Query 028345
Match_columns 210
No_of_seqs 245 out of 1412
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.9 3.1E-22 6.8E-27 168.4 8.8 94 92-197 90-186 (205)
2 KOG0544 FKBP-type peptidyl-pro 99.8 1.1E-20 2.4E-25 141.5 8.4 83 104-193 2-85 (108)
3 KOG0552 FKBP-type peptidyl-pro 99.8 2.5E-18 5.5E-23 147.3 10.9 88 99-197 116-208 (226)
4 PRK11570 peptidyl-prolyl cis-t 99.7 1.4E-17 3.1E-22 141.4 10.8 93 92-196 91-186 (206)
5 KOG0549 FKBP-type peptidyl-pro 99.7 9.4E-18 2E-22 139.1 9.0 85 101-195 66-155 (188)
6 TIGR03516 ppisom_GldI peptidyl 99.7 5.5E-16 1.2E-20 128.9 10.2 92 95-197 61-157 (177)
7 PRK10902 FKBP-type peptidyl-pr 99.6 1.2E-15 2.6E-20 134.4 10.0 92 92-195 135-229 (269)
8 PRK15095 FKBP-type peptidyl-pr 99.5 1.3E-13 2.8E-18 112.6 6.8 75 117-201 4-81 (156)
9 PF00254 FKBP_C: FKBP-type pep 99.4 5.3E-13 1.2E-17 98.5 8.2 72 117-198 4-78 (94)
10 COG1047 SlpA FKBP-type peptidy 99.4 1.1E-12 2.4E-17 108.7 5.9 76 117-202 2-80 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.2 5.2E-11 1.1E-15 100.7 6.8 74 117-201 2-78 (196)
12 KOG0543 FKBP-type peptidyl-pro 98.7 9.4E-09 2E-13 94.6 4.9 61 111-182 1-62 (397)
13 KOG0543 FKBP-type peptidyl-pro 98.7 6E-08 1.3E-12 89.3 8.7 77 102-192 83-165 (397)
14 TIGR00115 tig trigger factor. 97.4 0.00048 1E-08 63.6 7.1 54 116-182 145-198 (408)
15 PRK01490 tig trigger factor; P 97.3 0.0006 1.3E-08 63.5 6.3 54 116-182 156-209 (435)
16 COG0544 Tig FKBP-type peptidyl 97.2 0.00059 1.3E-08 64.4 6.2 62 118-192 158-224 (441)
17 KOG0545 Aryl-hydrocarbon recep 96.4 0.0023 4.9E-08 56.7 2.4 71 102-182 9-83 (329)
18 KOG0544 FKBP-type peptidyl-pro 88.4 0.2 4.4E-06 38.2 0.9 41 163-203 52-92 (108)
19 TIGR02811 formate_TAT formate 64.3 11 0.00025 26.4 3.6 7 62-68 10-16 (66)
20 PRK09774 fec operon regulator 58.7 56 0.0012 29.3 8.0 60 98-157 111-177 (319)
21 COG3712 FecR Fe2+-dicitrate se 53.3 48 0.001 30.4 6.7 62 96-157 113-180 (322)
22 PF10518 TAT_signal: TAT (twin 49.5 20 0.00044 20.5 2.4 17 61-77 2-18 (26)
23 PF01346 FKBP_N: Domain amino 49.1 15 0.00032 28.0 2.4 17 93-109 108-124 (124)
24 PLN00042 photosystem II oxygen 43.8 22 0.00049 31.6 2.9 33 41-78 35-67 (260)
25 PF05984 Cytomega_UL20A: Cytom 33.2 71 0.0015 23.9 3.7 20 62-81 2-21 (100)
26 PF11012 DUF2850: Protein of u 27.6 81 0.0017 23.1 3.2 43 115-157 10-53 (79)
27 PHA02122 hypothetical protein 27.1 1E+02 0.0022 21.3 3.3 20 119-139 39-58 (65)
28 PRK15368 pathogenicity island 25.3 55 0.0012 25.9 2.0 23 174-197 67-89 (127)
29 PF04315 DUF462: Protein of un 25.0 31 0.00066 28.7 0.6 15 183-198 59-73 (164)
30 TIGR01480 copper_res_A copper- 22.6 2.9E+02 0.0063 27.3 7.0 17 118-134 80-96 (587)
31 TIGR01409 TAT_signal_seq Tat ( 21.6 76 0.0016 18.3 1.7 12 62-73 2-13 (29)
