Query 028349
Match_columns 210
No_of_seqs 221 out of 1438
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 10:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 4.8E-41 1E-45 308.0 15.7 166 5-210 213-389 (390)
2 PLN02865 galactokinase 100.0 1.2E-40 2.5E-45 310.5 16.9 173 5-210 235-423 (423)
3 PTZ00290 galactokinase; Provis 100.0 3.2E-37 6.9E-42 290.4 16.9 172 5-210 255-456 (468)
4 PRK05101 galactokinase; Provis 100.0 6.1E-36 1.3E-40 274.6 16.5 165 5-209 209-381 (382)
5 PLN02521 galactokinase 100.0 6.7E-34 1.5E-38 269.7 13.7 129 48-210 359-494 (497)
6 PRK05322 galactokinase; Provis 100.0 2E-33 4.4E-38 258.5 16.3 166 5-210 210-387 (387)
7 PRK00555 galactokinase; Provis 100.0 3.3E-32 7.2E-37 248.6 17.3 165 5-210 191-362 (363)
8 TIGR00131 gal_kin galactokinas 100.0 3.6E-32 7.9E-37 249.1 15.6 166 5-210 208-386 (386)
9 PRK03817 galactokinase; Provis 100.0 2.1E-27 4.5E-32 214.8 16.9 160 6-210 184-350 (351)
10 KOG0631 Galactokinase [Carbohy 99.9 5.4E-25 1.2E-29 206.0 10.0 134 48-210 353-487 (489)
11 PTZ00298 mevalonate kinase; Pr 99.6 1.9E-14 4.2E-19 129.7 13.8 82 101-184 231-313 (328)
12 PF08544 GHMP_kinases_C: GHMP 99.6 8.6E-15 1.9E-19 105.9 7.9 81 101-182 2-84 (85)
13 COG1577 ERG12 Mevalonate kinas 99.5 2.4E-14 5.2E-19 129.3 10.4 65 101-167 217-281 (307)
14 TIGR00549 mevalon_kin mevalona 99.5 1.8E-14 3.9E-19 125.1 8.6 62 101-164 212-273 (273)
15 PRK03926 mevalonate kinase; Pr 99.5 2E-13 4.3E-18 120.7 13.5 93 101-209 205-298 (302)
16 TIGR01220 Pmev_kin_Gr_pos phos 99.4 1.5E-12 3.3E-17 119.1 9.8 77 101-179 262-344 (358)
17 PLN02677 mevalonate kinase 99.4 3.1E-12 6.7E-17 118.8 11.4 74 107-183 291-364 (387)
18 PRK13412 fkp bifunctional fuco 99.4 4E-12 8.7E-17 128.9 13.0 77 101-179 872-950 (974)
19 COG2605 Predicted kinase relat 99.3 1E-11 2.3E-16 111.5 11.7 79 101-180 234-313 (333)
20 KOG1511 Mevalonate kinase MVK/ 98.9 3.1E-08 6.7E-13 91.1 12.8 70 111-183 293-362 (397)
21 PRK01212 homoserine kinase; Pr 98.9 1.7E-08 3.6E-13 89.5 10.7 95 101-210 205-301 (301)
22 PLN02451 homoserine kinase 98.8 6.4E-08 1.4E-12 89.5 12.1 98 101-209 265-364 (370)
23 PRK00128 ipk 4-diphosphocytidy 98.3 1.5E-06 3.2E-11 76.6 6.9 73 101-180 198-272 (286)
24 TIGR00191 thrB homoserine kina 98.3 7.8E-06 1.7E-10 72.9 10.6 93 101-209 205-301 (302)
25 TIGR01920 Shik_kin_archae shik 98.1 1.4E-05 3E-10 70.4 7.9 67 101-179 187-253 (261)
26 PRK03188 4-diphosphocytidyl-2- 98.0 4.5E-05 9.7E-10 67.9 10.5 91 101-210 202-295 (300)
27 PRK02534 4-diphosphocytidyl-2- 98.0 2.9E-05 6.3E-10 69.6 8.7 93 101-209 215-310 (312)
28 PTZ00299 homoserine kinase; Pr 97.7 0.00026 5.7E-09 65.0 9.4 94 101-209 213-321 (336)
29 PRK01123 shikimate kinase; Pro 97.6 0.00038 8.2E-09 61.7 9.1 83 102-209 198-281 (282)
30 PRK14613 4-diphosphocytidyl-2- 97.4 0.00046 1E-08 61.9 7.7 76 101-183 212-289 (297)
31 TIGR00154 ispE 4-diphosphocyti 97.4 0.00065 1.4E-08 60.7 7.5 50 130-182 226-276 (293)
32 PRK14614 4-diphosphocytidyl-2- 97.3 0.00032 7E-09 62.2 5.4 47 130-179 221-268 (280)
33 TIGR01219 Pmev_kin_ERG8 phosph 97.3 0.0016 3.4E-08 62.3 9.3 73 108-182 353-430 (454)
34 PRK14612 4-diphosphocytidyl-2- 96.9 0.0012 2.6E-08 58.3 4.5 54 125-181 211-265 (276)
35 COG1907 Predicted archaeal sug 96.9 0.021 4.5E-07 52.0 12.2 97 101-209 208-310 (312)
36 TIGR00144 beta_RFAP_syn beta-R 96.8 0.016 3.5E-07 52.7 11.2 96 101-210 226-324 (324)
37 PRK14615 4-diphosphocytidyl-2- 96.7 0.0023 5E-08 57.4 5.0 47 130-179 239-286 (296)
38 PRK14609 4-diphosphocytidyl-2- 96.3 0.0027 5.8E-08 56.3 2.8 51 120-173 208-259 (269)
39 PRK14616 4-diphosphocytidyl-2- 96.3 0.011 2.5E-07 52.4 6.6 70 107-183 206-276 (287)
40 COG0083 ThrB Homoserine kinase 96.2 0.058 1.3E-06 49.1 10.8 95 101-210 201-297 (299)
41 PRK14608 4-diphosphocytidyl-2- 95.7 0.021 4.7E-07 50.9 5.5 47 130-179 229-277 (290)
42 PRK14610 4-diphosphocytidyl-2- 93.3 0.19 4.2E-06 44.7 5.8 48 130-179 221-269 (283)
43 KOG4644 L-fucose kinase [Carbo 90.5 2 4.4E-05 42.5 9.5 73 101-175 841-916 (948)
44 PRK14611 4-diphosphocytidyl-2- 79.2 7 0.00015 34.5 6.7 60 101-167 195-254 (275)
45 KOG1537 Homoserine kinase [Ami 73.9 14 0.00029 34.0 7.0 66 132-208 283-351 (355)
46 PRK00343 ipk 4-diphosphocytidy 73.8 6.6 0.00014 34.8 5.1 47 130-181 216-263 (271)
47 COG1947 IspE 4-diphosphocytidy 68.8 7.4 0.00016 35.4 4.3 47 130-179 224-271 (289)
48 PRK00650 4-diphosphocytidyl-2- 62.0 17 0.00037 32.9 5.3 50 130-182 205-259 (288)
49 PF03460 NIR_SIR_ferr: Nitrite 58.0 25 0.00054 24.1 4.5 48 129-179 21-68 (69)
50 PF03991 Prion_octapep: Copper 52.7 6.3 0.00014 17.3 0.4 6 153-158 2-7 (8)
51 TIGR01240 mevDPdecarb diphosph 42.3 2.6E+02 0.0057 25.3 11.0 78 101-181 217-304 (305)
52 PRK05905 hypothetical protein; 35.4 37 0.00079 30.2 3.0 25 130-156 222-246 (258)
53 COG0024 Map Methionine aminope 32.5 99 0.0021 27.7 5.2 57 109-165 14-72 (255)
54 PRK09636 RNA polymerase sigma 31.7 1E+02 0.0023 27.0 5.3 20 101-120 181-200 (293)
55 TIGR02957 SigX4 RNA polymerase 31.3 1E+02 0.0022 27.1 5.1 21 101-121 174-194 (281)
56 PLN02407 diphosphomevalonate d 31.2 3.4E+02 0.0074 25.4 8.7 81 101-183 241-333 (343)
57 cd06831 PLPDE_III_ODC_like_AZI 26.7 1E+02 0.0022 28.8 4.4 41 153-205 209-249 (394)
58 PRK09635 sigI RNA polymerase s 25.1 1.7E+02 0.0037 26.1 5.4 20 101-120 184-203 (290)
59 COG3064 TolA Membrane protein 24.3 72 0.0016 29.9 2.9 29 150-178 38-68 (387)
60 PF02153 PDH: Prephenate dehyd 23.2 2E+02 0.0042 25.0 5.4 18 101-118 241-258 (258)
61 KOG1925 Rac1 GTPase effector F 22.9 3.6E+02 0.0078 27.2 7.5 88 20-120 549-640 (817)
62 KOG3304 Surfeit family protein 21.8 79 0.0017 26.0 2.4 10 152-161 1-10 (148)
63 PF11126 Phage_DsbA: Transcrip 20.1 1.3E+02 0.0028 21.9 3.0 34 108-141 33-66 (69)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-41 Score=307.99 Aligned_cols=166 Identities=32% Similarity=0.465 Sum_probs=155.7
Q ss_pred ccCcchhhhhhhchH-------HHHHHHccc--cccCCCCHHHHHHhhccC--CHHHhhhhhhhhhhhhHHHHHHHhhhh
Q 028349 5 LCNGEYFHLILFSSF-------VILQLIMIL--IFFQTVEEEVYEAHKNEL--EPTLAKRAEHYFTENRRVAKGIAFLTW 73 (210)
Q Consensus 5 ~~~~~~~~~~~~~~~-------~~l~~~~g~--~~l~~v~~~~~~~~~~~l--~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~ 73 (210)
+=|++++|.+-.|+| +..-+.|++ ..|||+++++++++.+.+ +|..+||++|+++||+||+++
T Consensus 213 I~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a------ 286 (390)
T COG0153 213 IVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEA------ 286 (390)
T ss_pred EecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHH------
Confidence 458899999999999 346667788 999999999999999988 488999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEc
Q 028349 74 SFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 153 (210)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmt 153 (210)
++||+++|+++||+||++||.|||++|+|||||+|+||++|+...|++|||||
T Consensus 287 ---------------------------~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmT 339 (390)
T COG0153 287 ---------------------------AKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMT 339 (390)
T ss_pred ---------------------------HHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceec
Confidence 88999999999999999999999999999999999999999977888999999
Q ss_pred cCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 154 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 154 GgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
|||||||+|+|+|.+.+++|++.+.+.|++.+ |+++.+|+++|++|++++
T Consensus 340 GaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~-------g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 340 GAGFGGCVIALVPNDDVEAVAEAVAEEYEKVT-------GLKAAFYVVEASQGAGVC 389 (390)
T ss_pred CCCCCceEEEEechhhHHHHHHHHHHhHHhhc-------CccccEEEEeccCCcccc
Confidence 99999999999999999999999999999864 899999999999999874
No 2
>PLN02865 galactokinase
Probab=100.00 E-value=1.2e-40 Score=310.50 Aligned_cols=173 Identities=64% Similarity=0.992 Sum_probs=160.4
Q ss_pred ccCcchhhhhh-hchHH-----------HHHHHcc----ccccCCCCHHHHHHhhccCCHHHhhhhhhhhhhhhHHHHHH
Q 028349 5 LCNGEYFHLIL-FSSFV-----------ILQLIMI----LIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGI 68 (210)
Q Consensus 5 ~~~~~~~~~~~-~~~~~-----------~l~~~~g----~~~l~~v~~~~~~~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~ 68 (210)
++|+...|.+. .+.|. .|++.+| .++||+++++++.+++..|++.+++|++||++||+||.++
T Consensus 235 v~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~- 313 (423)
T PLN02865 235 LAFSGLRHALTNKPGYNLRVSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKG- 313 (423)
T ss_pred EEeCCCchhhcccchhhHHHHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-
Confidence 67899999998 67873 2444444 6789999999999999889999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCe
Q 028349 69 AFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVF 148 (210)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~ 148 (210)
++||+++|++.||+||++||.|||++|+|||||+|.|++.|++..|++
T Consensus 314 --------------------------------~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~ 361 (423)
