VTL 153 (210)
Q Consensus 151 ~~~ 153 (210)
.++
T Consensus 241 ~~~ 243 (256)
T PF09788_consen 241 LIC 243 (256)
T ss_pred HHH
Confidence 444
No 8
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.60 E-value=56 Score=28.71 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCCCceeecCCCc-hhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCc-
Q 028344 10 STVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSP-ALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNS- 87 (210)
Q Consensus 10 ~vv~~lgliAfiLgi~AE~~r~~~~~v~~~~~~~C~Yps~~-A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~- 87 (210)
++-.+++|+-|. +|.-|.=.++.+. ....|.|.+|+ |-.+|++.-+|..++-+.-.+.--. -..+.+.+
T Consensus 30 ~~~~lFsliVf~-si~~eGy~n~~~~----~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~----f~qISsv~~ 100 (233)
T KOG4016|consen 30 VVSWLFSLIVFG-SIVNEGYLNSASS----GEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVY----FPQISSVKD 100 (233)
T ss_pred HHHHHHHHhhee-eeccccccCcccC----CceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhh----hhhhcccch
Confidence 344455555443 5556665555443 33589999887 3455555555555555444443322 11223222
Q ss_pred -chH-HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHHHHHHHHHHHHh
Q 028344 88 -NWT-IALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTL 161 (210)
Q Consensus 88 -~r~-~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~ 161 (210)
+|. ++-+-+-.-|...-.--.|+||-.. .....++ -.++.|==-+|-.++|++.+.|...=+++
T Consensus 101 RkraVl~Dl~~SalwtflwfvGFc~l~nqw-qvs~p~~---------~~~~a~saraaIafsffSilsW~~~A~lA 166 (233)
T KOG4016|consen 101 RKRAVLADLGVSALWAFLWFVGFCFLANQW-QVSKPKE---------NPLGAGSARAAIAFSFFSILSWGGQAVLA 166 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCC---------CCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3433333334332223345554422 1111122 14455534456678888888887654433
No 9
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=73.03 E-value=5.2 Score=38.82 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=32.5
Q ss_pred hhh-hHHHHHHHHHHHHHHHHHHhccccccCCC---CCCCcchHHHHHHHHHHHHHH
Q 028344 51 ALG-LGLTAALSLLIAQVTINVATGCICCRRGP---HPSNSNWTIALVCFVVSWFTF 103 (210)
Q Consensus 51 A~~-lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~---~p~~~~r~~ai~~~v~SWi~f 103 (210)
|.. +|..++.+|.+.-+...+..-|.||.++. ++...-|-+...++|++-+++
T Consensus 42 aL~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cc 98 (526)
T KOG4433|consen 42 ALLLLAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCC 98 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHH
Confidence 444 47778888888888877777888775554 232223334445555555544
No 10
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=71.71 E-value=32 Score=26.86 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028344 91 IALVCFVVSWFTFVIAFLLLLTGAALN 117 (210)
Q Consensus 91 ~ai~~~v~SWi~f~iA~~lLl~Ga~~N 117 (210)
.+.+++++|.++.+++.+.+..--..|
T Consensus 103 ~~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 103 FAGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899998888888777666544
No 11
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=71.54 E-value=16 Score=37.39 Aligned_cols=24 Identities=0% Similarity=0.153 Sum_probs=13.7
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHh
Q 028344 89 WT-IALVCFVVSWFTFVIAFLLLLT 112 (210)
Q Consensus 89 r~-~ai~~~v~SWi~f~iA~~lLl~ 112 (210)
|. +++.+++++.+..+-.+.+|++
T Consensus 139 R~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 139 RGCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5666666666555544555554
No 12
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=69.29 E-value=33 Score=27.83 Aligned_cols=93 Identities=24% Similarity=0.355 Sum_probs=55.9
Q ss_pred eeecCCCc---hhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 028344 43 QCSYPRSP---ALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQ 119 (210)
Q Consensus 43 ~C~Yps~~---A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~ 119 (210)