32 PF10399 UCR_Fe-S_N: Ubiquitin 20.1 53 0.0011 21.0 0.9 9 60-68 8-16 (41)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.1e-22 Score=168.42 Aligned_cols=94 Identities=31% Similarity=0.458 Sum_probs=86.4
Q ss_pred CCCCCCeeeCCCCcEEEEEEcCCCcCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchh
Q 028345 92 APSPCELTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSW 171 (210)
Q Consensus 92 ~~~~~~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~ 171 (210)
+...+.++++++||+|++++.|+|+.|+.+|+|.|||+|+|.||++||||+++|+|+.|.+| +||+ ||
T Consensus 90 ~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~----------Gw 157 (205)
T COG0545 90 NAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIP----------GW 157 (205)
T ss_pred hcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--Ceee----------hH
Confidence 34667799999999999999999999999999999999999999999999999999999998 8999 88
Q ss_pred HHhhhcCceee---EEecCcccchhhhcC
Q 028345 172 SLEFDNNQLSF---ETCFPIFIWWLWFYN 197 (210)
Q Consensus 172 ~~g~~~m~vG~---~~i~pe~ay~~~~~~ 197 (210)
++||.+|++|+ ++|||++||..=.-.
T Consensus 158 ~egl~~M~vG~k~~l~IP~~laYG~~g~~ 186 (205)
T COG0545 158 DEGLQGMKVGGKRKLTIPPELAYGERGVP 186 (205)
T ss_pred HHHHhhCCCCceEEEEeCchhccCcCCCC
Confidence 99999999996 789999999876533
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=141.53 Aligned_cols=83 Identities=33% Similarity=0.480 Sum_probs=71.5
Q ss_pred CcEEEEEEcCCCcC-CCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCceee
Q 028345 104 GLAFCDKVVGVGPE-AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLSF 182 (210)
Q Consensus 104 Gl~~~~l~~G~G~~-p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG~ 182 (210)
|+..+++..|+|.. |++||+|.+||+|.+.||++||||.++++||.|.+|.|+||+||||+ ...|..+++..
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdeg-------v~qmsvGekak 74 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEG-------VAQMSVGEKAK 74 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhc-------chhccccccce
Confidence 68899999999966 99999999999999999999999999999999999999999955544 22344445667
Q ss_pred EEecCcccchh
Q 028345 183 ETCFPIFIWWL 193 (210)
Q Consensus 183 ~~i~pe~ay~~ 193 (210)
++|.|+|||..
T Consensus 75 Lti~pd~aYG~ 85 (108)
T KOG0544|consen 75 LTISPDYAYGP 85 (108)
T ss_pred eeeccccccCC
Confidence 99999998864
No 3
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.5e-18 Score=147.35 Aligned_cols=88 Identities=38% Similarity=0.613 Sum_probs=81.7
Q ss_pred eeCCCCcEEEEEEcCCCcCCCCCCEEEEEEEEEeC-CCcEEecccCCCCCEE-EEecCCcccccccccccccchhHHhhh
Q 028345 99 TVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLE-NGKVFDSSYNRGKPLI-FRLGVGEVCNQCANKSNRVKSWSLEFD 176 (210)
Q Consensus 99 ~~~~sGl~~~~l~~G~G~~p~~Gd~V~vhY~g~l~-dG~vFDSS~~~g~P~~-F~lG~g~VIpGlee~~~~~kG~~~g~~ 176 (210)
+++++||+|++++.|+|+.+..|+.|.+||.|++. +|++||+++.. .|+. |.+|.++||+ ||+.|+.
