RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 028349
(210 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 88.6 bits (219), Expect = 9e-23
Identities = 45/176 (25%), Positives = 63/176 (35%), Gaps = 40/176 (22%)
Query: 35 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWI 94
EE + TL KRA H EN R
Sbjct: 48 NEEFDANTDLIGDETLIKRARHAVYENNRTKIAQ-------------------------- 81
Query: 95 YFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 154
+A+ +GN FG+L++AS S +YE L L E Q+ GV GAR +G
Sbjct: 82 -------KAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTG 134
Query: 155 AGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
AGF GC +ALV D V Y E + ++ + + G + +
Sbjct: 135 AGFGGCAIALVAHDNVSAFRKAVGQVYEE-------VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 81.3 bits (200), Expect = 5e-20
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 44/177 (24%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLW 93
V+ E EA ++ + +RA H E RR A+
Sbjct: 42 VQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAA------------------------- 76
Query: 94 IYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 153
A + G+ + FG+L+ S S +YE L QL E PGV+G+R +
Sbjct: 77 --------AALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMT 128
Query: 154 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
G GF GC + L++A A A +++ Y + + + D A+V+
Sbjct: 129 GGGFGGCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 174
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 76.3 bits (187), Expect = 4e-18
Identities = 39/179 (21%), Positives = 61/179 (34%), Gaps = 41/179 (22%)
Query: 29 IFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLC 88
I + +EV E +L P K + EN RV +
Sbjct: 33 ILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDA------------------ 74
Query: 89 FINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVF 148
K G+ + GK+++ + NY E L + G +
Sbjct: 75 ---------------LKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKA-MELGAY 118
Query: 149 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCA 207
GAR +GAGF G +ALVD D+A+ + EY + + + + KP D
Sbjct: 119 GARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA-------KFSWKAKYFVVKPSDGV 170
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 54.6 bits (131), Expect = 2e-10
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 102 EAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCC 161
EA K N +DFGKL++ + + + L ++ +I R FGA+ +GAG GC
Sbjct: 51 EALKIKNKEDFGKLMTKNH-ELLKKLNISTPKLDRIVDIGNRF--GFGAKLTGAGGGGCV 107
Query: 162 LALVDADRAEEAASYVRSEYFE 183
+ LV+ ++ +E + E
Sbjct: 108 IILVNEEKEKELLKELNKEDVR 129
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 43.8 bits (103), Expect = 3e-06
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 102 EAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCC 161
A +L+ + + G L QL ++ ++ +GAG GC
Sbjct: 59 AAPVPEQYLVLEELMDMNQ-HHLNALGVGHASLDQLCQVTAAH--GLHSKLTGAGGGGCG 115
Query: 162 LALVDADRAEEAASYVRSEY 181
+ L+ +
Sbjct: 116 ITLLKPGLERAKVEAAKQAL 135
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 29.3 bits (65), Expect = 0.36
Identities = 32/184 (17%), Positives = 53/184 (28%), Gaps = 16/184 (8%)
Query: 36 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIY 95
VY A K L P L AE+Y + A + +++ + + NL
Sbjct: 55 GFVYIAGKCGLVPVL---AENYNKSDNCEDTPEAG--YFAVAVVKKSASDLT-WDNLKGK 108
Query: 96 FIGSGLEAWKSGNSQDFGKLISASGLSSIYNY-----ECGSEPLIQLNEILQRAPGVFGA 150
+G + G L + + GS+ L ++ +
Sbjct: 109 KSCHTAVGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGSGLNLCE 168
Query: 151 RFSGAGFRGCCLALVDADRAEEAA----SYVRSEYFELQPE-LASQLNADSAVLICKPGD 205
+ G+ G A + A V P+ A LN L+C G
Sbjct: 169 PNNKEGYYGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGT 228
Query: 206 CARV 209
V
Sbjct: 229 RKPV 232
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 26.9 bits (58), Expect = 2.1
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 148 FGARFSGAGFRGCCLALVDADRAEEAASY-VRSEYFELQPE 187
F S G + R ++A++ +R Y+++ E
Sbjct: 264 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 304
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia
coli [TaxId: 562]}
Length = 714
Score = 26.9 bits (57), Expect = 2.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 137 LNEILQRAPGVFGARFSGAGFRG 159
+++I++ PGV S +G RG
Sbjct: 35 VSKIIRTMPGVNLTGNSTSGQRG 57
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 26.9 bits (57), Expect = 2.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 137 LNEILQRAPGVFGARFSGAGFRG 159
+ E+L R PGV +G G
Sbjct: 40 MREVLNRIPGVSAPENNGTGSHD 62
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 25.6 bits (54), Expect = 5.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 137 LNEILQRAPGVFGARFSGAG 156
+N++L+R PGV + G+G
Sbjct: 39 VNDVLRRLPGVDITQNGGSG 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.429
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 790,263
Number of extensions: 34404
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 14
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)