.|...++. +-++.+.+.++.+++-+++-....| | ..-|.+..++.++++++..+..++. .+-+
T Consensus 54 ~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~~--~-------~~~r~v~l~L~~~~~~~~~v~wa~~-----v~~Y 119 (155)
T PF07344_consen 54 NCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLCC--C-------SCLRWVCLVLNIVGIVTLLVVWALM-----VVVY 119 (155)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-------hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 56544432 5678888888888888887665543 3 1346666777777776665544444 4444
Q ss_pred cccccccccccccccccC-c-eehhhHHHHHHHHHHHHHH
Q 028344 120 HGEESMYFGNYYCYVVKP-G-VFAGGAVLSLASVTLGILY 157 (210)
Q Consensus 120 ~~~~~~~~~~~~C~~~k~-G-vFa~aavl~l~t~~~~i~y 157 (210)
+. ..|...++ + -|+.|=.|.+++=++.++-
T Consensus 120 ~~--------~~C~~~~~~~~~yg~GF~L~v~aw~l~~i~ 151 (155)
T PF07344_consen 120 YG--------GFCGALKSRGYKYGAGFALFVAAWCLDIIN 151 (155)
T ss_pred cc--------CCCcCccCCCcccCccHHHHHHHHHHHHHH
Confidence 41 14876554 3 4666666666665555544
No 13
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=63.93 E-value=44 Score=28.99 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccccCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 028344 51 ALGLGLTAALSLLIAQVTINVATGCICCRRGP----HPSNSNWTIALVCFVVSWFTFVIAFLLL 110 (210)
Q Consensus 51 A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~----~p~~~~r~~ai~~~v~SWi~f~iA~~lL 110 (210)
|+.+|+...++..+.--.++......-++.+. .|+.-+-..+.+..++-|+...++-++|
T Consensus 122 A~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~l 185 (226)
T COG4858 122 AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVFL 185 (226)
T ss_pred CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 67788876666555555555555443333222 2221133356888899998877665554
No 14
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=59.78 E-value=21 Score=27.41 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=27.2
Q ss_pred cccccccC-----ceehhhHHHHHHHHHHHHHHHHHhhh
Q 028344 130 YYCYVVKP-----GVFAGGAVLSLASVTLGILYYLTLHS 163 (210)
Q Consensus 130 ~~C~~~k~-----GvFa~aavl~l~t~~~~i~yYv~~~~ 163 (210)
.+||..|. -+.+++.++.+.++++++..|-.+.-
T Consensus 11 l~CY~~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~~ 49 (97)
T PF04834_consen 11 LDCYDKKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFDF 49 (97)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhhheeec
Confidence 36888555 45899999999999999998877643
No 15
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=48.20 E-value=1e+02 Score=26.72 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcc---ccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028344 55 GLTAALSLLIAQVTINVATGC---ICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAAL 116 (210)
Q Consensus 55 Gv~A~v~Ll~aqv~~~~~~gC---~Cc~~~~~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~ 116 (210)
=.+..++++++++.+..+..+ .+|. |+ ...+-.++..+++++..+|.+.+..-+-+
T Consensus 104 h~AvLil~~~s~lf~~lsi~~~iCa~c~----~~--~ai~~~v~~~ia~l~S~~g~~iF~~~a~~ 162 (211)
T PF07062_consen 104 HKAVLILISFSMLFALLSICFGICAPCH----PS--FAIFYTVLVFIAALLSLIGLGIFFFNAHM 162 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC----Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888877655543 2242 21 12455777788999999999888876655
No 16
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=47.57 E-value=18 Score=28.10 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028344 90 TIALVCFVVSWFTFVIAFL 108 (210)
Q Consensus 90 ~~ai~~~v~SWi~f~iA~~ 108 (210)
.+.-+++++||+-|++-+.
T Consensus 84 ~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 84 WLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3556799999999987654
No 17
>PRK11383 hypothetical protein; Provisional
Probab=47.52 E-value=47 Score=27.34 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 028344 94 VCFVVSWFTFVIAFLLLLTGAA 115 (210)
Q Consensus 94 ~~~v~SWi~f~iA~~lLl~Ga~ 115 (210)
.|..+||+.++++..+++.|-.