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIk----------G~d~gv~ 184 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIK----------GWDVGVE 184 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCc----------hHHHhhh
Confidence 67899999999999999999999999999999999 99999999964 7999 9999999999 8889999
Q ss_pred cCceee---EEecCcccchhhhcC
Q 028345 177 NNQLSF---ETCFPIFIWWLWFYN 197 (210)
Q Consensus 177 ~m~vG~---~~i~pe~ay~~~~~~ 197 (210)
+|++|+ ++|||++||..=..+
T Consensus 185 GMkvGGkRrviIPp~lgYg~~g~~ 208 (226)
T KOG0552|consen 185 GMKVGGKRRVIIPPELGYGKKGVP 208 (226)
T ss_pred hhccCCeeEEEeCccccccccCcC
Confidence 999997 679999999876666
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.74 E-value=1.4e-17 Score=141.44 Aligned_cols=93 Identities=26% Similarity=0.313 Sum_probs=84.2
Q ss_pred CCCCCCeeeCCCCcEEEEEEcCCCcCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchh
Q 028345 92 APSPCELTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSW 171 (210)
Q Consensus 92 ~~~~~~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~ 171 (210)
+..+.+++++++||+|+++++|+|..|..+|.|.|||++++.||++||+|+++++|+.|.+| ++|| ||
T Consensus 91 ~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vip----------G~ 158 (206)
T PRK11570 91 NAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIP----------GW 158 (206)
T ss_pred hhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhh----------HH
Confidence 44567899999999999999999999999999999999999999999999999999999996 6888 78
Q ss_pred HHhhhcCceee---EEecCcccchhhhc
Q 028345 172 SLEFDNNQLSF---ETCFPIFIWWLWFY 196 (210)
Q Consensus 172 ~~g~~~m~vG~---~~i~pe~ay~~~~~ 196 (210)
+++|.+|++|. +.|||+.||.....
T Consensus 159 ~eaL~~M~~G~k~~~~IP~~lAYG~~g~ 186 (206)
T PRK11570 159 IEALTLMPVGSKWELTIPHELAYGERGA 186 (206)
T ss_pred HHHHcCCCCCCEEEEEECHHHcCCCCCC
Confidence 88899999885 78999999977654
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.4e-18 Score=139.09 Aligned_cols=85 Identities=29% Similarity=0.409 Sum_probs=74.5
Q ss_pred CCCCcEEEEEEc--CCCcCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcC
Q 028345 101 APSGLAFCDKVV--GVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNN 178 (210)
Q Consensus 101 ~~sGl~~~~l~~--G~G~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m 178 (210)
+.++|++.+++. .+..+.+.||+|.+||++.+.||++|||||++++|++|++|.|+||+ |||.||.+|
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIk----------G~Dqgl~gM 135 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIK----------GWDQGLLGM 135 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceec----------cHhHHhhhh
Confidence 346677776665 46778999999999999999999999999999999999999999999 788899999
Q ss_pred ceee---EEecCcccchhhh
Q 028345 179 QLSF---ETCFPIFIWWLWF 195 (210)
Q Consensus 179 ~vG~---~~i~pe~ay~~~~ 195 (210)
.+|+ ++|||++||..=.
T Consensus 136 CvGEkRkl~IPp~LgYG~~G 155 (188)
T KOG0549|consen 136 CVGEKRKLIIPPHLGYGERG 155 (188)
T ss_pred CcccceEEecCccccCccCC
Confidence 8885 7899999997654
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.66 E-value=5.5e-16 Score=128.95 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=81.1
Q ss_pred CCCeeeCCCCcEEEEEEc--CCCcCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhH
Q 028345 95 PCELTVAPSGLAFCDKVV--GVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWS 172 (210)
Q Consensus 95 ~~~~~~~~sGl~~~~l~~--G~G~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~ 172 (210)
...+.++++|++|.++++ |+|..|+.||.|.+||++++.||++||++++. .|+.|.+|.+++|+ ||+
T Consensus 61 ~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~----------Gl~ 129 (177)
T TIGR03516 61 IVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFS----------GLR 129 (177)
T ss_pred CCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhH----------HHH
Confidence 356789999999999976 77788999999999999999999999999874 59999999999999 777
Q ss_pred HhhhcCcee---eEEecCcccchhhhcC
Q 028345 173 LEFDNNQLS---FETCFPIFIWWLWFYN 197 (210)
Q Consensus 173 ~g~~~m~vG---~~~i~pe~ay~~~~~~ 197 (210)
++|.+|++| .+.|||++||..++.+
T Consensus 130 e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~ 157 (177)
T TIGR03516 130 DGLKLMKEGETATFLFPSHKAYGYYGDQ 157 (177)
T ss_pred HHHcCCCCCCEEEEEECHHHcCCCCCCC
Confidence 788888877 4889999999998765
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.63 E-value=1.2e-15 Score=134.43 Aligned_cols=92 Identities=26% Similarity=0.376 Sum_probs=82.6
Q ss_pred CCCCCCeeeCCCCcEEEEEEcCCCcCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchh
Q 028345 92 APSPCELTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSW 171 (210)
Q Consensus 92 ~~~~~~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~ 171 (210)
+..+..++++++||+|+++++|+|..|..||.|.|||++++.||++||+++.++.|+.|.++ ++|| ||
T Consensus 135 ~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vip----------G~ 202 (269)
T PRK10902 135 FAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIP----------GW 202 (269)
T ss_pred hccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--Ccch----------HH
Confidence 35667799999999999999999999999999999999999999999999999999999996 6898 78
Q ss_pred HHhhhcCceee---EEecCcccchhhh
Q 028345 172 SLEFDNNQLSF---ETCFPIFIWWLWF 195 (210)
Q Consensus 172 ~~g~~~m~vG~---~~i~pe~ay~~~~ 195 (210)
.++|.+|++|. +.|||+++|..-.
