Query 028350
Match_columns 210
No_of_seqs 88 out of 90
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 99.8 2.9E-20 9.9E-25 149.0 10.9 101 100-208 3-108 (165)
2 2lnj_A SLL1418 protein, putati 99.7 2.4E-21 8.1E-26 157.4 0.0 103 99-208 8-117 (170)
3 1v2b_A 23-kDa polypeptide of p 99.8 1E-19 3.4E-24 150.6 9.3 102 102-209 6-122 (177)
4 3hlz_A Uncharacterized protein 66.6 8.7 0.0003 34.0 5.5 43 106-153 5-48 (269)
5 1tu1_A Hypothetical protein PA 65.2 18 0.00063 27.8 6.6 61 104-180 2-64 (148)
6 3lyd_A Uncharacterized protein 63.6 23 0.00078 28.8 7.1 74 113-202 18-94 (161)
7 1q90_R Cytochrome B6-F complex 27.3 29 0.00099 23.3 1.7 16 74-89 8-23 (49)
8 3koj_A Uncharacterized protein 23.7 39 0.0013 25.4 2.1 46 134-179 23-73 (108)
9 2dnf_A Doublecortin domain-con 21.6 2.5E+02 0.0087 20.8 7.2 64 119-198 3-67 (108)
10 2pq4_B Periplasmic nitrate red 13.9 71 0.0024 19.8 1.3 13 75-87 3-15 (35)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.83 E-value=2.9e-20 Score=148.96 Aligned_cols=101 Identities=22% Similarity=0.386 Sum_probs=85.0
Q ss_pred hhccCceeeeeCCCceEEEcCCCCcCCCCCCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHHhhc
Q 028350 100 AANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG 179 (210)
Q Consensus 100 AA~~gF~~Y~D~~dGFsf~yPs~W~~~~ge~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~LV~~ 179 (210)
++++||++|.|+++||+|.||++|+..... .| ..++|.|+++...||+|+|+|++ ++++|++||+|+++++.|++.
T Consensus 3 ~~~~g~~~~~D~~~gysf~~P~~W~~~~~~-~g--~~v~f~d~~~~~~~v~V~v~p~~-~~~~l~~~G~~e~va~~l~~~ 78 (165)
T 2xb3_A 3 SATSGLQAYVDSYDGYEFLYPRGWVQVQVE-DP--VDVVFHDIIETTENVSVVVNTVA-STKSLEELGSPEEVGDRLLRN 78 (165)
T ss_dssp ---CCEEEEEETTTTEEEEEETTEEEECCC-TT--EEEEEEESSCTTSEEEEEEEECS-SCCCSGGGCCHHHHHHHHHHH
T ss_pred CCCCCceEEEcCCCCEEEEcCCCCeEecCC-CC--ceEEEECcccCCceEEEEEecCC-CCCChHHcCCHHHHHHHHHHH
Confidence 457999999999999999999999987641 25 78999999999999999999985 467999999999999999998
Q ss_pred ccCCCCCCC--CCceEEEeceec--CC-cEEEEe
Q 028350 180 LDRSWRRPP--GVAAKLIDCKAS--KG-ICIFFS 208 (210)
Q Consensus 180 vdrs~~rpP--~q~akLiDa~~r--~g-~YY~~~ 208 (210)
. .++| ++.++||++.++ +| .||.|.
T Consensus 79 ~----~~~~~~~~~~~l~~a~~r~~~G~~yY~~E 108 (165)
T 2xb3_A 79 I----IAPSESGRSSALIAATSQKADDKTYYILE 108 (165)
T ss_dssp T----TSCTTSSCEEEEEEEEEEEETTEEEEEEE
T ss_pred h----hcCCCCCcceEEEEeeeeecCCceEEEEE
Confidence 6 4555 689999999997 45 588754
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.69 E-value=2.4e-21 Score=157.37 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=87.3
Q ss_pred hhhccCceeeeeCCCceEEEcCCCCcCCCCC--CCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHH
Q 028350 99 LAANEDLRVYTDELNKFEISIPQDWQLGAGE--PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTL 176 (210)
Q Consensus 99 ~AA~~gF~~Y~D~~dGFsf~yPs~W~~~~ge--~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~L 176 (210)
.+++.||++|+|+.|||+|.||++|++.+.. ..| .+++|+|+.+...||+|+|+|++.+ ++|++||+|++|++.|
T Consensus 8 ~~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g--~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l 84 (170)
T 2lnj_A 8 GVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPG--VDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRF 84 (170)
Confidence 3457999999999999999999999976542 235 7899999999999999999997543 7999999999999999
Q ss_pred hhcccCCCCCCC--CCceEEEeceecC--C-cEEEEe
Q 028350 177 VSGLDRSWRRPP--GVAAKLIDCKASK--G-ICIFFS 208 (210)
Q Consensus 177 V~~vdrs~~rpP--~q~akLiDa~~r~--g-~YY~~~ 208 (210)
++.+ .++| +..++||++.+++ | .||.|.
