RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028349
(210 letters)
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 127 bits (322), Expect = 2e-35
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 44/177 (24%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLW 93
V+ E EA ++ + +RA H E RR A+
Sbjct: 265 VQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAA------------------------- 299
Query: 94 IYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 153
A + G+ + FG+L+ S S +YE L QL E PGV+G+R +
Sbjct: 300 --------AALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMT 351
Query: 154 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
G GF GC + L++A A A +++ Y + + + D A+V+
Sbjct: 352 GGGFGGCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 397
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 126 bits (319), Expect = 6e-35
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 41/178 (23%)
Query: 34 VEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINL 92
+ E ++A+ + + + TL KRA H EN R
Sbjct: 279 LSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQ------------------------ 314
Query: 93 WIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARF 152
+A+ +GN FG+L++AS S +YE L L E Q+ GV GAR
Sbjct: 315 ---------KAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARM 365
Query: 153 SGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
+GAGF GC +ALV D V Y E + ++ + + G + +
Sbjct: 366 TGAGFGGCAIALVAHDNVSAFRKAVGQVYEE-------VVGYPASFYVAQIGSGSTKL 416
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 122 bits (308), Expect = 8e-34
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 41/174 (23%)
Query: 36 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIY 95
+EV E ++L P K + EN RV +
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVR--------------------------- 250
Query: 96 FIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 155
+A K GN ++ GK+++ + NYE + L E G +GAR +GA
Sbjct: 251 ------DALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERA-LKLGAYGARLTGA 303
Query: 156 GFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 209
GF G +ALVD + AE + EY + P A I +P D +
Sbjct: 304 GFGGSAIALVDKEDAETIGEEILREYLKRFPWKAR-------HFIVEPSDGVGI 350
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 90.3 bits (224), Expect = 2e-21
Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 35 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWI 94
+ + ++ L L +RA+H ++E RV +
Sbjct: 333 TQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKIC----------------------- 369
Query: 95 YFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 154
E Q G+L++ S +S YEC L QL +I R G G+R +G
Sbjct: 370 -------EEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDIC-RKFGAQGSRLTG 421
Query: 155 AGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
AG+ GC +++V AD+ + V Y++ + ++ KPG A V+
Sbjct: 422 AGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAPEKQ--SLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 80.2 bits (197), Expect = 7e-18
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 30/174 (17%)
Query: 40 EAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGS 99
L +RA+H ++E+ RV K + +T S
Sbjct: 372 TFPVRFQVLKLYQRAKHVYSESLRVLKALKMMT--------------------------S 405
Query: 100 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 159
DFG+L++ S S YEC Q+ I A G FG+R +GAG+ G
Sbjct: 406 ATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIA-LANGSFGSRLTGAGWGG 464
Query: 160 CCLALVDA---DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
C + LV + E+ + +++ ++ + A+++ KP +
Sbjct: 465 CTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLY 518
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 63.5 bits (155), Expect = 3e-12
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 42/134 (31%)
Query: 52 KRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQD 111
+ + F E +V EA K N +D
Sbjct: 216 ENKDEIFKEIDKVID-----------------------------------EALKIKNKED 240
Query: 112 FGKLISAS--GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR 169
FGKL++ + L + L ++ +I FGA+ +GAG GC + LV+ ++
Sbjct: 241 FGKLMTKNHELLKK---LNISTPKLDRIVDIGN--RFGFGAKLTGAGGGGCVIILVNEEK 295
Query: 170 AEEAASYVRSEYFE 183
+E + E
Sbjct: 296 EKELLKELNKEDVR 309
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 58.2 bits (141), Expect = 2e-10
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 100 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 159
A +++ G+++S + + S L E + G GA+ SG G G
Sbjct: 203 AEIAISQKDAEGLGQILSQAH-LHLKEIGVSSLEADSLVETA-LSHGALGAKMSGGGLGG 260
Query: 160 CCLALV-DADRAEEAASYVRSEYFE 183
C +ALV + A+E A + +
Sbjct: 261 CIIALVTNLTHAQELAERLEEKGAV 285
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 57.4 bits (139), Expect = 4e-10
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 100 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 159
EA + G+ Q G+L++A+ + L + + R G GA+ SG G G
Sbjct: 233 AREALQKGDLQRLGQLMNANH-DLCRQIDVSCRELESIVQTC-RTYGALGAKLSGTGRGG 290
Query: 160 CCLALVDA-DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 209
+AL + D+ + ++++ E +P + +
Sbjct: 291 IAVALAASSDQRDAIVKGLKAKCPE---------AKFIWRYTVQPSAASNL 332
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 51.8 bits (124), Expect = 3e-08
