Query 028353
Match_columns 210
No_of_seqs 151 out of 1669
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.1E-43 1.1E-47 243.7 20.1 199 9-210 4-204 (205)
2 KOG0080 GTPase Rab18, small G 100.0 1.3E-41 2.9E-46 228.5 18.5 201 9-210 6-207 (209)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 3.9E-40 8.4E-45 228.4 19.4 196 12-210 3-199 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 9.1E-39 2E-43 221.7 19.4 172 9-181 17-189 (221)
5 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.2E-38 4.9E-43 232.6 22.0 195 15-210 1-201 (201)
6 KOG0078 GTP-binding protein SE 100.0 3.9E-38 8.6E-43 222.3 20.7 172 9-182 7-179 (207)
7 PLN03118 Rab family protein; P 100.0 1.4E-37 3E-42 230.0 23.7 210 1-210 1-210 (211)
8 cd04120 Rab12 Rab12 subfamily. 100.0 1.7E-37 3.7E-42 226.7 22.5 194 15-210 1-202 (202)
9 cd04121 Rab40 Rab40 subfamily. 100.0 1E-36 2.3E-41 220.7 21.5 167 11-180 3-170 (189)
10 KOG0394 Ras-related GTPase [Ge 100.0 4E-37 8.7E-42 211.5 16.8 172 10-182 5-183 (210)
11 KOG0098 GTPase Rab2, small G p 100.0 7.3E-37 1.6E-41 210.6 16.8 169 11-181 3-172 (216)
12 cd04110 Rab35 Rab35 subfamily. 100.0 1.6E-35 3.5E-40 217.0 22.8 196 11-210 3-199 (199)
13 PTZ00369 Ras-like protein; Pro 100.0 5.3E-36 1.1E-40 217.9 19.8 182 14-210 5-187 (189)
14 cd04112 Rab26 Rab26 subfamily. 100.0 1.3E-35 2.8E-40 216.3 21.5 189 15-210 1-191 (191)
15 KOG0079 GTP-binding protein H- 100.0 2.6E-37 5.7E-42 205.1 11.3 167 11-180 5-172 (198)
16 cd04126 Rab20 Rab20 subfamily. 100.0 8.8E-36 1.9E-40 220.0 19.9 187 15-210 1-220 (220)
17 cd04144 Ras2 Ras2 subfamily. 100.0 1.3E-35 2.8E-40 216.0 20.0 185 16-210 1-188 (190)
18 PLN03110 Rab GTPase; Provision 100.0 8.4E-35 1.8E-39 215.5 23.4 168 10-179 8-176 (216)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.8E-35 8.3E-40 210.3 20.1 165 14-180 2-167 (172)
20 cd04122 Rab14 Rab14 subfamily. 100.0 9E-35 1.9E-39 207.4 20.5 163 14-178 2-165 (166)
21 KOG0087 GTPase Rab11/YPT3, sma 100.0 4E-35 8.7E-40 206.3 18.0 176 5-182 5-181 (222)
22 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.1E-34 2.3E-39 209.2 20.7 164 11-177 2-180 (182)
23 KOG0093 GTPase Rab3, small G p 100.0 1.8E-35 3.8E-40 196.2 15.0 176 4-181 11-187 (193)
24 cd04133 Rop_like Rop subfamily 100.0 1.8E-34 3.8E-39 206.9 20.9 161 15-178 2-174 (176)
25 cd04111 Rab39 Rab39 subfamily. 100.0 2.3E-34 4.9E-39 212.4 22.0 169 13-182 1-171 (211)
26 cd04109 Rab28 Rab28 subfamily. 100.0 2.9E-34 6.2E-39 212.7 21.9 165 15-180 1-169 (215)
27 cd04125 RabA_like RabA-like su 100.0 3.2E-34 6.9E-39 208.5 21.5 164 15-180 1-165 (188)
28 cd04127 Rab27A Rab27a subfamil 100.0 2.6E-34 5.6E-39 207.6 20.0 167 12-179 2-179 (180)
29 cd04131 Rnd Rnd subfamily. Th 100.0 3.9E-34 8.4E-39 205.8 20.6 161 14-177 1-176 (178)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.7E-34 1.7E-38 210.8 22.5 167 10-179 9-190 (232)
31 cd01875 RhoG RhoG subfamily. 100.0 5.2E-34 1.1E-38 207.7 20.9 162 14-178 3-178 (191)
32 cd01867 Rab8_Rab10_Rab13_like 100.0 5.4E-34 1.2E-38 203.5 20.4 165 12-178 1-166 (167)
33 KOG0088 GTPase Rab21, small G 100.0 3.7E-35 7.9E-40 197.1 12.3 204 5-210 4-216 (218)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.7E-33 3.7E-38 208.0 22.3 166 15-183 2-182 (222)
35 cd04119 RJL RJL (RabJ-Like) su 100.0 1.1E-33 2.4E-38 201.8 20.0 163 15-178 1-168 (168)
36 cd04136 Rap_like Rap-like subf 100.0 1E-33 2.3E-38 201.1 19.5 160 15-176 2-162 (163)
37 cd04132 Rho4_like Rho4-like su 100.0 1.4E-33 3E-38 204.9 20.4 166 15-183 1-173 (187)
38 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2E-33 4.4E-38 200.3 20.5 163 14-178 2-165 (166)
39 cd04175 Rap1 Rap1 subgroup. T 100.0 2E-33 4.4E-38 199.9 20.0 162 14-177 1-163 (164)
40 cd01865 Rab3 Rab3 subfamily. 100.0 3.7E-33 8E-38 198.9 20.8 162 15-178 2-164 (165)
41 cd04117 Rab15 Rab15 subfamily. 100.0 2.3E-33 5.1E-38 199.1 19.7 159 15-175 1-160 (161)
42 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.6E-33 5.7E-38 201.3 20.1 160 14-176 1-174 (175)
43 PF00071 Ras: Ras family; Int 100.0 1.9E-33 4.1E-38 199.7 19.2 160 16-177 1-161 (162)
44 cd04118 Rab24 Rab24 subfamily. 100.0 9.3E-33 2E-37 201.6 22.7 163 15-180 1-169 (193)
45 cd04134 Rho3 Rho3 subfamily. 100.0 6E-33 1.3E-37 201.8 20.9 163 15-180 1-177 (189)
46 KOG0091 GTPase Rab39, small G 100.0 6.4E-34 1.4E-38 192.0 14.4 170 12-182 6-178 (213)
47 PLN03071 GTP-binding nuclear p 100.0 6.3E-33 1.4E-37 205.8 21.1 165 12-181 11-176 (219)
48 smart00173 RAS Ras subfamily o 100.0 5.5E-33 1.2E-37 197.7 20.0 162 15-177 1-162 (164)
49 cd01866 Rab2 Rab2 subfamily. 100.0 9.2E-33 2E-37 197.3 20.8 165 12-178 2-167 (168)
50 cd01871 Rac1_like Rac1-like su 100.0 7.5E-33 1.6E-37 198.7 19.7 158 15-175 2-173 (174)
51 cd04176 Rap2 Rap2 subgroup. T 100.0 6.9E-33 1.5E-37 197.0 19.3 162 14-176 1-162 (163)
52 PLN03108 Rab family protein; P 100.0 2E-32 4.4E-37 202.0 22.4 166 12-179 4-170 (210)
53 cd01864 Rab19 Rab19 subfamily. 100.0 1E-32 2.3E-37 196.5 19.7 161 13-175 2-164 (165)
54 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.2E-32 2.6E-37 198.9 20.0 163 15-180 1-169 (182)
55 cd00877 Ran Ran (Ras-related n 100.0 1.9E-32 4E-37 195.3 20.2 161 15-180 1-162 (166)
56 KOG0095 GTPase Rab30, small G 100.0 2.5E-33 5.4E-38 186.6 14.3 172 9-182 2-174 (213)
57 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.1E-32 4.5E-37 194.1 20.2 159 15-176 2-161 (162)
58 cd01868 Rab11_like Rab11-like. 100.0 2.3E-32 5E-37 194.7 20.2 162 13-176 2-164 (165)
59 cd04113 Rab4 Rab4 subfamily. 100.0 1.4E-32 3.1E-37 195.0 19.0 159 15-175 1-160 (161)
60 cd04140 ARHI_like ARHI subfami 100.0 2.1E-32 4.6E-37 194.9 19.9 159 15-175 2-163 (165)
61 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.6E-32 5.5E-37 195.3 20.3 162 16-178 2-166 (170)
62 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.4E-32 5.1E-37 194.3 20.1 161 14-176 2-163 (164)
63 KOG0086 GTPase Rab4, small G p 100.0 2.7E-33 5.9E-38 187.1 14.1 172 9-182 4-176 (214)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.8E-32 6E-37 195.2 19.8 162 14-176 2-168 (170)
65 smart00175 RAB Rab subfamily o 100.0 4E-32 8.6E-37 193.1 20.1 162 15-178 1-163 (164)
66 smart00174 RHO Rho (Ras homolo 100.0 4.2E-32 9.2E-37 194.9 19.6 159 17-178 1-173 (174)
67 cd04106 Rab23_lke Rab23-like s 100.0 4.5E-32 9.7E-37 192.6 18.7 158 15-175 1-161 (162)
68 cd04116 Rab9 Rab9 subfamily. 100.0 1E-31 2.2E-36 192.3 20.3 162 12-175 3-169 (170)
69 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-31 2.5E-36 190.4 20.3 159 15-179 1-160 (161)
70 cd01860 Rab5_related Rab5-rela 100.0 1.6E-31 3.5E-36 189.9 20.0 161 14-176 1-162 (163)
71 cd04142 RRP22 RRP22 subfamily. 100.0 1.4E-31 3.1E-36 195.5 20.1 167 15-182 1-179 (198)
72 cd04135 Tc10 TC10 subfamily. 100.0 2.2E-31 4.7E-36 191.3 20.0 160 15-176 1-173 (174)
73 KOG0081 GTPase Rab27, small G 100.0 5.3E-34 1.2E-38 191.7 5.7 174 9-183 4-187 (219)
74 KOG0097 GTPase Rab14, small G 100.0 8.6E-32 1.9E-36 177.9 16.0 199 10-210 7-215 (215)
75 cd01873 RhoBTB RhoBTB subfamil 100.0 2E-31 4.3E-36 194.1 19.5 158 14-175 2-194 (195)
76 cd04177 RSR1 RSR1 subgroup. R 100.0 3.3E-31 7.2E-36 189.3 20.0 161 15-177 2-164 (168)
