BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028350
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
           thaliana GN=PPD3 PE=1 SV=2
          Length = 247

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 114/149 (76%), Gaps = 4/149 (2%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELN 113
           D+    + RI  +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE N
Sbjct: 38  DSSNEEQHRISSRDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETN 96

Query: 114 KFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFA 173
           KFEISIPQDWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA
Sbjct: 97  KFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFA 156

Query: 174 DTLVSGLDRSWRRPPGVAAKLIDCKASKG 202
           +TLVSGLDRSW++P GV AKLID +ASKG
Sbjct: 157 ETLVSGLDRSWQKPVGVTAKLIDSRASKG 185


>sp|P82681|TL13_SPIOL Thylakoid lumenal 13.8 kDa protein (Fragment) OS=Spinacia oleracea
           PE=1 SV=1
          Length = 21

 Score = 32.0 bits (71), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 18/20 (90%)

Query: 103 EDLRVYTDELNKFEISIPQD 122
           ++ RVY+D+ NK++ISIPQD
Sbjct: 2   DEFRVYSDDANKYKISIPQD 21


>sp|A1AV71|DXR_RUTMC 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ruthia magnifica
           subsp. Calyptogena magnifica GN=dxr PE=3 SV=1
          Length = 383

 Score = 31.6 bits (70), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 107 VYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESF 166
           +++D+ N F +S   +WQL     N ++   A    E+S+  +S +IT      +  ++ 
Sbjct: 23  LHSDKFNIFTLSANTNWQLMLELCNKYQPNYAIMVDESSAEKLSTIITTDTQILSGTQAL 82

Query: 167 GKVEAFADT 175
            KV A  DT
Sbjct: 83  DKVVAHQDT 91


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.130    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,991,641
Number of Sequences: 539616
Number of extensions: 2948700
Number of successful extensions: 6865
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6860
Number of HSP's gapped (non-prelim): 7
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)