T Consensus 203 ~EaL~~Mk~Gek~~l~IP~~laYG~~g 229 (269)
T PRK10902 203 TEGLKNIKKGGKIKLVIPPELAYGKAG 229 (269)
T ss_pred HHHHhcCCCCcEEEEEECchhhCCCCC
Confidence 88889998885 6799999988743
No 8
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.45 E-value=1.3e-13 Score=112.57 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCceee---EEecCcccchh
Q 028345 117 EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLSF---ETCFPIFIWWL 193 (210)
Q Consensus 117 ~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG~---~~i~pe~ay~~ 193 (210)
.++.||+|.+||++++.||++||+|+++++|+.|.+|.|++|+ ||+.+|.+|++|. +.|+|++||..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~----------gle~aL~gm~~Ge~~~v~ipp~~ayG~ 73 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSE----------GLEQQLLGLKVGDKKTFSLEPEAAFGV 73 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccH----------HHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 5789999999999999999999999988899999999999999 6777788888874 78999999999
Q ss_pred hhcCCCcc
Q 028345 194 WFYNGSKT 201 (210)
Q Consensus 194 ~~~~~~~~ 201 (210)
|+++.-.+
T Consensus 74 ~d~~~v~~ 81 (156)
T PRK15095 74 PSPDLIQY 81 (156)
T ss_pred CChHHEEE
Confidence 98875433
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.43 E-value=5.3e-13 Score=98.50 Aligned_cols=72 Identities=32% Similarity=0.477 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCceee---EEecCcccchh
Q 028345 117 EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLSF---ETCFPIFIWWL 193 (210)
Q Consensus 117 ~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG~---~~i~pe~ay~~ 193 (210)
+|+.||+|.+||++++.||++|++++..+.|+.|.+|.+++|+ ||+++|.+|++|. +.|+|+++|..
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~----------g~e~al~~m~~Ge~~~~~vp~~~ayg~ 73 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIP----------GLEEALIGMKVGEKREFYVPPELAYGE 73 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSH----------HHHHHHTTSBTTEEEEEEEEGGGTTTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCcccc----------chhhhcccccCCCEeeeEeCChhhcCc
Confidence 3999999999999999999999999988899999999999999 7788888998885 78999999998
Q ss_pred hhcCC
Q 028345 194 WFYNG 198 (210)
Q Consensus 194 ~~~~~ 198 (210)
...+.