T PLN02865 314 --------------------------------VEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVY 361 (423)
T ss_pred --------------------------------HHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCe
Confidence 889999999999999999999999999999999999999999757999
Q ss_pred eEEEccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 149 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 149 GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
||||||||||||+|+|++.+.+++|+++|.+.|++++|++.++++.++.+|+|+|++||+++
T Consensus 362 GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 362 GARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred EEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 99999999999999999999999999999999999999888788999999999999999975
No 3
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=3.2e-37 Score=290.44 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=146.0
Q ss_pred ccCcchhhhhhhc---hHH-------HHHHHccccccCCCC------------------HHHH-HHhhccCCHHHhhhhh
Q 028349 5 LCNGEYFHLILFS---SFV-------ILQLIMILIFFQTVE------------------EEVY-EAHKNELEPTLAKRAE 55 (210)
Q Consensus 5 ~~~~~~~~~~~~~---~~~-------~l~~~~g~~~l~~v~------------------~~~~-~~~~~~l~~~~~~Ra~ 55 (210)
++|+.+.|.+..| +|. ...+.||...+|+++ .+++ ..+++.|++.+++|++
T Consensus 255 V~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ra~ 334 (468)
T PTZ00290 255 LIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGT 334 (468)
T ss_pred EEeCCCcchhccccchhhHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHHHHHHH
Confidence 7899999999877 673 356677876555432 1244 3667788999999999
Q ss_pred hhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhC-CCHHHHHHHHHHHHHHhhhhcCCCChhH
Q 028349 56 HYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKS-GNSQDFGKLISASGLSSIYNYECGSEPL 134 (210)
Q Consensus 56 Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~-gD~~~fG~Lm~eSh~SLr~~yeVS~pel 134 (210)
|||+||.||.+|+++|+. .++|++ +|++.||+||++||.||+++|+|||||+
T Consensus 335 HVitEn~RV~~a~~al~~---------------------------~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~el 387 (468)
T PTZ00290 335 YNIMEQIRTLEFIKLNDP---------------------------ELPLSREERFRKAGEILNAGHQGMRDLMKITTPEL 387 (468)
T ss_pred HHhhHHHHHHHHHHHHHh---------------------------hhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999776544 234544 4599999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 135 IQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 135 D~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
|.||+++.+..|++||||||||||||+|+|++++.++++++++.+.|.++ ||.++.+|+++|++||+++
T Consensus 388 D~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~-------~g~~~~~~~~~~~~Ga~~~ 456 (468)
T PTZ00290 388 DFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKAR-------FGVENDVYPVVAGDGAFVV 456 (468)
T ss_pred HHHHHHHHHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCcEEE
Confidence 99999876557999999999999999999999999999999999999885 5899999999999999874
No 4
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=6.1e-36 Score=274.64 Aligned_cols=165 Identities=27% Similarity=0.369 Sum_probs=153.2
Q ss_pred ccCcchhhhhhhchHHHH-------HHHccccccCCCCHHHHHHhhccCCHHHhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 028349 5 LCNGEYFHLILFSSFVIL-------QLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEI 77 (210)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l-------~~~~g~~~l~~v~~~~~~~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~ 77 (210)
++|+.+.|.+..+.|..- ...+|+..|++++++++.+.++.|++.+++|++|+++||+||.++
T Consensus 209 v~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a---------- 278 (382)
T PRK05101 209 IINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEA---------- 278 (382)
T ss_pred EEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHH----------
Confidence 577889999998999544 378899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCC-eeEEEccCC
Q 028349 78 ILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-FGARFSGAG 156 (210)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga-~GaRmtGgG 156 (210)
++||+++|++.||+||++||.+||++|+|||||+|.|+++|++..|+ +||||||||
T Consensus 279 -----------------------~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG 335 (382)
T PRK05101 279 -----------------------ASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGG 335 (382)
T ss_pred -----------------------HHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCC
Confidence 88999999999999999999999999999999999999999974597 588999999
Q ss_pred ccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceec
Q 028349 157 FRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 209 (210)
Q Consensus 157 fGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v 209 (210)
||||+|+|+|++.+++|+++|.+.|+++ ++.++.+|+++|++||++
T Consensus 336 ~GG~~ial~~~~~~~~~~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 336 FGGCIVALVPEELVEAVRQAVAEQYEAK-------TGLKETFYVCKASQGAGQ 381 (382)
T ss_pred CccEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCeEEEEecCCCccc
Confidence 9999999999999999999999999986 489999999999999986
No 5
>PLN02521 galactokinase
Probab=100.00 E-value=6.7e-34 Score=269.68 Aligned_cols=129 Identities=26% Similarity=0.450 Sum_probs=115.3
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCC-----CHHHHHHHHHHHHHH
Q 028349 48 PTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSG-----NSQDFGKLISASGLS 122 (210)
Q Consensus 48 ~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~g-----D~~~fG~Lm~eSh~S 122 (210)
+.+++||+|||+||.||.+| ++||+++ +++.||+||++||.|
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~---------------------------------~~al~~~~~~~~~~~~lg~lm~~sh~s 405 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAF---------------------------------RDTVSSSLSEEEKLKKLGDLMNESHYS 405 (497)
T ss_pred hHHhhhhhheecHHHHHHHH---------------------------------HHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 48899999999999999999 4555544 399999999999999
Q ss_pred hhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhHhhchh--hhhhcCCCceEEE
Q 028349 123 SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPE--LASQLNADSAVLI 200 (210)
Q Consensus 123 Lr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~--~~~~~~~~~~~~~ 200 (210)
++++|+|||||+|.|+++|++ .|++||||||||||||+|+|++++.++++++.+.+.|++++|. -.+.+++++.+|+
T Consensus 406 lr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 484 (497)
T PLN02521 406 CSVLYECSCPELEELVKVCRD-NGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFA 484 (497)
T ss_pred HhhccCCCcHHHHHHHHHHHh-cCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEE
Confidence 999999999999999999997 7999999999999999999999999999999999999987521 1233689999999
Q ss_pred eecCCceecC
Q 028349 201 CKPGDCARVI 210 (210)
Q Consensus 201 ~~p~~Ga~v~ 210 (210)
|+|++||+++
T Consensus 485 ~~p~~Ga~~~ 494 (497)
T PLN02521 485 SKPSSGAAIL 494 (497)
T ss_pred EecCCCceEe
Confidence 9999999874
No 6
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=2e-33 Score=258.54 Aligned_cols=166 Identities=32% Similarity=0.447 Sum_probs=153.4
Q ss_pred ccCcchhhhhhhchHH-----------HHHHHccccccCCCCHHHHHHhhccC-CHHHhhhhhhhhhhhhHHHHHHHhhh
Q 028349 5 LCNGEYFHLILFSSFV-----------ILQLIMILIFFQTVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGIAFLT 72 (210)
Q Consensus 5 ~~~~~~~~~~~~~~~~-----------~l~~~~g~~~l~~v~~~~~~~~~~~l-~~~~~~Ra~Hv~~E~~Rv~~~~~~l~ 72 (210)
++|+.++|.+..+.|. .|++.++..+||++++++++.+++.+ ++.+++|++|+++|+.||.++
T Consensus 210 v~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~----- 284 (387)
T PRK05322 210 IMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKA----- 284 (387)
T ss_pred EEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-----
Confidence 6889999998877773 36666788899999999999988888 489999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEE
Q 028349 73 WSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARF 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRm 152 (210)
+.||+++|++.||++|++||.+|++.|++|+|++|.|++.|++..|++|+||
T Consensus 285 ----------------------------~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garl 336 (387)
T PRK05322 285 ----------------------------VKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARM 336 (387)
T ss_pred ----------------------------HHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEE
Confidence 8899999999999999999999999999999999999999975579999999
Q ss_pred ccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 153 SGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 153 tGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
||||||||+|+|++.+..++|.+.|.+.|+++ +|.+|.+|+++|++||+++
T Consensus 337 sGaG~GG~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 337 TGAGFGGCAIAIVKKDKVEAFKENVGKAYEEK-------IGYAASFYVAEIGDGAREL 387 (387)
T ss_pred ecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCcccC
Confidence 99999999999999999999999999999985 4999999999999999975
No 7
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=3.3e-32 Score=248.64 Aligned_cols=165 Identities=28% Similarity=0.311 Sum_probs=151.6
Q ss_pred ccCcchhhhhhhchHH-------HHHHHccccccCCCCHHHHHHhhccCCHHHhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 028349 5 LCNGEYFHLILFSSFV-------ILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEI 77 (210)
Q Consensus 5 ~~~~~~~~~~~~~~~~-------~l~~~~g~~~l~~v~~~~~~~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~ 77 (210)
++|+.+.|....++|. .+.+.++.+.+|++.++.+......+++..++|++|+++|+.||.++
T Consensus 191 v~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~---------- 260 (363)
T PRK00555 191 LMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDF---------- 260 (363)
T ss_pred EEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH----------
Confidence 7888899987767764 35667888899999999888887777889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCc
Q 028349 78 ILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGF 157 (210)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGf 157 (210)
++||+++|++.||++|+++|.++|++|+||+|++|.|++.|++ .|++|+|||||||
T Consensus 261 -----------------------~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~-~Ga~GaklsGaG~ 316 (363)
T PRK00555 261 -----------------------AAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVR-AGALGARMTGGGF 316 (363)
T ss_pred -----------------------HHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHh-cCCeEEEECCCCc
Confidence 8899999999999999999999999999999999999999996 7999999999999
Q ss_pred cceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 158 RGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 158 GGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
|||+++|++.+..+++.+.|.+.|+++ ++.+|.+|+++|++||+++
T Consensus 317 Gg~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 317 GGCVIALVPADRAEDVADTVRRAAVTA-------GYPEPAVSRTYAAPGAGEC 362 (363)
T ss_pred cCeEEEEEchhHHHHHHHHHHHHHHHc-------cCCCCcEEEEecCCCcccC
Confidence 999999999999999999999999986 4889999999999999975
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.98 E-value=3.6e-32 Score=249.09 Aligned_cols=166 Identities=23% Similarity=0.332 Sum_probs=146.7
Q ss_pred ccCcchhhhhhhchHHH-------HHHHcccc---ccCCCCHHHHH---HhhccCCHHHhhhhhhhhhhhhHHHHHHHhh
Q 028349 5 LCNGEYFHLILFSSFVI-------LQLIMILI---FFQTVEEEVYE---AHKNELEPTLAKRAEHYFTENRRVAKGIAFL 71 (210)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-------l~~~~g~~---~l~~v~~~~~~---~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~~l 71 (210)
++++.+.|...-+.|.. ..+.++.. .+|++.++++. +.+..+++..++|++|+++||.||.++
T Consensus 208 v~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~---- 283 (386)
T TIGR00131 208 IANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKA---- 283 (386)
T ss_pred EEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHH----
Confidence 56778888876666642 45566655 89999999877 557778899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEE
Q 028349 72 TWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGAR 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaR 151 (210)
++||+++|++.||++|++||.+|++.|++|||++|.+++.|....|++|||
T Consensus 284 -----------------------------~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGak 334 (386)
T TIGR00131 284 -----------------------------VKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSR 334 (386)
T ss_pred -----------------------------HHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 889999999999999999999999989999999999998875458999999
Q ss_pred EccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 152 FSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 152 mtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
|||||||||+|+|++++.++++.++|.+.|+++ +|.++.+|+++|++|++.+
T Consensus 335 ltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 386 (386)
T TIGR00131 335 MTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK-------TGLELTFYVIVSKPGAGSC 386 (386)
T ss_pred EecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCcEEEEEECCCcCCC
Confidence 999999999999999999999999999999775 4899999999999999863
No 9
>PRK03817 galactokinase; Provisional
Probab=99.95 E-value=2.1e-27 Score=214.85 Aligned_cols=160 Identities=30% Similarity=0.369 Sum_probs=140.1
Q ss_pred cCcchhhhhhhchHH-------HHHHHccccccCCCCHHHHHHhhccCCHHHhhhhhhhhhhhhHHHHHHHhhhhhHHHH
Q 028349 6 CNGEYFHLILFSSFV-------ILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEII 78 (210)
Q Consensus 6 ~~~~~~~~~~~~~~~-------~l~~~~g~~~l~~v~~~~~~~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~ 78 (210)
+++.+.|....+.|. ..++.++..++++++.+++. .+++.+++|+.|+++|+.||.++
T Consensus 184 ~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~l~~~~~~~~~~~v~e~~r~~~~----------- 248 (351)
T PRK03817 184 FDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLS----KLPPLLRKRAGYVLRENERVLKV----------- 248 (351)
T ss_pred EeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHH----hCCHHHHHHHHHHHHHHHHHHHH-----------
Confidence 444555655544442 45677888888888866543 57888999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCcc
Q 028349 79 LEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 158 (210)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfG 158 (210)
+.||+++|++.||++|++||.++++.|++|+|++|.|++.|++ .|++|+||||||||
T Consensus 249 ----------------------~~al~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGaG~G 305 (351)
T PRK03817 249 ----------------------RDALKEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGAGFG 305 (351)
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 7899999999999999999999999999999999999999996 79999999999999
Q ss_pred ceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 159 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 159 GcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
||+++|++++..+++++.+.+.|.+. ++.++.+|++.|++|++++
T Consensus 306 g~vlal~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 306 GSAIALVDKGKFESIGEELLEEYKKR-------FGIDPKYFVVESSDGVRKI 350 (351)
T ss_pred eEEEEEEchHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCceeC
Confidence 99999999999999999999999875 4788999999999999985
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=5.4e-25 Score=206.02 Aligned_cols=134 Identities=32% Similarity=0.491 Sum_probs=115.4
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhc
Q 028349 48 PTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNY 127 (210)
Q Consensus 48 ~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~y 127 (210)
.++++||+||++|+.||.++.+++.... ..+ .|.++.||+|||+||.|++.+|
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~-------------------------~~~--d~~~~~~g~LmneS~~Sc~~~y 405 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAP-------------------------GRA--DGFLADFGRLMNESHRSCDVLY 405 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------------------cch--hhhHHHHHHHhhhhhHHHHHHH
Confidence 5589999999999999999955444321 111 2668999999999999999999
Q ss_pred CCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhH-hhchhhhhhcCCCceEEEeecCCc
Q 028349 128 ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF-ELQPELASQLNADSAVLICKPGDC 206 (210)
Q Consensus 128 eVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~-~~~p~~~~~~~~~~~~~~~~p~~G 206 (210)
++||||+|+|+++|+. +|.+|+|+||||||||+++++|.+.++.+.+.+.+.|+ +++|.++++ .+.+.++.++|+.|
T Consensus 406 Ecscpel~qL~kiala-~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~-~~k~~~~~skp~~g 483 (489)
T KOG0631|consen 406 ECSCPELDQLCKIALA-NGGVGARLTGAGWGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQD-ELKKALIVSKPAAG 483 (489)
T ss_pred hcCCHhHHHHHHHHHh-cCCccceeeccccccceeeeccccchHHHHHhhhhhhhccccchhhhc-hhhceEEEecCchh
Confidence 9999999999999996 78899999999999999999999999999999887777 456887776 47889999999999
Q ss_pred eecC
Q 028349 207 ARVI 210 (210)
Q Consensus 207 a~v~ 210 (210)
+.++
T Consensus 484 ~~l~ 487 (489)
T KOG0631|consen 484 VLLL 487 (489)
T ss_pred hhhc
Confidence 8764
No 11
>PTZ00298 mevalonate kinase; Provisional
Probab=99.59 E-value=1.9e-14 Score=129.69 Aligned_cols=82 Identities=27% Similarity=0.327 Sum_probs=74.0
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~ 179 (210)
..+|.++|++.+|++|+++|..++. +++++|++|.+++.+++ .|++|+||||+|+|||+++|++. +.++++.+.+.+
T Consensus 231 ~~al~~~d~~~lg~~m~~~~~~l~~-~~v~~p~l~~l~~~~~~-~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~ 308 (328)
T PTZ00298 231 KEALQKGNLFRVGELMNANHDLCQK-LTVSCRELDSIVQTCRT-YGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRA 308 (328)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHh-CCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHH
Confidence 6689999999999999999988875 78999999999999986 89999999999999999999986 678889999988
Q ss_pred HhHhh
Q 028349 180 EYFEL 184 (210)
Q Consensus 180 ~y~~~ 184 (210)
.|.+.