T Consensus 11 af~~~sw~al~~g~~~y~iGLw 32 (145)
T PRK11383 11 AFSIVSWIALVGGIVTYLLGLW 32 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999976
No 18
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=46.56 E-value=1.1e+02 Score=27.58 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHH---HHHHHHHHHHhhhcccC
Q 028344 93 LVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLAS---VTLGILYYLTLHSAKNS 167 (210)
Q Consensus 93 i~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t---~~~~i~yYv~~~~a~~~ 167 (210)
....+++++...++.+++..+.-+--+ .-+++.+-.||+|..+. .+=++..|+.+.+-.+.
T Consensus 115 ~~l~~ig~il~~IG~ILlgi~~yrlG~--------------~y~~~~ikvgGIL~ii~~l~~IG~iL~yigl~~~~~~ 178 (285)
T PF06157_consen 115 LILLLIGAILAFIGYILLGIGLYRLGS--------------RYNNGLIKVGGILIIIPILSFIGYILMYIGLGEVISK 178 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhccCceehhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 344555566666666666554432111 11234455566665553 34466667766665543
No 19
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=45.77 E-value=7.2 Score=30.22 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcch
Q 028344 10 STVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNW 89 (210)
Q Consensus 10 ~vv~~lgliAfiLgi~AE~~r~~~~~v~~~~~~~C~Yps~~A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r 89 (210)
++=+++|+++..||+.+...+.. . ..-.+.++-+.++.+++=+++..+. .+|.+..-
T Consensus 4 ~~qI~lGi~~i~lGi~~~~~~~~--~-------------~~~~~~piW~G~~fiisG~l~i~s~--------k~~~~~lv 60 (150)
T PF04103_consen 4 VIQILLGILSIVLGIIALSLSSS--V-------------LVYIGYPIWGGIFFIISGILGIASE--------KKPTKCLV 60 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH--H-------------HHHhcccHHHHHHHHhhHHHHHHHh--------cCCcccch
Confidence 44568899999999888876554 0 1112233333333333333332221 12321122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 028344 90 TIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120 (210)
Q Consensus 90 ~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~ 120 (210)
....++.++|-+..+.+.++...+...+.++
T Consensus 61 ~~~l~lsi~s~~~a~~~i~l~~~~l~~~~~~ 91 (150)
T PF04103_consen 61 IASLVLSIVSALLALAGIILSSISLAQQHYY 91 (150)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2446677777777777778877777765544
No 20
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=42.81 E-value=1.7e+02 Score=23.24 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=42.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHHHHHHHHHHHHhhh
Q 028344 84 PSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHS 163 (210)
Q Consensus 84 p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~~~ 163 (210)
.|-+.|....++.+++-+++++|..+++.|+. -.-.++.+.-.+++.+.|...+.
T Consensus 5 rSLs~~g~~~~~~~~~~~~~~~a~~f~~~GaW-------------------------~Vl~F~glev~~l~~a~~~~~r~ 59 (140)
T PF10003_consen 5 RSLSPRGFLIFIAILAAVSLIIAIAFLLMGAW-------------------------PVLPFAGLEVLALWYAFRRNYRH 59 (140)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhchH-------------------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777788888888888999988888774 23445566677778888888877
Q ss_pred cccC
Q 028344 164 AKNS 167 (210)
Q Consensus 164 a~~~ 167 (210)
+++.
T Consensus 60 ~~~~ 63 (140)
T PF10003_consen 60 ARDY 63 (140)
T ss_pred CcCc
Confidence 7653
No 21
>COG4682 Predicted membrane protein [Function unknown]
Probab=41.08 E-value=1e+02 Score=24.79 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHHHHHHHHHHHHhhhcccC
Q 028344 90 TIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS 167 (210)
Q Consensus 90 ~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~~~a~~~ 167 (210)
.....|-++||..++++++.++.|-. |+.+.- -.||-|-+. ++..+|+..+|.=..+.+-|
T Consensus 7 ~~s~af~~va~~~lv~G~vvyLiGLW-na~~qL------------nEKGYyfaV----lvl~~F~a~s~Qk~vrdk~e 67 (128)
T COG4682 7 IVSKAFTIVAWLALVVGAVVYLVGLW-NACMQL------------NEKGYYFAV----LVLGLFGAYSYQKTVRDKLE 67 (128)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc-ccchhh------------ccCceeehh----HHHHhhHHHHHHHHHHHhcc
Confidence 44566778899999999999999975 443322 224556543 44455566665544344434
No 22
>PRK11383 hypothetical protein; Provisional
Probab=38.93 E-value=65 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHHHHHHHHHHHHhhhcccCC
Q 028344 94 VCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSG 168 (210)
Q Consensus 94 ~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~~~a~~~~ 168 (210)
++.-+||..++++..+|+.|.. |+.-. .-.+|++..+=+|+|+.. +.+.|+.|+.
