BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028345
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/62 (90%), Positives = 59/62 (95%)
Query: 96 CELTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVG 155
CE +V+PSGLAFCDKVVG GPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPL FR+GVG
Sbjct: 5 CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVG 64
Query: 156 EV 157
EV
Sbjct: 65 EV 66
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 99 IVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 158 CN 159
Sbjct: 159 IK 160
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 8 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIK 64
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 104 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIK 160
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVC 158
SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 8 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVI 63
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 158 CN 159
Sbjct: 159 IK 160
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+V +
Sbjct: 38 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV----------I 87
Query: 169 KSWSL 173
K+W +
Sbjct: 88 KAWDI 92
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMV 158
Query: 158 CN 159
Sbjct: 159 IK 160
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 12 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIK 68
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 28 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIK 84
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+V +
Sbjct: 42 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV----------I 91
Query: 169 KSWSL 173
K+W +
Sbjct: 92 KAWDI 96
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+V +
Sbjct: 42 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV----------I 91
Query: 169 KSWSL 173
K+W +
Sbjct: 92 KAWDI 96
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+V +
Sbjct: 42 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV----------I 91
Query: 169 KSWSL 173
K+W +
Sbjct: 92 KAWDI 96
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
GQ+ HY G L +GKVFDSS RGKP F +G GEV
Sbjct: 20 GQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIR 58
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+V +
Sbjct: 26 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV----------I 75
Query: 169 KSWSL 173
K+W +
Sbjct: 76 KAWDI 80
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K VG G E + G + HY GKL NGK FDSS++R +P +F +G G+V +
Sbjct: 38 KRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQV----------I 87
Query: 169 KSWSL 173
K+W +
Sbjct: 88 KAWDI 92
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+V +
Sbjct: 26 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV----------I 75
Query: 169 KSWSL 173
K+W +
Sbjct: 76 KAWDI 80
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
SGL + D G G EA GQ + HY G L +G+ F SS +R P F LG G V
Sbjct: 104 SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIK 160
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQL 180
G+ + HY G+ +GK FDSS +RGKP F LG GEV +K W L
Sbjct: 43 GKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEV----------IKGWDQGVATMTL 92
Query: 181 SFETCFPIFIWWLWFYNGSKTII 203
+ F I + G +I
Sbjct: 93 GEKALFTIPYQLAYGERGYPPVI 115
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
KGQ HY G L+NGK FDSS +R KP FR+G EV
Sbjct: 18 KGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEV 55
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSL 173
G +K HYVG LENG FDSS +RG F LG G V +K W L
Sbjct: 33 GTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNV----------IKGWDL 75
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVC 158
G L+ HY G LENG+ FDSS +RG P +GVG+V
Sbjct: 25 GDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVI 62
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
KG ++ HY GKLE+G FDSS + +P +F LG G+V
Sbjct: 8 KGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIK 47
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 120 KGQLIKAHYVGKLEN-GKVFDSSYNRGKPLIFRLGVGEV 157
KG + HYVGKLE+ GKVFDSS R P F LG GEV
Sbjct: 35 KGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEV 73
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 102 PSGLAFCDKVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFR 151
PSGL F G G A + HY G+L +G VFDSS RGKP FR
Sbjct: 36 PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR 86
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 120 KGQLIKAHYVGKLEN-GKVFDSSYNRGKPLIFRLGVGEV 157
KG + HYVGKLE+ GKVFDSS++R P F L GEV
Sbjct: 36 KGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 120 KGQLIKAHYVGKLEN-GKVFDSSYNRGKPLIFRLGVGEV 157
KG + HYVGKLE+ GKVFDSS++R P F L GEV
Sbjct: 36 KGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCAN 163
+GQ HY G LE+GK FDSS +R KP F LG EV A
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAE 61
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIR 57
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 20 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIR 59
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIR 57
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIR 57
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIR 57
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIR 57
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIR 57
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 23/39 (58%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
GQ HY G LE+GK FDSS +R KP F LG EV
Sbjct: 19 GQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIR 57
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK FDSS ++ KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIR 57
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK DSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIR 57
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
+GQ HY G LE+GK DSS +R KP F LG EV
Sbjct: 18 RGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIR 57
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
G ++ HY G L +GK FDSS +R F+LG G+V
Sbjct: 46 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIK 84
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCN 159
G ++ HY G L +GK FDSS +R F+LG G+V
Sbjct: 30 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIK 68
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRL 152
+ + +GL + G G + +Y G L +GK FD+SY RG+PL FRL
Sbjct: 116 VKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL 170
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRL 152
+ + +GL + G G + +Y G L +GK FD+SY RG+PL FRL
Sbjct: 116 VKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL 170
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRL 152
+ V PSGL + G G + K + Y G+L +G VFDS+ GKP F++
Sbjct: 101 VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV 155
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRL 152
+ V PSGL + G G + K + Y G+L +G VFDS+ GKP F++
Sbjct: 25 VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV 79
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K G G E + G + HY G L +G FDSS +R F LG GEV +
Sbjct: 37 KREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEV----------I 86
Query: 169 KSWSL 173
K+W +
Sbjct: 87 KAWDI 91
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 124 IKAHYVGKLENGKVFDSSYNRGKPLIFRLG 153
+ H+ KL++G +S+ N GKP +FRLG
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLG 60
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSL 173
G + HY G L +G FDSS +R F LG GEV +K+W +
Sbjct: 50 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEV----------IKAWDI 92
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSL 173
G + HY G L +G FDSS +R F LG GEV +K+W +
Sbjct: 54 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEV----------IKAWDI 96
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRL 152
G+ + G GP+ ++ YVG+L +GK+FD S +P FRL
Sbjct: 117 DGILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQST---QPQWFRL 163
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSY-------NRGKPLIFRLGVGEVC 158
KG ++ Y G L++G VFD++ KPL F++GVG+V
Sbjct: 19 KGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVI 64
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRV 168
K G G E + G + HY G L +G FDSS +R F LG GEV +
Sbjct: 58 KREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEV----------I 107
Query: 169 KSWSL 173
K+W +
Sbjct: 108 KAWDI 112
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNR 144
KG IK Y+GKLE+G VFD+S
Sbjct: 4 KGVKIKVDYIGKLESGDVFDTSIEE 28
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSY-------NRGKPLIFRLGVGEVC 158
KG ++ Y G L +G VFD++ KPL F++GVG+V
Sbjct: 22 KGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVI 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,679,841
Number of Sequences: 62578
Number of extensions: 205501
Number of successful extensions: 345
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 54
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)