T Consensus 85 ~~~~----~~~~~~~~~a~li~a~~~~~~G~~yY~~E 117 (170)
T 2lnj_A 85 MKTV----NDASQGDRQAELINAEARDEDGQVYYTLE 117 (170)
Confidence 9987 4555 7999999999983 5 488753
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.80 E-value=1e-19 Score=150.60 Aligned_cols=102 Identities=25% Similarity=0.387 Sum_probs=81.5
Q ss_pred ccCceeeeeCCCceEEEcCCCCcCCCC-CCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHHhhcc
Q 028350 102 NEDLRVYTDELNKFEISIPQDWQLGAG-EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 180 (210)
Q Consensus 102 ~~gF~~Y~D~~dGFsf~yPs~W~~~~g-e~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~LV~~v 180 (210)
++||++|. +|||+|+||++|++..+ ..+| ..++|+++.+.+.||+|+|+|+ ++++|++||+|++|++.|...|
T Consensus 6 ~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~--~~~si~dlGspe~~~~~v~~~l 79 (177)
T 1v2b_A 6 DTDFQTYN--GDGFKLQIPSKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLL 79 (177)
T ss_dssp -CCEEEEE--CSSEEEEEETTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC
T ss_pred CCCceEEe--cCCEEEEcCCCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCC--CCCChhHCCCHHHHHHHHHHHH
Confidence 68999999 99999999999998765 4677 8999999999999999999995 6789999999999999988887
Q ss_pred cCCCCCC-----C----C--CceEEEeceec--CC-cEEEEee
Q 028350 181 DRSWRRP-----P----G--VAAKLIDCKAS--KG-ICIFFSI 209 (210)
Q Consensus 181 drs~~rp-----P----~--q~akLiDa~~r--~g-~YY~~~~ 209 (210)
.+.+..| + + ..++||++.++ +| .||.|.+
T Consensus 80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~ 122 (177)
T 1v2b_A 80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI 122 (177)
T ss_dssp ------------------CCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEE
Confidence 7665553 2 2 66999999998 56 5888653
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=66.62 E-value=8.7 Score=34.04 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=30.4
Q ss_pred eeeeeCCCceEEEcCCCCcCCC-CCCCCcceeEEecCCCCCCcceEEEE
Q 028350 106 RVYTDELNKFEISIPQDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVI 153 (210)
Q Consensus 106 ~~Y~D~~dGFsf~yPs~W~~~~-ge~sG~K~V~af~p~~~~~sNVsVii 153 (210)
.-|..++-=|++.||++|+..+ |+ | .-+ ||.|..=+-|.++..
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E--~--sfl-Fynp~~WtGNfRISa 48 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGE--G--SFL-FYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCT--T--EEE-EECSSSCCCEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCC--C--cee-eeChhhcccceEEEe
Confidence 4577788889999999999885 34 3 455 454444567777664
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=65.18 E-value=18 Score=27.80 Aligned_cols=61 Identities=16% Similarity=0.348 Sum_probs=36.8
Q ss_pred CceeeeeCCCceEEEcCCCCcCCCCCCCCcceeEEecCCCCCC--cceEEEEecCCCCcccccccCCHHHHHHHHhhcc
Q 028350 104 DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 180 (210)
Q Consensus 104 gF~~Y~D~~dGFsf~yPs~W~~~~ge~sG~K~V~af~p~~~~~--sNVsViiTpi~tDftsI~sFGspeefae~LV~~v 180 (210)
..+.|. =+.|+|.+|.+|+... - .|+.. |+.... .|+.|..++++.+ .+++++.+.-++.+
T Consensus 2 ~m~~y~--~~Egsl~lP~gw~D~t----~--nv~~~-~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l 64 (148)
T 1tu1_A 2 HMTLYR--LHEADLEIPDAWQDQS----I--NIFKL-PASGPAREASFVISRDASQGD-------APFADYVARQLENA 64 (148)
T ss_dssp CEEEEE--CSSEEEEEETTSEECC----B--EEEEE-CCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHH
T ss_pred CCceEE--ECCEEEeCCCCcEeee----E--EEEEc-CCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHH
Confidence 456787 8899999999999221 1 34433 332222 5777766666544 35666665554443
No 6
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=63.64 E-value=23 Score=28.83 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=43.2
Q ss_pred CceEEEcCCCCcCCCCCCCCcceeEEecCCC---CCCcceEEEEecCCCCcccccccCCHHHHHHHHhhcccCCCCCCCC
Q 028350 113 NKFEISIPQDWQLGAGEPNGFKSITAFYPQE---ASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG 189 (210)
Q Consensus 113 dGFsf~yPs~W~~~~ge~sG~K~V~af~p~~---~~~sNVsViiTpi~tDftsI~sFGspeefae~LV~~vdrs~~rpP~ 189 (210)
-+|++-+|.+|+......+ .++--|.- .=..||-|.+..++.|+ | |+.-..|.+.+ ..-|+
T Consensus 18 p~~~v~~P~gWe~~~~~~~----~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~----~~lp~ 81 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGT----QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRA----TQLPD 81 (161)
T ss_dssp CEEEEECCTTEEECTTSSS----SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHH----TTSTT
T ss_pred ceeeccCCCCceEcCCCCc----eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHH----hhCCC
Confidence 3889999999998854212 23333222 22789999999887774 2 44443443322 11266
Q ss_pred CceEEEeceecCC
Q 028350 190 VAAKLIDCKASKG 202 (210)
Q Consensus 190 q~akLiDa~~r~g 202 (210)
-+-.-.+..+.+|
T Consensus 82 ~~~~~r~~~~~~G 94 (161)
T 3lyd_A 82 YAERGRTETTVDG 94 (161)
T ss_dssp CEEEEEEEEEETT
T ss_pred cEeecccccccCC
Confidence 6554444445555
No 7
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=27.28 E-value=29 Score=23.33 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHhh
Q 028350 74 RTKRREVMFQLAFTAC 89 (210)
Q Consensus 74 ~~~RR~aL~~~a~aa~ 89 (210)
..+||++|..+.+.+.