T Consensus 74 ~f~~~cw~a~l~~i~LL~iGLw-NA~l~------------lsEKGfY~~af~lsLFga-------i~vQKn~RD~ 128 (145)
T PRK11383 74 IYYMTCLTVFIISVALLMVGLW-NATLL------------LSEKGFYGLAFFLSLFGA-------VAVQKNIRDA 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCcc------------hhhhhHHHHHHHHHHHHH-------HHHHhhhhhh
Confidence 6777899999999999999975 55421 334577877766666653 4577877653
No 23
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=38.71 E-value=61 Score=28.79 Aligned_cols=63 Identities=30% Similarity=0.365 Sum_probs=46.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 028344 48 RSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGE 122 (210)
Q Consensus 48 s~~A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~ 122 (210)
++.+++.|+++++-+.--|+.-++.=.|||=-+ -|..-+.+| .++-|.++|+.|-..|++..+
T Consensus 14 ~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~~~------~N~~YGl~f------LlvPAl~LfllG~~ln~~~W~ 76 (251)
T PF14798_consen 14 HSESLGNGICALLTAGGEQLFSSFVFSCPCSPG------WNFLYGLVF------LLVPALVLFLLGYLLNRRTWR 76 (251)
T ss_pred cchhHHHHHHHHHHHHHHhhhheeeeecCCCCc------ccchhHhHH------HHHHHHHHHHHHHHHhcccch
Confidence 567889999999999999999999999995212 233333332 345788999999999987533
No 24
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=37.44 E-value=2.8e+02 Score=24.10 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 028344 4 KVLALCSTVGLLGLLSAATGFGAEA 28 (210)
Q Consensus 4 ~~~~v~~vv~~lgliAfiLgi~AE~ 28 (210)
+.+.+-.+.-.++++.++.|+.|-.
T Consensus 56 ~~k~~H~~L~~lAl~~~ivGl~avf 80 (214)
T cd08764 56 RLKLLHAVLHLLAFILAVIGLKAVF 80 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777776643
No 25
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=36.24 E-value=1.9e+02 Score=21.81 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHHHHHHHHH
Q 028344 91 IALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILY 157 (210)
Q Consensus 91 ~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t~~~~i~y 157 (210)
.-.+.=.+.++..+++.+.+.......+-....+ +.......+.+...++++|++++.++.++.
T Consensus 78 ~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s 141 (144)
T PF01284_consen 78 VEFIFDAVFAILWLAAFIALAAYLSDHSCSNTGN---DYSYSGCSRCGAWKAAAAFGFLNWLLFIVS 141 (144)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCC---CcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666665555444311110000 001123344466779999999999888776
No 26
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=34.30 E-value=3e+02 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028344 91 IALVCFVVSWFTFVIAFLLLLTGAALN 117 (210)
Q Consensus 91 ~ai~~~v~SWi~f~iA~~lLl~Ga~~N 117 (210)
.+-.+++.+|+..+|..++|+..--.+
T Consensus 151 aGF~Llv~AW~L~iinii~lllp~~~~ 177 (192)
T PTZ00201 151 TGFALLVVAWILDILNIIFLLLPCTVP 177 (192)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccccC
Confidence 568899999999999999999876443
No 27
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=34.27 E-value=1.1e+02 Score=23.86 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 028344 53 GLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGE 122 (210)
Q Consensus 53 ~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~ 122 (210)
++-+.|.++..++-++.... ..|.+....+. . +-+.+++|.++.+.+.+.-..+..
