Query 028349
Match_columns 210
No_of_seqs 221 out of 1438
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 1.2E-35 4.2E-40 281.4 14.0 127 49-210 381-518 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 3.7E-28 1.3E-32 226.4 14.2 125 49-210 347-475 (478)
3 1pie_A Galactokinase; galactos 99.9 3.7E-26 1.3E-30 208.4 18.4 150 21-210 266-416 (419)
4 1wuu_A Galactokinase; galactos 99.9 1E-25 3.5E-30 204.0 17.3 161 6-210 230-397 (399)
5 2cz9_A Probable galactokinase; 99.9 4.5E-25 1.5E-29 194.3 16.6 159 6-209 185-350 (350)
6 3gon_A Phosphomevalonate kinas 99.8 1.4E-19 4.7E-24 157.2 8.6 77 101-179 240-318 (335)
7 1kvk_A MK, mevalonate kinase; 99.8 5.6E-19 1.9E-23 159.4 11.9 115 50-209 264-379 (395)
8 3k85_A D-glycero-D-manno-hepto 99.8 3.3E-20 1.1E-24 166.8 2.8 95 50-180 227-322 (357)
9 3k17_A LIN0012 protein; protei 99.6 1E-15 3.4E-20 138.3 10.3 76 101-179 259-341 (365)
10 4hac_A Mevalonate kinase; GHMP 99.6 7.8E-15 2.7E-19 129.7 12.3 93 101-209 227-320 (321)
11 2hfs_A Mevalonate kinase, puta 99.6 9.4E-15 3.2E-19 127.9 12.4 98 101-209 234-332 (332)
12 2x7i_A Mevalonate kinase; tran 99.6 8.3E-15 2.8E-19 127.0 11.5 79 101-181 218-297 (308)
13 2oi2_A Mevalonate kinase; enzy 99.5 3.1E-14 1.1E-18 121.9 11.8 81 101-183 204-285 (292)
14 2pg9_A Phosphomevalonate kinas 99.5 6.4E-14 2.2E-18 124.8 13.1 76 101-178 242-319 (337)
15 1kkh_A Mevalonate kinase; mixe 99.4 3.1E-13 1.1E-17 117.5 9.5 76 101-179 230-305 (317)
16 1h72_C HK, homoserine kinase; 99.4 1.4E-12 4.7E-17 112.2 10.1 89 101-210 206-296 (296)
17 2gs8_A Mevalonate pyrophosphat 99.0 1.4E-09 4.6E-14 95.1 11.3 91 101-209 217-317 (317)
18 3hul_A HSK, HK, homoserine kin 98.8 1.8E-08 6.3E-13 88.2 10.5 91 101-209 195-288 (298)
19 3qt5_A Mevalonate diphosphate 98.7 4.3E-08 1.5E-12 87.3 10.7 96 101-210 226-331 (332)
20 3pyf_A 4-diphosphocytidyl-2-C- 98.4 3.2E-07 1.1E-11 80.7 6.4 92 101-210 207-300 (306)
21 1fi4_A Mevalonate 5-diphosphat 98.2 2.3E-05 7.8E-10 71.7 12.9 80 101-182 258-348 (416)
22 1uek_A 4-(cytidine 5'-diphosph 97.9 1.6E-05 5.3E-10 67.9 5.6 60 130-207 209-269 (275)
23 2hke_A Diphosphomevalonate dec 97.7 0.00026 8.8E-09 63.8 11.5 81 101-183 229-320 (380)
24 3f0n_A Mevalonate pyrophosphat 97.6 0.00067 2.3E-08 62.7 11.9 81 101-183 255-346 (414)
25 3lto_A Mevalonate diphosphate 97.3 0.0014 4.9E-08 58.4 10.0 81 101-183 220-310 (323)
26 2v8p_A 4-diphosphocytidyl-2-C- 97.0 4.6E-05 1.6E-09 65.0 -1.9 65 102-174 193-259 (271)
27 2ww4_A 4-diphosphocytidyl-2C-m 95.4 0.0082 2.8E-07 51.6 3.1 42 130-176 218-260 (283)
28 3okz_A Putative uncharacterize 54.2 23 0.00079 31.0 6.1 109 50-183 167-280 (306)
29 1vfj_A Nitrogen regulatory pro 34.2 1.3E+02 0.0045 21.7 6.8 52 131-183 10-83 (116)
30 2i9o_A MHB8A peptide; beta-hai 33.5 39 0.0013 20.3 2.9 14 168-181 21-34 (37)
31 2eg2_A Nitrogen regulatory pro 29.6 1.6E+02 0.0054 21.2 7.2 52 131-183 10-83 (112)
32 2j9c_A GLNK1, hypothetical nit 26.4 1.5E+02 0.0051 21.7 5.8 52 131-183 12-85 (119)
33 2cz4_A Hypothetical protein TT 25.6 1.6E+02 0.0055 21.9 5.9 53 130-183 33-99 (119)
34 3m05_A Uncharacterized protein 25.6 1.7E+02 0.0059 21.9 6.1 52 132-184 16-72 (114)
35 2jmp_A Chromosomal replication 23.0 29 0.00098 25.3 1.1 24 154-184 2-25 (107)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=1.2e-35 Score=281.44 Aligned_cols=127 Identities=30% Similarity=0.527 Sum_probs=115.9
Q ss_pred HHhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCC-------CHHHHHHHHHHHHH
Q 028349 49 TLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSG-------NSQDFGKLISASGL 121 (210)
Q Consensus 49 ~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~g-------D~~~fG~Lm~eSh~ 121 (210)
++++||+|||+||+||.++ ++||+++ |++.||+||++||.