77 cd01863 Rab18 Rab18 subfamily. 100.0 3.2E-31 6.9E-36 188.0 19.7 159 15-175 1-160 (161)
78 cd04103 Centaurin_gamma Centau 100.0 1.8E-31 4E-36 188.5 18.4 154 15-175 1-157 (158)
79 smart00176 RAN Ran (Ras-relate 100.0 3.2E-31 6.9E-36 193.4 20.1 157 20-181 1-158 (200)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.8E-31 8.3E-36 189.9 19.9 158 15-174 1-171 (173)
81 cd01861 Rab6 Rab6 subfamily. 100.0 3.3E-31 7.2E-36 187.9 19.3 159 15-175 1-160 (161)
82 cd04146 RERG_RasL11_like RERG/ 100.0 1.8E-31 3.8E-36 190.2 17.6 160 16-177 1-164 (165)
83 cd01862 Rab7 Rab7 subfamily. 100.0 7E-31 1.5E-35 188.1 20.5 165 15-180 1-170 (172)
84 cd04123 Rab21 Rab21 subfamily. 100.0 7E-31 1.5E-35 186.2 19.6 160 15-176 1-161 (162)
85 cd04101 RabL4 RabL4 (Rab-like4 100.0 6E-31 1.3E-35 187.2 19.3 159 15-176 1-163 (164)
86 cd04148 RGK RGK subfamily. Th 100.0 7.9E-31 1.7E-35 194.8 20.5 165 15-182 1-168 (221)
87 cd04139 RalA_RalB RalA/RalB su 100.0 1.5E-30 3.2E-35 185.0 19.8 163 15-178 1-163 (164)
88 cd01892 Miro2 Miro2 subfamily. 100.0 1E-30 2.2E-35 186.9 18.7 163 12-178 2-167 (169)
89 cd04143 Rhes_like Rhes_like su 100.0 1.1E-30 2.4E-35 196.4 19.4 160 15-176 1-170 (247)
90 cd04147 Ras_dva Ras-dva subfam 100.0 3.4E-30 7.4E-35 188.7 19.2 167 16-184 1-170 (198)
91 cd04114 Rab30 Rab30 subfamily. 100.0 8.5E-30 1.8E-34 182.1 20.7 164 11-176 4-168 (169)
92 cd04129 Rho2 Rho2 subfamily. 100.0 9.3E-30 2E-34 184.8 20.9 164 15-181 2-177 (187)
93 cd04158 ARD1 ARD1 subfamily. 100.0 3E-30 6.4E-35 184.5 17.1 160 16-182 1-166 (169)
94 cd01870 RhoA_like RhoA-like su 100.0 1.1E-29 2.3E-34 182.6 19.8 159 15-176 2-174 (175)
95 cd04149 Arf6 Arf6 subfamily. 100.0 1.8E-30 4E-35 185.3 15.6 155 13-174 8-167 (168)
96 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.9E-30 6.3E-35 186.8 16.8 167 14-183 3-176 (183)
97 cd04137 RheB Rheb (Ras Homolog 100.0 1.3E-29 2.8E-34 183.0 19.7 165 15-181 2-167 (180)
98 cd00154 Rab Rab family. Rab G 100.0 9.7E-30 2.1E-34 179.4 18.6 157 15-173 1-158 (159)
99 cd00157 Rho Rho (Ras homology) 100.0 1.2E-29 2.7E-34 181.5 19.4 158 15-174 1-170 (171)
100 cd00876 Ras Ras family. The R 100.0 1E-29 2.2E-34 179.8 18.2 158 16-175 1-159 (160)
101 PLN00223 ADP-ribosylation fact 100.0 6.4E-30 1.4E-34 184.5 16.9 161 12-179 15-180 (181)
102 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.7E-30 3.7E-35 183.9 12.9 153 15-174 1-158 (159)
103 smart00177 ARF ARF-like small 100.0 2.6E-30 5.7E-35 185.7 14.0 158 12-176 11-173 (175)
104 cd01893 Miro1 Miro1 subfamily. 100.0 3.8E-29 8.1E-34 178.3 18.5 161 15-178 1-165 (166)
105 cd04154 Arl2 Arl2 subfamily. 100.0 1.3E-29 2.8E-34 181.9 15.9 158 10-174 10-172 (173)
106 PTZ00133 ADP-ribosylation fact 100.0 5.3E-30 1.2E-34 185.1 13.8 161 12-179 15-180 (182)
107 KOG0393 Ras-related small GTPa 100.0 1.1E-29 2.5E-34 180.2 13.9 168 12-181 2-183 (198)
108 KOG0395 Ras-related GTPase [Ge 100.0 9.4E-29 2E-33 179.1 17.3 169 13-182 2-170 (196)
109 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.7E-30 3.6E-35 170.0 6.5 164 19-184 2-167 (192)
110 PTZ00132 GTP-binding nuclear p 100.0 1.3E-27 2.9E-32 177.1 21.1 171 9-184 4-175 (215)
111 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.2E-29 6.9E-34 178.3 11.9 151 17-174 2-163 (164)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.1E-28 4.5E-33 175.8 15.6 155 13-174 14-173 (174)
113 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.4E-27 3E-32 174.2 19.0 160 15-175 1-198 (202)
114 PF00025 Arf: ADP-ribosylation 100.0 3.6E-28 7.7E-33 174.4 15.6 159 11-176 11-175 (175)
115 KOG0073 GTP-binding ADP-ribosy 100.0 6.4E-28 1.4E-32 163.1 15.2 166 8-178 10-179 (185)
116 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.1E-28 6.8E-33 172.5 13.9 153 16-174 1-159 (160)
117 cd00879 Sar1 Sar1 subfamily. 100.0 5.9E-28 1.3E-32 175.8 15.6 157 12-175 17-189 (190)
118 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.9E-28 4.1E-33 174.8 12.6 154 16-174 1-166 (167)
119 cd04151 Arl1 Arl1 subfamily. 100.0 2.2E-28 4.8E-33 173.0 12.7 152 16-174 1-157 (158)
120 cd00878 Arf_Arl Arf (ADP-ribos 100.0 6.3E-28 1.4E-32 170.6 14.2 152 16-174 1-157 (158)
121 cd04157 Arl6 Arl6 subfamily. 100.0 6.3E-28 1.4E-32 171.2 13.0 152 16-174 1-161 (162)
122 smart00178 SAR Sar1p-like memb 100.0 2.5E-27 5.4E-32 171.6 15.3 157 12-175 15-183 (184)
123 KOG4252 GTP-binding protein [S 100.0 1.5E-29 3.2E-34 173.6 2.5 172 8-182 14-186 (246)
124 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.9E-27 4.1E-32 169.6 13.5 152 16-174 1-166 (167)
125 PTZ00099 rab6; Provisional 99.9 4.3E-26 9.4E-31 163.4 18.6 144 37-182 3-147 (176)
126 PLN00023 GTP-binding protein; 99.9 3.9E-26 8.5E-31 174.4 18.0 174 8-182 15-235 (334)
127 cd04155 Arl3 Arl3 subfamily. 99.9 1E-25 2.2E-30 161.6 15.9 155 10-174 10-172 (173)
128 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-25 3.3E-30 159.9 16.0 156 16-177 2-168 (168)
129 cd01890 LepA LepA subfamily. 99.9 1.5E-25 3.2E-30 161.6 15.1 153 16-176 2-176 (179)
130 cd04159 Arl10_like Arl10-like 99.9 1.2E-25 2.6E-30 158.5 13.3 151 17-174 2-158 (159)
131 cd01898 Obg Obg subfamily. Th 99.9 2.8E-25 6.1E-30 158.8 13.9 156 16-175 2-169 (170)
132 TIGR00231 small_GTP small GTP- 99.9 2.6E-24 5.7E-29 151.4 18.0 158 14-173 1-160 (161)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 9.7E-25 2.1E-29 170.3 16.9 165 14-180 158-331 (335)
134 KOG0070 GTP-binding ADP-ribosy 99.9 2.7E-25 5.8E-30 154.2 11.9 163 10-179 13-180 (181)
135 PRK15494 era GTPase Era; Provi 99.9 8.2E-25 1.8E-29 171.7 15.5 171 12-191 50-230 (339)
136 KOG3883 Ras family small GTPas 99.9 3.6E-24 7.8E-29 143.4 16.2 170 11-182 6-180 (198)
137 TIGR00436 era GTP-binding prot 99.9 1.4E-24 3.1E-29 165.9 15.6 165 16-188 2-175 (270)
138 cd01878 HflX HflX subfamily. 99.9 2.7E-24 5.9E-29 158.2 14.8 157 12-176 39-204 (204)
139 TIGR02528 EutP ethanolamine ut 99.9 1.4E-24 3.1E-29 150.8 12.3 134 16-173 2-141 (142)
140 cd04171 SelB SelB subfamily. 99.9 4.9E-24 1.1E-28 151.4 13.6 153 16-174 2-163 (164)
141 cd00882 Ras_like_GTPase Ras-li 99.9 1.5E-23 3.3E-28 146.2 16.0 154 19-173 1-156 (157)
142 COG1100 GTPase SAR1 and relate 99.9 2.7E-23 5.8E-28 154.5 18.0 170 14-184 5-192 (219)
143 KOG0071 GTP-binding ADP-ribosy 99.9 1.1E-23 2.3E-28 139.2 13.3 157 13-176 16-177 (180)
144 PRK04213 GTP-binding protein; 99.9 3.3E-24 7.2E-29 157.4 12.3 155 11-178 6-193 (201)
145 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.9E-23 4.1E-28 147.1 14.8 147 15-176 2-156 (157)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.5E-23 1.4E-27 146.2 16.1 156 16-177 2-166 (168)
147 PF02421 FeoB_N: Ferrous iron 99.9 3.6E-24 7.8E-29 148.6 8.2 148 15-172 1-156 (156)
148 cd01879 FeoB Ferrous iron tran 99.9 5.1E-23 1.1E-27 145.3 14.2 147 19-176 1-156 (158)
149 cd01891 TypA_BipA TypA (tyrosi 99.9 3.7E-23 8.1E-28 151.0 13.5 158 15-178 3-189 (194)
150 cd01881 Obg_like The Obg-like 99.9 1.8E-23 4E-28 150.1 11.6 155 19-175 1-175 (176)
151 PF08477 Miro: Miro-like prote 99.9 3.1E-23 6.7E-28 139.8 11.9 114 16-131 1-119 (119)