T Consensus 75 ~l~i~s~il~~l~~~l~~~g--~~~~~~~~~~~----~--------ag~l~~~agl~~l~~~~~y~~~~~ 130 (166)
T PF00822_consen 75 ALMILSIILGFLGLILALFG--LCCTKRGPRPK----V--------AGILFILAGLCLLIAVSWYTAVIV 130 (166)
T ss_pred HHhHHHHHHHHHHHHHHHhc--ccccccCCCCC----c--------ceeeeHHHhhhhheeEEEEeccCc
Confidence 45666777666665554433 22223222222 1 455677888888888888555443
No 28
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=29.26 E-value=2.1e+02 Score=25.78 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchH--HHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Q 028344 51 ALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWT--IALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFG 128 (210)
Q Consensus 51 A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r~--~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~ 128 (210)
...-|+.|.+|.+-+..+-+--.-|+ +++..+ +|+ +++-+=.+||+.+.+.-.-++
T Consensus 168 vi~~G~IAl~Fi~~~mAIlHPFNACL---GPnE~q--~RTL~la~~~G~ls~ii~~i~s~~~~----------------- 225 (262)
T PF04211_consen 168 VINTGYIALLFIIGGMAILHPFNACL---GPNESQ--DRTLTLAVECGFLSMIIFGIVSLDLI----------------- 225 (262)
T ss_pred HhccCHHHHHHHHHHHHhcCcccccc---CCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 34456667776666655554333322 222222 455 678889999988866443332
Q ss_pred ccccccccCceehhhHHHHHHHHHHHHHHHHHhhhcccCC
Q 028344 129 NYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSG 168 (210)
Q Consensus 129 ~~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~~~a~~~~ 168 (210)
-.++..+.|...|..+-+.-.+|
T Consensus 226 -----------------sivv~~i~W~~~y~~y~~~sk~d 248 (262)
T PF04211_consen 226 -----------------SIVVGAIGWYISYKKYVKLSKRD 248 (262)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888999988887764443
No 29
>PF14927 Neurensin: Neurensin
Probab=28.36 E-value=1.6e+02 Score=23.98 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccc------------cccccc--cccccccCceehhhHHHHHHHHHHHH
Q 028344 93 LVCFVVSWFTFVIAFLLLLTGAALNDQHGEE------------SMYFGN--YYCYVVKPGVFAGGAVLSLASVTLGI 155 (210)
Q Consensus 93 i~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~------------~~~~~~--~~C~~~k~GvFa~aavl~l~t~~~~i 155 (210)
-+.|++.-++.+++.++++.|-..-++-... ...+|+ ..|.....++|..||++--+..++++
T Consensus 45 kV~~i~g~l~Ll~Gi~~l~vgY~vP~~~e~~~~~~~~~~vD~~a~~~n~~Ld~c~laG~~L~~lGg~lla~~Ll~s~ 121 (140)
T PF14927_consen 45 KVGFISGLLLLLLGIVALTVGYLVPPKIEVFGEAGEFVVVDSQAARFNNALDTCKLAGLILLCLGGILLAVCLLVSI 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcceeccccccccccchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777776653332111 011221 36988888888888877666555433
No 30
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=27.46 E-value=2.3e+02 Score=25.15 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 028344 54 LGLTAALSLLIAQVTINVATGCICCRRGPHP-SNSNWTIALVCFVVSWFTFVIAFLLLLT 112 (210)
Q Consensus 54 lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p-~~~~r~~ai~~~v~SWi~f~iA~~lLl~ 112 (210)
+|=+.=.||. .-+-|+..+|+-||.-+.- +.-.|.-++.||++...+.+.|.++-+.
T Consensus 173 CgHC~~tFLf--nt~tnaLArCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt~g 230 (275)
T KOG4684|consen 173 CGHCNETFLF--NTLTNALARCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILTMG 230 (275)
T ss_pred ecCccceeeh--hhHHHHHhcCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3444434443 2345677789888654322 2124556788999988887777766553
No 31
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=27.26 E-value=1.5e+02 Score=26.87 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=15.1
Q ss_pred cCceehhhHHHHHHHHHHHHHHH
Q 028344 136 KPGVFAGGAVLSLASVTLGILYY 158 (210)
Q Consensus 136 k~GvFa~aavl~l~t~~~~i~yY 158 (210)
..+.|+.-++..++-..+++-+|
T Consensus 73 v~~~~G~~~v~liLgl~ig~p~~ 95 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAIGIPIY 95 (279)
T ss_pred ccchhhHHHHHHHHHHhhcchhh
Confidence 55667777776666666666554
No 32
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=27.05 E-value=1.7e+02 Score=25.09 Aligned_cols=90 Identities=22% Similarity=0.180 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccc
Q 028344 51 ALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNY 130 (210)
Q Consensus 51 A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~ 130 (210)
|-++.++|+++..+|-+++-.... ||. ..|++..++-+++ ++..+..|+.+.-.+++.+ +.
