RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028349
(210 letters)
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 237 bits (606), Expect = 3e-77
Identities = 107/177 (60%), Positives = 122/177 (68%), Gaps = 33/177 (18%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLW 93
VE EVYEAHK +LE LA+RAEHYF+EN RV KG
Sbjct: 280 VEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKG-------------------------- 313
Query: 94 IYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 153
+EAW SGN ++FGKLISASGLSSI NYECG EPLIQL EIL +APGV+GARFS
Sbjct: 314 -------VEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFS 366
Query: 154 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
GAGFRGCC+A VDA+ AEEAAS+VR EY + QPELAS +N D VLIC+ GDCARV+
Sbjct: 367 GAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 88.1 bits (219), Expect = 1e-20
Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 42/179 (23%)
Query: 34 VEEEVYEAHKNELE--PTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFIN 91
V +E + A + E+E P +A+RA H TEN+RV +
Sbjct: 251 VTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAA----------------------- 287
Query: 92 LWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGAR 151
+A +SG+ +FG+L++ S S +YE L L EI A G +GAR
Sbjct: 288 ----------KALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGAR 337
Query: 152 FSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
+GAGF GC +ALV D E A V EY ++ A A + + A V
Sbjct: 338 MTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVTGLKA-------AFYVVEASQGAGVC 389
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 70.3 bits (173), Expect = 2e-14
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 34 VEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINL 92
+ EE ++ + ++ TL KRA H TEN+R K +
Sbjct: 250 LTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAV------------------------ 285
Query: 93 WIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARF 152
+A K+G+ + FG+L++AS +S +YE L L E + GV GAR
Sbjct: 286 ---------KALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARM 336
Query: 153 SGAGFRGCCLALVDADRAEEAASYVRSEYFE 183
+GAGF GC +A+V D+ E V Y E
Sbjct: 337 TGAGFGGCAIAIVKKDKVEAFKENVGKAYEE 367
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 69.1 bits (169), Expect = 6e-14
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 38/174 (21%)
Query: 31 FQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFI 90
F Y A ++ P + +RA+H +EN RV K
Sbjct: 247 FMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKA----------------------- 283
Query: 91 NLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGA 150
++A K + + FG L++ S S +YEC + +L G G+
Sbjct: 284 ----------VKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGS 333
Query: 151 RFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG 204
R +GAGF GC + LV + ++ V +Y + + L V++ KPG
Sbjct: 334 RMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK-----TGLELTFYVIVSKPG 382
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 61.6 bits (150), Expect = 2e-11
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 38/147 (25%)
Query: 37 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYF 96
EV E ++L P L KRA + EN RV K
Sbjct: 218 EVTEEDLSKLPPLLRKRAGYVLRENERVLKVRD--------------------------- 250
Query: 97 IGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAP--GVFGARFSG 154
A K G+ + G+L++ S NYE E +L+ ++ A G +GAR +G
Sbjct: 251 ------ALKEGDIETLGELLTESHWDLADNYEVSCE---ELDFFVEFALELGAYGARLTG 301
Query: 155 AGFRGCCLALVDADRAEEAASYVRSEY 181
AGF G +ALVD + E + EY
Sbjct: 302 AGFGGSAIALVDKGKFESIGEELLEEY 328
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 57.6 bits (139), Expect = 6e-10
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 34/134 (25%)
Query: 47 EPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKS 106
+P A+RA H TEN+RV A A
Sbjct: 240 DPIDARRARHVLTENQRVLDFAA---------------------------------ALAD 266
Query: 107 GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 166
+ G+L++AS S ++E +E + + + RA G GAR +G GF GC +ALV
Sbjct: 267 SDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVRA-GALGARMTGGGFGGCVIALVP 325
Query: 167 ADRAEEAASYVRSE 180
ADRAE+ A VR
Sbjct: 326 ADRAEDVADTVRRA 339
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 54.2 bits (131), Expect = 7e-09
Identities = 46/178 (25%), Positives = 65/178 (36%), Gaps = 41/178 (23%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLW 93
V E + A EL+P +AKRA H TEN R LE
Sbjct: 245 VTLEQFNAVAAELDPVVAKRARHVITENART--------------LE------------- 277
Query: 94 IYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFG-ARF 152
A +G+ + G+L++ S S ++E + L EI++ G G R
Sbjct: 278 ------AASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRM 331
Query: 153 SGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
+G GF GC +ALV + E V +Y + L V CK A
Sbjct: 332 TGGGFGGCIVALVPEELVEAVRQAVAEQYEA-----KTGLKETFYV--CKASQGAGQC 382
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 45.9 bits (109), Expect = 6e-06