152 TIGR02729 Obg_CgtA Obg family 99.9 8.1E-23 1.8E-27 159.4 15.5 160 14-176 157-328 (329)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.2E-22 2.6E-27 164.1 16.5 152 12-179 201-362 (442)
154 KOG0075 GTP-binding ADP-ribosy 99.9 2.1E-23 4.6E-28 138.8 9.7 157 13-176 19-181 (186)
155 PRK00089 era GTPase Era; Revie 99.9 9.9E-23 2.1E-27 157.7 15.1 168 13-186 4-180 (292)
156 PRK03003 GTP-binding protein D 99.9 8.4E-23 1.8E-27 167.2 15.1 155 13-178 37-200 (472)
157 cd01894 EngA1 EngA1 subfamily. 99.9 6.4E-23 1.4E-27 144.5 12.3 147 18-175 1-156 (157)
158 PRK03003 GTP-binding protein D 99.9 9.1E-23 2E-27 167.0 14.9 164 12-183 209-388 (472)
159 TIGR03594 GTPase_EngA ribosome 99.9 3.3E-22 7.2E-27 162.6 17.9 165 12-183 170-350 (429)
160 PRK05291 trmE tRNA modificatio 99.9 1E-22 2.3E-27 165.2 14.1 148 13-178 214-371 (449)
161 KOG1673 Ras GTPases [General f 99.9 1.7E-22 3.7E-27 135.7 12.1 175 10-187 16-196 (205)
162 cd00881 GTP_translation_factor 99.9 3.7E-22 7.9E-27 144.9 14.6 155 16-176 1-186 (189)
163 TIGR01393 lepA GTP-binding pro 99.9 6.1E-22 1.3E-26 165.1 17.4 157 14-178 3-181 (595)
164 COG1159 Era GTPase [General fu 99.9 1.9E-22 4E-27 150.5 12.7 172 12-189 4-184 (298)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 1.3E-21 2.9E-26 156.4 18.0 162 15-182 159-332 (424)
166 TIGR03156 GTP_HflX GTP-binding 99.9 4.3E-22 9.3E-27 156.6 14.8 154 12-175 187-350 (351)
167 cd04163 Era Era subfamily. Er 99.9 8E-22 1.7E-26 140.0 14.9 156 14-175 3-167 (168)
168 cd01888 eIF2_gamma eIF2-gamma 99.9 6.3E-22 1.4E-26 145.4 13.9 160 15-178 1-200 (203)
169 cd01895 EngA2 EngA2 subfamily. 99.9 1.5E-21 3.3E-26 139.6 15.4 154 14-175 2-173 (174)
170 cd01889 SelB_euk SelB subfamil 99.9 1.1E-21 2.4E-26 143.0 14.6 158 15-178 1-187 (192)
171 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-21 2.2E-26 159.0 15.5 167 13-182 158-345 (500)
172 PRK15467 ethanolamine utilizat 99.9 7.3E-22 1.6E-26 139.4 12.9 140 16-178 3-148 (158)
173 KOG0074 GTP-binding ADP-ribosy 99.9 1.8E-22 4E-27 133.5 9.1 161 11-175 14-177 (185)
174 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-21 3.3E-26 155.2 15.7 171 15-188 160-344 (390)
175 cd04105 SR_beta Signal recogni 99.9 6.2E-21 1.3E-25 139.9 16.0 119 16-134 2-123 (203)
176 TIGR00487 IF-2 translation ini 99.9 6.9E-21 1.5E-25 158.2 17.8 154 11-174 84-247 (587)
177 TIGR03594 GTPase_EngA ribosome 99.9 2.8E-21 6.1E-26 157.2 15.0 152 16-178 1-161 (429)
178 PRK00454 engB GTP-binding prot 99.9 9.7E-21 2.1E-25 138.4 16.2 159 10-177 20-194 (196)
179 TIGR03598 GTPase_YsxC ribosome 99.9 4.9E-21 1.1E-25 138.1 13.7 149 9-166 13-179 (179)
180 KOG0072 GTP-binding ADP-ribosy 99.9 3.4E-22 7.4E-27 132.6 6.7 163 12-179 16-181 (182)
181 PRK11058 GTPase HflX; Provisio 99.9 6E-21 1.3E-25 153.4 14.6 157 15-179 198-364 (426)
182 CHL00189 infB translation init 99.9 1.2E-20 2.6E-25 159.1 16.8 157 11-176 241-409 (742)
183 PRK00093 GTP-binding protein D 99.9 1.1E-20 2.5E-25 153.8 16.2 163 12-181 171-348 (435)
184 PRK00093 GTP-binding protein D 99.9 6.6E-21 1.4E-25 155.2 14.6 148 15-175 2-160 (435)
185 PRK05433 GTP-binding protein L 99.9 1.4E-20 3E-25 157.2 16.1 160 12-179 5-186 (600)
186 TIGR00475 selB selenocysteine- 99.9 1.2E-20 2.6E-25 157.3 15.6 157 15-179 1-168 (581)
187 cd00880 Era_like Era (E. coli 99.9 9.4E-21 2E-25 133.3 12.1 151 19-175 1-162 (163)
188 PRK09518 bifunctional cytidyla 99.9 2.8E-20 6.1E-25 159.0 16.9 158 10-178 271-437 (712)
189 PRK05306 infB translation init 99.9 3.5E-20 7.7E-25 157.5 17.3 154 11-175 287-450 (787)
190 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 5.3E-21 1.2E-25 132.7 10.0 168 12-184 8-176 (216)
191 PF00009 GTP_EFTU: Elongation 99.9 9.8E-21 2.1E-25 137.5 11.9 158 13-176 2-186 (188)
192 PRK09554 feoB ferrous iron tra 99.8 6.2E-20 1.3E-24 156.6 17.3 153 14-176 3-167 (772)
193 PRK09518 bifunctional cytidyla 99.8 2.2E-20 4.8E-25 159.6 14.5 161 13-183 449-627 (712)
194 KOG0076 GTP-binding ADP-ribosy 99.8 4.3E-21 9.3E-26 131.4 7.1 164 9-179 12-189 (197)
195 TIGR00437 feoB ferrous iron tr 99.8 4.7E-20 1E-24 154.0 14.5 144 21-176 1-154 (591)
196 COG1160 Predicted GTPases [Gen 99.8 2.6E-20 5.5E-25 146.4 11.9 152 15-177 4-165 (444)
197 PRK12317 elongation factor 1-a 99.8 6.9E-20 1.5E-24 148.6 14.8 155 12-169 4-197 (425)
198 KOG4423 GTP-binding protein-li 99.8 3.7E-22 7.9E-27 138.1 -0.2 189 11-200 22-218 (229)
199 TIGR00483 EF-1_alpha translati 99.8 1.5E-19 3.2E-24 146.6 14.7 156 11-169 4-199 (426)
200 COG1160 Predicted GTPases [Gen 99.8 1.7E-19 3.7E-24 141.8 14.3 165 13-183 177-357 (444)
201 COG0486 ThdF Predicted GTPase 99.8 1.9E-19 4.2E-24 141.8 14.0 156 12-179 215-378 (454)
202 PF10662 PduV-EutP: Ethanolami 99.8 2.2E-19 4.7E-24 122.0 12.4 135 16-173 3-142 (143)
203 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.2E-19 2.5E-24 133.8 11.4 148 16-168 1-185 (208)
204 TIGR03680 eif2g_arch translati 99.8 2.9E-19 6.2E-24 143.8 14.3 162 12-177 2-196 (406)
205 cd01896 DRG The developmentall 99.8 7.7E-19 1.7E-23 131.3 15.5 151 16-176 2-225 (233)
206 PRK10218 GTP-binding protein; 99.8 1.4E-18 3.1E-23 144.7 17.1 161 13-179 4-197 (607)
207 COG2229 Predicted GTPase [Gene 99.8 2.7E-18 5.8E-23 119.3 15.3 159 7-175 3-176 (187)
208 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.1E-18 4.5E-23 125.5 15.3 147 14-166 2-172 (195)
209 PRK04000 translation initiatio 99.8 8.4E-19 1.8E-23 141.1 14.6 162 11-177 6-201 (411)
210 TIGR00491 aIF-2 translation in 99.8 6.7E-19 1.5E-23 146.2 14.1 156 15-176 5-215 (590)
211 TIGR01394 TypA_BipA GTP-bindin 99.8 9.1E-19 2E-23 146.0 14.6 158 16-179 3-193 (594)
212 KOG1423 Ras-like GTPase ERA [C 99.8 1.6E-18 3.5E-23 129.3 14.0 179 5-188 63-282 (379)
213 cd04168 TetM_like Tet(M)-like 99.8 1.3E-18 2.7E-23 130.4 12.1 112 16-133 1-129 (237)
214 cd01876 YihA_EngB The YihA (En 99.8 3.4E-18 7.3E-23 121.6 13.1 151 16-175 1-169 (170)
215 cd01883 EF1_alpha Eukaryotic e 99.8 1.1E-18 2.4E-23 129.6 10.3 147 16-166 1-194 (219)
216 PRK04004 translation initiatio 99.8 5.6E-18 1.2E-22 141.2 15.2 156 12-176 4-217 (586)
217 PRK10512 selenocysteinyl-tRNA- 99.8 6.4E-18 1.4E-22 141.6 14.8 155 16-177 2-166 (614)
218 PRK12736 elongation factor Tu; 99.8 1.1E-17 2.4E-22 134.2 15.6 161 11-177 9-201 (394)
219 KOG1707 Predicted Ras related/ 99.8 1.1E-18 2.4E-23 139.9 9.4 171 11-182 6-180 (625)
220 cd04167 Snu114p Snu114p subfam 99.8 4.7E-18 1E-22 125.8 11.4 112 16-133 2-136 (213)
221 PRK12735 elongation factor Tu; 99.8 3.9E-17 8.5E-22 131.1 15.9 160 11-176 9-202 (396)
222 TIGR00485 EF-Tu translation el 99.8 2.4E-17 5.1E-22 132.4 14.6 147 11-163 9-179 (394)
223 COG0370 FeoB Fe2+ transport sy 99.8 1.3E-17 2.9E-22 136.8 13.0 157 14-180 3-167 (653)
224 COG0218 Predicted GTPase [Gene 99.8 8.4E-17 1.8E-21 114.3 14.9 160 9-178 19-198 (200)
225 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.9E-17 4.2E-22 122.4 12.0 173 16-190 1-189 (232)
226 KOG0077 Vesicle coat complex C 99.7 4.7E-18 1E-22 115.7 7.3 159 12-175 18-191 (193)
227 KOG1489 Predicted GTP-binding 99.7 4.5E-17 9.7E-22 122.2 13.2 156 14-174 196-364 (366)
228 CHL00071 tufA elongation facto 99.7 9.9E-17 2.1E-21 129.3 15.5 149 11-165 9-181 (409)