T Consensus 74 ~~~~~ 78 (94)
T PF00254_consen 74 KGLEP 78 (94)
T ss_dssp TTBCT
T ss_pred cccCC
Confidence 87754
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.1e-12 Score=108.69 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCcee---eEEecCcccchh
Q 028345 117 EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLS---FETCFPIFIWWL 193 (210)
Q Consensus 117 ~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG---~~~i~pe~ay~~ 193 (210)
.+.+||.|.+||++++.||++||+|...+.|+.|.+|.|++|+|| +.+|.+|++| +++|+||.||.+
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~gl----------E~al~g~~~Ge~~~V~IpPE~AfGe 71 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGL----------EEALLGKEVGEEFTVEIPPEDAFGE 71 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhH----------HHHHhCCCCCceeEEEeCchHhcCC
Confidence 478999999999999999999999988678999999999999955 4556666655 799999999999
Q ss_pred hhcCCCccc
Q 028345 194 WFYNGSKTI 202 (210)
Q Consensus 194 ~~~~~~~~~ 202 (210)
|.++.-..+
T Consensus 72 ~~~~lvq~v 80 (174)
T COG1047 72 YDPDLVQRV 80 (174)
T ss_pred CChHHeEEe
Confidence 999865544
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.17 E-value=5.2e-11 Score=100.69 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCcee---eEEecCcccchh
Q 028345 117 EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLS---FETCFPIFIWWL 193 (210)
Q Consensus 117 ~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG---~~~i~pe~ay~~ 193 (210)
++++++.|+++|+.++.||++||+|+. ++|+.|.+|.+++|| ||+.+|.+|++| .++|+|+.||..
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lip----------glE~aL~G~~~Gd~~~v~l~peeAyGe 70 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLIS----------GLETALEGHEVGDKFDVAVGANDAYGQ 70 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchH----------HHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 478899999999999999999999986 589999999999999 455556666666 689999999999
Q ss_pred hhcCCCcc
Q 028345 194 WFYNGSKT 201 (210)
Q Consensus 194 ~~~~~~~~ 201 (210)
|+++.-.+
T Consensus 71 ~d~~lV~~ 78 (196)
T PRK10737 71 YDENLVQR 78 (196)
T ss_pred CChHHEEE
Confidence 99875443
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.4e-09 Score=94.55 Aligned_cols=61 Identities=36% Similarity=0.672 Sum_probs=53.7
Q ss_pred EcCCCcC-CCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCceee
Q 028345 111 VVGVGPE-AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLSF 182 (210)
Q Consensus 111 ~~G~G~~-p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG~ 182 (210)
++|+|.. |..||.|.+||+|++.||+.||||.+ ++|+.|.+|.|++|. ||++|+..|+.|.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~----------~~~~gv~tm~~g~ 62 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIK----------GWDLGVATMKKGE 62 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCcccc----------ccccccccccccc
Confidence 4788877 99999999999999999999999999 899999999999999 5666667776543
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6e-08 Score=89.28 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=64.1
Q ss_pred CCCcEEEEEEcCCC--cCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecC-CcccccccccccccchhHHhhhcC
Q 028345 102 PSGLAFCDKVVGVG--PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGV-GEVCNQCANKSNRVKSWSLEFDNN 178 (210)
Q Consensus 102 ~sGl~~~~l~~G~G--~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~-g~VIpGlee~~~~~kG~~~g~~~m 178 (210)
+.+|..+++++|.| ..|.+|.+|.|||.|++.|+ +|+++. ..|.|.+|. ..||. |++.++..|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~----------Gle~al~~M 148 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIE----------GLEIALRMM 148 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhH----------HHHHHHHhc
Confidence 89999999999999 56999999999999999888 887664 347888886 46888 666666777
Q ss_pred cee---eEEecCcccch
Q 028345 179 QLS---FETCFPIFIWW 192 (210)
Q Consensus 179 ~vG---~~~i~pe~ay~ 192 (210)
++| .++|.|+|||.
T Consensus 149 ~~GE~a~v~i~~~YayG 165 (397)
T KOG0543|consen 149 KVGEVALVTIDPKYAYG 165 (397)
T ss_pred CccceEEEEeCcccccC
Confidence 666 58999999998
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.37 E-value=0.00048 Score=63.57 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=46.6
Q ss_pred cCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCceee
Q 028345 116 PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLSF 182 (210)
Q Consensus 116 ~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG~ 182 (210)
..+..||.|.++|+++. ||+.|+++. ..++.|.+|.+.+++ ||+.+|.+|++|.
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~----------~~ee~L~G~k~Gd 198 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIP----------GFEEQLVGMKAGE 198 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcch----------hHHHHhCCCCCCC
Confidence 35788999999999976 899999875 468999999999999 7777888888885
No 15
>PRK01490 tig trigger factor; Provisional
Probab=97.25 E-value=0.0006 Score=63.52 Aligned_cols=54 Identities=17% Similarity=0.359 Sum_probs=46.8
Q ss_pred cCCCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCceee
Q 028345 116 PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLSF 182 (210)
Q Consensus 116 ~~p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG~ 182 (210)
..+..||.|.++|++.. ||+.|+.+. .+++.|.+|.+++++ ||+.+|.+|++|.