T Consensus 309 ~~~~~ 313 (328)
T PTZ00298 309 RCPEA 313 (328)
T ss_pred Hhhhc
Confidence 87753
No 12
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.57 E-value=8.6e-15 Score=105.90 Aligned_cols=81 Identities=27% Similarity=0.382 Sum_probs=72.1
Q ss_pred HHHhhCCCHHHHHHHHHHHHHH-hhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEe-ccccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLS-SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~S-Lr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv-~~~~~~~~~~~l~ 178 (210)
++||.++|++.|+++|+++|.+ ......+.+|+++.+++.+.+ .|++|++|+|+|||||+++|+ +.+.++++.++++
T Consensus 2 ~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 2 IKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4689999999999999999975 233678899999999999975 899999999999999999999 6689999999998
Q ss_pred HHhH
Q 028349 179 SEYF 182 (210)
Q Consensus 179 ~~y~ 182 (210)
+.|.
T Consensus 81 ~~~~ 84 (85)
T PF08544_consen 81 EHYK 84 (85)
T ss_dssp HHTH
T ss_pred HhCC
Confidence 8775
No 13
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.55 E-value=2.4e-14 Score=129.33 Aligned_cols=65 Identities=26% Similarity=0.421 Sum_probs=60.3
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 167 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~ 167 (210)
..+++++|.+.||++|+.+|.-| +..+||+|++|.|++.+++ .|+.|||+||||+|||+|+|+++
T Consensus 217 ~~al~~~d~e~lgelm~~nq~LL-~~LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAGgGGc~IaL~~~ 281 (307)
T COG1577 217 EAALQTGDFEELGELMNINQGLL-KALGVSTPELDELVEAARS-LGALGAKLTGAGGGGCIIALAKN 281 (307)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHh-cCccccccccCCCCceEEEEecc
Confidence 67899999999999999999756 4579999999999999996 89999999999999999999986
No 14
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.54 E-value=1.8e-14 Score=125.15 Aligned_cols=62 Identities=29% Similarity=0.453 Sum_probs=57.9
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEE
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 164 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaL 164 (210)
.+||+++|++.||++|+++|..+++ +++|+|++|.|++.+++ .|++|+||||||+|||+|+|
T Consensus 212 ~~al~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 212 KAALQDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARK-AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-CCCceeeeccCCCCceEEeC
Confidence 6889999999999999999987764 79999999999999986 79999999999999999986
No 15
>PRK03926 mevalonate kinase; Provisional
Probab=99.52 E-value=2e-13 Score=120.71 Aligned_cols=93 Identities=24% Similarity=0.353 Sum_probs=79.2
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 180 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~ 180 (210)
..++.++|++.||++|+++|. +.+.+++++|++|.+++.+++ .|++|+||||+|+|||+++|++++.++++.+.+.+.
T Consensus 205 ~~al~~~d~~~l~~~~~~~~~-~~~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~ 282 (302)
T PRK03926 205 EELILSGDYVSLGELMNINQG-LLDALGVSTKELSELIYAART-AGALGAKITGAGGGGCMVALAAPEKQSEVATAIKIA 282 (302)
T ss_pred HHHHhcCCHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCCCEEEEEeccccHHHHHHHHHhc
Confidence 467889999999999999995 556789999999999999986 799999999999999999999988888888877653
Q ss_pred hHhhchhhhhhcCCCceEEEeec-CCceec
Q 028349 181 YFELQPELASQLNADSAVLICKP-GDCARV 209 (210)
Q Consensus 181 y~~~~p~~~~~~~~~~~~~~~~p-~~Ga~v 209 (210)
+ ..++++++ .+|+.+
T Consensus 283 ~--------------~~~~~~~~~~~G~~i 298 (302)
T PRK03926 283 G--------------GKPIITKITDEGLRI 298 (302)
T ss_pred C--------------CeEEEEecCCCeeEE
Confidence 2 24678887 458765
No 16
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.39 E-value=1.5e-12 Score=119.08 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=65.9
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhh-----cCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYN-----YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 174 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~-----yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~ 174 (210)
.+||+++|++.||++|+++|..|+.. .+||+|++|.|++.|++ .|+ |||+||||+|||+|+|++++ .++.+.
T Consensus 262 ~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~ 339 (358)
T TIGR01220 262 ITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIAILDAEADITHVR 339 (358)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEEEeCCchhHHHHH
Confidence 77899999999999999999988763 48999999999999986 787 99999999999999999864 444455
Q ss_pred HHHHH
Q 028349 175 SYVRS 179 (210)
Q Consensus 175 ~~l~~ 179 (210)
+++++
T Consensus 340 ~~~~~ 344 (358)
T TIGR01220 340 QRWET 344 (358)
T ss_pred HHHHH
Confidence 55544
No 17
>PLN02677 mevalonate kinase
Probab=99.38 E-value=3.1e-12 Score=118.79 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhHh
Q 028349 107 GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 183 (210)
Q Consensus 107 gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~ 183 (210)
+|++.+|++|+.+|.-|+ .++||+|+||.++++|.+ .| +|||+||||+|||+|+|++++..++-++.+.+...+
T Consensus 291 ~~~~~Lg~lm~~N~~LL~-~LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~ 364 (387)
T PLN02677 291 EKEEKLKELMEMNQGLLQ-CMGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELES 364 (387)
T ss_pred chHHHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEcccccchhHHHHHHHHHHH
Confidence 679999999999998775 579999999999999986 55 799999999999999999864333334444444443
No 18
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.38 E-value=4e-12 Score=128.88 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=66.8
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEec-cccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD-ADRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~-yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~-~~~~~~~~~~l~ 178 (210)
.+||++||+++||++|+++|..++.. .+||+|++|.|++.|+ .|++|+|+||||+|||++++++ ++.++++.+.++
T Consensus 872 ~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~--~gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~ 949 (974)
T PRK13412 872 YEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIK--DYTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILT 949 (974)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH--cCCcEEEecccCcccEEEEEECChhhHHHHHHHHH
Confidence 78999999999999999999877642 4999999999999996 4799999999999999999995 456667777765
Q ss_pred H
Q 028349 179 S 179 (210)
Q Consensus 179 ~ 179 (210)
+
T Consensus 950 ~ 950 (974)
T PRK13412 950 E 950 (974)
T ss_pred h
Confidence 5
No 19
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.34 E-value=1e-11 Score=111.52 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=72.8
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~-yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~ 179 (210)
.+||-++|+.+||++|+.+|+..+.. -.+|+|.+|.+++.|++ +|++|+|++|||.||.++.+|++.+..+++++|..
T Consensus 234 ~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~ 312 (333)
T COG2605 234 KDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAGGGGFLLFFCDPSKRNELARALEK 312 (333)
T ss_pred HHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccCCccEEEEEeCccchHHHHHHHHH
Confidence 67888999999999999999988754 47999999999999997 89999999999999999999999999999998876
Q ss_pred H
Q 028349 180 E 180 (210)
Q Consensus 180 ~ 180 (210)
.
T Consensus 313 ~ 313 (333)
T COG2605 313 E 313 (333)
T ss_pred h
Confidence 3
No 20
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=98.87 E-value=3.1e-08 Score=91.11 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhHh
Q 028349 111 DFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 183 (210)
Q Consensus 111 ~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~ 183 (210)
.+.+||..+|.-| +..|||+|.+|.++.++++ .| +.+||||||+|||+++|++++...+.++.+.+....
T Consensus 293 ~L~eLi~iNq~LL-~alGVsH~~le~v~~~t~k-~g-i~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s 362 (397)
T KOG1511|consen 293 KLEELIRINQDLL-DALGVSHPSLELVCTTTRK-LG-IHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELES 362 (397)
T ss_pred HHHHHHHHhHHHH-HHhCCCcHHHHHHHHHHHH-hC-cceecccCCCCceEEEEECCCCchHHHHHHHHHHHh
Confidence 5999999999755 6789999999999999986 77 678999999999999999999877777777776664
No 21
>PRK01212 homoserine kinase; Provisional
Probab=98.87 E-value=1.7e-08 Score=89.47 Aligned_cols=95 Identities=22% Similarity=0.280 Sum_probs=74.2
Q ss_pred HHHhhCCCHHHHHHHHHHH-HHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISAS-GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eS-h~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~ 179 (210)
..+|.++|++.+++.|+.. |...+ .-..|+++.+.+.+++ .|++|++|+|+| +|+++|++.+..+++.+.+.+
T Consensus 205 ~~al~~~d~~~~~~~~~~~~~~~~~---~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~ 278 (301)
T PRK01212 205 VAALYTGDYELAGRAMKDVLHEPYR---AKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALCDKEDAEKVADALQK 278 (301)
T ss_pred HHHHhhCCHHHHHHHhchhheHHhH---HhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEeccccHHHHHHHHHH
Confidence 5689999999999998432 22222 2246999999999986 799999999986 899999988766888888888
Q ss_pred HhHhhchhhhhhcCCCceEEEeecCC-ceecC
Q 028349 180 EYFELQPELASQLNADSAVLICKPGD-CARVI 210 (210)
Q Consensus 180 ~y~~~~p~~~~~~~~~~~~~~~~p~~-Ga~v~ 210 (210)
.| . . +.+..+++++|+. |+++.