T Consensus 8 dm~RRqfln~l~~G~~ 23 (49)
T 1q90_R 8 DMNKRNIMNLILAGGA 23 (49)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3899999987776543
No 8
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=23.74 E-value=39 Score=25.44 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=34.2
Q ss_pred ceeEEecCCC-CCCcceEEEEecC----CCCcccccccCCHHHHHHHHhhc
Q 028350 134 KSITAFYPQE-ASSSSVSVVITGL----GPDFTRMESFGKVEAFADTLVSG 179 (210)
Q Consensus 134 K~V~af~p~~-~~~sNVsViiTpi----~tDftsI~sFGspeefae~LV~~ 179 (210)
.+.++|.|++ .+..+.+|.+++. .+||=.+.-||..-|++.+-+++
T Consensus 23 DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~K 73 (108)
T 3koj_A 23 APQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRL 73 (108)
T ss_dssp EEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCT
T ss_pred CCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCC
Confidence 3678999998 6788999998743 35677899999877776664443
No 9
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=21.56 E-value=2.5e+02 Score=20.83 Aligned_cols=64 Identities=6% Similarity=0.044 Sum_probs=41.7
Q ss_pred cCCCCcCCCCCCCCcceeEEecCCCCCCc-ceEEEEecCCCCcccccccCCHHHHHHHHhhcccCCCCCCCCCceEEEec
Q 028350 119 IPQDWQLGAGEPNGFKSITAFYPQEASSS-SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 197 (210)
Q Consensus 119 yPs~W~~~~ge~sG~K~V~af~p~~~~~s-NVsViiTpi~tDftsI~sFGspeefae~LV~~vdrs~~rpP~q~akLiDa 197 (210)
.|+.|+....+ . .++.++=|++... -+.|+|.+ ..+-+.|++++.|=..|. -|-|-.-+|+..
T Consensus 3 ~~~~~~~~~~~---p-k~I~v~rNGD~~~~g~~v~i~~--------~~~~sfe~lL~~lT~~v~----l~~GaVr~Lyt~ 66 (108)
T 2dnf_A 3 SGSSGRKPLQE---P-CTIFLIANGDLINPASRLLIPR--------KTLNQWDHVLQMVTEKIT----LRSGAVHRLYTL 66 (108)
T ss_dssp CCSCSSCCCCC---C-EEEEECBTTCSSSCCEEEEECH--------HHHTCHHHHHHHHHHHCC----CTTSSCCEEEET
T ss_pred CccccCcCCCc---c-eEEEEEeCCCCCCCCEEEEECC--------ccccCHHHHHHHHHHhhC----CCCCCEEEEEcC
Confidence 46677765443 2 3666888998855 48888865 135677899998888873 333445566655
Q ss_pred e
Q 028350 198 K 198 (210)
Q Consensus 198 ~ 198 (210)
.
T Consensus 67 ~ 67 (108)
T 2dnf_A 67 E 67 (108)
T ss_dssp T
T ss_pred C
Confidence 3
No 10
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=13.95 E-value=71 Score=19.84 Aligned_cols=13 Identities=31% Similarity=0.243 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHH
Q 028350 75 TKRREVMFQLAFT 87 (210)
Q Consensus 75 ~~RR~aL~~~a~a 87 (210)
++||.+|-+.+++
T Consensus 3 lsRR~FLK~~aaa 15 (35)
T 2pq4_B 3 LSRRSFMKANAVA 15 (35)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 6799999866554
Done!