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~----------~fee~L~G~k~Ge 209 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIP----------GFEEQLVGMKAGE 209 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcch----------hHHHHhCCCCCCC
Confidence 34799999999999998 899998764 368999999999999 7778899999886
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00059 Score=64.36 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=50.4
Q ss_pred CCCCCEEEEEEEEEeCCCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhcCceee-----EEecCcccch
Q 028345 118 AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDNNQLSF-----ETCFPIFIWW 192 (210)
Q Consensus 118 p~~Gd~V~vhY~g~l~dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~m~vG~-----~~i~pe~ay~ 192 (210)
+..||+|+|+|.|+. ||..|...-. +-+.|.+|+|+.|| ||+.+|.||+.|. +++|.+|.--
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fip----------gFe~~LvG~k~Ge~k~i~vtFP~dy~a~ 224 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIP----------GFEDQLVGMKAGEEKDIKVTFPEDYHAE 224 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchh----------hHHhhhccCcCCCeeEEEEEcccccchh
Confidence 899999999999955 8999887543 56899999999999 7788899999885 4566565443
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0023 Score=56.74 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=58.7
Q ss_pred CCCcEEEEEEcCCCcC--CCCCCEEEEEEEEEeC--CCcEEecccCCCCCEEEEecCCcccccccccccccchhHHhhhc
Q 028345 102 PSGLAFCDKVVGVGPE--AVKGQLIKAHYVGKLE--NGKVFDSSYNRGKPLIFRLGVGEVCNQCANKSNRVKSWSLEFDN 177 (210)
Q Consensus 102 ~sGl~~~~l~~G~G~~--p~~Gd~V~vhY~g~l~--dG~vFDSS~~~g~P~~F~lG~g~VIpGlee~~~~~kG~~~g~~~ 177 (210)
..||+.+++..|+|.- -..|..|.+||..... .++++|+|...|+|..+.+|..=-++ -|+.-+..
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~----------VwE~il~t 78 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLE----------VWEIILTT 78 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccH----------HHHHHHHH
Confidence 3789999999999976 5689999999999876 47899999999999999998544444 67777777
Q ss_pred Cceee
Q 028345 178 NQLSF 182 (210)
Q Consensus 178 m~vG~ 182 (210)
|+++.
T Consensus 79 M~v~E 83 (329)
T KOG0545|consen 79 MRVHE 83 (329)
T ss_pred Hhhhh
Confidence 77664
No 18
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=0.2 Score=38.17 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=35.8
Q ss_pred ccccccchhHHhhhcCceeeEEecCcccchhhhcCCCcccc
Q 028345 163 NKSNRVKSWSLEFDNNQLSFETCFPIFIWWLWFYNGSKTII 203 (210)
Q Consensus 163 e~~~~~kG~~~g~~~m~vG~~~i~pe~ay~~~~~~~~~~~~ 203 (210)
.....||||++|+..|.+|..-=...-.=|+|...|.+..|
T Consensus 52 GkgeVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~~I 92 (108)
T KOG0544|consen 52 GKGEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPGGI 92 (108)
T ss_pred cCcceeechhhcchhccccccceeeeccccccCCCCCCCcc
Confidence 45568999999999999999999999999999999876654
No 19
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=64.31 E-value=11 Score=26.43 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=4.5
Q ss_pred hhHHHHH
Q 028345 62 RRREAIG 68 (210)
Q Consensus 62 ~RR~~l~ 68 (210)
+||.||.