T Consensus 279 ~~-~-------~-~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 279 AF-L-------Q-GIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred hh-c-------c-CCCeEEEEeccCCCceEeC
Confidence 76 2 1 5667899999887 88763
No 22
>PLN02451 homoserine kinase
Probab=98.79 E-value=6.4e-08 Score=89.46 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=79.2
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~ 179 (210)
+.+|.++|++.+++.|+..|. +......+.|+++.+++.+++ .|++|++|||+|- |+++|++. +.++++.+++.+
T Consensus 265 ~~al~~~d~~~l~~~m~nD~~-~e~~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSGp--tvfal~~~~~~a~~i~~~l~~ 340 (370)
T PLN02451 265 VAAILQGDAVLLGEALSSDKI-VEPTRAPLIPGMEAVKKAALE-AGAYGCTISGAGP--TAVAVIDDEEKGEEVGERMVE 340 (370)
T ss_pred HHHHHcCCHHHHHHHHHHHHH-hHHHHhhhCccHHHHHHHHHH-CCCeEEEEEccch--heEEEEcCHHHHHHHHHHHHH
Confidence 568999999999999987642 223335789999999999986 8999999999886 78888875 478889999988
Q ss_pred HhHhhchhhhhhcCCCceEEEeecCC-ceec
Q 028349 180 EYFELQPELASQLNADSAVLICKPGD-CARV 209 (210)
Q Consensus 180 ~y~~~~p~~~~~~~~~~~~~~~~p~~-Ga~v 209 (210)
.|.+.. +....++++++.. |+++
T Consensus 341 ~~~~~~-------~~~~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 341 AFRKAG-------NLKATASVKKLDRVGARL 364 (370)
T ss_pred HHHHhc-------CCCceEEEeccCCCCeEE
Confidence 886532 4678899999886 8876
No 23
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.31 E-value=1.5e-06 Score=76.63 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=58.4
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCC-ChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS-~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~ 178 (210)
..++.++|++.++++|+. .+ ..+.++ .|+++.+++.+++ .|++|++|+|+| +|+++|++. +.++++.+.++
T Consensus 198 ~~~l~~~d~~~~~~~~~n---~l-~~~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~ 270 (286)
T PRK00128 198 IEAIEEGDYQGICANMGN---VL-ENVTLKKYPEIAKIKERMLK-FGADGALMSGSG--PTVFGLFDDESRAQRIYNGLK 270 (286)
T ss_pred HHHHhcCCHHHHHHhccC---cH-HHHHHhhChHHHHHHHHHHh-cCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhH
Confidence 567889999999999852 33 345564 8999999999986 899999999998 999999976 45667777776
Q ss_pred HH
Q 028349 179 SE 180 (210)
Q Consensus 179 ~~ 180 (210)
+.
T Consensus 271 ~~ 272 (286)
T PRK00128 271 GF 272 (286)
T ss_pred hh
Confidence 53
No 24
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=98.26 E-value=7.8e-06 Score=72.94 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=67.1
Q ss_pred HHHhhCCCHHHHHHHHHHH--HHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHH-HHHHH
Q 028349 101 LEAWKSGNSQDFGKLISAS--GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEE-AASYV 177 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eS--h~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~-~~~~l 177 (210)
+.+|.+++. .+++++.+. |+..+ ....|+++.+++.+++ .|++|++|+|+| +++++|++++...+ +.+.+
T Consensus 205 ~~al~~~~~-~l~~~~~~d~l~e~~~---~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~ 277 (302)
T TIGR00191 205 VHAIYQKKP-DLGAIMMKDRIHQPYR---ESLIPNLFKIKQAALE-KGAYGITISGSG--PTILAMADEEFAEQKEQDLL 277 (302)
T ss_pred HHHHHcCCH-HHHHHHcccccchhhH---hhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhheEEecchhhHHHHHHHH
Confidence 457878865 467777655 33222 3568999999999986 899999999998 88999998765544 33444
Q ss_pred HHHhHhhchhhhhhcCCCceEEEeecCC-ceec
Q 028349 178 RSEYFELQPELASQLNADSAVLICKPGD-CARV 209 (210)
Q Consensus 178 ~~~y~~~~p~~~~~~~~~~~~~~~~p~~-Ga~v 209 (210)
+.. +. .+.+..+++++|.. |+++
T Consensus 278 ~~~-~~--------~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 278 EVL-HK--------QGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred HHH-Hh--------cCCCeEEEEcccCCCCeEe
Confidence 443 32 25677899999877 8875
No 25
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=98.07 E-value=1.4e-05 Score=70.43 Aligned_cols=67 Identities=21% Similarity=0.170 Sum_probs=51.3
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~ 179 (210)
.++++.+|+. ++|+.+|..+....+++++ ++..|++ .|++|++|||+ |||+++|+++. +++.+++++
T Consensus 187 ~~~~~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~-~Galga~lSGa--G~sv~aL~~~~--~~v~~~~~~ 253 (261)
T TIGR01920 187 FNLALRGEYL---KAMVLNGVAYATALGYPLE----PASKALE-AGAAAAGLSGK--GPSYFALTEDP--EEAAEALME 253 (261)
T ss_pred HHHHhhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHH-cCCcEEeecCC--CCeEEEEeCCH--HHHHHHHHh
Confidence 4567788876 8899999654466788775 4466775 89999999996 89999998755 566666665
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.03 E-value=4.5e-05 Score=67.86 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=64.9
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCC-ChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS-~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~ 178 (210)
..++.++|++.+|+.|... + ..+.++ +|+++.+++.+++ .|++|++|||+|-+ ++++++. +.++++.+.+.
T Consensus 202 ~~al~~~d~~~l~~~~~n~---l-e~~~~~~~p~l~~l~~~~~~-~Galga~lSGsG~t--v~~l~~~~~~~~~~~~~l~ 274 (300)
T PRK03188 202 LAALRAGDPAQLAPLLGND---L-QAAALSLRPSLRRTLRAGEE-AGALAGIVSGSGPT--CAFLCADADSAVDVAAALS 274 (300)
T ss_pred HHHHHcCCHHHHHHHhhCc---C-HHHHHHhCchHHHHHHHHHH-CCCCEEEEEccccc--eEEEeCCHHHHHHHHHHHH
Confidence 5789999999999998632 2 224444 9999999999986 89999999998865 6777775 34555555554
Q ss_pred HHhHhhchhhhhhcCCCceEEEee-cCCceecC
Q 028349 179 SEYFELQPELASQLNADSAVLICK-PGDCARVI 210 (210)
Q Consensus 179 ~~y~~~~p~~~~~~~~~~~~~~~~-p~~Ga~v~ 210 (210)
+. |..-.+++++ ...|++|+
T Consensus 275 ~~------------g~~~~~~~~~~~~~~~~~~ 295 (300)
T PRK03188 275 GA------------GVCRTVRVATGPVPGARVV 295 (300)
T ss_pred hc------------CcceeEEEeeccccceEec
Confidence 41 3444677744 56677664
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.99 E-value=2.9e-05 Score=69.60 Aligned_cols=93 Identities=23% Similarity=0.352 Sum_probs=69.1
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH-hcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ-RAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~-~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~ 178 (210)
..+|.++|++.++..| |+.++....-..|++..+.+.++ + .|++|+.|||+| .|+++|++.. .++.+.+.+.
T Consensus 215 ~~al~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~ 288 (312)
T PRK02534 215 LQAISAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG--PTCFALFESQEQAEQALEQVR 288 (312)
T ss_pred HHhhhccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHH
Confidence 5678899999998876 55555544447889999888876 5 799999999877 8999999863 6777777776
Q ss_pred HHhHhhchhhhhhcCCCceEEEeecCC-ceec
Q 028349 179 SEYFELQPELASQLNADSAVLICKPGD-CARV 209 (210)
Q Consensus 179 ~~y~~~~p~~~~~~~~~~~~~~~~p~~-Ga~v 209 (210)
+.+.. ..-.++++++.. |+.|
T Consensus 289 ~~~~~----------~~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 289 EAFAD----------PGLDAWVCQFISHGIQL 310 (312)
T ss_pred HHhcc----------CceEEEEEEecCCCcee
Confidence 65432 122688887766 7765
No 28
>PTZ00299 homoserine kinase; Provisional
Probab=97.67 E-value=0.00026 Score=64.97 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=72.6
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCC--CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-----------
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYEC--GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA----------- 167 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeV--S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~----------- 167 (210)
+.+|.++|++.+..+...-|+ -|.. -.|+++.+.+.+.+ .|++|+-|+|+| =++++|++.