T Consensus 77 aqAfaIISI~v~~aA~vlg~~~l~--cc~-------~lr~vcl~Lnivg-----~vt~~VvWa~mv~~Y~~~~-----~~ 137 (192)
T PTZ00201 77 AQALAVISILVYGAAFVLGLVLLY--GCT-------IHRWVCLALNIVG-----AVTLGVVWAAMVVTYYKDD-----GP 137 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--ccc-------hHHHHHHHHHHHH-----HHHHheeeeeEEEEEEcCC-----Cc
Confidence 456788888888888887765554 231 2455544443333 3444556777665555331 12
Q ss_pred ccccccC-c-eehhhHHHHHHHHHHHHHHHH
Q 028344 131 YCYVVKP-G-VFAGGAVLSLASVTLGILYYL 159 (210)
Q Consensus 131 ~C~~~k~-G-vFa~aavl~l~t~~~~i~yYv 159 (210)
.|+..|+ + -|+.|=.|-+++-.+.++--+
T Consensus 138 ~C~~~~~~~~~yGaGF~Llv~AW~L~iinii 168 (192)
T PTZ00201 138 LCPRVRDMGYRFGTGFALLVVAWILDILNII 168 (192)
T ss_pred cccccccCCCCccCcHHHHHHHHHHHHHHHH
Confidence 5887777 4 466666666666666555533
No 33
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.67 E-value=94 Score=24.97 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 028344 90 TIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEE 123 (210)
Q Consensus 90 ~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~ 123 (210)
.|-...+++|-++.+|++++|.-+...|+.+.+.
T Consensus 34 pWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 34 PWNYSILALSFVVLVISFFLLGRSIQANRNRKMQ 67 (125)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhHhccccccc
Confidence 3556678899999999999999999999876543
No 34
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.89 E-value=2.9e+02 Score=21.44 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred CceehhhHHHHHHHHHHHHHHHHHhhhcccCC------CCCCCCCCCCCccccCCCCCCCCCCCCCcccCCcch
Q 028344 137 PGVFAGGAVLSLASVTLGILYYLTLHSAKNSG------LWGNSSVPQEGGIAMGQPQFPPQRTQEPVFVHEDTY 204 (210)
Q Consensus 137 ~GvFa~aavl~l~t~~~~i~yYv~~~~a~~~~------~~~~~~~~~~~gi~m~~p~~~~~~~~~~~~~~~~~~ 204 (210)
+-+|.+.-|+.++-.+|...+ +.-++.++.. .|..|| .. .-.+.+|.++...++.|+|+.++
T Consensus 1 RW~l~~iii~~i~l~~~~~~~-~~rRR~r~G~~P~~gt~w~~pp----~~-~q~~~~Y~~~~~~~~~~~P~y~~ 68 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYC-HNRRRRRRGLQPIYGTRWMAPP----SY-RQSQQQYNQPPQYNPDYVPPYTE 68 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCcCCceecCCC----CC-CCCCCccCCCCCCCCCCCCCCCC
No 35
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=24.50 E-value=2.7e+02 Score=21.35 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 028344 7 ALCSTVGLLGLLSAATG 23 (210)
Q Consensus 7 ~v~~vv~~lgliAfiLg 23 (210)
++.+++..+++.|++.+
T Consensus 14 ~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 14 ALSLVALVLAVWALVDA 30 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455556666666654
No 36
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=23.56 E-value=89 Score=25.67 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhcccccc
Q 028344 14 LLGLLSAATGFGAEATRIKGSQ 35 (210)
Q Consensus 14 ~lgliAfiLgi~AE~~r~~~~~ 35 (210)
.+|.+|+++|+.+=..|++.+-
T Consensus 7 ~~g~ia~~l~~~sf~~k~~~~l 28 (163)
T PF10688_consen 7 ILGFIAFLLGILSFQQKDDRRL 28 (163)
T ss_pred HHHHHHHHHHHHHHHcccHHHH
Confidence 7899999999999887776543
No 37
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.96 E-value=3.3e+02 Score=24.60 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchH--HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccc
Q 028344 52 LGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWT--IALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGN 129 (210)