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~---------------------------------~~al~~~~~~~~~~d~~~lg~lm~~sH~ 427 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKA---------------------------------LKMMTSATFHTDEDFFTDFGRLMNESQA 427 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------------------------------HHHHTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------------------HHHHHcCCcccchhHHHHHHHHHHHHHH
Confidence 4899999999999999999 7788886 59999999999999
Q ss_pred HhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEe---ccccHHHHHHHHHHHhHhh-chhhhhhcCCCce
Q 028349 122 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV---DADRAEEAASYVRSEYFEL-QPELASQLNADSA 197 (210)
Q Consensus 122 SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv---~~~~~~~~~~~l~~~y~~~-~p~~~~~~~~~~~ 197 (210)
|||++|+|||||+|.|+++|++ .|++|+||||||||||+|+|+ +++.++++++.|.+.|+++ +|.+.+. +++++
T Consensus 428 slr~~~~vS~peld~lv~~a~~-~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~-~~~~~ 505 (520)
T 3v2u_C 428 SCDKLYECSCIETNQICSIALA-NGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDE-ELKDA 505 (520)
T ss_dssp HHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHH-HHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccc-cCCCe
Confidence 9999999999999999999987 899999999999999999999 8899999999999999866 4554443 56789
Q ss_pred EEEeecCCceecC
Q 028349 198 VLICKPGDCARVI 210 (210)
Q Consensus 198 ~~~~~p~~Ga~v~ 210 (210)
+|+|+|++||+|+
T Consensus 506 ~~~~~p~~GA~i~ 518 (520)
T 3v2u_C 506 IIVSKPALGTCLY 518 (520)
T ss_dssp EEECCCCCCSEEE
T ss_pred EEEecCCCceEEe
Confidence 9999999999973
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.95 E-value=3.7e-28 Score=226.39 Aligned_cols=125 Identities=30% Similarity=0.491 Sum_probs=110.3
Q ss_pred HHhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhC---CCHHHHHHHHHHHHHHhhh
Q 028349 49 TLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKS---GNSQDFGKLISASGLSSIY 125 (210)
Q Consensus 49 ~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~---gD~~~fG~Lm~eSh~SLr~ 125 (210)
++++|++|+++|+.||.++ ++||++ +|++.||++|++||.++|+
T Consensus 347 ~~~~ra~h~~~e~~rv~~~---------------------------------~~aL~~~~~~d~~~lg~lm~~sh~slr~ 393 (478)
T 2a2c_A 347 KLYQRAKHVYSEAARVLQF---------------------------------KKICEEAPENMVQLLGELMNQSHMSCRD 393 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------------------HHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999 778887 9999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCC-CceEEEeecC
Q 028349 126 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNA-DSAVLICKPG 204 (210)
Q Consensus 126 ~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~-~~~~~~~~p~ 204 (210)
+|++|+|++|.|+++|++ .|++|+||||||||||+++|++++.+++++++|.+.|+++++.. +++ .+.+|+|+|+
T Consensus 394 l~~vs~peld~l~~~a~~-~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~~~~~p~ 469 (478)
T 2a2c_A 394 MYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGS---LAPEKQSLFATKPG 469 (478)
T ss_dssp TSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHHHC------------CCSEEEECCB
T ss_pred cccCCCHHHHHHHHHHHh-CCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhcCcc---ccCCCCcEEEEcCC
Confidence 999999999999999997 79999999999999999999999999999999999999864210 123 4689999999
Q ss_pred CceecC
Q 028349 205 DCARVI 210 (210)
Q Consensus 205 ~Ga~v~ 210 (210)
+||+++
T Consensus 470 ~Ga~~~ 475 (478)
T 2a2c_A 470 GGALVL 475 (478)
T ss_dssp CCCEEE
T ss_pred CCeEee
Confidence 999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.94 E-value=3.7e-26 Score=208.40 Aligned_cols=150 Identities=31% Similarity=0.444 Sum_probs=135.7
Q ss_pred HHHHHccccccCCCCHHHHHHhhccCC-HHHhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccc
Q 028349 21 ILQLIMILIFFQTVEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGS 99 (210)
Q Consensus 21 ~l~~~~g~~~l~~v~~~~~~~~~~~l~-~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (210)
.|++..++..+++++++++++.++.|+ +..++|+.|+++|+.|+.++
T Consensus 266 ~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~-------------------------------- 313 (419)
T 1pie_A 266 RMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIA-------------------------------- 313 (419)
T ss_dssp HHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence 444444588899999999999988884 56899999999999999999
Q ss_pred hHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHH
Q 028349 100 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 179 (210)
Q Consensus 100 ~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~ 179 (210)
++||+++|++.||++|+++|.++++.|++++|++|.+++.+++.+|++|+||||||||||+++|++.+.+++++++|.+
T Consensus 314 -~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~ 392 (419)
T 1pie_A 314 -QKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQ 392 (419)
T ss_dssp -HHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHH
T ss_pred -HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999997349999999999999999999999999999999999
Q ss_pred HhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 180 EYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 180 ~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
.|.++ ++.++.+|+++|++||+++
T Consensus 393 ~~~~~-------~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 393 VYEEV-------VGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp HHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred HHHHh-------cCCCCeEEEEcCCCCeeec
Confidence 99874 3788999999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.94 E-value=1e-25 Score=204.04 Aligned_cols=161 Identities=28% Similarity=0.420 Sum_probs=140.6
Q ss_pred cCcchhhhhhhchHH-------HHHHHccccccCCCCHHHHHHhhccCCHHHhhhhhhhhhhhhHHHHHHHhhhhhHHHH
Q 028349 6 CNGEYFHLILFSSFV-------ILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEII 78 (210)
Q Consensus 6 ~~~~~~~~~~~~~~~-------~l~~~~g~~~l~~v~~~~~~~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~ 78 (210)
+++...|....+.|. ..++.|+...+|+++++++.+.++.+++..++|+.|+++|+.|+.++
T Consensus 230 ~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~----------- 298 (399)
T 1wuu_A 230 TNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQA----------- 298 (399)
T ss_dssp EEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred EECCCccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHH-----------
Confidence 455555555545563 34578888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCcc
Q 028349 79 LEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 158 (210)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfG 158 (210)
++||+++|++.||++|+++|.++++.|++++|++|.+++.+++..|++|+||||+|||
T Consensus 299 ----------------------~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~G 356 (399)
T 1wuu_A 299 ----------------------AAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFG 356 (399)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSE
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCc
Confidence 7899999999999999999999999899999999999999985259999999999999