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 102 EAWKSGNSQDFGKLISAS-GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGC 160
A G+ +F +++ + + + ++ G + SGAG G
Sbjct: 244 LALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVA-TGAGAMAGKVSGAGGGGF 302
Query: 161 CLALVDADRAEEAASYVRSEYFELQP 186
+ +V+ R EE + + + P
Sbjct: 303 IMFVVEPTRKEEVVRALNNLNGFVMP 328
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 49.3 bits (118), Expect = 2e-07
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 100 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 159
+ + + + + + + + + QL +I + G + +GAG G
Sbjct: 217 ASDVIEHHKFEALADIFNECH-ADLKALTVSHDKIEQLMKIG-KENGAIAGKLTGAGRGG 274
Query: 160 CCLALV-DADRAEEAASYVRSEYFE 183
L L D A+ V
Sbjct: 275 SMLLLAKDLPTAKNIVKAVEKAGAA 299
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 39.2 bits (91), Expect = 4e-04
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 99 SGLEAWKSGNSQDFGKLISA-----SGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 153
++A+ + + + I L + + L +L + + G + S
Sbjct: 257 QIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGG--AGKSS 314
Query: 154 GAGFRGCCLALVDADRAEEA 173
G+G C +A E
Sbjct: 315 GSGGGDCGIAFSKTKELAEK 334
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 38.3 bits (88), Expect = 0.001
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 97 IGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAG 156
+G A +L+ + + G L QL ++ ++ +GAG
Sbjct: 279 LGEMAAAPVPEQYLVLEELMDMNQ-HHLNALGVGHASLDQLCQVTAAH--GLHSKLTGAG 335
Query: 157 FRGCCLALVDADRAEEAASYVRSEY 181
GC + L+ +
Sbjct: 336 GGGCGITLLKPGLERAKVEAAKQAL 360
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 78/233 (33%)
Query: 26 MILIF---------FQTVEE--EVYEAHKNELEP-------TLAKRAEHYFTENRRVAKG 67
++ IF F EE ++Y+ + + TL++ + +G
Sbjct: 156 LVAIFGGQGNTDDYF---EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 68 IAFLTW------------------SFEII--LEIHVYLVLCFI------NLWIYFIGSGL 101
+ L W S +I +++ Y+V + L Y G+
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-- 270
Query: 102 EAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-F--GARFSGAGFR 158
+G+SQ L++A ++ S +++A V F G R A +
Sbjct: 271 ----TGHSQG---LVTAVAIAE-----TDSWE--SFFVSVRKAITVLFFIGVRCYEA-YP 315
Query: 159 GCCL---ALVDA-DRAEEAASY---VRSEYFE-LQPELA---SQLNADSAVLI 200
L L D+ + E S + + E +Q + S L A V I
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 34.2 bits (78), Expect = 0.023
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 100 GLEAWKSGNSQDFGKLIS-ASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 158
+EA + G S+ + + AS L + + + L QL E Q V A+ SGAG
Sbjct: 241 LVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV--AKSSGAGGG 298
Query: 159 GCCLALVDADRAEEA 173
C +AL ++ +
Sbjct: 299 DCGIALSFDAQSTKT 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.27
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 110 QDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 142
Q KL +S+ Y S P + + ++
Sbjct: 20 QALKKL-----QASLKLYADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.29
Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 52/209 (24%)
Query: 9 EYFHL---ILFSS---FVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENR 62
F+L IL ++ V L +++ +E++ L K + +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 63 RVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYF-----------IGSGLEAWKSGNSQD 111
R S II E + + W + I S L + +
Sbjct: 320 REVLTTNPRRLS--IIAE----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 112 -FGKL--------ISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCL 162
F +L I LS I+ S+ ++ +N++ +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------------------- 414
Query: 163 ALVDADRAEEAASYVRSEYFELQPELASQ 191
+LV+ +E+ + S Y EL+ +L ++
Sbjct: 415 SLVEKQP-KESTISIPSIYLELKVKLENE 442
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 4.5
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 35 EEEVYEAHKNELEPTLAKRAEH---YFTENRRVAKGIAFL 71
E+E E K +LE +++E NR K AF
Sbjct: 109 EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK--AFY 146
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 26.5 bits (59), Expect = 6.3
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 39 YEAHKNELEPTLAKRAEHYFTENR 62
H EL+ +RA E R
Sbjct: 215 SLPHTRELDDEALRRARAVVVEWR 238
>2f6s_A Cell filamentation protein, putative; structural PSI, protein
structure initiative, midwest center for struc
genomics, MCSG; 2.50A {Helicobacter pylori} SCOP:
a.265.1.1
Length = 201
Score = 26.3 bits (57), Expect = 7.2
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 33 TVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYL 85
+ E +Y L+ ++A+H + + + + EIH +L
Sbjct: 12 SGRENLYFQGHMHLDRQSLEKAKHLIQSGLIDTIEV----GTIKGLQEIHRFL 60
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 26.0 bits (58), Expect = 7.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 150 ARFSGAGFRGCCLALVDADRAEEAAS 175
+ G G A+ D D + A
Sbjct: 181 MATNRHGLAGSFAAVRDTDLRAQLAR 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.429
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,249,261
Number of extensions: 185862
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 35
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.6 bits)