T Consensus 10 sRR~Flk 16 (66)
T TIGR02811 10 SRRDLLK 16 (66)
T ss_pred cHHHHHH
Confidence 4777754
No 20
>PRK09774 fec operon regulator FecR; Reviewed
Probab=58.69 E-value=56 Score=29.31 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=38.5
Q ss_pred eeeCCCCcEEEEEEcCCCcCCCCCCEEEEEEEEE-----eCCCcE-EecccCC-CCCEEEEecCCcc
Q 028345 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGK-----LENGKV-FDSSYNR-GKPLIFRLGVGEV 157 (210)
Q Consensus 98 ~~~~~sGl~~~~l~~G~G~~p~~Gd~V~vhY~g~-----l~dG~v-FDSS~~~-g~P~~F~lG~g~V 157 (210)
+.+.....+-..|-.|+--....++.+.++|... |.+|+. |+-..+. .+||.+..|.+.+
T Consensus 111 ~~T~~Ge~r~v~L~DGS~v~Ln~~S~l~~~~~~~~R~v~L~~Gea~F~Va~d~~~rPF~V~t~~~~v 177 (319)
T PRK09774 111 YRTAKGEVSRQRLEDGSLLTLNTQSAVDVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQL 177 (319)
T ss_pred eecCCCceEEEEcCCCCEEEEcCCCeEEEeecCCeeEEEEeccEEEEEEcCCCCCCCEEEEeCCcEE
Confidence 4444444444445445555577888899988643 458987 6666665 4899888776533
No 21
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=53.31 E-value=48 Score=30.36 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=45.5
Q ss_pred CCeeeCCCCcEEEEEEcCCCcCCCCCCEEEEEEEEE-----eCCCcE-EecccCCCCCEEEEecCCcc
Q 028345 96 CELTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGK-----LENGKV-FDSSYNRGKPLIFRLGVGEV 157 (210)
Q Consensus 96 ~~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~vhY~g~-----l~dG~v-FDSS~~~g~P~~F~lG~g~V 157 (210)
.+|.|......-..|..|+=-+...++.|.|.|... |..|+. |+...+...||.+.-|.|.+
T Consensus 113 ady~Ta~GErR~v~L~DGS~l~Lnt~Sav~vr~~~~~R~VrL~rGea~f~va~d~~RPFvV~a~~g~v 180 (322)
T COG3712 113 ADYATATGERRDVTLADGSRLELNTRSAVDVRFDAGQRRVRLLRGEALFDVAHDPARPFVVDAGDGRV 180 (322)
T ss_pred hhhhccCCceEEEEeCCCCEEEEcCCCeEEEEecCCeeEEEEecceEEEEecCCCCCCeEEEcCCceE
Confidence 346666666777777767766688889999998764 568886 77787766899888876544
No 22
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=49.47 E-value=20 Score=20.48 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHhhhh
Q 028345 61 FRRREAIGFGLCFGLVD 77 (210)
Q Consensus 61 ~~RR~~l~~~l~~~~~~ 77 (210)
++||.+|..+++++...
T Consensus 2 ~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 46999977766555443
No 23
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=49.07 E-value=15 Score=27.98 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=12.7
Q ss_pred CCCCCeeeCCCCcEEEE
Q 028345 93 PSPCELTVAPSGLAFCD 109 (210)
Q Consensus 93 ~~~~~~~~~~sGl~~~~ 109 (210)
..+.++++++|||+|++
T Consensus 108 ~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 108 AKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HTSTTEEE-TTS-EEEE
T ss_pred cCCCCCEECCCCCeeeC
Confidence 46678999999999986
No 24
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=43.77 E-value=22 Score=31.56 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=17.3
Q ss_pred cccccCCccccccCCCCCCchhhHHHHHHHHHHhhhhh
Q 028345 41 QQQNSCPPQKLHHLNENPTPFRRREAIGFGLCFGLVDV 78 (210)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~RR~~l~~~l~~~~~~~ 78 (210)
..+..|..|.+ .....+||.+|.+.++++.+..