Q ss_pred ceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 159 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 159 GcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
||+++|++.+.++++.+.|.+.| +..+.+|+++|++||+++
T Consensus 357 g~v~~l~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 357 GCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHC-----------SSCCEEEEECCCCCSEEC
T ss_pred cEEEEEEccchHHHHHHHHHHHh-----------CCCCcEEEEcCCCCeeec
Confidence 99999999988999999988866 346789999999999975
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.93 E-value=4.5e-25 Score=194.34 Aligned_cols=159 Identities=26% Similarity=0.321 Sum_probs=136.0
Q ss_pred cCcchhhhhhhchHHH-------HHHHccccccCCCCHHHHHHhhccCCHHHhhhhhhhhhhhhHHHHHHHhhhhhHHHH
Q 028349 6 CNGEYFHLILFSSFVI-------LQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEII 78 (210)
Q Consensus 6 ~~~~~~~~~~~~~~~~-------l~~~~g~~~l~~v~~~~~~~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~ 78 (210)
++....|..+-+.|.. ..+.++++.||+++.+++ ..+++..++|..|++.|+.|+.++
T Consensus 185 ~~~~~~~~~~t~~~~~r~~~~~~a~~~~~~~~lr~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~----------- 249 (350)
T 2cz9_A 185 FYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGEL----SKLPPLHRKFFGYIVRENARVLEV----------- 249 (350)
T ss_dssp EECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGG----GGSCHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred EECCCCCccccchHHHHHHHHHHHHHHhChhhhhhCCHHHH----hhCCHHHHHHHHHHhhHHHHHHHH-----------
Confidence 4555556555555542 455678888999988766 457888888999999999999988
Q ss_pred HHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCcc
Q 028349 79 LEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 158 (210)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfG 158 (210)
.+||.++|++.||++|+++|.++++.|++++|++|.+++.+++ .|++|+||||+|||
T Consensus 250 ----------------------~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG~G 306 (350)
T 2cz9_A 250 ----------------------RDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAGFG 306 (350)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSS
T ss_pred ----------------------HHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCCCc
Confidence 7899999999999999999999998899999999999999996 79999999999999
Q ss_pred ceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceec
Q 028349 159 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 209 (210)
Q Consensus 159 GcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v 209 (210)
||+++|++++.++++.++|.+.|.+. ++.++.+|+++|++||++
T Consensus 307 ~~v~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 307 GSAIALVDKEDAETIGEEILREYLKR-------FPWKARHFIVEPSDGVGI 350 (350)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHHH-------CCSCCEEEEECEECCSBC
T ss_pred eEEEEEEchhhHHHHHHHHHHHHHHh-------hCCCCcEEEecCCCCCCC
Confidence 99999999988999999999999875 488899999999999975
No 6
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.79 E-value=1.4e-19 Score=157.24 Aligned_cols=77 Identities=22% Similarity=0.142 Sum_probs=66.0
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhh-hcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIY-NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~-~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~ 178 (210)
.+||+++|++.||++|+++|.+|++ .+++|+|++|.|+++|++ .|+ ||||||||||||+|||++.+ .++.+.++++
T Consensus 240 ~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~~~~~~~i~~~~~ 317 (335)
T 3gon_A 240 VEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFDAQSTKTLKNRWA 317 (335)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-CCc-EEEEccccchheEEEEECCHHHHHHHHHHHH
Confidence 7889999999999999999999998 569999999999999986 675 89999999999999999753 4444555444
Q ss_pred H
Q 028349 179 S 179 (210)
Q Consensus 179 ~ 179 (210)
+
T Consensus 318 ~ 318 (335)
T 3gon_A 318 D 318 (335)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.78 E-value=5.6e-19 Score=159.43 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=99.0
Q ss_pred HhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCC
Q 028349 50 LAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYEC 129 (210)
Q Consensus 50 ~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeV 129 (210)
.++|+.|++.|+.|+..+. +.||.++|++.||++|+++|.++++ |++
T Consensus 264 ~~~~~~~~~~~~~~~l~~~--------------------------------~~al~~~d~~~lg~lm~~~~~~l~~-~~~ 310 (395)
T 1kvk_A 264 LLTSIDAISLECERVLGEM--------------------------------AAAPVPEQYLVLEELMDMNQHHLNA-LGV 310 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------------------------TTCCCHHHHHHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHHHHHhh--------------------------------hccccHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 5678888888888876650 3467888999999999999999997 899
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEee-cCCcee
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCAR 208 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~-p~~Ga~ 208 (210)
++|++|.+++.+++ .|+ |+||||||||||+++|++++..+++++.+.+.|.+. ++ .+|+++ ++.|++
T Consensus 311 ~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~--------g~--~~~~~~~~~~G~~ 378 (395)
T 1kvk_A 311 GHASLDQLCQVTAA-HGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGC--------GF--DCWETSIGAPGVS 378 (395)
T ss_dssp CCHHHHHHHHHHHH-TTC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHT--------TC--EEEEEEESCCCSE
T ss_pred CCHHHHHHHHHHHH-cCC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHc--------CC--EEEEEecCCCcEE
Confidence 99999999999987 799 999999999999999999888888999998888763 33 378888 889987
Q ss_pred c
Q 028349 209 V 209 (210)
Q Consensus 209 v 209 (210)
+
T Consensus 379 v 379 (395)
T 1kvk_A 379 M 379 (395)
T ss_dssp E
T ss_pred E
Confidence 6
No 8
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=3.3e-20 Score=166.81 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=73.2
Q ss_pred HhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhh-cC
Q 028349 50 LAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYN-YE 128 (210)
Q Consensus 50 ~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~-ye 128 (210)
.++|+.|.++| ||.++ ++||+++|++.||++|+++|.+++++ |+
T Consensus 227 ~~~~~~~~i~~--~~~~~---------------------------------~~aL~~~d~~~lg~lm~~~~~~l~~~~~~ 271 (357)
T 3k85_A 227 TAIEAMHKIKQ--SAIDT---------------------------------KLALLKGDVGEFARILGEGWENKKKMAGA 271 (357)
T ss_dssp CTTHHHHHHHH--HHHHH---------------------------------HHHHTTTCHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHH--HHHHH---------------------------------HHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 45678888876 78777 78999999999999999999999987 99
Q ss_pred CCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHH
Q 028349 129 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 180 (210)
Q Consensus 129 VS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~ 180 (210)
||+|++|.+++.|++ .|++|+||||||||||+++|++++.++++.++|++.
