BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028346
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y3B2|EXOS1_HUMAN Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1
Length = 195
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFR 132
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRATE DKV+++ SFR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFR 123
Query: 133 PGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAG 169
PGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G
Sbjct: 124 PGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESG 161
>sp|Q9DAA6|EXOS1_MOUSE Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=2 SV=1
Length = 195
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFR 132
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR++D+RATE DKV+++ SFR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFR 123
Query: 133 PGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAG 169
PGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G
Sbjct: 124 PGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESG 161
>sp|O59821|CSL4_SCHPO Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=csl4 PE=3 SV=2
Length = 181
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 12/160 (7%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
M LV PG+V+ + A G K + ++ TG+ P +S VE T
Sbjct: 1 MNLVLPGQVVARG----APNGEGTVKRGDYIISTRTGIF---DPEKNSVTYPRKVEETA- 52
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDM 127
+P GS+V+ARV+++ R A+ +I V +++F G+I QD+RATE +KV +
Sbjct: 53 ----VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKV 108
Query: 128 HLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST 167
SFRPGDIVRA V+SLGD +YFL+TA+NDLGV+ A+S+
Sbjct: 109 QNSFRPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSS 148
>sp|P53859|CSL4_YEAST Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CSL4 PE=1 SV=1
Length = 292
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 36/157 (22%)
Query: 53 PDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAK---------- 102
P + R T + + +P+ G +V+ RVT++ + A+ +I+ V K
Sbjct: 112 PGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGS 171
Query: 103 ------------------------SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVR 138
+ E F GIIR QDVR+T+ D+V + F+PGDIVR
Sbjct: 172 NGSGIVAAGGGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVR 231
Query: 139 ASVLSLGDARAYFLSTAKNDLGVV--SAESTAGKLVY 173
A VLSLGD Y+L+TA+NDLGVV A + AG L+Y
Sbjct: 232 AQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMY 268
>sp|Q32CG3|CYSJ_SHIDS Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=cysJ PE=3 SV=1
Length = 599
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSDLRYQPGD 274
>sp|Q83QD9|CYSJ_SHIFL Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella
flexneri GN=cysJ PE=3 SV=3
Length = 599
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|Q0T1I8|CYSJ_SHIF8 Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella
flexneri serotype 5b (strain 8401) GN=cysJ PE=3 SV=1
Length = 599
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|Q31XM4|CYSJ_SHIBS Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella
boydii serotype 4 (strain Sb227) GN=cysJ PE=3 SV=1
Length = 599
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|B1IU77|CYSJ_ECOLC Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
Crooks) GN=cysJ PE=3 SV=1
Length = 599
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|A7ZQK7|CYSJ_ECO24 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
GN=cysJ PE=3 SV=1
Length = 599
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|Q3YY94|CYSJ_SHISS Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella
sonnei (strain Ss046) GN=cysJ PE=3 SV=1
Length = 599
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|A8A3P5|CYSJ_ECOHS Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli O9:H4 (strain HS) GN=cysJ PE=3 SV=1
Length = 599
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDSPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|Q8X7U1|CYSJ_ECO57 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli O157:H7 GN=cysJ PE=3 SV=3