229 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.6E-16 3.4E-21 118.1 14.9 152 16-173 1-219 (224)
230 cd04169 RF3 RF3 subfamily. Pe 99.7 1.1E-16 2.4E-21 121.8 14.0 115 15-135 3-138 (267)
231 cd04104 p47_IIGP_like p47 (47- 99.7 1.5E-16 3.2E-21 116.4 13.3 160 14-182 1-189 (197)
232 PRK05124 cysN sulfate adenylyl 99.7 1.2E-16 2.5E-21 130.7 13.3 153 11-168 24-216 (474)
233 TIGR02034 CysN sulfate adenyly 99.7 1.9E-16 4.1E-21 127.5 12.8 148 15-167 1-187 (406)
234 PRK00741 prfC peptide chain re 99.7 1.9E-16 4.2E-21 130.5 13.0 118 10-133 6-144 (526)
235 KOG0462 Elongation factor-type 99.7 2.4E-16 5.2E-21 125.8 12.8 166 10-181 56-239 (650)
236 cd01850 CDC_Septin CDC/Septin. 99.7 1.1E-15 2.5E-20 116.8 16.0 144 13-162 3-187 (276)
237 PRK00049 elongation factor Tu; 99.7 9.1E-16 2E-20 123.2 16.0 159 11-175 9-201 (396)
238 cd01886 EF-G Elongation factor 99.7 2.4E-16 5.1E-21 120.1 12.0 141 16-162 1-160 (270)
239 PLN03126 Elongation factor Tu; 99.7 2.2E-16 4.8E-21 128.7 12.4 148 11-164 78-249 (478)
240 COG0532 InfB Translation initi 99.7 6.6E-16 1.4E-20 123.7 14.5 158 13-179 4-172 (509)
241 cd01885 EF2 EF2 (for archaea a 99.7 7.8E-16 1.7E-20 113.9 13.7 112 16-133 2-138 (222)
242 PLN00043 elongation factor 1-a 99.7 5.9E-16 1.3E-20 125.6 14.2 150 12-167 5-203 (447)
243 cd04170 EF-G_bact Elongation f 99.7 1.1E-16 2.5E-21 122.4 9.2 151 16-174 1-170 (268)
244 PLN03127 Elongation factor Tu; 99.7 1.9E-15 4E-20 122.7 16.5 160 11-176 58-251 (447)
245 PTZ00141 elongation factor 1- 99.7 8.4E-16 1.8E-20 124.8 14.2 151 12-167 5-203 (446)
246 COG2262 HflX GTPases [General 99.7 2.1E-15 4.5E-20 117.4 15.2 165 10-182 188-361 (411)
247 PF01926 MMR_HSR1: 50S ribosom 99.7 3.7E-16 8.1E-21 104.7 9.4 105 16-129 1-116 (116)
248 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 3.1E-15 6.7E-20 109.3 14.9 162 15-179 1-186 (196)
249 PRK13351 elongation factor G; 99.7 6.2E-16 1.3E-20 132.3 12.2 119 10-134 4-139 (687)
250 COG1084 Predicted GTPase [Gene 99.7 3.6E-15 7.8E-20 112.8 13.7 157 13-176 167-335 (346)
251 COG1163 DRG Predicted GTPase [ 99.7 5.9E-15 1.3E-19 111.4 14.8 156 12-176 61-288 (365)
252 PRK05506 bifunctional sulfate 99.7 2.5E-15 5.5E-20 127.4 14.2 152 11-167 21-211 (632)
253 PTZ00327 eukaryotic translatio 99.7 3E-15 6.6E-20 121.3 13.4 163 11-177 31-233 (460)
254 PF09439 SRPRB: Signal recogni 99.7 6E-16 1.3E-20 109.8 8.2 119 14-135 3-127 (181)
255 COG0481 LepA Membrane GTPase L 99.7 2.7E-15 5.9E-20 118.2 12.6 171 11-192 6-198 (603)
256 KOG1145 Mitochondrial translat 99.6 6.1E-15 1.3E-19 118.0 14.1 153 11-175 150-314 (683)
257 KOG1191 Mitochondrial GTPase [ 99.6 8.8E-16 1.9E-20 121.4 9.3 168 12-180 266-453 (531)
258 cd01899 Ygr210 Ygr210 subfamil 99.6 4.2E-15 9.2E-20 115.4 12.5 163 17-183 1-275 (318)
259 COG0536 Obg Predicted GTPase [ 99.6 9.2E-15 2E-19 111.1 13.4 162 15-180 160-336 (369)
260 TIGR00503 prfC peptide chain r 99.6 1.1E-15 2.4E-20 126.1 7.5 121 9-135 6-147 (527)
261 PRK12739 elongation factor G; 99.6 2.3E-14 5E-19 122.6 15.3 118 11-134 5-139 (691)
262 COG5256 TEF1 Translation elong 99.6 1.1E-14 2.5E-19 113.3 12.2 153 12-168 5-202 (428)
263 COG4917 EutP Ethanolamine util 99.6 5E-15 1.1E-19 96.5 8.5 137 15-174 2-143 (148)
264 TIGR00484 EF-G translation elo 99.6 1.1E-14 2.4E-19 124.5 12.9 144 11-162 7-171 (689)
265 COG3596 Predicted GTPase [Gene 99.6 8.4E-15 1.8E-19 108.4 10.1 164 11-180 36-225 (296)
266 PRK09602 translation-associate 99.6 9E-14 2E-18 111.1 14.9 168 15-186 2-280 (396)
267 PRK09866 hypothetical protein; 99.6 2.7E-13 5.9E-18 111.6 17.2 109 62-174 230-350 (741)
268 KOG0090 Signal recognition par 99.6 5.5E-14 1.2E-18 100.1 11.1 157 14-175 38-237 (238)
269 COG5257 GCD11 Translation init 99.5 3.4E-14 7.4E-19 107.1 8.9 190 12-205 8-230 (415)
270 PF05783 DLIC: Dynein light in 99.5 4.5E-13 9.7E-18 108.6 15.4 168 13-182 24-269 (472)
271 KOG3905 Dynein light intermedi 99.5 5.1E-13 1.1E-17 101.0 14.6 168 13-182 51-295 (473)
272 PRK00007 elongation factor G; 99.5 1.8E-13 4E-18 117.0 13.7 144 11-162 7-171 (693)
273 PRK12740 elongation factor G; 99.5 1.5E-13 3.2E-18 117.6 12.7 108 20-133 1-125 (668)
274 PF04548 AIG1: AIG1 family; I 99.5 2.1E-13 4.6E-18 100.7 11.5 163 15-181 1-190 (212)
275 cd01853 Toc34_like Toc34-like 99.5 2.8E-13 6.2E-18 101.9 12.2 125 9-135 26-164 (249)
276 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4E-13 8.7E-18 102.8 13.0 172 10-184 34-251 (313)
277 TIGR00490 aEF-2 translation el 99.5 2.9E-14 6.3E-19 122.3 6.4 119 9-133 14-151 (720)
278 KOG1707 Predicted Ras related/ 99.5 2.5E-12 5.5E-17 103.9 15.3 166 7-180 418-586 (625)
279 cd00066 G-alpha G protein alph 99.5 1.1E-12 2.4E-17 102.4 13.0 119 60-179 159-313 (317)
280 KOG1490 GTP-binding protein CR 99.5 1.1E-13 2.5E-18 109.8 7.0 165 12-180 166-344 (620)
281 COG2895 CysN GTPases - Sulfate 99.5 8.6E-13 1.9E-17 100.8 11.0 152 11-167 3-193 (431)
282 KOG0461 Selenocysteine-specifi 99.5 3.9E-12 8.4E-17 97.1 14.1 165 12-182 5-198 (522)
283 PRK13768 GTPase; Provisional 99.5 8.1E-13 1.8E-17 100.0 10.4 113 63-177 98-247 (253)
284 KOG1532 GTPase XAB1, interacts 99.4 1.4E-13 2.9E-18 101.8 5.8 174 8-185 13-272 (366)
285 PRK14845 translation initiatio 99.4 2E-12 4.4E-17 113.1 13.9 142 26-176 473-672 (1049)
286 PTZ00258 GTP-binding protein; 99.4 3.4E-12 7.4E-17 101.2 13.7 86 10-96 17-126 (390)
287 TIGR00101 ureG urease accessor 99.4 2.5E-12 5.5E-17 93.9 11.9 103 62-177 92-196 (199)
288 COG1217 TypA Predicted membran 99.4 4.2E-12 9.2E-17 100.3 12.7 162 13-180 4-198 (603)
289 smart00275 G_alpha G protein a 99.4 7E-12 1.5E-16 98.7 14.0 118 61-179 183-336 (342)
290 PLN00116 translation elongatio 99.4 1.1E-12 2.4E-17 114.3 9.0 119 9-133 14-163 (843)
291 TIGR00157 ribosome small subun 99.4 3.6E-12 7.7E-17 96.0 10.4 96 73-174 24-120 (245)
292 PTZ00416 elongation factor 2; 99.4 1.6E-12 3.4E-17 113.2 9.4 117 11-133 16-157 (836)
293 PRK07560 elongation factor EF- 99.4 4E-12 8.7E-17 109.5 11.8 119 9-133 15-152 (731)
294 TIGR02836 spore_IV_A stage IV 99.4 1.7E-11 3.7E-16 96.5 13.8 157 12-174 15-234 (492)
295 smart00010 small_GTPase Small 99.4 3.5E-12 7.6E-17 86.1 8.1 115 15-166 1-115 (124)
296 TIGR00073 hypB hydrogenase acc 99.4 1.2E-11 2.7E-16 91.1 11.3 152 11-175 19-205 (207)
297 PRK09435 membrane ATPase/prote 99.3 9.4E-12 2E-16 97.0 10.6 104 61-177 148-260 (332)
298 cd01882 BMS1 Bms1. Bms1 is an 99.3 4E-11 8.7E-16 89.4 13.4 139 11-163 36-182 (225)
299 KOG0458 Elongation factor 1 al 99.3 1.8E-11 3.9E-16 99.0 11.8 158 7-168 170-373 (603)
300 PRK09601 GTP-binding protein Y 99.3 4.6E-11 9.9E-16 93.8 12.7 81 15-96 3-107 (364)
301 PF03029 ATP_bind_1: Conserved 99.3 2.7E-12 5.9E-17 96.0 5.2 113 63-176 92-236 (238)
302 KOG0705 GTPase-activating prot 99.3 1.7E-11 3.7E-16 98.5 8.6 172 1-179 17-191 (749)
303 PF05049 IIGP: Interferon-indu 99.3 6.1E-11 1.3E-15 93.2 10.4 161 12-181 33-222 (376)
304 COG4108 PrfC Peptide chain rel 99.3 3.4E-11 7.3E-16 94.6 8.8 138 9-154 7-165 (528)
305 PF00735 Septin: Septin; Inte 99.2 1.8E-10 3.8E-15 88.3 11.7 142 13-160 3-184 (281)
306 KOG1144 Translation initiation 99.2 9.1E-11 2E-15 97.4 10.4 158 12-178 473-688 (1064)