T Consensus 272 vs~p~ld~l~~~a~~-~Ga~GaklsGaG~gG~vial~~~~~~~~~~~~l~~~ 322 (357)
T 3k85_A 272 ITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNL 322 (357)
T ss_dssp -------CCSCTTTT-SCCSEEEECCCC---CEEEECCHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHh-cCCeEeEecccCCCCEEEEEecHHHHHHHHHHHHHC
Confidence 999999999999986 799999999999999999999998888888887753
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.62 E-value=1e-15 Score=138.27 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=66.7
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCC------CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYEC------GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEA 173 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeV------S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~ 173 (210)
++||+++|++.||++|+++|.+|++ +++ |+|++|.|++.|++ .|++ +||||||||||+++|++.+ .++++
T Consensus 259 ~~aL~~gd~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgGg~vial~~~~~~~~~l 335 (365)
T 3k17_A 259 IQAFHTKDEELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGGDCGIAFSKTKELAEKL 335 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSSSEEEEEESSHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCCCEEEEEECCHHHHHHH
Confidence 7899999999999999999999987 776 99999999999986 7888 9999999999999999874 45555
Q ss_pred HHHHHH
Q 028349 174 ASYVRS 179 (210)
Q Consensus 174 ~~~l~~ 179 (210)
.+++++
T Consensus 336 ~~~l~~ 341 (365)
T 3k17_A 336 VNEWEK 341 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 10
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.59 E-value=7.8e-15 Score=129.74 Aligned_cols=93 Identities=27% Similarity=0.373 Sum_probs=78.9
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 180 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~~ 180 (210)
.+||.++|++.||++|+++|. +++.+++++|++|.+++.+++ .|++|+||||+|+|||+++|++++.++++.+.+++.
T Consensus 227 ~~al~~~d~~~lg~~~~~~~~-~~~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~ 304 (321)
T 4hac_A 227 EQLVLSGDYASIGRLMNVNQG-LLDALGVNILELSQLIYSARA-AGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGA 304 (321)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-HHHHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhC
Confidence 578999999999999999986 556789999999999999986 799999999999999999999777888877776542
Q ss_pred hHhhchhhhhhcCCCceEEEeecC-Cceec
Q 028349 181 YFELQPELASQLNADSAVLICKPG-DCARV 209 (210)
Q Consensus 181 y~~~~p~~~~~~~~~~~~~~~~p~-~Ga~v 209 (210)
+ ..+|++++. +|++|
T Consensus 305 ------------g--~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 305 ------------G--GKVTITKPTEQGLKV 320 (321)
T ss_dssp ------------T--CEEEEECBCSCSSEE
T ss_pred ------------C--CeEEEEEECCCceec
Confidence 2 257788766 67765
No 11
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.59 E-value=9.4e-15 Score=127.93 Aligned_cols=98 Identities=19% Similarity=0.282 Sum_probs=81.5
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~~ 179 (210)
.++|+++|++.||++|+++|..++. |++++|++|.+++.+++ .|++|+||||+|+|||+++|++.+ .++++.+.+.+
T Consensus 234 ~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~ 311 (332)
T 2hfs_A 234 REALQKGDLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKA 311 (332)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHH
Confidence 6789999999999999999988876 68999999999999986 799999999999999999999876 46888888888
Q ss_pred HhHhhchhhhhhcCCCceEEEeecCCceec
Q 028349 180 EYFELQPELASQLNADSAVLICKPGDCARV 209 (210)
Q Consensus 180 ~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v 209 (210)
.|... +. ...+.+.|++||++
T Consensus 312 ~~~~~--------~~-~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 312 KCPEA--------KF-IWRYTVQPSAASNL 332 (332)
T ss_dssp HCTTC--------CE-EEEEEECCSCC---
T ss_pred HHhcC--------Cc-eEEEEeccCCCCCC
Confidence 76642 11 23467889999974
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.58 E-value=8.3e-15 Score=127.02 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=71.7
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~ 179 (210)
.++|+++|++.||++|+++|.++++ +++++|++|.+++.+++ .|++|+||||+|+|||+++|++. +.++++.+.+.+
T Consensus 218 ~~al~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~ 295 (308)
T 2x7i_A 218 SDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEK 295 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHh
Confidence 6789999999999999999999988 79999999999999987 79999999999999999999987 677777777776
Q ss_pred Hh
Q 028349 180 EY 181 (210)
Q Consensus 180 ~y 181 (210)
.|
T Consensus 296 ~~ 297 (308)
T 2x7i_A 296 AG 297 (308)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.55 E-value=3.1e-14 Score=121.90 Aligned_cols=81 Identities=26% Similarity=0.326 Sum_probs=72.7
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEecc-ccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~-~~~~~~~~~l~~ 179 (210)
.++|+++|++.||++|+++|..+++ +++++|++|.+++.+++ .|++|+||||+|+|||+++|++. +.++++.+.+++
T Consensus 204 ~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~ 281 (292)
T 2oi2_A 204 EIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEE 281 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHh
Confidence 5789999999999999999999987 79999999999999986 79999999999999999999987 677788888777
Q ss_pred HhHh
Q 028349 180 EYFE 183 (210)
Q Consensus 180 ~y~~ 183 (210)
.+.+
T Consensus 282 ~~~~ 285 (292)
T 2oi2_A 282 KGAV 285 (292)
T ss_dssp HTCS
T ss_pred cCcc
Confidence 6553
No 14
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.53 E-value=6.4e-14 Score=124.80 Aligned_cols=76 Identities=22% Similarity=0.139 Sum_probs=65.2
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhc-CCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNY-ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~y-eVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~ 178 (210)
++||.++|++.||++|+++|.++++.. ++++|++|.+++.|++ .|++ +||||||||||+++|++.+ .++++.++++
T Consensus 242 ~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~~~~~~~~~~~l~ 319 (337)