Length = 599
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGVVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|P38038|CYSJ_ECOLI Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli (strain K12) GN=cysJ PE=1 SV=4
Length = 599
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D V + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D + ++PGD
Sbjct: 262 DLGDSGMRYQPGD 274
>sp|Q1R7T4|CYSJ_ECOUT Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli (strain UTI89 / UPEC) GN=cysJ PE=3
SV=1
Length = 599
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGTVNEIHTSPYSKDAPLAASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|Q0TEA2|CYSJ_ECOL5 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=cysJ PE=3 SV=1
Length = 599
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGTVNEIHTSPYSKDAPLAASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|A1AEV0|CYSJ_ECOK1 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli O1:K1 / APEC GN=cysJ PE=3 SV=1
Length = 599
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGTVNEIHTSPYSKDAPLAASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|Q8FEI7|CYSJ_ECOL6 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /
UPEC) GN=cysJ PE=3 SV=3
Length = 599
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V K+ PV P SV V ++ T S D + SV +K +G ++DVR EI
Sbjct: 202 VDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLAASLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|P38039|CYSJ_SALTY Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=cysJ PE=3 SV=2
Length = 599
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 68 KAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVD 126
K+ PV P SV V + T + D + SV +K +G ++DVR EID D
Sbjct: 206 KSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGD 265
Query: 127 MHLSFRPGD 135
L ++PGD
Sbjct: 266 SGLRYQPGD 274
>sp|Q8TYC0|ECR1_METKA Probable exosome complex RNA-binding protein 1 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0382 PE=3 SV=1
Length = 239
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 35/161 (21%)
Query: 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVT 65
E+ +VTPGE+L + +V A +G Y + VY+ +TGL V++
Sbjct: 9 EDRQVVTPGELLARG-QVIASEGTYTSGDE--VYSKVTGL----------------VDID 49
Query: 66 GHKAH-----GPV-PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRA 119
G + GP P PG V+ V +V + +S I VR I+ +
Sbjct: 50 GRRIRVIPLAGPYRPSPGDFVVGIVEEV--KFSSWLI------DVRAPLPAILHVSNALE 101
Query: 120 TEIDKVDMHLS--FRPGDIVRASVLSLGDARAYFLSTAKND 158
E+D ++ LS +RPGD++ A V + + LS ++D
Sbjct: 102 EEVDLIETDLSRYYRPGDVITAVVREVDPVQRVELSLLEDD 142
>sp|Q57KH7|CYSJ_SALCH Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Salmonella choleraesuis (strain SC-B67) GN=cysJ PE=3
SV=3
Length = 599
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 68 KAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVD 126
K+ PV P SV V + T + D + SV +K +G ++DVR EID D
Sbjct: 206 KSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGD 265
Query: 127 MHLSFRPGD 135
L ++PGD
Sbjct: 266 SGLRYQPGD 274
>sp|A9N2E6|CYSJ_SALPB Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
GN=cysJ PE=3 SV=1
Length = 599
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 68 KAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVD 126
K+ PV P SV V + T + D SV +K +G ++DVR EID D
Sbjct: 206 KSRAPVAAPSQSVATGSVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGD 265
Query: 127 MHLSFRPGD 135
L ++PGD
Sbjct: 266 SGLRYQPGD 274
>sp|Q5PEH7|CYSJ_SALPA Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=cysJ PE=3 SV=3
Length = 599
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 68 KAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVD 126
K+ PV P SV V + T + D SV +K +G ++DVR EID D
Sbjct: 206 KSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGD 265
Query: 127 MHLSFRPGD 135
L ++PGD
Sbjct: 266 SGLRYQPGD 274
>sp|Q8Z458|CYSJ_SALTI Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Salmonella typhi GN=cysJ PE=3 SV=3
Length = 599