307 TIGR00750 lao LAO/AO transport 99.2 8E-11 1.7E-15 91.5 9.3 103 61-176 126-237 (300)
308 PF00350 Dynamin_N: Dynamin fa 99.2 8E-11 1.7E-15 83.8 8.5 63 63-130 102-168 (168)
309 KOG0082 G-protein alpha subuni 99.2 3.3E-10 7.2E-15 88.0 12.3 124 55-179 188-346 (354)
310 COG0480 FusA Translation elong 99.2 3E-10 6.6E-15 96.2 13.0 119 11-135 7-143 (697)
311 COG3276 SelB Selenocysteine-sp 99.2 5.6E-10 1.2E-14 88.0 12.8 156 16-177 2-162 (447)
312 PF03308 ArgK: ArgK protein; 99.2 2E-11 4.4E-16 90.5 4.3 150 12-175 27-228 (266)
313 TIGR00993 3a0901s04IAP86 chlor 99.2 3.3E-10 7.2E-15 94.1 11.6 120 12-134 116-250 (763)
314 COG1703 ArgK Putative periplas 99.2 5E-10 1.1E-14 84.4 10.4 152 12-176 49-253 (323)
315 COG0378 HypB Ni2+-binding GTPa 99.1 6.6E-10 1.4E-14 78.8 10.0 149 14-176 13-200 (202)
316 COG0012 Predicted GTPase, prob 99.1 1.2E-09 2.6E-14 85.0 12.3 84 14-97 2-109 (372)
317 KOG3886 GTP-binding protein [S 99.1 1.5E-10 3.2E-15 83.8 6.4 168 13-182 3-183 (295)
318 smart00053 DYNc Dynamin, GTPas 99.1 1.4E-09 3.1E-14 81.2 11.4 69 62-135 125-207 (240)
319 KOG0468 U5 snRNP-specific prot 99.1 1.1E-09 2.4E-14 90.2 10.4 118 9-132 123-261 (971)
320 KOG1486 GTP-binding protein DR 99.1 1.1E-08 2.4E-13 75.3 14.0 158 13-171 61-231 (364)
321 KOG3887 Predicted small GTPase 99.1 6.8E-10 1.5E-14 81.1 7.7 172 15-188 28-213 (347)
322 COG0050 TufB GTPases - transla 99.0 2.4E-09 5.2E-14 80.4 9.4 160 12-180 10-204 (394)
323 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 7.2E-10 1.6E-14 76.7 6.4 54 16-72 85-138 (141)
324 cd01855 YqeH YqeH. YqeH is an 99.0 2.2E-09 4.8E-14 78.0 9.0 96 75-179 24-127 (190)
325 cd04178 Nucleostemin_like Nucl 99.0 9.8E-10 2.1E-14 78.4 6.7 57 12-71 115-171 (172)
326 PF00503 G-alpha: G-protein al 99.0 8.8E-09 1.9E-13 83.0 12.3 116 60-176 234-389 (389)
327 PRK10463 hydrogenase nickel in 99.0 2.4E-09 5.1E-14 81.7 8.4 55 121-175 231-287 (290)
328 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.7E-09 3.7E-14 76.2 7.1 56 13-71 101-156 (157)
329 KOG1487 GTP-binding protein DR 99.0 6.4E-09 1.4E-13 76.8 9.6 91 15-106 60-157 (358)
330 KOG0410 Predicted GTP binding 99.0 6.6E-10 1.4E-14 84.4 4.5 155 11-180 175-344 (410)
331 cd01900 YchF YchF subfamily. 99.0 1.2E-09 2.7E-14 83.1 5.9 79 17-96 1-103 (274)
332 PRK00098 GTPase RsgA; Reviewed 99.0 5E-09 1.1E-13 81.3 9.4 89 80-173 75-163 (298)
333 cd01859 MJ1464 MJ1464. This f 99.0 2.3E-09 5.1E-14 75.4 6.7 94 77-178 4-97 (156)
334 KOG1954 Endocytosis/signaling 98.9 8.8E-09 1.9E-13 79.7 9.4 126 7-137 51-228 (532)
335 KOG2655 Septin family protein 98.9 5.7E-08 1.2E-12 75.8 13.4 157 12-177 19-214 (366)
336 PRK12289 GTPase RsgA; Reviewed 98.9 1.1E-08 2.5E-13 80.7 9.5 91 78-175 82-173 (352)
337 COG5019 CDC3 Septin family pro 98.9 3.3E-08 7.2E-13 76.6 11.6 139 12-156 21-200 (373)
338 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.3E-08 2.9E-13 78.6 9.5 89 79-174 72-161 (287)
339 KOG0466 Translation initiation 98.9 2E-09 4.4E-14 81.2 3.7 188 10-201 34-265 (466)
340 PRK12288 GTPase RsgA; Reviewed 98.9 3.2E-08 7E-13 78.1 10.5 89 82-175 117-206 (347)
341 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.5E-08 3.1E-13 78.4 8.0 59 12-73 119-177 (287)
342 cd01856 YlqF YlqF. Proteins o 98.8 1E-08 2.2E-13 73.3 6.6 58 12-72 113-170 (171)
343 TIGR03596 GTPase_YlqF ribosome 98.8 1.2E-08 2.6E-13 78.5 7.2 58 12-72 116-173 (276)
344 cd01859 MJ1464 MJ1464. This f 98.8 1.4E-08 3E-13 71.5 6.9 56 13-71 100-155 (156)
345 COG1161 Predicted GTPases [Gen 98.8 1.1E-08 2.4E-13 80.1 6.4 58 13-73 131-188 (322)
346 KOG1547 Septin CDC10 and relat 98.8 1.7E-07 3.7E-12 68.7 11.7 146 12-163 44-229 (336)
347 KOG0448 Mitofusin 1 GTPase, in 98.8 1.1E-07 2.3E-12 79.0 11.7 144 12-161 107-310 (749)
348 cd01855 YqeH YqeH. YqeH is an 98.7 2.3E-08 5.1E-13 72.7 5.8 55 14-71 127-189 (190)
349 TIGR03597 GTPase_YqeH ribosome 98.7 9.7E-08 2.1E-12 76.1 9.0 95 72-175 50-151 (360)
350 cd01849 YlqF_related_GTPase Yl 98.7 4.2E-08 9.2E-13 68.9 6.2 57 12-71 98-154 (155)
351 KOG0085 G protein subunit Galp 98.7 2.1E-08 4.6E-13 73.0 4.1 125 54-179 191-351 (359)
352 KOG1143 Predicted translation 98.7 1.7E-07 3.8E-12 72.9 9.1 155 9-169 162-380 (591)
353 KOG0464 Elongation factor G [T 98.6 1.8E-08 4E-13 79.2 3.0 154 6-167 29-201 (753)
354 PF09547 Spore_IV_A: Stage IV 98.6 9.7E-07 2.1E-11 70.1 12.4 155 13-173 16-233 (492)
355 cd01851 GBP Guanylate-binding 98.6 8.1E-07 1.8E-11 66.2 11.4 90 12-102 5-108 (224)
356 COG1618 Predicted nucleotide k 98.6 3.9E-06 8.5E-11 58.0 13.6 147 12-176 3-175 (179)
357 KOG2486 Predicted GTPase [Gene 98.6 5.5E-08 1.2E-12 72.7 4.9 157 9-174 131-313 (320)
358 KOG0467 Translation elongation 98.6 2E-07 4.4E-12 78.1 7.8 116 8-132 3-136 (887)
359 cd01858 NGP_1 NGP-1. Autoanti 98.6 4.1E-07 8.9E-12 64.0 8.3 91 81-176 4-94 (157)
360 TIGR00092 GTP-binding protein 98.6 2.7E-07 5.9E-12 72.9 8.0 81 15-97 3-109 (368)
361 PRK12288 GTPase RsgA; Reviewed 98.6 1.2E-07 2.6E-12 74.9 6.1 57 17-76 208-271 (347)
362 cd01849 YlqF_related_GTPase Yl 98.6 4.4E-07 9.6E-12 63.8 8.4 84 87-176 1-84 (155)
363 PRK12289 GTPase RsgA; Reviewed 98.6 1.3E-07 2.8E-12 74.8 6.0 56 17-75 175-237 (352)
364 COG5192 BMS1 GTP-binding prote 98.5 1.1E-06 2.5E-11 71.9 10.7 136 12-161 67-210 (1077)
365 KOG1424 Predicted GTP-binding 98.5 1.5E-07 3.2E-12 75.9 5.4 57 13-72 313-369 (562)
366 KOG1491 Predicted GTP-binding 98.5 3.5E-07 7.5E-12 70.3 6.5 87 11-97 17-126 (391)
367 PF03266 NTPase_1: NTPase; In 98.5 2E-06 4.3E-11 61.1 9.7 134 16-165 1-163 (168)
368 COG5258 GTPBP1 GTPase [General 98.5 2.4E-06 5.3E-11 66.9 10.7 164 9-179 112-340 (527)
369 KOG0099 G protein subunit Galp 98.5 5.1E-07 1.1E-11 67.1 6.3 114 60-178 200-370 (379)
370 TIGR00157 ribosome small subun 98.5 3.7E-07 7.9E-12 69.0 5.8 58 15-76 121-185 (245)
371 PF03193 DUF258: Protein of un 98.5 2.1E-07 4.6E-12 65.1 4.1 59 15-76 36-101 (161)
372 KOG0460 Mitochondrial translat 98.5 2.3E-06 5.1E-11 65.9 9.9 143 13-160 53-218 (449)
373 PRK10416 signal recognition pa 98.4 2.1E-06 4.5E-11 67.2 9.9 94 61-168 196-301 (318)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 6.9E-07 1.5E-11 61.7 6.0 79 80-164 6-84 (141)
375 PRK13796 GTPase YqeH; Provisio 98.4 4.6E-07 9.9E-12 72.4 5.5 56 15-73 161-221 (365)
376 cd01856 YlqF YlqF. Proteins o 98.4 1E-06 2.2E-11 63.0 6.4 90 78-177 12-101 (171)
377 TIGR03597 GTPase_YqeH ribosome 98.4 8.2E-07 1.8E-11 70.8 6.5 57 15-74 155-216 (360)
378 KOG0463 GTP-binding protein GP 98.4 9.1E-07 2E-11 69.0 6.4 163 12-184 131-364 (641)
379 TIGR00064 ftsY signal recognit 98.4 1.9E-06 4.1E-11 66.0 8.1 95 61-169 154-260 (272)
380 TIGR03596 GTPase_YlqF ribosome 98.4 2.9E-06 6.4E-11 65.3 8.8 91 78-178 14-104 (276)
381 PRK14974 cell division protein 98.4 6.6E-07 1.4E-11 70.3 5.2 94 62-169 223-322 (336)
382 KOG0447 Dynamin-like GTP bindi 98.3 1.4E-05 3.1E-10 65.3 12.5 85 62-150 412-509 (980)
383 PRK01889 GTPase RsgA; Reviewed 98.3 3.9E-06 8.4E-11 66.8 9.1 86 81-173 108-193 (356)
384 KOG0459 Polypeptide release fa 98.3 7.2E-07 1.6E-11 70.0 4.8 161 9-170 74-279 (501)
385 KOG4273 Uncharacterized conser 98.3 1.2E-05 2.5E-10 59.6 10.8 156 15-176 5-221 (418)