T Consensus 35 ~~~~~~~~~~~-----~~~~~srr~~l~~~~ga~a~~~ 67 (260)
T PLN00042 35 PSQVVCRAQEE-----DNSAVSRRAALALLAGAAAAGA 67 (260)
T ss_pred Ccceeeecccc-----ccccccHHHHHHHHHHHHHhhc
Confidence 34455655542 1233568877766665544333
No 25
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=33.18 E-value=71 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.001 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHhhhhhhhc
Q 028345 62 RRREAIGFGLCFGLVDVVLQ 81 (210)
Q Consensus 62 ~RR~~l~~~l~~~~~~~~~~ 81 (210)
.||..|-..|++.+..++++
T Consensus 2 aRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 2 ARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred chhhHHHHHHHHHHHHHhhc
Confidence 47777555566665555543
No 26
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=27.64 E-value=81 Score=23.06 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=33.1
Q ss_pred CcCCCCCCEEEEEEEEEeCCCcEEecccC-CCCCEEEEecCCcc
Q 028345 115 GPEAVKGQLIKAHYVGKLENGKVFDSSYN-RGKPLIFRLGVGEV 157 (210)
Q Consensus 115 G~~p~~Gd~V~vhY~g~l~dG~vFDSS~~-~g~P~~F~lG~g~V 157 (210)
|..+-.-|...++=.|...||.++.+.|+ .|+-+++.+|.+.-
T Consensus 10 ~va~Ya~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~~~ 53 (79)
T PF11012_consen 10 GVAPYAAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSGTY 53 (79)
T ss_pred CCCCccccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCeEE
Confidence 45666778888888888889988888765 46788888886543
No 27
>PHA02122 hypothetical protein
Probab=27.14 E-value=1e+02 Score=21.34 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.2
Q ss_pred CCCCEEEEEEEEEeCCCcEEe
Q 028345 119 VKGQLIKAHYVGKLENGKVFD 139 (210)
Q Consensus 119 ~~Gd~V~vhY~g~l~dG~vFD 139 (210)
..||-|.++|.... ||+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 46899999999877 787764
No 28
>PRK15368 pathogenicity island chaperone protein SpiC; Provisional
Probab=25.35 E-value=55 Score=25.89 Aligned_cols=23 Identities=13% Similarity=-0.174 Sum_probs=15.0
Q ss_pred hhhcCceeeEEecCcccchhhhcC
Q 028345 174 EFDNNQLSFETCFPIFIWWLWFYN 197 (210)
Q Consensus 174 g~~~m~vG~~~i~pe~ay~~~~~~ 197 (210)
|...-+.=.+... +.+||+|||-
T Consensus 67 A~~d~hDyAlQL~-~~~~WL~c~Y 89 (127)
T PRK15368 67 AHPDVHDYAIQLT-ADGGWLNGYY 89 (127)
T ss_pred hCCCchhheeEec-cCcEEEEEEE
Confidence 4444444455665 5789999985
No 29
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=25.00 E-value=31 Score=28.66 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=11.6
Q ss_pred EEecCcccchhhhcCC
Q 028345 183 ETCFPIFIWWLWFYNG 198 (210)
Q Consensus 183 ~~i~pe~ay~~~~~~~ 198 (210)
+|-..||||| |++.|
T Consensus 59 RR~l~DfGYW-Y~PDG 73 (164)
T PF04315_consen 59 RRQLEDFGYW-YCPDG 73 (164)
T ss_pred ccccccCCCC-cCCCC
Confidence 5677799999 67665
No 30
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=22.55 E-value=2.9e+02 Score=27.28 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=13.3
Q ss_pred CCCCCEEEEEEEEEeCC
Q 028345 118 AVKGQLIKAHYVGKLEN 134 (210)
Q Consensus 118 p~~Gd~V~vhY~g~l~d 134 (210)
+.+||.|.|+++-.+..
T Consensus 80 ~~~Gd~v~v~v~N~l~~ 96 (587)
T TIGR01480 80 WREGDTVRLRVTNTLPE 96 (587)
T ss_pred EECCCEEEEEEEcCCCC
Confidence 78999999988766543
No 31
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=21.57 E-value=76 Score=18.31 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHH
Q 028345 62 RRREAIGFGLCF 73 (210)
Q Consensus 62 ~RR~~l~~~l~~ 73 (210)
+||.+|..+...
T Consensus 2 sRR~Flk~~~~~ 13 (29)
T TIGR01409 2 SRRDFLKGAAAA 13 (29)
T ss_pred chhhhHHHHHHH
Confidence 689887765433
No 32
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=20.11 E-value=53 Score=20.96 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=4.3
Q ss_pred chhhHHHHH
Q 028345 60 PFRRREAIG 68 (210)
Q Consensus 60 ~~~RR~~l~ 68 (210)
..+||.+|.
T Consensus 8 ~~~RRdFL~ 16 (41)
T PF10399_consen 8 DPTRRDFLT 16 (41)
T ss_dssp --HHHHHHH
T ss_pred CchHHHHHH
Confidence 345777753
Done!