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 68 KAHGPVPEPG-SVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVD 126
K+ PV P SV V + T + D SV +K +G ++DVR EID D
Sbjct: 206 KSRAPVAVPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGD 265
Query: 127 MHLSFRPGD 135
L ++PGD
Sbjct: 266 SGLRYQPGD 274
>sp|A6TD49|CYSJ_KLEP7 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=cysJ PE=3 SV=1
Length = 599
Score = 37.0 bits (84), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 64 VTGHKAHGPVPEPGSVVIA-RVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI 122
V KA PV P + + V + T + + SV +K +G ++DVR EI
Sbjct: 202 VEALKARAPVAAPAQLATSGAVNDIHTSPYTKEAPLTATLSVNQKITGRNSEKDVRHIEI 261
Query: 123 DKVDMHLSFRPGD 135
D D L ++PGD
Sbjct: 262 DLGDSGLRYQPGD 274
>sp|A9MF16|CYSJ_SALAR Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86
/ RSK2980) GN=cysJ PE=3 SV=1
Length = 599
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 68 KAHGPVPEP-GSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVD 126
K+ PV P SVV V ++ T + + + SV +K +G ++DVR EID D
Sbjct: 206 KSRTPVTTPVPSVVSGAVNEIHTSPYTKEAPLRASLSVNQKITGRNSEKDVRHIEIDLGD 265
Query: 127 MHLSFRPGD 135
L ++PGD
Sbjct: 266 SGLCYQPGD 274
>sp|A5UJS0|ECR1_METS3 Probable exosome complex RNA-binding protein 1
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0243 PE=3 SV=1
Length = 298
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVT 65
E LV PGEVL E +G+G + K NG + +SL GL+ + + V
Sbjct: 5 ENKDLVIPGEVLA-DDEYYSGRGTF--KENGKICSSLMGLVSL---------RNKKIRVI 52
Query: 66 GHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKV 125
K+ VP+ G VVI ++ V M DI +SGI+ +V E K
Sbjct: 53 PLKSK-YVPKKGDVVIGKIKDVRFSMWDVDI--------NSPYSGILPAFEVFGRE--KK 101
Query: 126 DMHLSFRPGDIV 137
+++ F GD++
Sbjct: 102 ELNKVFDVGDVL 113
>sp|Q09704|RRP4_SCHPO Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rrp4 PE=3 SV=1
Length = 329
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LVTPG+++ + G G Y +G +YAS+ G ++ ++ R
Sbjct: 57 LVTPGQLVTDDPQFMRGHGTYF--EDGGIYASVAGSVQRVNKLISVKPLRSKY------- 107
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAK-------SVREKFSGIIRQQDVRATEI 122
VPE G ++I ++ +V + DI GAK S GI R R E
Sbjct: 108 ---VPEIGDLIIGKIAEVQPKRWKVDI---GAKQNAVLMLSSINLPGGIQR----RKLET 157
Query: 123 DKVDMHLSFRPGDIVRASV 141
D++ M F+ GD++ A V
Sbjct: 158 DELQMRSFFQEGDLLVAEV 176
>sp|A8G9X6|CYSJ_SERP5 Sulfite reductase [NADPH] flavoprotein alpha-component OS=Serratia
proteamaculans (strain 568) GN=cysJ PE=3 SV=1
Length = 599
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 58 QRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDV 117
++ VEV +A PG + V + + S + +V++K +G +DV
Sbjct: 197 RKQVVEVLKARAPAENAAPGVLASGAVDLLDSSPYSKEQPLTAQLAVKQKITGRASDKDV 256
Query: 118 RATEIDKVDMHLSFRPGDIV 137
R EID D L +RPGD +
Sbjct: 257 RHIEIDLGDSGLRYRPGDAL 276
>sp|A4WDW1|CYSJ_ENT38 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Enterobacter sp. (strain 638) GN=cysJ PE=3 SV=1
Length = 601
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 84 VTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGD 135
V +V T + + V + SV +K +G ++DVR EID D L ++PGD
Sbjct: 225 VNEVSTSPYTKEEPLVASLSVNQKITGRDSEKDVRHIEIDLGDSGLRYQPGD 276
>sp|Q5JIR5|ECR1_PYRKO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1635 PE=3 SV=1
Length = 257
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 35/153 (22%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH-- 67
LV PG +L + K G+G + + +Y+++ GL VE+ G+
Sbjct: 11 LVVPGTLLAQGP-FKNGRGTF--REGNAIYSTVIGL----------------VEIRGNVI 51
Query: 68 ---KAHGP-VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID 123
GP +PE G V+ ++ V + DI GA + +R QD ID
Sbjct: 52 RVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDI---GAP-----YQASLRVQDAVEERID 103
Query: 124 --KVDMHLSFRPGDIVRASVLSLGDARAYFLST 154
K D+ F GDI+ A V + + L+T
Sbjct: 104 LLKTDLRKIFDIGDIIYAKVKAFNEVNQIDLTT 136
>sp|Q8ZBN6|CYSJ_YERPE Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia
pestis GN=cysJ PE=3 SV=1
Length = 606
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIV 137
SV++K +G ++DVR EID D L ++PGD +