T 2pg9_A 242 VEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFDAQSTKTLKNRWA 319 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECCHHHHHHHHHHHH
Confidence 778999999999999999999998754 3999999999999986 7999 9999999999999999864 4455544443
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.43 E-value=3.1e-13 Score=117.54 Aligned_cols=76 Identities=32% Similarity=0.469 Sum_probs=67.3
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~~ 179 (210)
.+++..+|++.||++|+++|..+++ +++++|++|.+++.+++ .| +|+||||+|+|||+++|++.+.++++.+++++
T Consensus 230 ~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~-~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~~ 305 (317)
T 1kkh_A 230 DEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNK 305 (317)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHh-cC-ceeEEeecCCCCEEEEEechhhHHHHHHHHHh
Confidence 4678889999999999999988875 79999999999999986 68 99999999999999999998777777666653
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.38 E-value=1.4e-12 Score=112.22 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=74.5
Q ss_pred HHHhhCCCHHHHHHHH--HHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLI--SASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm--~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~ 178 (210)
.+||.++|++.||++| |..|+.++. +++|++|.+++.+++ . ++|+||||+|+ |+++|++++.++++.+.++
T Consensus 206 ~~al~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~-~-a~ga~~sGsG~--~v~~l~~~~~~~~~~~~l~ 278 (296)
T 1h72_C 206 VYALYNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKD-K-VYGITISGSGP--SIIAFPKEEFIDEVENILR 278 (296)
T ss_dssp HHHHHTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTT-T-EEEEEECTTSS--CEEEEECGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHh-h-cceEEEecCCh--heEEEecHHHHHHHHHHHH
Confidence 7789999999999999 677776654 799999999999986 5 88999999998 8999997778888888888
Q ss_pred HHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349 179 SEYFELQPELASQLNADSAVLICKPGDCARVI 210 (210)
Q Consensus 179 ~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~ 210 (210)
+.|.. .++++|+.|++++
T Consensus 279 ~~~~~--------------~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 279 DYYEN--------------TIRTEVGKGVEVV 296 (296)
T ss_dssp HHCSC--------------EEEECBCCCCEEC
T ss_pred HhccC--------------ceeccCCCCeEeC
Confidence 76543 1277889999875
No 17
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.03 E-value=1.4e-09 Score=95.11 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=72.7
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhH-------HHHHH---HHHhcCCCeeEEEccCCccceeEEEeccccH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPL-------IQLNE---ILQRAPGVFGARFSGAGFRGCCLALVDADRA 170 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pel-------D~Lve---~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~ 170 (210)
+.||.++|++.||++|+++|..|...|..++|++ ..+.+ .++. .|+.|+-|+|+| +|+++|++++.+
T Consensus 217 ~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~SGaG--ptv~~l~~~~~~ 293 (317)
T 2gs8_A 217 LTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAG--PNVKVLCLEKDL 293 (317)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEEEEEEGGGH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEecCC--CeEEEEEcHHHH
Confidence 7889999999999999999999998877776653 44443 3333 688899998875 899999988877
Q ss_pred HHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceec
Q 028349 171 EEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 209 (210)
Q Consensus 171 ~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v 209 (210)
+++.+.+.+ ...+|++++++|++|
T Consensus 294 ~~v~~~l~~---------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 294 AQLAERLGK---------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp HHHHHHHHT---------------TSEEEEEEBCCCCCC
T ss_pred HHHHHHHhc---------------CCeEEEEecCCCCCC
Confidence 777666655 247999999999986
No 18
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=98.82 E-value=1.8e-08 Score=88.24 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=67.5
Q ss_pred HHHhhCCCHHHHHHHHHH--HHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccccHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISA--SGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 178 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~e--Sh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~~~~~~l~ 178 (210)
..||.++|++.||++|+. .|+..+.. .+|+++.+++.+++ .|++|++|||+| +|+++|++.+.++++.+.++
T Consensus 195 ~~al~~~d~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~~l~ 268 (298)
T 3hul_A 195 IAAILRNDMTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPRNLANKLQTSLQ 268 (298)
T ss_dssp HHHHTTTCHHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECHHHHHHHHHHHH
Confidence 678999999999999973 35555432 47999999999986 899999999988 58999998767766655543
Q ss_pred HHhHhhchhhhhhcCCCceEEEeecC-Cceec
Q 028349 179 SEYFELQPELASQLNADSAVLICKPG-DCARV 209 (210)
Q Consensus 179 ~~y~~~~p~~~~~~~~~~~~~~~~p~-~Ga~v 209 (210)
+ . +....++++++. .|++|
T Consensus 269 ~----~--------~~~~~~~~~~~~~~Ga~v 288 (298)
T 3hul_A 269 T----L--------EIDADVLLLDVEGSGAEV 288 (298)
T ss_dssp T----T--------CCSSEEEEEEBCCCCCEE
T ss_pred h----c--------CCCcEEEEcccCCCceEE
Confidence 3 2 445578888876 67776
No 19
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=98.75 E-value=4.3e-08 Score=87.28 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=73.4
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCC-------CChhHHHHHHHHH--hcCCCeeEEEccCCccceeEEEeccccHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYEC-------GSEPLIQLNEILQ--RAPGVFGARFSGAGFRGCCLALVDADRAE 171 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeV-------S~pelD~Lve~A~--~~~Ga~GaRmtGgGfGGcvIaLv~~~~~~ 171 (210)
+.||.++|++.||++|...+..|...|-- -.|+++.+++.+. ...|++|+.++|+ |+++++|++.+.++
T Consensus 226 ~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGa--GPtv~~l~~~~~a~ 303 (332)
