BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028350
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
           Placental Lactogen And The Extracellular Domain Of The
           Rat Prolactin Receptor
          Length = 199

 Score = 30.0 bits (66), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 14  ISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTL 61
           IS LH+W +  HHA  T  +N+KGT+          K QE ++ A+ L
Sbjct: 87  ISLLHSWDEPLHHA-VTELANSKGTSP-----ALLTKAQEIKEKAKVL 128


>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
           Desulfovibrio Fructosovorans
          Length = 564

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 105 LRVYTDELNKFEISIPQDWQLGAGEPNGFKS 135
           +R+   +++ F++ +P  W LG   P G KS
Sbjct: 483 IRIKGKKIDNFQLVVPSTWNLGPRGPQGDKS 513


>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
           2,4- Dienoyl Coa Reductase
          Length = 671

 Score = 28.5 bits (62), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 130 PNGFKSITAFYPQEASSSSVSVVITGLGPDFT 161
           P+G + + AFY + A      +V  G+ PD T
Sbjct: 33  PDGAERLAAFYAERARHGVALIVSGGIAPDLT 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.130    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,061,682
Number of Sequences: 62578
Number of extensions: 232423
Number of successful extensions: 729
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)