Q Consensus 52 ~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r~--~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~ 129 (210)
.+-|+.|.+|.+-+..+-+=-.-|+ +++..+ +|+ +++-|=.+||+.+.+.....+
T Consensus 168 i~~G~IAl~Fi~~~mAilHPFNACL---GPnE~q--~RTL~La~e~G~ls~ii~~i~s~~~~------------------ 224 (265)
T TIGR01148 168 IANGYIALLFIIGGMAILHPFNACL---GPNESQ--DRTLWLAVECGFITGFVSSLHEGLMV------------------ 224 (265)
T ss_pred hcccHHHHHHHHHHHHhcCcchhcc---CCCcch--hHHHHHHHHHhHHHHHHHHHHHHhhh------------------
Confidence 3446677777666666554333332 222222 455 678899999999888765222
Q ss_pred cccccccCceehhhHHHHHHHHHHHHHHHHHhhhcccC
Q 028344 130 YYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS 167 (210)
Q Consensus 130 ~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~~~a~~~ 167 (210)
.+.-.++..+.|...|..+.+...+
T Consensus 225 -------------s~~~iiig~i~W~v~y~~fv~~sk~ 249 (265)
T TIGR01148 225 -------------AGLNILVGAIIWYVAFSKFVALSKR 249 (265)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134677888899999888766443
No 38
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.85 E-value=96 Score=23.93 Aligned_cols=25 Identities=8% Similarity=0.104 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc
Q 028344 7 ALCSTVGLLGLLSAATGFGAEATRI 31 (210)
Q Consensus 7 ~v~~vv~~lgliAfiLgi~AE~~r~ 31 (210)
.--+++.+.|++.||+|+..|.-+-
T Consensus 27 ~~q~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677899999999999987544
No 39
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.82 E-value=5.1e+02 Score=22.55 Aligned_cols=147 Identities=18% Similarity=0.104 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcc----cc--cccccCCCceeecCCCch----------------hhhHHHHHHHH
Q 028344 5 VLALCSTVGLLGLLSAATGFGAEATRI----KG--SQVQITSPTQCSYPRSPA----------------LGLGLTAALSL 62 (210)
Q Consensus 5 ~~~v~~vv~~lgliAfiLgi~AE~~r~----~~--~~v~~~~~~~C~Yps~~A----------------~~lGv~A~v~L 62 (210)
...+.++=.++.+...+|..+|-.+.- .. +.....-+.+|.+|..+- ...=+++ .|+
T Consensus 6 ~~~~gviW~l~t~c~a~l~~v~fi~P~Wig~~~~~~~g~fGl~~~C~~~~~~~~~~~~~~~~~~~~ips~~~~~a~-f~v 84 (207)
T KOG4026|consen 6 SRAVGVIWALCTICFAVLFMVAFIQPYWIGDSVNGKPGSFGLFTYCVGPVLPGSLECRGRLASFSSIPSNEFKLAA-FFV 84 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccceeccCCcCCCCccccceeeccCCCCCCcccccCCccccccCCcHHHHHHH-HHH
Confidence 344556666788888888888776651 11 111112344676654332 2333333 333
Q ss_pred HHHHHHH---HHHhcc-ccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-----hhccccccccc-----cccc
Q 028344 63 LIAQVTI---NVATGC-ICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTG-----AALNDQHGEES-----MYFG 128 (210)
Q Consensus 63 l~aqv~~---~~~~gC-~Cc~~~~~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~G-----a~~N~~~~~~~-----~~~~ 128 (210)
+.+..+. .+..-| .||+++++- +.+ .|. .++|.++++.| .-+++..-|+. +-++
T Consensus 85 lla~~Lill~i~~~~l~~~c~~~si~----~~c-------g~~-q~~a~l~milGc~lyP~GW~s~~vr~~CG~~a~ky~ 152 (207)
T KOG4026|consen 85 LLAFVLILLLIVFLALLGCCRSKSIF----NMC-------GWM-QGIAGLCMILGCALYPDGWDSPEVRRMCGAKAGKYY 152 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhh----hhh-------HHH-HHHHHHHHHHHHHhcCCccCCHHHHHHhccccCCcc
Confidence 3333333 233344 478765422 222 232 22333444444 34444322210 0011
Q ss_pred ccccccccCceehhhHHHHHHHHHHHHHHHHHhhhccc
Q 028344 129 NYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN 166 (210)
Q Consensus 129 ~~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~~~a~~ 166 (210)