T 3qt5_A 226 KEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDA--GPNVKVLVEKKNKQ 303 (332)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCS--SSCEEEEEEHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCC--CCcEEEEECHHHHH
Confidence 77899999999999998665555443321 3689998888884 1379999999966 58999999887777
Q ss_pred HHHHHHHHHhHhhchhhhhhcCCCceEEEe-ecCCceecC
Q 028349 172 EAASYVRSEYFELQPELASQLNADSAVLIC-KPGDCARVI 210 (210)
Q Consensus 172 ~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~-~p~~Ga~v~ 210 (210)
++.+.|++.|.. ..++++ .|+.|++++
T Consensus 304 ~v~~~l~~~~~~------------~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 304 AVMEQFLKVFDE------------SKIIASDIISSGVEII 331 (332)
T ss_dssp HHHHHHHTTSCG------------GGEEEEEBCSSCCEEC
T ss_pred HHHHHHHHhCCC------------ceEEEeccccCCcEec
Confidence 777777654432 368888 999999875
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=98.40 E-value=3.2e-07 Score=80.66 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=66.2
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHHH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 179 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~~ 179 (210)
..+|.++|++.+++.|....+..+ ...+|+++.+++.+++ .|++|++|||+| +|+++|++.+ .++++.+.+.+
T Consensus 207 ~~al~~~d~~~l~~~l~n~le~~~---~~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~ 280 (306)
T 3pyf_A 207 LAALAAGDPDQLAPLLGNEMQAAA---VSLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSG 280 (306)
T ss_dssp HHHHHHTCHHHHGGGCEETTHHHH---HHHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHhccchHHHH---HHhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHh
Confidence 678899999999998842222111 2347999999999986 899999999987 8999999863 34444444433
Q ss_pred HhHhhchhhhhhcCCCceEEEee-cCCceecC
Q 028349 180 EYFELQPELASQLNADSAVLICK-PGDCARVI 210 (210)
Q Consensus 180 ~y~~~~p~~~~~~~~~~~~~~~~-p~~Ga~v~ 210 (210)
. |....+++++ +..||+|+
T Consensus 281 ----~--------g~~~~v~~~~~~~~Ga~v~ 300 (306)
T 3pyf_A 281 ----A--------GVCRTVRVATGPVPGARVV 300 (306)
T ss_dssp ----T--------TSSSEEEEEEECCBCSEEC
T ss_pred ----c--------CCcceEEEeecCCCCCEEe
Confidence 1 4555677755 78888874
No 21
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.15 E-value=2.3e-05 Score=71.74 Aligned_cols=80 Identities=11% Similarity=-0.051 Sum_probs=62.4
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhcCCCCh-------hHHHHHHHHHh--c-CC-CeeEEEccCCccceeEEEecccc
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSE-------PLIQLNEILQR--A-PG-VFGARFSGAGFRGCCLALVDADR 169 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~p-------elD~Lve~A~~--~-~G-a~GaRmtGgGfGGcvIaLv~~~~ 169 (210)
+.||.++|++.||++|.++|..+...+-.+.| +...+.+.+.+ . .| +.++-|+|+| .++++|++.+.
T Consensus 258 ~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~~ 335 (416)
T 1fi4_A 258 RKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAEN 335 (416)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHHH
Confidence 78899999999999999998888765554444 45666665532 1 37 6788898876 78999998888
Q ss_pred HHHHHHHHHHHhH
Q 028349 170 AEEAASYVRSEYF 182 (210)
Q Consensus 170 ~~~~~~~l~~~y~ 182 (210)
++++.+.+.+.|.
T Consensus 336 ~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 336 ESKLFAFIYKLFG 348 (416)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 8899999988776
No 22
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=97.86 E-value=1.6e-05 Score=67.87 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCce
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCA 207 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga 207 (210)
++|+++.+++.+++ .|++|++|||+| +|+++|++.+ .++++.+.+.+ .. .+|++++++|-
T Consensus 209 ~~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~~--------------~~-~~~~~~~~~g~ 269 (275)
T 1uek_A 209 LFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALRA--------------WG-RAWAGTLGGGD 269 (275)
T ss_dssp HCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHTT--------------TS-EEEEEEECCC-
T ss_pred hChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhhh--------------cc-EEEEEEecCCC
Confidence 47999999999986 799999999998 6999999764 44444443322 23 68999988873
No 23
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=97.72 E-value=0.00026 Score=63.78 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=59.1
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhh----h---cCCCChhHHHHHHHHHh--cC-C-CeeEEEccCCccceeEEEecccc
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIY----N---YECGSEPLIQLNEILQR--AP-G-VFGARFSGAGFRGCCLALVDADR 169 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~----~---yeVS~pelD~Lve~A~~--~~-G-a~GaRmtGgGfGGcvIaLv~~~~ 169 (210)
+.||.++|++.||++|.+.+..+.. . ...-.|+...+.+.+.+ .. | +.++-|+|+| -++++|++.+.
T Consensus 229 ~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv~~l~~~~~ 306 (380)
T 2hke_A 229 SRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANCFLFVLKED 306 (380)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEEEEGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcEEEEECHHH
Confidence 6789999999999999876655432 1 22345666777766543 13 8 7788998665 67888888877
Q ss_pred HHHHHHHHHHHhHh
Q 028349 170 AEEAASYVRSEYFE 183 (210)
Q Consensus 170 ~~~~~~~l~~~y~~ 183 (210)
++++.+.+.+.|..
T Consensus 307 ~~~v~~~l~~~~~~ 320 (380)
T 2hke_A 307 LPEAVAMLMEHFPT 320 (380)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccc
Confidence 88888888887753
No 24
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=97.55 E-value=0.00067 Score=62.74 Aligned_cols=81 Identities=14% Similarity=0.057 Sum_probs=58.1
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhc-------CCCChhHHHHHHHHHhc----CCCeeEEEccCCccceeEEEecccc
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNY-------ECGSEPLIQLNEILQRA----PGVFGARFSGAGFRGCCLALVDADR 169 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~y-------eVS~pelD~Lve~A~~~----~Ga~GaRmtGgGfGGcvIaLv~~~~ 169 (210)
+.||.++|++.||++|......+-..| -.=.|+...+++.+.+. .|+.++-++|||=. +++|++.+.