T Consensus 213 v~al~~~d~~ll~~~~D~lhe----p~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSG--PTv~al~~~~~~~~~~~~~~ 285 (336)
T PTZ00299 213 VLALSTGDLRMLKSCSDKLHE----QQRSDALFPHFRPCVKAARE-AGAHYAFLSGAG--PSVCALVGGRHGDPLTQPRE 285 (336)
T ss_pred HHHHHhCCHHHHHhchhcccC----cccccccCccHHHHHHHHHH-CCCeEEEEEchh--hhheEEeccccccccccccc
Confidence 578999999988653222333 3432 37899999999986 899999999987 568999872
Q ss_pred -ccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCC-ceec
Q 028349 168 -DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 209 (210)
Q Consensus 168 -~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~-Ga~v 209 (210)
+..+++.++|.+.|.+ .|++..++++.+.. |+++
T Consensus 286 ~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~G~~~ 321 (336)
T PTZ00299 286 ERKAESVAEAMIKAAEA--------VGVAGRVIITQPSDQGVHL 321 (336)
T ss_pred hhHHHHHHHHHHHHHHH--------cCCceEEEEccCCCCCcEE
Confidence 3467888898888865 37889999999987 8876
No 29
>PRK01123 shikimate kinase; Provisional
Probab=97.60 E-value=0.00038 Score=61.71 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHh
Q 028349 102 EAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 181 (210)
Q Consensus 102 ~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y 181 (210)
++++.+|+ +.+|+.++.-.+...+++++ ++..+++ .|++|++++|+ |+|+++|++.+..+++.+.+.+.
T Consensus 198 ~~~~~~~l---~~~~~~~~l~~~~~l~~~~~----~i~~a~~-~Ga~ga~lSGa--Gptv~al~~~~~~~~v~~~l~~~- 266 (282)
T PRK01123 198 ELALDGEY---FKAMTLNGLLYSSALGFPTE----PALEALE-AGAVGVGLSGT--GPSYVAIVDEEDPEEVKEAWEKY- 266 (282)
T ss_pred HHHhhccH---HHHHHhCCchhhhhhCCChH----HHHHHHH-CCCeEEEEecC--CCeEEEEeCCCCHHHHHHHHHhC-
Confidence 34556666 47777765433344566632 3545664 89999999974 79999999988888888887773
Q ss_pred HhhchhhhhhcCCCceEEEeecC-Cceec
Q 028349 182 FELQPELASQLNADSAVLICKPG-DCARV 209 (210)
Q Consensus 182 ~~~~p~~~~~~~~~~~~~~~~p~-~Ga~v 209 (210)
..+++++|. .|+.+
T Consensus 267 --------------~~~~~~~~~~~G~~v 281 (282)
T PRK01123 267 --------------GKVIVTKINNEGARI 281 (282)
T ss_pred --------------CEEEEeeecCCCcee
Confidence 246677764 56654
No 30
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.45 E-value=0.00046 Score=61.94 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHhhCCCHHHHHHH-HHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKL-ISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~L-m~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~ 178 (210)
+.+|.++|++.+... +|.-+. .+. --.|+++.+.+.+.+ .|++|++|||+ |.|++++++. +.++++.+.++
T Consensus 212 ~~al~~~~~~~l~~~l~ndle~-~~~---~l~P~~~~i~~~~~~-~Ga~~~~mSGS--Gptvf~l~~~~~~a~~~~~~l~ 284 (297)
T PRK14613 212 ISSLKVGDWVSLQGRLENDFEP-VAF---QLHPELGVLKDKFLE-FGSSYCSLTGS--GSSMYGLVQGLEIQEELLPRLR 284 (297)
T ss_pred HHHHHcCCHHHHHHHhcccchH-HHH---HhCcHHHHHHHHHHH-cCCCEEEEEcc--ccceEEEeCCHHHHHHHHHHHH
Confidence 567888999877544 344322 221 128999999999885 89999999999 6999999987 67778888887
Q ss_pred HHhHh
Q 028349 179 SEYFE 183 (210)
Q Consensus 179 ~~y~~ 183 (210)
+.|.+
T Consensus 285 ~~~~~ 289 (297)
T PRK14613 285 QEFSN 289 (297)
T ss_pred Hhhcc
Confidence 76654
No 31
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=97.35 E-value=0.00065 Score=60.73 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=40.2
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHHHHhH
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYF 182 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~~~y~ 182 (210)
++|+++.+.+.+++ .|++|++|||+ |+|+++|++.+ .+..+.+.+++.+.
T Consensus 226 ~~p~l~~i~~~l~~-~Ga~~a~mSGS--G~tvf~l~~~~~~a~~~~~~~~~~~~ 276 (293)
T TIGR00154 226 RHTEVAQALNWLLE-YGLAPERLSGS--GACVFALFDMESEAEQVLEQAPEWLN 276 (293)
T ss_pred cCHHHHHHHHHHHh-CCCCeEEEecc--ccceEEEeCCHHHHHHHHHHhHHHhh
Confidence 78999999999986 89999999999 59999999864 46666666654443
No 32
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.34 E-value=0.00032 Score=62.16 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=39.0
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecccc-HHHHHHHHHH
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 179 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~-~~~~~~~l~~ 179 (210)
..|+++.+++.+++ .|++|++|||+| ||+++|++.+. ++++.+.+.+
T Consensus 221 ~~p~l~~i~~~~~~-~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 221 RFPVIGEIKEELLA-AGARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred cChHHHHHHHHHHh-CCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 37999999999986 899999999997 99999998754 5556655555
No 33
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=97.26 E-value=0.0016 Score=62.29 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHhhhh-----cCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhH
Q 028349 108 NSQDFGKLISASGLSSIYN-----YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 182 (210)
Q Consensus 108 D~~~fG~Lm~eSh~SLr~~-----yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~ 182 (210)
|+..+.+.|.++-..||+. -.+-+|++-.|++.+.+..|++||++.|||+|-|+++|+..+. ++++.+.+...
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 7888888888888777653 2456789999999998888999999999999999999987653 13344444443
No 34
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.90 E-value=0.0012 Score=58.34 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=42.5
Q ss_pred hhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHHHHh
Q 028349 125 YNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEY 181 (210)
Q Consensus 125 ~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~~~y 181 (210)
.......|+++.+.+.+++ .|++|++|||+| +|+++|++.+ .++.+.+.+.+.|
T Consensus 211 ~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~~~l~~~~ 265 (276)
T PRK14612 211 GPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLAEDAAQAQRAAAALRARH 265 (276)
T ss_pred HHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEeCCHHHHHHHHHHhHhhC
Confidence 3345688999999999985 899999999988 6999999764 4666666666543
No 35
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=96.87 E-value=0.021 Score=52.01 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=76.1
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHh---hhhc--CCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSS---IYNY--ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAAS 175 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SL---r~~y--eVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~ 175 (210)
..|+..+|++.||+-|++=|.-. .+.. +.-|+.+..+++.+.+ + ++||=++ -||=++.++++.........
T Consensus 208 mPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~-~-a~~agqS--SwGPtvY~i~d~~~~~~~~~ 283 (312)
T COG1907 208 MPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE-A-AYGAGQS--SWGPTVYGIVDSREAGSVVR 283 (312)
T ss_pred hHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH-h-ccccccc--ccCCEEEEeccccccchHHH
Confidence 56788999999999999998766 3333 4567888999999986 4 6776564 49999999999988887777
Q ss_pred HHHHHhHhhchhhhhhcCCCceEEEeecCC-ceec
Q 028349 176 YVRSEYFELQPELASQLNADSAVLICKPGD-CARV 209 (210)
Q Consensus 176 ~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~-Ga~v 209 (210)
.+.+.+.+. +....+++|+|-+ ||.+
T Consensus 284 ~~~~~~~~~--------g~~gev~vT~~rN~Ga~i 310 (312)
T COG1907 284 KLIDILLEE--------GIGGEVFVTKARNRGAEI 310 (312)
T ss_pred HHHHHHHhc--------CCceEEEEeccCCCCcee
Confidence 777766653 7888999999864 4443
No 36
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=96.81 E-value=0.016 Score=52.73 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=68.8
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcC--CCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYE--CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~ye--VS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~ 178 (210)
+.+|.++|++.|++.|+.-+..-.+..+ .-.|.+..+++.+.. ++|+-|+| +|=+++++++.+ .+++.+.+.
T Consensus 226 ~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~---a~g~~iSG--sGPTv~al~~~~-~~~~~~~~~ 299 (324)
T TIGR00144 226 MPAVVEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS---APGAGMSS--FGPTVYAVTDEK-PGNIAGAVA 299 (324)
T ss_pred HHHHHhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh---ccCceecC--CCCeEEEEecCc-hHHHHHHHH
Confidence 6789999999999999864432212111 246777777776653 47888876 557789998764 777888888
Q ss_pred HHhHhhchhhhhhcCCCceEEEeecCC-ceecC
Q 028349 179 SEYFELQPELASQLNADSAVLICKPGD-CARVI 210 (210)
Q Consensus 179 ~~y~~~~p~~~~~~~~~~~~~~~~p~~-Ga~v~ 210 (210)
+.|.. .+....++++++.. |++|.
T Consensus 300 ~~~~~--------~~~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 300 DIFGP--------YGVYGRIIVTKARNRGAFII 324 (324)
T ss_pred HHhhh--------CCCceEEEEEccCCCCCEeC
Confidence 86654 26778899999985 98873
No 37
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.73 E-value=0.0023 Score=57.37 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHH
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 179 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~ 179 (210)
..|+++.+.+.+.+ .|++|++|||+| +|+++|++. +.++++.+.+++
T Consensus 239 l~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 239 AHPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred hChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhh
Confidence 78999999999986 899999999999 999999875 455666666655
No 38
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.32 E-value=0.0027 Score=56.26 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHH
Q 028349 120 GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 173 (210)
Q Consensus 120 h~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~ 173 (210)
|+.++.......|+++.+.+.+++ .|++|++|||+| +|++++.+. ++.++|
T Consensus 208 ~Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~~~~~~~~ 259 (269)
T PRK14609 208 VNDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKKPPNLDEF 259 (269)
T ss_pred CCChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECChHHcCcc
Confidence 344444455678999999999885 899999999995 999999875 344443
No 39
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.28 E-value=0.011 Score=52.39 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHHHhHh
Q 028349 107 GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFE 183 (210)
Q Consensus 107 gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~~y~~ 183 (210)
+|++.++.++|.-+ ..+. --.|+++.+.+.+++ .|++|+.|+|+|= ++++|+++ +.++++.+.+++.|..
