Query 028344
Match_columns 210
No_of_seqs 114 out of 230
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 16:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028344.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028344hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 32.5 25 0.0018 19.3 3.3 22 8-29 6-27 (34)
2 d2apob1 g.41.16.1 (B:403-457) 10.8 35 0.0025 21.1 0.6 12 195-206 31-42 (55)
3 d2ey4e1 g.41.16.1 (E:4-55) Rib 10.8 37 0.0027 20.7 0.8 11 195-205 29-39 (52)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 9.4 85 0.0062 20.5 2.5 17 8-24 6-22 (158)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 6.0 2.2E+02 0.016 15.6 2.7 22 140-161 8-29 (36)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 4.6 2.6E+02 0.019 14.8 2.3 24 138-161 6-29 (33)
7 d2aqaa1 g.41.16.1 (A:2-58) H/a 4.6 2.1E+02 0.015 17.4 2.1 13 195-207 31-43 (57)
8 d1ansa_ g.11.1.1 (A:) Neurotox 4.5 99 0.0072 15.8 0.4 7 74-80 3-9 (27)
9 d1v54a_ f.24.1.1 (A:) Mitochon 3.3 1.1E+03 0.081 19.4 9.1 18 138-155 452-469 (514)
10 d1ppjd2 f.23.11.1 (D:196-241) 3.2 4.6E+02 0.034 14.8 2.9 15 145-159 13-27 (46)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=32.53 E-value=25 Score=19.28 Aligned_cols=22 Identities=27% Similarity=0.131 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028344 8 LCSTVGLLGLLSAATGFGAEAT 29 (210)
Q Consensus 8 v~~vv~~lgliAfiLgi~AE~~ 29 (210)
+.+++.+-|+.||.|-++|-.+
T Consensus 6 vavvvmvagits~glv~aa~at 27 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALAT 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHHH
Confidence 5577788999999998887543
No 2
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.83 E-value=35 Score=21.06 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=9.7
Q ss_pred CCcccCCcchhh
Q 028344 195 EPVFVHEDTYMR 206 (210)
Q Consensus 195 ~~~~~~~~~~~~ 206 (210)
-+.|-|||+|.+
T Consensus 31 P~rfSPeDky~~ 42 (55)
T d2apob1 31 PPKFSLEDRWGK 42 (55)
T ss_dssp CCCCCTTCTTHH
T ss_pred CCCCCCCcchHH
Confidence 457999999983
No 3
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=10.81 E-value=37 Score=20.70 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=9.3
Q ss_pred CCcccCCcchh
Q 028344 195 EPVFVHEDTYM 205 (210)
Q Consensus 195 ~~~~~~~~~~~ 205 (210)
-+.|-|||+|.
T Consensus 29 ParfSPeDky~ 39 (52)
T d2ey4e1 29 PPRFSPEDPYG 39 (52)
T ss_dssp CCCCCTTCTTH
T ss_pred CCCCCCCcccH
Confidence 45799999998
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.44 E-value=85 Score=20.54 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028344 8 LCSTVGLLGLLSAATGF 24 (210)
Q Consensus 8 v~~vv~~lgliAfiLgi 24 (210)
+.+++.++|++|.+.--
T Consensus 6 LlVViaIIgILaaia~P 22 (158)
T d2pila_ 6 LMIVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666788888877543
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.95 E-value=2.2e+02 Score=15.60 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.2
Q ss_pred ehhhHHHHHHHHHHHHHHHHHh
Q 028344 140 FAGGAVLSLASVTLGILYYLTL 161 (210)
Q Consensus 140 Fa~aavl~l~t~~~~i~yYv~~ 161 (210)
|.+.+.|.++-+.|-++.|+--
T Consensus 8 ~iAt~LFilvPt~FLliLyvqT 29 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 5677888888888888888743
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.58 E-value=2.6e+02 Score=14.79 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=18.7
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHh
Q 028344 138 GVFAGGAVLSLASVTLGILYYLTL 161 (210)
Q Consensus 138 GvFa~aavl~l~t~~~~i~yYv~~ 161 (210)
|-.+.-++|+|.-.+||...|-.+
T Consensus 6 gal~vi~il~l~ilvfw~gv~avf 29 (33)
T d1xmec1 6 GALAVILVLTLTILVFWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888999999999887654
No 7
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.56 E-value=2.1e+02 Score=17.39 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.0
Q ss_pred CCcccCCcchhhc
Q 028344 195 EPVFVHEDTYMRR 207 (210)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (210)
-+.|-|+|.|.|.
T Consensus 31 PaRFSPdDkysr~ 43 (57)
T d2aqaa1 31 PARFSPDDKYSRQ 43 (57)
T ss_dssp CCCCCSSSTTSHH
T ss_pred CCcCCcccccHHH
Confidence 3569999999853
No 8
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.54 E-value=99 Score=15.80 Aligned_cols=7 Identities=29% Similarity=0.729 Sum_probs=3.7
Q ss_pred ccccccC
Q 028344 74 GCICCRR 80 (210)
Q Consensus 74 gC~Cc~~ 80 (210)
.|+|+++
T Consensus 3 ccpcywg 9 (27)
T d1ansa_ 3 CCPCYWG 9 (27)
T ss_dssp SCCSTTT
T ss_pred ccccccc
Confidence 4566543
No 9
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.29 E-value=1.1e+03 Score=19.41 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=9.2
Q ss_pred ceehhhHHHHHHHHHHHH
Q 028344 138 GVFAGGAVLSLASVTLGI 155 (210)
Q Consensus 138 GvFa~aavl~l~t~~~~i 155 (210)
-+=+.|+++.++..++-+
T Consensus 452 ~~~siG~~i~~~~~~~f~ 469 (514)
T d1v54a_ 452 TISSMGSFISLTAVMLMV 469 (514)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556665555554443
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.21 E-value=4.6e+02 Score=14.76 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028344 145 VLSLASVTLGILYYL 159 (210)
Q Consensus 145 vl~l~t~~~~i~yYv 159 (210)
++.+++.+..+.||.
T Consensus 13 v~~~l~~l~~l~yy~ 27 (46)
T d1ppjd2 13 MLLMMGLLLPLVYAM 27 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555666654
Done!