T Consensus 255 ~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGPn--v~vl~~~~~ 332 (414)
T 3f0n_A 255 TRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPN--AVIFTLEDT 332 (414)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSC--EEEEEEHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCCC--EEEEEeccc
Confidence 779999999999999775543333211 11356666666666542 28899999999855 566677889
Q ss_pred HHHHHHHHHHHhHh
Q 028349 170 AEEAASYVRSEYFE 183 (210)
Q Consensus 170 ~~~~~~~l~~~y~~ 183 (210)
.+++.+.|.+.|..
T Consensus 333 ~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 333 VAEFVAAVRHSFPP 346 (414)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999876654
No 25
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=97.25 E-value=0.0014 Score=58.43 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=58.2
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhhhc-------CCCChhHHHHHHHHHh---cCCCeeEEEccCCccceeEEEeccccH
Q 028349 101 LEAWKSGNSQDFGKLISASGLSSIYNY-------ECGSEPLIQLNEILQR---APGVFGARFSGAGFRGCCLALVDADRA 170 (210)
Q Consensus 101 ~~AL~~gD~~~fG~Lm~eSh~SLr~~y-------eVS~pelD~Lve~A~~---~~Ga~GaRmtGgGfGGcvIaLv~~~~~ 170 (210)
++||+++|++.||++|...+..|-..+ -.=.|+...+++.+.+ ..|++|+.++|||-. +++|++++..
T Consensus 220 ~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGPn--v~~l~~~~~~ 297 (323)
T 3lto_A 220 LNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGPN--VHLLYRSDQT 297 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSSC--EEEEECGGGH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCCC--eEEEEecccH
Confidence 789999999999999876654453311 1135555555555543 368999999999865 5666788899
Q ss_pred HHHHHHHHHHhHh
Q 028349 171 EEAASYVRSEYFE 183 (210)
Q Consensus 171 ~~~~~~l~~~y~~ 183 (210)
+++.+.|.+.+..
T Consensus 298 ~~v~~~l~~~~~~ 310 (323)
T 3lto_A 298 DLARQFKSDHLVG 310 (323)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhHh
Confidence 9999998776543
No 26
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=97.05 E-value=4.6e-05 Score=65.03 Aligned_cols=65 Identities=14% Similarity=-0.032 Sum_probs=45.2
Q ss_pred HHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEE-EccCCccceeEEEeccc-cHHHHH
Q 028349 102 EAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGAR-FSGAGFRGCCLALVDAD-RAEEAA 174 (210)
Q Consensus 102 ~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaR-mtGgGfGGcvIaLv~~~-~~~~~~ 174 (210)
++|.++|++.|+++|.. .+...-...+|+++.+++.+++ .|+ ++ |||+| +|+++|++.+ .++++.
T Consensus 193 ~al~~~d~~~~~~~~~n---~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~~~a~~~~ 259 (271)
T 2v8p_A 193 EEKIQRIISGEVEEIEN---VLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGASEELKKAA 259 (271)
T ss_dssp HHHHHHHHTTCGGGCCB---HHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCCHHHHHHH
T ss_pred HHhhcCCHHHHHHHHhC---ChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCHHHHHHHH
Confidence 56677778777777621 1111112358999999999986 687 89 99998 7999999875 344433
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=95.39 E-value=0.0082 Score=51.62 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=32.7
Q ss_pred CChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEeccc-cHHHHHHH
Q 028349 130 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASY 176 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv~~~-~~~~~~~~ 176 (210)
.+|+++.+++.+++ .| |++|+|+| +|+++|++.+ .++++.+.
T Consensus 218 ~~p~l~~i~~~~~~-~G--~a~~SGsG--~tvf~l~~~~~~a~~~~~~ 260 (283)
T 2ww4_A 218 RFREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTESEARQVLEQ 260 (283)
T ss_dssp HCHHHHHHHHHHHT-TS--CEEECTTS--SCEEEEESSHHHHHHHHHH
T ss_pred cChHHHHHHHHHHH-cC--CceECCcc--cceEEEeCCHHHHHHHHHH
Confidence 58999999999985 78 89999987 8999999754 24444443
No 28
>3okz_A Putative uncharacterized protein GBS0355; structural genomics, PSI-biology; 2.70A {Streptococcus agalactiae}
Probab=54.20 E-value=23 Score=30.99 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=72.6
Q ss_pred Hhhhhhhhh--hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhc
Q 028349 50 LAKRAEHYF--TENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNY 127 (210)
Q Consensus 50 ~~~Ra~Hv~--~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~y 127 (210)
.|-|.||.. ..-.|+....++|+.-. .+++..+.+..+.+++..-...+..+.
T Consensus 167 ~y~R~R~~~~~gD~~R~~RQq~vl~al~-------------------------~k~~s~~~l~~~~~ll~~~~~~v~Tdl 221 (306)
T 3okz_A 167 VYSRMRYDDPEGDYGRQKRQREVIQKVL-------------------------KKILALNSISSYKKILSAVSNNMQTNI 221 (306)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHHHH-------------------------HHHHHHCCHHHHHHHHHHTGGGEEESS
T ss_pred HhHHhhcCCCCCcHHHHHHHHHHHHHHH-------------------------HHHhCCcchhhHHHHHHHHHhheEeCC
Confidence 588888865 45677777766665532 233445678888889888887777666
Q ss_pred CCCChhHHHHHHHHHhcCCCeeEEEccCCc---cceeEEEeccccHHHHHHHHHHHhHh
Q 028349 128 ECGSEPLIQLNEILQRAPGVFGARFSGAGF---RGCCLALVDADRAEEAASYVRSEYFE 183 (210)
Q Consensus 128 eVS~pelD~Lve~A~~~~Ga~GaRmtGgGf---GGcvIaLv~~~~~~~~~~~l~~~y~~ 183 (210)
..+..++..|+..+....++--..+.|-|. .|.-.-+++++...++...+++...-
T Consensus 222 ~~~~~~~~~l~~~~~~~~~i~~~~l~G~~~~i~~g~sY~~~d~~~~~~i~~~l~~~l~l 280 (306)
T 3okz_A 222 EISSKTIPNLLAYKDSLEHIKSYQLKGEDATLSDGGSYQILTKKHLLAVQNRIKKELDK 280 (306)
T ss_dssp CCCTTCHHHHHTTTTGGGCEEEEEECCEEEECSSSBEEEECCHHHHHHHHHHHHHHTTC
T ss_pred CcChHHHHHHHHHHHhcCCCceEEccCCceeecCCeEEEEcCHHHHHHHHHHHHHHcCC
Confidence 666556666666554333444456776653 45556667788899998888886653
No 29
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=34.15 E-value=1.3e+02 Score=21.74 Aligned_cols=52 Identities=17% Similarity=0.072 Sum_probs=36.1
Q ss_pred ChhHHHHHHHHHhcCCCee---EEEccCCcc-c------------------eeEEEeccccHHHHHHHHHHHhHh
Q 028349 131 SEPLIQLNEILQRAPGVFG---ARFSGAGFR-G------------------CCLALVDADRAEEAASYVRSEYFE 183 (210)
Q Consensus 131 ~pelD~Lve~A~~~~Ga~G---aRmtGgGfG-G------------------cvIaLv~~~~~~~~~~~l~~~y~~ 183 (210)
...+|.+.+.+.+ .|+.| ....|-|-- | -+..+|+.+.++.+++.+.+....