386 TIGR03348 VI_IcmF type VI secr 98.3 5E-06 1.1E-10 75.7 10.6 111 17-134 114-257 (1169)
387 cd03112 CobW_like The function 98.3 3.4E-06 7.3E-11 59.5 7.2 65 61-132 86-158 (158)
388 PRK13796 GTPase YqeH; Provisio 98.3 7.4E-06 1.6E-10 65.5 9.4 84 83-175 66-157 (365)
389 PRK00098 GTPase RsgA; Reviewed 98.3 2.1E-06 4.6E-11 66.8 6.2 57 15-74 165-228 (298)
390 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.4E-06 5.1E-11 66.1 6.1 59 15-76 162-227 (287)
391 PRK09563 rbgA GTPase YlqF; Rev 98.2 9.6E-06 2.1E-10 62.8 8.8 100 69-178 7-107 (287)
392 TIGR01425 SRP54_euk signal rec 98.2 1.7E-05 3.7E-10 64.2 9.4 86 61-158 182-273 (429)
393 COG1162 Predicted GTPases [Gen 98.2 4.6E-06 9.9E-11 63.8 5.7 58 16-76 166-230 (301)
394 KOG0465 Mitochondrial elongati 98.2 5.6E-06 1.2E-10 68.2 6.4 121 10-136 35-172 (721)
395 PRK13695 putative NTPase; Prov 98.1 8.5E-05 1.8E-09 53.2 11.9 80 82-176 93-172 (174)
396 KOG2484 GTPase [General functi 98.1 2.5E-06 5.3E-11 67.0 4.0 59 11-72 249-307 (435)
397 COG0523 Putative GTPases (G3E 98.1 0.00011 2.3E-09 57.7 12.2 97 62-168 85-192 (323)
398 PRK14722 flhF flagellar biosyn 98.0 2.4E-05 5.2E-10 62.3 7.4 142 13-159 136-316 (374)
399 cd03115 SRP The signal recogni 98.0 3.6E-05 7.7E-10 55.0 7.6 84 61-156 82-171 (173)
400 COG1162 Predicted GTPases [Gen 98.0 0.00011 2.4E-09 56.3 10.2 94 78-175 72-165 (301)
401 KOG3859 Septins (P-loop GTPase 98.0 4.2E-05 9.1E-10 57.6 7.7 119 11-135 39-191 (406)
402 PF00448 SRP54: SRP54-type pro 98.0 4.7E-05 1E-09 55.6 7.5 86 62-159 84-175 (196)
403 cd03114 ArgK-like The function 97.9 4.3E-05 9.4E-10 53.2 6.9 58 61-131 91-148 (148)
404 PRK11889 flhF flagellar biosyn 97.9 5E-05 1.1E-09 60.6 7.6 86 62-159 321-412 (436)
405 KOG0469 Elongation factor 2 [T 97.9 9.6E-05 2.1E-09 60.1 8.6 117 10-132 15-162 (842)
406 PRK11537 putative GTP-binding 97.8 0.0004 8.7E-09 54.5 10.7 96 62-169 91-196 (318)
407 PRK12727 flagellar biosynthesi 97.8 0.00022 4.9E-09 59.1 9.5 135 13-159 349-519 (559)
408 PRK14721 flhF flagellar biosyn 97.8 0.00018 4E-09 58.2 8.7 134 13-159 190-361 (420)
409 PRK00771 signal recognition pa 97.8 0.00051 1.1E-08 56.1 11.2 86 62-159 176-267 (437)
410 TIGR00959 ffh signal recogniti 97.8 0.00025 5.4E-09 57.7 9.4 86 62-159 183-274 (428)
411 COG1419 FlhF Flagellar GTP-bin 97.7 0.00025 5.4E-09 56.6 8.6 156 14-182 203-399 (407)
412 cd02038 FleN-like FleN is a me 97.7 0.00016 3.5E-09 49.8 6.4 107 18-133 4-110 (139)
413 PRK10867 signal recognition pa 97.7 0.00015 3.2E-09 59.1 7.1 86 62-159 184-275 (433)
414 PRK05703 flhF flagellar biosyn 97.7 0.00043 9.2E-09 56.5 9.3 88 61-160 299-393 (424)
415 COG3523 IcmF Type VI protein s 97.7 7.6E-05 1.7E-09 67.0 5.3 110 17-134 128-270 (1188)
416 PF13207 AAA_17: AAA domain; P 97.7 4.3E-05 9.3E-10 51.1 3.0 22 16-37 1-22 (121)
417 KOG1970 Checkpoint RAD17-RFC c 97.7 0.00031 6.8E-09 57.8 8.3 88 88-176 196-283 (634)
418 KOG2485 Conserved ATP/GTP bind 97.6 8E-05 1.7E-09 57.0 4.5 61 11-72 140-206 (335)
419 PRK08118 topology modulation p 97.6 5.1E-05 1.1E-09 54.0 3.1 23 15-37 2-24 (167)
420 PF03215 Rad17: Rad17 cell cyc 97.6 0.00055 1.2E-08 57.2 9.6 22 16-37 47-68 (519)
421 cd00009 AAA The AAA+ (ATPases 97.6 0.00034 7.4E-09 47.8 7.2 24 15-38 20-43 (151)
422 COG0563 Adk Adenylate kinase a 97.6 5.3E-05 1.1E-09 54.4 3.1 23 15-37 1-23 (178)
423 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00054 1.2E-08 43.5 7.5 70 17-99 2-72 (99)
424 PRK14737 gmk guanylate kinase; 97.6 6.3E-05 1.4E-09 54.4 3.1 23 15-37 5-27 (186)
425 PRK12726 flagellar biosynthesi 97.6 0.0003 6.5E-09 56.1 7.1 87 61-159 285-377 (407)
426 PRK07261 topology modulation p 97.5 7.1E-05 1.5E-09 53.4 3.0 22 16-37 2-23 (171)
427 PF05621 TniB: Bacterial TniB 97.5 0.0004 8.7E-09 53.5 7.2 106 10-129 57-189 (302)
428 PF13671 AAA_33: AAA domain; P 97.5 7E-05 1.5E-09 51.6 2.8 21 17-37 2-22 (143)
429 KOG2423 Nucleolar GTPase [Gene 97.5 4.5E-05 9.7E-10 60.2 1.7 85 10-100 303-389 (572)
430 PRK12724 flagellar biosynthesi 97.5 0.00072 1.6E-08 54.6 8.3 133 14-159 223-394 (432)
431 PRK14738 gmk guanylate kinase; 97.5 0.00011 2.4E-09 54.1 3.5 27 11-37 10-36 (206)
432 COG0194 Gmk Guanylate kinase [ 97.5 5.3E-05 1.2E-09 53.9 1.6 47 15-62 5-51 (191)
433 PRK14723 flhF flagellar biosyn 97.5 0.00065 1.4E-08 58.8 8.3 135 15-160 186-359 (767)
434 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00047 1E-08 39.2 5.0 44 85-131 13-58 (58)
435 PF13521 AAA_28: AAA domain; P 97.4 9.7E-05 2.1E-09 52.3 2.5 22 16-37 1-22 (163)
436 PRK12723 flagellar biosynthesi 97.4 0.0023 4.9E-08 51.6 10.5 87 61-159 254-347 (388)
437 TIGR02475 CobW cobalamin biosy 97.4 0.0029 6.4E-08 50.2 11.0 99 62-170 93-223 (341)
438 PF13555 AAA_29: P-loop contai 97.4 0.00017 3.6E-09 42.0 2.9 21 16-36 25-45 (62)
439 PRK06731 flhF flagellar biosyn 97.4 0.00065 1.4E-08 52.0 6.7 87 61-159 154-246 (270)
440 PRK04195 replication factor C 97.4 0.0022 4.8E-08 53.5 10.2 24 14-37 39-62 (482)
441 cd02042 ParA ParA and ParB of 97.4 0.00083 1.8E-08 43.6 6.2 79 17-106 2-81 (104)
442 COG1126 GlnQ ABC-type polar am 97.4 0.00023 4.9E-09 52.0 3.6 26 15-40 29-54 (240)
443 cd02019 NK Nucleoside/nucleoti 97.3 0.0002 4.3E-09 42.9 2.8 21 17-37 2-22 (69)
444 PF00005 ABC_tran: ABC transpo 97.3 0.00022 4.7E-09 48.8 3.1 23 16-38 13-35 (137)
445 COG1116 TauB ABC-type nitrate/ 97.3 0.00021 4.5E-09 53.3 2.9 24 16-39 31-54 (248)
446 PF00004 AAA: ATPase family as 97.3 0.00023 4.9E-09 48.1 3.0 21 17-37 1-21 (132)
447 PF04665 Pox_A32: Poxvirus A32 97.3 0.00024 5.1E-09 53.2 3.0 26 12-37 11-36 (241)
448 PF13238 AAA_18: AAA domain; P 97.2 0.00026 5.6E-09 47.7 2.8 21 17-37 1-21 (129)
449 PRK06217 hypothetical protein; 97.2 0.00027 5.9E-09 51.0 3.0 23 15-37 2-24 (183)
450 PRK14530 adenylate kinase; Pro 97.2 0.00029 6.2E-09 52.3 3.1 20 16-35 5-24 (215)
451 smart00382 AAA ATPases associa 97.2 0.00033 7.1E-09 47.5 3.2 26 15-40 3-28 (148)
452 PRK03839 putative kinase; Prov 97.2 0.00029 6.3E-09 50.7 3.0 22 16-37 2-23 (180)
453 COG3640 CooC CO dehydrogenase 97.2 0.0057 1.2E-07 45.3 9.6 62 63-133 135-198 (255)
454 COG1136 SalX ABC-type antimicr 97.2 0.00035 7.7E-09 51.7 3.4 24 16-39 33-56 (226)
455 TIGR03263 guanyl_kin guanylate 97.2 0.00047 1E-08 49.5 3.9 22 16-37 3-24 (180)
456 PF03205 MobB: Molybdopterin g 97.2 0.00035 7.5E-09 48.1 3.0 22 16-37 2-23 (140)
457 PRK10078 ribose 1,5-bisphospho 97.2 0.00035 7.7E-09 50.5 3.2 22 16-37 4-25 (186)
458 PRK01889 GTPase RsgA; Reviewed 97.2 0.00047 1E-08 55.1 4.1 25 15-39 196-220 (356)
459 TIGR02322 phosphon_PhnN phosph 97.2 0.00034 7.4E-09 50.2 2.8 22 16-37 3-24 (179)
460 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00037 8.1E-09 50.3 2.9 20 16-35 5-24 (188)
461 COG1120 FepC ABC-type cobalami 97.1 0.00037 8.1E-09 52.6 2.9 21 16-36 30-50 (258)
462 cd00071 GMPK Guanosine monopho 97.1 0.00041 8.9E-09 47.6 2.9 21 17-37 2-22 (137)
463 KOG0780 Signal recognition par 97.1 0.00069 1.5E-08 53.5 4.4 106 8-113 95-241 (483)
464 PRK13949 shikimate kinase; Pro 97.1 0.00044 9.5E-09 49.3 3.1 21 16-36 3-23 (169)
465 PRK14532 adenylate kinase; Pro 97.1 0.0004 8.6E-09 50.3 2.9 21 16-36 2-22 (188)
