Query 028344
Match_columns 210
No_of_seqs 114 out of 230
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa7_B TIP, hypothetical 28.7 13.3 92 0.0032 17.4 1.5 12 182-193 4-15 (26)
2 2jo1_A Phospholemman; FXYD1, N 12.9 1.5E+02 0.0052 20.6 2.8 19 60-78 25-43 (72)
3 2jp3_A FXYD domain-containing 10.4 2.1E+02 0.0072 19.6 2.9 18 62-79 28-45 (67)
4 2zxe_G FXYD10, phospholemman-l 9.8 1.7E+02 0.006 20.4 2.3 16 62-77 30-45 (74)
5 1ihs_I Hirutonin; hydrolase(se 9.5 1.2E+02 0.0042 16.8 1.1 13 188-200 2-14 (26)
6 3pbl_A D(3) dopamine receptor, 8.9 8.3E+02 0.028 20.3 7.4 24 90-113 157-180 (481)
7 1afo_A Glycophorin A; integral 7.4 3.5E+02 0.012 16.6 2.7 12 13-24 15-26 (40)
8 2apo_B Ribosome biogenesis pro 7.3 1.3E+02 0.0045 20.1 0.8 12 195-206 33-44 (60)
9 2nr1_A NR1 M2, M2; receptor, s 6.5 2.2E+02 0.0075 16.1 1.3 14 105-118 10-23 (27)
10 2z5k_B Nuclear RNA export fact 6.4 2.4E+02 0.0083 16.1 1.5 21 179-206 5-25 (30)
No 1
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=13.29 E-value=92 Score=17.40 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=8.8
Q ss_pred ccCCCCCCCCCC
Q 028344 182 AMGQPQFPPQRT 193 (210)
Q Consensus 182 ~m~~p~~~~~~~ 193 (210)
+|-.|+.||++.
T Consensus 4 G~P~P~LPpRPa 15 (26)
T 1wa7_B 4 GMPTPPLPPRPA 15 (26)
T ss_dssp CCCCCCCCCCTT
T ss_pred CCCCCCCCCCcc
Confidence 567888888743
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=12.89 E-value=1.5e+02 Score=20.57 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhccccc
Q 028344 60 LSLLIAQVTINVATGCICC 78 (210)
Q Consensus 60 v~Ll~aqv~~~~~~gC~Cc 78 (210)
..|.+.-+++..+..|-|-
T Consensus 25 ~vLfi~GI~iilS~KckCk 43 (72)
T 2jo1_A 25 GILFILGILIVLSRRCRCK 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccccC
Confidence 3344445555667788763
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.39 E-value=2.1e+02 Score=19.58 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcccccc
Q 028344 62 LLIAQVTINVATGCICCR 79 (210)
Q Consensus 62 Ll~aqv~~~~~~gC~Cc~ 79 (210)
|.+.-++...+.+|-|..
T Consensus 28 Lfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 28 LCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHcCcccccC
Confidence 334445555677888653
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=9.81 E-value=1.7e+02 Score=20.37 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhcccc
Q 028344 62 LLIAQVTINVATGCIC 77 (210)
Q Consensus 62 Ll~aqv~~~~~~gC~C 77 (210)
|.+.-+++..+.+|-|
T Consensus 30 Lfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 30 LCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHcCcccc
Confidence 3344455556778775
No 5
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=9.49 E-value=1.2e+02 Score=16.81 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=8.5
Q ss_pred CCCCCCCCCcccC
Q 028344 188 FPPQRTQEPVFVH 200 (210)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (210)
||||.+.+..|-+
T Consensus 2 fpPqshn~gDFe~ 14 (26)
T 1ihs_I 2 FPXQSHNDGDFEE 14 (26)
T ss_pred CCcccCCCCCCCc
Confidence 6777666666643
No 6
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=8.86 E-value=8.3e+02 Score=20.33 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028344 90 TIALVCFVVSWFTFVIAFLLLLTG 113 (210)
Q Consensus 90 ~~ai~~~v~SWi~f~iA~~lLl~G 113 (210)
..+....++.|+..++..+..+.+
T Consensus 157 ~~~~~~i~~~W~~~~~~~~~~~~~ 180 (481)
T 3pbl_A 157 RRVALMITAVWVLAFAVSCPLLFG 180 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 345566778898877666655554
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=7.38 E-value=3.5e+02 Score=16.62 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 028344 13 GLLGLLSAATGF 24 (210)
Q Consensus 13 ~~lgliAfiLgi 24 (210)
+.|++.|.+.|.
T Consensus 15 II~~vmaGiIG~ 26 (40)
T 1afo_A 15 IIFGVMAGVIGT 26 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555555443
No 8
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=7.31 E-value=1.3e+02 Score=20.07 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=9.5
Q ss_pred CCcccCCcchhh
Q 028344 195 EPVFVHEDTYMR 206 (210)
Q Consensus 195 ~~~~~~~~~~~~ 206 (210)
-|.|-|+|.|.|
T Consensus 33 ParfSp~Dky~~ 44 (60)
T 2apo_B 33 PPKFSLEDRWGK 44 (60)
T ss_dssp CCCCCTTCTTHH
T ss_pred CCCCCCCcchHH
Confidence 356999999984
No 9
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.47 E-value=2.2e+02 Score=16.12 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=9.8
Q ss_pred HHHHHHHhhhhccc
Q 028344 105 IAFLLLLTGAALND 118 (210)
Q Consensus 105 iA~~lLl~Ga~~N~ 118 (210)
++...|.||...|+
T Consensus 10 ~aa~wF~WGvllns 23 (27)
T 2nr1_A 10 SSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheec
Confidence 56677777777765
No 10
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=6.43 E-value=2.4e+02 Score=16.09 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=13.2
Q ss_pred CccccCCCCCCCCCCCCCcccCCcchhh
Q 028344 179 GGIAMGQPQFPPQRTQEPVFVHEDTYMR 206 (210)
Q Consensus 179 ~gi~m~~p~~~~~~~~~~~~~~~~~~~~ 206 (210)
.-++|...++-+| +-..||..
T Consensus 5 gd~~m~d~~~~~~-------~RytPY~~ 25 (30)
T 2z5k_B 5 GDVAMSDAQDGPR-------VRYNPYTT 25 (30)
T ss_pred cCccccccccCcc-------ccccCccc
Confidence 4577877776665 44556653
Done!