T Consensus 10 ~~~~~~V~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 10 PEKLNEVLKALFQ-AEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GGGHHHHHHHHHH-TTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh-CCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3456777777765 67655 244444421 1 488888999999999999997764
No 30
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=33.48 E-value=39 Score=20.30 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=9.5
Q ss_pred ccHHHHHHHHHHHh
Q 028349 168 DRAEEAASYVRSEY 181 (210)
Q Consensus 168 ~~~~~~~~~l~~~y 181 (210)
..++.|.+++.+..
T Consensus 21 saaeayakriaeam 34 (37)
T 2i9o_A 21 SAAEAYAKRIAEAM 34 (37)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45777777777654
No 31
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=29.59 E-value=1.6e+02 Score=21.19 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHhcCCCeeE---EEccCCc--cc-----------------eeEEEeccccHHHHHHHHHHHhHh
Q 028349 131 SEPLIQLNEILQRAPGVFGA---RFSGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 183 (210)
Q Consensus 131 ~pelD~Lve~A~~~~Ga~Ga---RmtGgGf--GG-----------------cvIaLv~~~~~~~~~~~l~~~y~~ 183 (210)
...+|.+.+...+ .|+.|. ...|-|- |. -+..+|+.+.++.+++.+.+....
T Consensus 10 ~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 2eg2_A 10 PFKLDEVKDALVE-IGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQT 83 (112)
T ss_dssp GGGHHHHHHHHHH-TTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH-CCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3456777777765 676552 4444442 11 377788889999999999998764
No 32
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=26.35 E-value=1.5e+02 Score=21.70 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=36.0
Q ss_pred ChhHHHHHHHHHhcCCCeeE---EEccCCc-cce------------------eEEEeccccHHHHHHHHHHHhHh
Q 028349 131 SEPLIQLNEILQRAPGVFGA---RFSGAGF-RGC------------------CLALVDADRAEEAASYVRSEYFE 183 (210)
Q Consensus 131 ~pelD~Lve~A~~~~Ga~Ga---RmtGgGf-GGc------------------vIaLv~~~~~~~~~~~l~~~y~~ 183 (210)
...+|.+.+.+.+ .|+.|. ...|-|- .|. +..+|+.+.++.+++.+.+....
T Consensus 12 ~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 12 PEKLEIVKKALSD-AGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GGGHHHHHHHHHH-TTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH-CCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3467777777765 677653 4444442 222 67888899999999999998764
No 33
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=25.62 E-value=1.6e+02 Score=21.86 Aligned_cols=53 Identities=28% Similarity=0.295 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHhcCCCeeE---EEccCCccc-----------eeEEEeccccHHHHHHHHHHHhHh
Q 028349 130 GSEPLIQLNEILQRAPGVFGA---RFSGAGFRG-----------CCLALVDADRAEEAASYVRSEYFE 183 (210)
Q Consensus 130 S~pelD~Lve~A~~~~Ga~Ga---RmtGgGfGG-----------cvIaLv~~~~~~~~~~~l~~~y~~ 183 (210)
..+.+|.+.+.+.+ .|+-|. .+.|-|-.+ -+..+++++.++.+++.+.+....
T Consensus 33 r~~k~e~V~~aL~~-~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 33 ESLLEKRLVEEVKR-LGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp EGGGHHHHHHHHHH-TTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHh-CCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 34577888888875 676553 444444321 467778888999999999975543
No 34
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=25.58 E-value=1.7e+02 Score=21.87 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhcCCCeeEEEccCCccc-----eeEEEeccccHHHHHHHHHHHhHhh
Q 028349 132 EPLIQLNEILQRAPGVFGARFSGAGFRG-----CCLALVDADRAEEAASYVRSEYFEL 184 (210)
Q Consensus 132 pelD~Lve~A~~~~Ga~GaRmtGgGfGG-----cvIaLv~~~~~~~~~~~l~~~y~~~ 184 (210)
..+|.+.+...+ .|..|-+++-.|++| .+...|+.+.++++++.+.+.-..+
T Consensus 16 ~kld~V~~AL~~-~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 16 KDANYLSDQFID-QNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHH-CCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 356776666554 788887665443222 3455567789999999999877755
No 35
>2jmp_A Chromosomal replication initiator protein DNAA; N-terminal, domain, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium}
Probab=23.03 E-value=29 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=13.6
Q ss_pred cCCccceeEEEeccccHHHHHHHHHHHhHhh
Q 028349 154 GAGFRGCCLALVDADRAEEAASYVRSEYFEL 184 (210)
Q Consensus 154 GgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~ 184 (210)
|||+|| -++...|...+.+.|.+.
T Consensus 2 gggggg-------meqfnafksllkkhyekt 25 (107)
T 2jmp_A 2 GGGGGG-------MEQFNAFKSLLKKHYEKT 25 (107)
T ss_dssp -------------CHHHHHHHHHHHHHTSSC
T ss_pred CCCcch-------HHHHHHHHHHHHHHHHHh
Confidence 556565 467778888888888753
Done!