-.+|.+ | -=|--|-+-++++.++..++.+.-.|+.+
T Consensus 153 lG~CsI-g-WaY~lAIig~~daliL~~lsf~l~~k~~~ 188 (207)
T KOG4026|consen 153 LGDCSI-G-WAYYLAIIGILDALILAFLSFVLGTKQQR 188 (207)
T ss_pred Cccccc-c-HHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 125743 2 12555677788999999999887777765
No 40
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=21.96 E-value=3.7e+02 Score=24.27 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchH--HHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Q 028344 51 ALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWT--IALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFG 128 (210)
Q Consensus 51 A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~~~~r~--~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~ 128 (210)
..+-|+.|.+|.+-+..+-+=-.-|+ +++..+ +|+ +++-+=.+||+.+.+.-..+.-
T Consensus 161 vi~~G~IAl~FI~~~mAIlHPFNACL---GP~E~q--~RTL~la~e~G~ls~ii~gi~s~~~~~---------------- 219 (264)
T PRK01030 161 VIATGFIALLFILGGMAILHPFNACL---GPNESQ--DRTLTLAVECGFLSMIIFGIASLAFLG---------------- 219 (264)
T ss_pred HhcccHHHHHHHHHHHHhcCcccccc---CCCcch--hHHHHHHHHHHHHHHHHHHHHHHHhhc----------------
Confidence 34457777777766666654333332 222222 455 6788999999999886554220
Q ss_pred ccccccccCceehhhHHHHHHHHHHHHHHHHHhhhcccC
Q 028344 129 NYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS 167 (210)
Q Consensus 129 ~~~C~~~k~GvFa~aavl~l~t~~~~i~yYv~~~~a~~~ 167 (210)
...+-+-.++..+.|...|..+.+.-.+
T Consensus 220 -----------~~~~~i~iivg~i~W~~~y~~y~~~sk~ 247 (264)
T PRK01030 220 -----------LAAAIISIIVGLIGWYYAYVKFVKLSKR 247 (264)
T ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233455677888999999888766433
No 41
>PRK11403 hypothetical protein; Provisional
Probab=21.75 E-value=1.9e+02 Score=22.92 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHH
Q 028344 93 LVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLAS 150 (210)
Q Consensus 93 i~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t 150 (210)
-.++-+||...+++..+|..|.. |+.-. ...||+++.+=+++|+.
T Consensus 61 ~~y~~~cw~~~llsi~LL~vGl~-NA~l~------------lsEKgfY~~af~lsLfg 105 (113)
T PRK11403 61 DFFIHICQLVALITIGLLFIGVL-NAPIN------------AYEMVIYPIAFFVCLFG 105 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-ccccc------------HHHhhHHHHHHHHHHHH
Confidence 56788899999999999999975 55421 33467888777777766
No 42
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=21.73 E-value=3e+02 Score=21.24 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=23.3
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhhhcccC
Q 028344 139 VFAGGAVLSLASVTLGILYYLTLHSAKNS 167 (210)
Q Consensus 139 vFa~aavl~l~t~~~~i~yYv~~~~a~~~ 167 (210)
+.+.=|+|-|+..++++..|.+..+.+++
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~ 31 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKA 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44556778889999999999999887765
No 43
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.49 E-value=4.6e+02 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhc
Q 028344 4 KVLALCSTVGLLGLLSAATGFGAEATR 30 (210)
Q Consensus 4 ~~~~v~~vv~~lgliAfiLgi~AE~~r 30 (210)
..+.+-.+.-.++++.++.|+.|+.+.
T Consensus 39 ~~k~~H~~L~~la~~~~~~Gl~av~~~ 65 (143)
T cd08763 39 STKILHGLLHIMALVISLVGLVAVFDY 65 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888999999886643
Done!