Sbjct: 249 SVQQKVTGRNSEKDVRHIEIDLGDSGLRYQPGDAL 283
>sp|Q1C3Z0|CYSJ_YERPA Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia
pestis bv. Antiqua (strain Antiqua) GN=cysJ PE=3 SV=1
Length = 606
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIV 137
SV++K +G ++DVR EID D L ++PGD +
Sbjct: 249 SVQQKVTGRNSEKDVRHIEIDLGDSGLRYQPGDAL 283
>sp|A4TPY5|CYSJ_YERPP Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia
pestis (strain Pestoides F) GN=cysJ PE=3 SV=1
Length = 612
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIV 137
SV++K +G ++DVR EID D L ++PGD +
Sbjct: 255 SVQQKVTGRNSEKDVRHIEIDLGDSGLRYQPGDAL 289
>sp|Q1CLS8|CYSJ_YERPN Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia
pestis bv. Antiqua (strain Nepal516) GN=cysJ PE=3 SV=1
Length = 612
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIV 137
SV++K +G ++DVR EID D L ++PGD +
Sbjct: 255 SVQQKVTGRNSEKDVRHIEIDLGDSGLRYQPGDAL 289
>sp|A7FLZ0|CYSJ_YERP3 Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=cysJ PE=3 SV=1
Length = 612
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIV 137
SV++K +G ++DVR EID D L ++PGD +
Sbjct: 255 SVQQKVTGRNSEKDVRHIEIDLGDSGLRYQPGDAL 289
>sp|Q66ED4|CYSJ_YERPS Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=cysJ
PE=3 SV=1
Length = 618
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIV 137
SV++K +G ++DVR EID D L ++PGD +
Sbjct: 261 SVQQKVTGRNSEKDVRHIEIDLGDSGLRYQPGDAL 295
>sp|A7MJ63|CYSJ_CROS8 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=cysJ
PE=3 SV=1
Length = 600
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGD 135
SV +K +G ++DVR EID D L ++PGD
Sbjct: 243 SVNQKITGRHSEKDVRHIEIDLGDAGLRYQPGD 275
>sp|A1JJS2|CYSJ_YERE8 Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=cysJ PE=3 SV=1
Length = 601
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGD 135
SV++K +G ++DVR EID D L ++PGD
Sbjct: 244 SVQQKVTGRNSEKDVRHIEIDLGDSGLRYQPGD 276
>sp|Q2NEX6|ECR1_METST Probable exosome complex RNA-binding protein 1 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1250 PE=3 SV=1
Length = 222
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 1 MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP 60
+ V+ +E+VL PG +L K G+G Y K NG +Y+S+TGL+ S +Q
Sbjct: 2 IFVENKEIVL--PGSLL-TDNNYKLGRGTY--KENGKIYSSITGLVYFES------EQIK 50
Query: 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADI 96
+ + + P G +VI RVT S DI
Sbjct: 51 VIPLKDTYS----PNYGDLVIGRVTGSSYSSWSIDI 82
>sp|Q5RAJ8|TIM50_PONAB Mitochondrial import inner membrane translocase subunit TIM50
OS=Pongo abelii GN=TIMM50 PE=2 SV=1
Length = 353
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 34 HNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMA 92
+GL S R +PPP +PDQ + G KA GP +PGS + KV +A
Sbjct: 12 RSGLRLGSRGLCTRLATPPPRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSYAKKVALWLA 71
>sp|Q7NAM4|RL9_MYCGA 50S ribosomal protein L9 OS=Mycoplasma gallisepticum (strain R(low
/ passage 15 / clone 2)) GN=rplI PE=3 SV=1
Length = 147
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 86 KVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDK 124
KV+ R D++ + AK++ ++ G++ + D+R E DK
Sbjct: 50 KVIKRNEQHDLLALEAKNLAKQLEGVVLEYDIRTNEEDK 88
>sp|Q5NRM1|CYSJ_ZYMMO Sulfite reductase [NADPH] flavoprotein alpha-component OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=cysJ PE=3 SV=1
Length = 606
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGD 135
SV +K +G +DVR EID D L ++PGD
Sbjct: 248 SVNQKITGRHSDKDVRHIEIDLGDSGLHYKPGD 280
>sp|A8ANX1|CYSJ_CITK8 Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=cysJ PE=3 SV=1
Length = 601
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 103 SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGD 135
+V +K +G ++DVR EID D L ++PGD
Sbjct: 244 AVNQKITGRDSEKDVRHIEIDLGDSGLRYQPGD 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,417,588
Number of Sequences: 539616
Number of extensions: 2847157
Number of successful extensions: 9061
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9022
Number of HSP's gapped (non-prelim): 53
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)