BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028349
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
           Complexed With Galactose
          Length = 419

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 29/67 (43%)

Query: 102 EAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPXXXXXXXXXXXXXXCC 161
           +A+ +GN   FG+L++AS  S   +YE     L  L E  Q+                C 
Sbjct: 315 KAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCA 374

Query: 162 LALVDAD 168
           +ALV  D
Sbjct: 375 IALVAHD 381


>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
          Length = 399

 Score = 27.7 bits (60), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 1/99 (1%)

Query: 103 AWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPXXXXXXXXXXXXXXCCL 162
           A + G+ + FG+L   S  S   +YE     L QL E     P              C +
Sbjct: 301 ALRRGDYRAFGRLXVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRXTGGGFGGCTV 360

Query: 163 ALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLIC 201
            L++A  A  A  +++  Y        SQ  AD A ++C
Sbjct: 361 TLLEASAAPHAXRHIQEHYGGTATFYLSQ-AADGAKVLC 398


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,420,195
Number of Sequences: 62578
Number of extensions: 182275
Number of successful extensions: 334
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)