T Consensus 206 ~~~~l~~~~~nD~e-~~~~---~l~p~l~~v~~~~~~-~Galg~~lSGSGp--tv~al~~~~~~a~~i~~~l~~~~~~ 276 (287)
T PRK14616 206 GDTSVLPAFENDFE-SAVF---DHYPAVRKVKDDLLE-AGSFFASLSGSGS--AVFGLFENEADAEAAAEMMRARYRT 276 (287)
T ss_pred CHHHHHHHhcCccH-HHHH---HhChHHHHHHHHHHh-CCCCeEEEecccc--cceEEeCCHHHHHHHHHHhHHhCcc
Confidence 45555555554221 1121 236899999999986 8999999999985 89999987 5778888888877664
No 40
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.058 Score=49.14 Aligned_cols=95 Identities=23% Similarity=0.301 Sum_probs=62.7
Q ss_pred HHHhhCCCHHHHHHHHHHH-HHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISAS-GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eS-h~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~ 179 (210)
+.||.++|.+.+...|..- |+-.|.. =-|..+.+.+.|.+ .|++|+-++|+| =++++++++...+...+.+++
T Consensus 201 v~al~~~~~~l~~~~~~D~ihepyR~~---L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~~~~~~e~~~~~~~~ 274 (299)
T COG0083 201 VAALLEGDPELLRAMMKDVIHEPYRAK---LVPGYAEVREAALE-AGALGATLSGAG--PTVFALADESDAEKAAALLEE 274 (299)
T ss_pred HHHHHcCCHHHHHHHhccccchhhhhh---hCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEeccchhhHHHHHHHH
Confidence 6789999955444444433 3333332 34788888899986 899999999987 569999988734444444444
Q ss_pred HhHhhchhhhhhcCCCc-eEEEeecCCceecC
Q 028349 180 EYFELQPELASQLNADS-AVLICKPGDCARVI 210 (210)
Q Consensus 180 ~y~~~~p~~~~~~~~~~-~~~~~~p~~Ga~v~ 210 (210)
.|.+ +.+. ..+...+++|++++
T Consensus 275 ~~~~---------~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 275 LYEQ---------GIKGRVHILALDSDGARVV 297 (299)
T ss_pred HHHh---------CCcceEEEEeecCCcceEe
Confidence 4443 3444 44556688887764
No 41
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.65 E-value=0.021 Score=50.94 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHhcC-CCeeEEEccCCccceeEEEeccc-cHHHHHHHHHH
Q 028349 130 GSEPLIQLNEILQRAP-GVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 179 (210)
Q Consensus 130 S~pelD~Lve~A~~~~-Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~~ 179 (210)
..|+++.+.+.+.+ . |++|++|||+| .++++|++.+ .++++.+.+++
T Consensus 229 l~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~ 277 (290)
T PRK14608 229 LAPVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAA 277 (290)
T ss_pred cCcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHh
Confidence 58999999999986 7 99999999998 8899998763 46666666655
No 42
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=93.30 E-value=0.19 Score=44.72 Aligned_cols=48 Identities=29% Similarity=0.479 Sum_probs=36.9
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHH
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 179 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~ 179 (210)
-.|+++.+.+...+..|+++++|||+|= |++++++. +.++++.+.+.+
T Consensus 221 l~P~l~~~~~~l~~~~ga~~a~mSGSGs--Tvf~l~~~~~~a~~~~~~l~~ 269 (283)
T PRK14610 221 LVPEIEEILFVLESLEGCILSRMSGSGA--TCFALFEEEEAAEAAARYLKM 269 (283)
T ss_pred hChHHHHHHHHHHhcCCCceEEEeCccc--ceeEEeCCHHHHHHHHHHhhh
Confidence 3899999999775435889999999985 89999876 456666666654
No 43
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=90.48 E-value=2 Score=42.51 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=51.8
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhh-hhcCCCChhHHHHHHHHHhcCCCee--EEEccCCccceeEEEeccccHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSI-YNYECGSEPLIQLNEILQRAPGVFG--ARFSGAGFRGCCLALVDADRAEEAAS 175 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr-~~yeVS~pelD~Lve~A~~~~Ga~G--aRmtGgGfGGcvIaLv~~~~~~~~~~ 175 (210)
++-.++|.++.+|+++...|.... ..-++-.+..-.|.+... +-..| +-..|||+||.+.-+.+...-++-++
T Consensus 841 Aegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLa--ph~hgesgw~AGAGGGGFiYLl~kEpqqkeaiE 916 (948)
T KOG4644|consen 841 AEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLA--PHKHGESGWAAGAGGGGFIYLLIKEPQQKEAIE 916 (948)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhc--cccccccchhccCCCCcEEEEEecCCCCHHHHH
Confidence 677899999999999999997653 223555566667777653 22333 34789999999999998765554443
No 44
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=79.19 E-value=7 Score=34.46 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 167 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~ 167 (210)
..++.++|+..++..|. +.+..-+--..|++..+.+.... .| +|+.|+|+| -+++++++.
T Consensus 195 ~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P~l~~~~~~l~~-~~-~~~~~SGSG--~tvf~l~~~ 254 (275)
T PRK14611 195 ISLLREGEEKKIEEVIE---NTLGEIALELYPEIKEVYRFLEY-LG-YKPFVSGSG--SSVYVFGKP 254 (275)
T ss_pred HHHHHcCCHHHHHHhcC---CcccHHHHHHCHHHHHHHHHHHh-CC-CCEEEeCcc--ccceeEeCC
Confidence 45788889887766532 22333333457888888776543 45 588999987 668888743
No 45
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=73.86 E-value=14 Score=33.98 Aligned_cols=66 Identities=27% Similarity=0.403 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHh--cCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecC-Ccee
Q 028349 132 EPLIQLNEILQR--APGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCAR 208 (210)
Q Consensus 132 pelD~Lve~A~~--~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~-~Ga~ 208 (210)
|-+..+...+.. .+|.+|.-++||| =.++|+.. ++.+++.++|-+.|.+. |....+-..+|. +||.
T Consensus 283 PGl~~il~~~~p~t~pGl~GiclSGAG--PT~lAlat-enf~eI~~~mv~~F~K~--------G~kcs~~~l~pa~Dga~ 351 (355)
T KOG1537|consen 283 PGLEAILKAALPATYPGLFGICLSGAG--PTALALAT-ENFQEIGEKMVEAFWKV--------GHKCSVASLKPALDGAG 351 (355)
T ss_pred ccHHHHHHhhCcccCCceeeEEecCCC--CeeEEEec-CcHHHHHHHHHHHHHhh--------CceeeeEeeccccCCcc
Confidence 566677777764 2599999999987 56888875 89999999999999874 777777777753 5554
No 46
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=73.82 E-value=6.6 Score=34.76 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=33.4
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHHHh
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEY 181 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~~y 181 (210)
-.|+++.+.+.+.+ .|+ +.|||.| -++.+|++. +.++.+.+.+++.|
T Consensus 216 ~~P~~~~~~~~l~~-~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~~ 263 (271)
T PRK00343 216 RYPEVAQALSWLLE-YAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEWL 263 (271)
T ss_pred hChHHHHHHHHHHh-CCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhhc
Confidence 46888888887765 787 8899876 678888876 35556666665433
No 47
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=68.83 E-value=7.4 Score=35.44 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=31.7
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHHH
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 179 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~~ 179 (210)
..|++........+ .|+.+++|||.| -|+.++++.+ .++.+.+.+.+
T Consensus 224 ~~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 224 LYPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred hChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHHHHHHHHHhhc
Confidence 45777664444443 588899999986 7899998875 45555555444
No 48
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=61.96 E-value=17 Score=32.92 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHhcCCC-e--eEEEccCCccceeEEEecc-ccHHHHH-HHHHHHhH
Q 028349 130 GSEPLIQLNEILQRAPGV-F--GARFSGAGFRGCCLALVDA-DRAEEAA-SYVRSEYF 182 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga-~--GaRmtGgGfGGcvIaLv~~-~~~~~~~-~~l~~~y~ 182 (210)
-.|++..+.+...+ .|+ . .++|||.| -|+.++++. +.+++.. +.+++.|.
T Consensus 205 ~~p~i~~~~~~l~~-~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 205 LRLDLKEKKHWLES-LWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred hChHHHHHHHHHHh-ccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 36888888887764 432 2 48899986 678888876 3455555 66655543
No 49
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=58.04 E-value=25 Score=24.13 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHH
Q 028349 129 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 179 (210)
Q Consensus 129 VS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~ 179 (210)
+|...+..|.++|.+ .|..-.|+|+.. +..+.-++.+.++++.+.+.+
T Consensus 21 i~~~~l~~la~ia~~-yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEK-YGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHH-HSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHH-hCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 455678889999986 676668998754 678888999999999988875
No 50
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=52.72 E-value=6.3 Score=17.34 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=4.5
Q ss_pred ccCCcc
Q 028349 153 SGAGFR 158 (210)
Q Consensus 153 tGgGfG 158 (210)
+|||||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 578887
No 51
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=42.33 E-value=2.6e+02 Score=25.30 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=48.7
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCC-------hh---HHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGS-------EP---LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRA 170 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~-------pe---lD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~ 170 (210)
++|+.++|++.||++.-.+-..+-...--+. |+ +=.+|...++ .|...+=..=|| =-+..|++.+..