466 TIGR00235 udk uridine kinase. 97.1 0.00054 1.2E-08 50.5 3.5 26 12-37 4-29 (207)
467 PF07728 AAA_5: AAA domain (dy 97.1 0.00049 1.1E-08 47.2 3.1 22 16-37 1-22 (139)
468 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00049 1.1E-08 44.8 2.7 21 15-35 16-36 (107)
469 cd02023 UMPK Uridine monophosp 97.1 0.00043 9.4E-09 50.6 2.8 21 17-37 2-22 (198)
470 cd01120 RecA-like_NTPases RecA 97.1 0.0018 3.9E-08 45.3 5.8 21 17-37 2-22 (165)
471 PRK14531 adenylate kinase; Pro 97.1 0.00052 1.1E-08 49.6 3.0 22 15-36 3-24 (183)
472 PTZ00088 adenylate kinase 1; P 97.1 0.0005 1.1E-08 51.4 3.0 23 14-36 6-28 (229)
473 PF11111 CENP-M: Centromere pr 97.1 0.058 1.3E-06 38.2 13.9 144 10-178 11-154 (176)
474 cd01428 ADK Adenylate kinase ( 97.0 0.00046 1E-08 50.1 2.7 22 16-37 1-22 (194)
475 PRK00625 shikimate kinase; Pro 97.0 0.00058 1.3E-08 48.8 3.0 21 16-36 2-22 (173)
476 cd01130 VirB11-like_ATPase Typ 97.0 0.00059 1.3E-08 49.4 3.1 25 14-38 25-49 (186)
477 COG3839 MalK ABC-type sugar tr 97.0 0.00051 1.1E-08 54.0 2.9 22 17-38 32-53 (338)
478 PRK08233 hypothetical protein; 97.0 0.00054 1.2E-08 49.2 2.9 23 15-37 4-26 (182)
479 PRK05480 uridine/cytidine kina 97.0 0.0006 1.3E-08 50.3 3.2 25 13-37 5-29 (209)
480 PRK02496 adk adenylate kinase; 97.0 0.00062 1.3E-08 49.1 3.2 22 15-36 2-23 (184)
481 TIGR01351 adk adenylate kinase 97.0 0.00047 1E-08 50.9 2.6 21 16-36 1-21 (210)
482 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00055 1.2E-08 49.3 2.9 20 17-36 2-21 (183)
483 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00056 1.2E-08 51.5 2.9 21 16-36 32-52 (254)
484 cd03238 ABC_UvrA The excision 97.0 0.00065 1.4E-08 48.7 3.1 23 13-35 20-42 (176)
485 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00087 1.9E-08 48.1 3.8 26 14-39 25-50 (177)
486 cd03111 CpaE_like This protein 97.0 0.0024 5.3E-08 41.7 5.5 99 21-129 7-106 (106)
487 cd02025 PanK Pantothenate kina 97.0 0.00054 1.2E-08 51.0 2.7 21 17-37 2-22 (220)
488 cd01131 PilT Pilus retraction 97.0 0.002 4.3E-08 47.1 5.6 22 17-38 4-25 (198)
489 cd03110 Fer4_NifH_child This p 97.0 0.0093 2E-07 42.7 9.0 86 60-156 91-176 (179)
490 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0026 5.5E-08 43.3 5.7 22 16-37 24-45 (133)
491 PHA00729 NTP-binding motif con 97.0 0.00077 1.7E-08 50.0 3.3 25 13-37 16-40 (226)
492 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.0007 1.5E-08 50.2 3.2 23 16-38 32-54 (218)
493 PRK10751 molybdopterin-guanine 97.0 0.00084 1.8E-08 47.8 3.4 24 14-37 6-29 (173)
494 KOG3347 Predicted nucleotide k 97.0 0.00053 1.1E-08 47.1 2.1 24 12-35 5-28 (176)
495 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00079 1.7E-08 49.5 3.2 24 15-38 27-50 (205)
496 cd03225 ABC_cobalt_CbiO_domain 96.9 0.0008 1.7E-08 49.6 3.2 23 16-38 29-51 (211)
497 TIGR00960 3a0501s02 Type II (G 96.9 0.00079 1.7E-08 49.9 3.2 23 16-38 31-53 (216)
498 PLN02200 adenylate kinase fami 96.9 0.0011 2.3E-08 49.9 3.8 25 12-36 41-65 (234)
499 TIGR01166 cbiO cobalt transpor 96.9 0.00086 1.9E-08 48.7 3.2 23 16-38 20-42 (190)
500 TIGR03608 L_ocin_972_ABC putat 96.9 0.00086 1.9E-08 49.3 3.2 23 16-38 26-48 (206)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-43 Score=243.65 Aligned_cols=199 Identities=49% Similarity=0.843 Sum_probs=179.4
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
...++.|||+++|+.|||||+|+.|+..+.|.+.+. |.|.++....+.++++++++++|||+|++.++++...++++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 456899999999999999999999999999998887 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 166 (210)
++|+|||+++.+||+.+.. |+.++.+++ ..++|.++||||+|+.+.+.+..++++.++..++.+ ++++||+++.|++
T Consensus 84 Gii~vyDiT~~~SF~~v~~-Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKR-WIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred eEEEEEEcccHHHhhhHHH-HHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 9999999999999999999 999999876 556899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 167 QCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
+.|..|...+.++......... ...+....+.++..+..++||
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~~-~~~~~~ql~~~p~~~~~~~~C 204 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWST-ASLESVQLKGTPVKKSNGGCC 204 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCCc-CCCCceeeCCCCcccccCCCC
Confidence 9999999999988888777664 223333333345556666788
No 2
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=228.48 Aligned_cols=201 Identities=68% Similarity=1.083 Sum_probs=187.5
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|+|||+|+-++..+.|.+..+ +.|.++....+.+++.++++.+|||+|++.++.+...+++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 456788999999999999999999999999998888 7999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++|+|||++.+++|..+.. |+.++..|..++++..++|+||+|.+..+.++.++...+++++++.++++||++.+|+..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 9999999999999999966 999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 168 CFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
.|+.+++++++-+.+.+.++...+..+..+...+....-++||
T Consensus 165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C 207 (209)
T KOG0080|consen 165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCC 207 (209)
T ss_pred HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCcc
Confidence 9999999999999999999999888888755554445556687
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-40 Score=228.43 Aligned_cols=196 Identities=40% Similarity=0.662 Sum_probs=170.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|+.++|||||+.|+..++|.+. .+|+|.-+....+.+++..+++.+|||+|++.|.++.+.++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999886 459999999999999999999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|||+++.+||..++. |...+.+... +++.+.+||||+|+.+.+.+..+++..++.+.+..++++||+++.|++++|.
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 9999999999999999 9999988654 7788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 171 ELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
.|.+.+...............+.......+ ++....+||
T Consensus 161 ~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C 199 (200)
T KOG0092|consen 161 AIAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCC 199 (200)
T ss_pred HHHHhccCccccccccccccccceecccCC-CCcCcCCcC
Confidence 999999887776654222211211111111 455677777
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-39 Score=221.74 Aligned_cols=172 Identities=38% Similarity=0.619 Sum_probs=160.3
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
...-+.+|++|+|+.++||||||.|++.+.|...|. |+|.++-...+.+.+.++++++|||+|++.+..+.+.+++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 344566999999999999999999999999988776 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++|+|||+++..||++..+ |+..+.......++.+++||||.||.+++.+..++....++++++.|+++||+.|.||..
T Consensus 97 vaviVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 9999999999999999999 998888766555689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028353 168 CFEELVLKILDTPS 181 (210)
Q Consensus 168 ~~~~l~~~~~~~~~ 181 (210)
+|..|..++.....