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 50 LAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNS 109
L +RA H ++E +RV H + +L S E K
Sbjct: 361 LHQRAVHVYSEAKRV-----------------HAFRDTVSSSL------SEEEKLKK--- 394
Query: 110 QDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR 169
G L++ S S YEC L +L ++ R G GAR +GAG+ GC +ALV
Sbjct: 395 --LGDLMNESHYSCSVLYECSCPELEELVKVC-RDNGALGARLTGAGWGGCAVALVKEAI 451
Query: 170 AEEAASYVRSEYF 182
+ ++ +++
Sbjct: 452 VPQFILALKEKFY 464
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 39.0 bits (91), Expect = 1e-04
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 101 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEP--LIQLNEILQRAPGVFGARFSGAGFR 158
LEA + G+ + G+L++ + LS G L +L E L+ G GA+ SG+G
Sbjct: 2 LEALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELREL-GALGAKLSGSGGG 60
Query: 159 GCCLALV-DADRAEEAASYVRSEY 181
AL D + AEE A +R Y
Sbjct: 61 PTVFALFKDEEDAEEVAEALREAY 84
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 35.0 bits (81), Expect = 0.019
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 143 RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 174
R G GA+ +GAG GC +AL ++ E A
Sbjct: 245 RTAGALGAKITGAGGGGCMVALAAPEKQSEVA 276
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 32.5 bits (74), Expect = 0.16
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 131 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 181
+ L ++E++ GV G R G GF GC + L+ + + ++VR ++
Sbjct: 384 TPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 30.4 bits (69), Expect = 0.60
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 107 GNSQDFGKLIS-ASGLSS---IYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCL 162
G+ ++ G+L++ GL + E L +L E + G GA+ +GAG GC +
Sbjct: 223 GDFEELGELMNINQGLLKALGVSTPE-----LDELVEAARSL-GALGAKLTGAGGGGCII 276
Query: 163 ALV-DADRAEE 172
AL + + AE
Sbjct: 277 ALAKNEEIAET 287
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 30.1 bits (68), Expect = 0.94
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 149 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSA 197
++ SGAG+ G L D R + + + + Q A+ LN+D++
Sbjct: 44 ASQQSGAGYIGTGTTLADVRR-------IYNSFLDTQLRTATSLNSDAS 85
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 29.1 bits (65), Expect = 1.8
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 97 IGSGLEAWKSGNSQDFGKLISAS-GLSSIYNYECGSEPLIQLNEILQ--RAPGVFGARFS 153
+ EA + GN G+L++A+ L C +L+ I+Q R G GA+ S
Sbjct: 227 VSEAKEALQKGNLFRVGELMNANHDLCQKLTVSCR-----ELDSIVQTCRTYGALGAKMS 281
Query: 154 GAGFRGCCLALVDADRAEEAA 174
G G G +AL A + A
Sbjct: 282 GTGRGGLVVALA-ASEDQRDA 301
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 28.5 bits (64), Expect = 1.9
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 115 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 159
L++ L S SE +Q LQRA + AGFR
Sbjct: 26 LLAFRFLDSAQRSNQASEARLQREAELQRAMALLERDLRRAGFRR 70
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 27.2 bits (61), Expect = 2.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 157 FRGCCLALVDAD---RAEEAASYVRSEYFELQ 185
F G +A V AD A +AA V+ EY EL
Sbjct: 80 FVGQPIAAVVADDEETARDAAELVKVEYEELP 111
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 28.4 bits (64), Expect = 3.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 42 HKNELEPTLAKRAEHYF 58
HKNE+ P + A+ Y
Sbjct: 232 HKNEIAPAVFAAADLYV 248
>gnl|CDD|214346 CHL00045, ccsA, cytochrome c biogenesis protein.
Length = 319
Score = 27.9 bits (63), Expect = 3.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 70 FLTWSFEIILEIHVYLVLCFINLWIYFIGS 99
FL+WS II ++V F +G+
Sbjct: 77 FLSWSLSII-----HIVPYFKKKKNRLLGA 101
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 27.9 bits (63), Expect = 3.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 139 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 174
L+ PG AR SG+G C AL + A EAA
Sbjct: 238 AALRAQPGALLARMSGSG--ATCFALFADEAAAEAA 271
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srd is part
of the larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 27.5 bits (62), Expect = 4.9
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 9 EYFHLILFSSFVILQLIMI-LIFFQT 33
++ I F +IL L+++ LI F++
Sbjct: 2 SIYYPIFFILGLILNLLLLYLIIFKS 27
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 27.3 bits (61), Expect = 5.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 115 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 154
L+ A + Y Y+C ++ E L APGV+ AR++G
Sbjct: 50 LLKAEYVYKKYGYDCFADDTGLEVEALNGAPGVYSARYAG 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.429
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,904,495
Number of extensions: 1026535
Number of successful extensions: 1486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1481
Number of HSP's successfully gapped: 49
Length of query: 210
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 117
Effective length of database: 6,812,680
Effective search space: 797083560
Effective search space used: 797083560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)