T Consensus 217 ~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~~~~T~DAG--pNv~vl~~~~~~ 293 (305)
T TIGR01240 217 RKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTICYFTMDAG--PNVKVLYLAENL 293 (305)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCcEEEEEcCC--CCEEEEEccccH
Confidence 7789999999999988777555532211111 21 1133444443 465444444444 447778888999
Q ss_pred HHHHHHHHHHh
Q 028349 171 EEAASYVRSEY 181 (210)
Q Consensus 171 ~~~~~~l~~~y 181 (210)
+++.+.+.+.|
T Consensus 294 ~~v~~~~~~~~ 304 (305)
T TIGR01240 294 SKLFEFIYKLF 304 (305)
T ss_pred HHHHHHHHHhc
Confidence 99988887754
No 52
>PRK05905 hypothetical protein; Provisional
Probab=35.36 E-value=37 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCC
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAG 156 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgG 156 (210)
-+|++..+.+...+ .|+ .++|||.|
T Consensus 222 ~~P~i~~~~~~l~~-~g~-~a~MSGSG 246 (258)
T PRK05905 222 LYPNLLYKYNELLN-DGF-YTILSGAG 246 (258)
T ss_pred hChHHHHHHHHHHh-CCC-CEEEeCcc
Confidence 47888888877765 576 89999987
No 53
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=32.48 E-value=99 Score=27.69 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhh--hcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEe
Q 028349 109 SQDFGKLISASGLSSIY--NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 165 (210)
Q Consensus 109 ~~~fG~Lm~eSh~SLr~--~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv 165 (210)
+...|++..+...-+.. .-|+|+.|||.+++--....|++-|....-||.+.+-.-+
T Consensus 14 ~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSv 72 (255)
T COG0024 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISV 72 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeeh
Confidence 66778887777765543 3699999999999776655899999888888888765544
No 54
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=31.65 E-value=1e+02 Score=27.01 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHhhCCCHHHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASG 120 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh 120 (210)
.+|+.+||++.+..||.+.=
T Consensus 181 ~~A~~~gD~~~l~~Lla~Dv 200 (293)
T PRK09636 181 FAALASGDLDALVALLAPDV 200 (293)
T ss_pred HHHHHhCCHHHHHHHHhhCe
Confidence 77899999999999987654
No 55
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=31.30 E-value=1e+02 Score=27.10 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=16.3
Q ss_pred HHHhhCCCHHHHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGL 121 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~ 121 (210)
.+|+..||++.+..||.+.=.
T Consensus 174 ~~a~~~gD~~~l~~lL~~dv~ 194 (281)
T TIGR02957 174 VEAAQTGDLDGLLELLAEDVV 194 (281)
T ss_pred HHHHHhCCHHHHHHHHhhceE
Confidence 667888888888888877653
No 56
>PLN02407 diphosphomevalonate decarboxylase
Probab=31.22 E-value=3.4e+02 Score=25.42 Aligned_cols=81 Identities=19% Similarity=0.071 Sum_probs=48.7
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCC-------Ch---hHHHHHHHHHhcCCC-eeEEEccCCccceeEEEecccc
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECG-------SE---PLIQLNEILQRAPGV-FGARFSGAGFRGCCLALVDADR 169 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS-------~p---elD~Lve~A~~~~Ga-~GaRmtGgGfGGcvIaLv~~~~ 169 (210)
.+|++++|++.||++.-.+-..+-...--+ +| .+=.+|...++..|. ..+=-.=||= -+..|++++.
T Consensus 241 ~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGP--Nv~vl~~~~~ 318 (343)
T PLN02407 241 EEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGP--NAVLIALNRK 318 (343)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCC--CEEEEEChhh
Confidence 778999999999999887765553221111 11 122344444433354 2344445554 3566677777
Q ss_pred HHH-HHHHHHHHhHh
Q 028349 170 AEE-AASYVRSEYFE 183 (210)
Q Consensus 170 ~~~-~~~~l~~~y~~ 183 (210)
.++ +++.+.+.|..
T Consensus 319 ~~~~v~~~~~~~~~~ 333 (343)
T PLN02407 319 VAAQLLQRLLYYFPP 333 (343)
T ss_pred hHHHHHHHHHHhcCC
Confidence 776 88887776653
No 57
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=26.67 E-value=1e+02 Score=28.81 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=25.1
Q ss_pred ccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCC
Q 028349 153 SGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD 205 (210)
Q Consensus 153 tGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~ 205 (210)
.|||||| +....+++.+.+.+...+.+|. + ...-++++||+
T Consensus 209 iGGGf~~------~~~~~~~~~~~i~~~l~~~~~~-----~-~~~~li~EPGR 249 (394)
T cd06831 209 IGGGFTG------SEIQLEEVNHVIRPLLDVYFPE-----G-SGIQIIAEPGS 249 (394)
T ss_pred eCCCcCC------CCCCHHHHHHHHHHHHHHhcCc-----C-CCCEEEEeCCh
Confidence 5899986 2246777888887777654331 1 12345667765
No 58
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=25.05 E-value=1.7e+02 Score=26.08 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.6
Q ss_pred HHHhhCCCHHHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASG 120 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh 120 (210)
.+|...||++.+-.||.+.=
T Consensus 184 ~~a~~~gd~~~l~~ll~~d~ 203 (290)
T PRK09635 184 IEACSNGDLDTLLEVLDPGV 203 (290)
T ss_pred HHHHHhCCHHHHHHHhhhhh
Confidence 67888999999999996654
No 59
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=24.26 E-value=72 Score=29.91 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=18.0
Q ss_pred EEEccCCccceeE--EEeccccHHHHHHHHH
Q 028349 150 ARFSGAGFRGCCL--ALVDADRAEEAASYVR 178 (210)
Q Consensus 150 aRmtGgGfGGcvI--aLv~~~~~~~~~~~l~ 178 (210)
.-++|||.||.+| .+|++..+-.-..+++
T Consensus 38 ~e~~~gG~gg~vi~AVmVDpgav~qq~~r~q 68 (387)
T COG3064 38 IEASGGGGGGSVIDAVMVDPGAVVQQYGRIQ 68 (387)
T ss_pred ccccCCCCCcceeeeeEeCcHHHHHHHHHHH
Confidence 3567888889988 5566654444334444
No 60
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=23.15 E-value=2e+02 Score=25.00 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.8
Q ss_pred HHHhhCCCHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISA 118 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~e 118 (210)
.++|+++|.++|.++|.|
T Consensus 241 ~~~l~~~d~~~l~~~l~~ 258 (258)
T PF02153_consen 241 REALEAGDEEELEELLEQ 258 (258)
T ss_dssp HHHHHTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHhcC
Confidence 667889999999888865
No 61
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=22.92 E-value=3.6e+02 Score=27.20 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=55.6
Q ss_pred HHHHHHcc-ccccCCCCHHHHHHhh-ccCCHHHhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHH--hhhhhhh
Q 028349 20 VILQLIMI-LIFFQTVEEEVYEAHK-NELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLC--FINLWIY 95 (210)
Q Consensus 20 ~~l~~~~g-~~~l~~v~~~~~~~~~-~~l~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 95 (210)
..|++-|+ .+.=+..+||.|.... .+|-|.+++|..|++....|-...+++ ++..+| |-.|.-|
T Consensus 549 ~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI~~LKi------------vhrr~~NRfHSFLLy 616 (817)
T KOG1925|consen 549 EQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRIAMLKI------------VHRRVCNRFHSFLLY 616 (817)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 44666554 4445667888876543 578899999999999987655444332 122223 2223333
Q ss_pred hccchHHHhhCCCHHHHHHHHHHHH
Q 028349 96 FIGSGLEAWKSGNSQDFGKLISASG 120 (210)
Q Consensus 96 ~~~~~~~AL~~gD~~~fG~Lm~eSh 120 (210)
+ |-+.+++.+-++..|-+.+.+--
T Consensus 617 ~-Gy~p~aIrev~iN~fc~~~~EFa 640 (817)
T KOG1925|consen 617 L-GYTPQAIREVRINQFCHTLREFA 640 (817)
T ss_pred c-CCChhhhhhcCHHHHHHHHHHHH
Confidence 3 34478888888888888776643
No 62
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=21.79 E-value=79 Score=25.99 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=5.5
Q ss_pred EccCCcccee
Q 028349 152 FSGAGFRGCC 161 (210)
Q Consensus 152 mtGgGfGGcv 161 (210)
|.|||+||+-
T Consensus 1 M~~g~GG~s~ 10 (148)
T KOG3304|consen 1 MAQGGGGGSR 10 (148)
T ss_pred CCCCCCCCCc
Confidence 3455556654
No 63
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=20.14 E-value=1.3e+02 Score=21.89 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH
Q 028349 108 NSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 141 (210)
Q Consensus 108 D~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A 141 (210)
|...|+++++-.|..-|+.++--+.|+..+++..
T Consensus 33 ~gk~Fnkl~~lyHk~~Re~fE~e~ee~~elYD~~ 66 (69)
T PF11126_consen 33 DGKMFNKLLKLYHKQEREEFEAENEEVVELYDAV 66 (69)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999888988888765
Done!