T Consensus 176 lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 176 LFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHhccCccc
Confidence 99998888876654
No 5
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.2e-38 Score=232.56 Aligned_cols=195 Identities=34% Similarity=0.585 Sum_probs=171.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|.++.+...+ ++.+.++....+.++ +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999886654 477777777777777 7889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCCCHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 168 (210)
||++++++|+.+.. |...+.... ...++|++||+||.|+...+.+..+++..++...+ .+++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999987 777776432 23578999999999997667778888999999998 68999999999999999
Q ss_pred HHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 169 FEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
|.++++.+.+............+.+....++..+.++.+|||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999999998888888888777877777777888888999
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-38 Score=222.31 Aligned_cols=172 Identities=53% Similarity=0.929 Sum_probs=163.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+.++.+||+++|+++||||+|+.++..+.|...+. |.|.++....+.+++..+.+++|||+|++.+..+...++++++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 377899999999999999999999999999987777 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++++|||+++..||+++.. |+..+..+. ..++|.++||||+|+...+.+..+.++.++.++|++++|+||++|.||++
T Consensus 87 gi~LvyDitne~Sfeni~~-W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRN-WIKNIDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred eeEEEEEccchHHHHHHHH-HHHHHHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 9999999999999999999 999999875 44899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028353 168 CFEELVLKILDTPSL 182 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~ 182 (210)
+|-.|.+.++++...
T Consensus 165 aF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 165 AFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHhhcch
Confidence 999999999874443
No 7
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=229.99 Aligned_cols=210 Identities=70% Similarity=1.161 Sum_probs=186.2
Q ss_pred CCCCcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028353 1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
|.+...+..+....+||+|+|++|||||||+++|.++.+....++.+.++....+.+++..+.+.+||+||++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 80 (211)
T PLN03118 1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS 80 (211)
T ss_pred CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 44555666677788999999999999999999999998877767888878777788888889999999999999999999
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
.+++.+|++|+|||++++++|..+...|...+..+....+.|+++|+||+|+.....+..++...++...+++++++||+
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk 160 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAK 160 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999988788777765555678999999999998777777788888888889999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 161 TRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++.|++++|.+|.+.+.+.+...+++....+++..++....++..+.+||
T Consensus 161 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
T PLN03118 161 TRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCC 210 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCC
Confidence 99999999999999999999999899888899999998888888888887
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.7e-37 Score=226.74 Aligned_cols=194 Identities=43% Similarity=0.739 Sum_probs=160.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+.|+++|+.|||||||++++..+.|...+. +.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 368999999999999999999999977654 8888888788888999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCCCHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
|++++++|+.+.. |+..+.... ..++|+++||||+|+...+.+..+++.+++... ++.+++|||++|.||+++|.++
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999987 888776642 457999999999999877888888888898875 7889999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccc------cCCCCccCcccCCCC
Q 028353 173 VLKILDTPSLLAEGSKGLKKNIF------KQKPPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 210 (210)
++.+.+........++....-.. -....+.+..+.+||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (202)
T cd04120 159 VDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC 202 (202)
T ss_pred HHHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence 99998764443322222221111 112223467788998
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1e-36 Score=220.66 Aligned_cols=167 Identities=39% Similarity=0.681 Sum_probs=150.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+.+||+++|+.|||||||+.++..+.+...+. +.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 4577999999999999999999999988866554 777777777788899999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
|+|||++++.+|+.+.. |+..+.... +++|++|||||.|+...+.+..++++.+++..++++++|||++|.||+++|
T Consensus 83 llVfD~t~~~Sf~~~~~-w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 83 ILVYDITNRWSFDGIDR-WIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999987 888887643 579999999999998777888999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 028353 170 EELVLKILDTP 180 (210)
Q Consensus 170 ~~l~~~~~~~~ 180 (210)
.++.+.+..+.
T Consensus 160 ~~l~~~i~~~~ 170 (189)
T cd04121 160 TELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHhc
Confidence 99999886533
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4e-37 Score=211.54 Aligned_cols=172 Identities=38% Similarity=0.668 Sum_probs=157.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.+...+||+++|++|+|||||++++.+.+|...+. |+|.++-...+.+++..+-+++|||+|++.++++...+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 34678999999999999999999999999988777 99999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCC---CCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhC-CeEEEEccCCC
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ---DCIKLLVGNKVDKESE--RVVTKKEGINFAREYG-CLFIECSAKTR 162 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 162 (210)
.++|||.+++.+|+.+.. |..++..++... ..|+||+|||+|++.. +.+....++.|+...| +|||++|||+.
T Consensus 85 Cvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred EEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 999999999999999999 888887665533 3799999999999663 7889999999999876 78999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 028353 163 VNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~ 182 (210)
.||++.|..+.+.++.....
T Consensus 164 ~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ccHHHHHHHHHHHHHhccch
Confidence 99999999999999988875
No 11
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-37 Score=210.65 Aligned_cols=169 Identities=49% Similarity=0.866 Sum_probs=158.7
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+.+|++++|+.|||||+|+.+++...|.+.+. |.|.++....+.+++..+++++|||+|++.+.+....+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 4678999999999999999999999999988877 999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||+++.++|..+.. |+..++.+. ..+..++++|||+||...+.+..++++.|++++|..++++||+++.|++++|
T Consensus 83 lLVydit~r~sF~hL~~-wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTS-WLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEEEccchhhHHHHHH-HHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999999 999998754 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028353 170 EELVLKILDTPS 181 (210)
Q Consensus 170 ~~l~~~~~~~~~ 181 (210)
......+++..+
T Consensus 161 ~nta~~Iy~~~q 172 (216)
T KOG0098|consen 161 INTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHHHH
Confidence 998887765443
No 12
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.6e-35 Score=216.97 Aligned_cols=196 Identities=44% Similarity=0.768 Sum_probs=162.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 346799999999999999999999999886544 4777777777778888889999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||++++++|..+.. |+..+... ....|++||+||+|+.....+..+++..++...+++++++||+++.|++++|
T Consensus 83 ilv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 83 IVVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159 (199)
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHH
Confidence 99999999999999987 77777653 3568999999999998777777888888998889999999999999999999
Q ss_pred HHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 170 EELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
+++...+++....................+++. ++++.||
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 199 (199)
T cd04110 160 NCITELVLRAKKDNLAKQQQQQQNDVVKLPKNS-KRKKRCC 199 (199)
T ss_pred HHHHHHHHHhhhccCcccccCCccccCccchhc-cccccCC
Confidence 999999987766554444444444444444433 4556677
No 13
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.3e-36 Score=217.94 Aligned_cols=182 Identities=34% Similarity=0.522 Sum_probs=153.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++.++.+...+. +.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 5899999999999999999999988865554 555444 45677888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
||++++++|+.+.. |...+.......++|+++|+||.|+.....+..+++..++...+.+++++||+++.|++++|.++
T Consensus 84 ~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 84 YSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 77766655445689999999999997767777778888888889999999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++.+.+..+.. .+++.+++++++||
T Consensus 163 ~~~l~~~~~~~-------------~~~~~~~~~~~~~~ 187 (189)
T PTZ00369 163 VREIRKYLKED-------------MPSQKQKKKGGLCL 187 (189)
T ss_pred HHHHHHHhhcc-------------chhhhhhccCCeee
Confidence 99986543211 34455566778887
No 14
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-35 Score=216.27 Aligned_cols=189 Identities=41% Similarity=0.771 Sum_probs=158.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||++++.++.+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 334677677666678888899999999999999988888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
+|+++.++++.+.. |+..+.... ..++|+++|+||.|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988 887777643 3478999999999997666677778888888899999999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
.+.+.+.... .......+.+.++.+.+ ++++||
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~ 191 (191)
T cd04112 159 AKELKHRKYE-QPDEGKFKISDYVTKQK----KISRCC 191 (191)
T ss_pred HHHHHHhccc-cCCCCcEEeccccCccc----ccCCCC
Confidence 9999888644 33333444555655555 888999
No 15
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=205.08 Aligned_cols=167 Identities=51% Similarity=0.833 Sum_probs=157.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
-+..++.+|+|++|+|||+|+.++..+.|+..|. +.|.++....+.++|..+++.|||++|++.+..+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 3456889999999999999999999999999888 999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||.++.+||.++.. |+..++.. .+.+|-|+||||.|.++.+.+..++++.|+..+++.+|++|+++..|++.+|
T Consensus 85 ~vVYDVTn~ESF~Nv~r-WLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKR-WLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred EEEEECcchhhhHhHHH-HHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 99999999999999999 99999864 5579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 028353 170 EELVLKILDTP 180 (210)
Q Consensus 170 ~~l~~~~~~~~ 180 (210)
.-|.+.+++..
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 16
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.8e-36 Score=220.04 Aligned_cols=187 Identities=33% Similarity=0.538 Sum_probs=150.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|.+|||||||+++|..+.|....++.+..+....+ ..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999987666677766544433 56789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------CceecHHHHHHHHHHhC----
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVVTKKEGINFAREYG---- 151 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~---- 151 (210)
++++.+|..+..+|...... ...++|++||+||+|+.. .+.+..+++..++.+.+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 99999999998855554432 245689999999999965 56778889999999876
Q ss_pred ----------CeEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 152 ----------CLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 152 ----------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++|++|||++|.||+++|.++++.++.-...... .......-...++.+++|.+||
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA---EANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh---hhhhhhccccCCCcccCCCCCC
Confidence 6899999999999999999999988653332222 1122223334555688999999
No 17
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.3e-35 Score=216.05 Aligned_cols=185 Identities=35% Similarity=0.543 Sum_probs=149.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|.+|||||||+++|..+.+...+. +.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 68999999999999999999988876554 554333 4456678888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
+++..+|+.+.. |+..+..... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999988 7666655332 2578999999999997777777777888888889999999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++.+.++...- .+....+...+.|++..||
T Consensus 159 ~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 159 VRALRQQRQGG--------QGPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHhhccc--------CCCcCCCCCcccccccCce
Confidence 99886555442 1223444444455555565
No 18
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=8.4e-35 Score=215.54 Aligned_cols=168 Identities=45% Similarity=0.806 Sum_probs=149.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+.++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 3557899999999999999999999998886544 588888888888889999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 88 ~ilv~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999887 887776643 457999999999999877778888889999889999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028353 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
|++++..+.+.
T Consensus 166 f~~l~~~i~~~ 176 (216)
T PLN03110 166 FQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999988774
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.8e-35 Score=210.26 Aligned_cols=165 Identities=38% Similarity=0.597 Sum_probs=145.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 4799999999999999999999999875544 555434 44577788899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..+++..++++++|||+++.||+++|.++
T Consensus 81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999987 77777665445679999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHcCC
Q 028353 173 VLKILDTP 180 (210)
Q Consensus 173 ~~~~~~~~ 180 (210)
++.+.+..
T Consensus 160 ~~~~~~~~ 167 (172)
T cd04141 160 VREIRRKE 167 (172)
T ss_pred HHHHHHhc
Confidence 99887644
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=9e-35 Score=207.37 Aligned_cols=163 Identities=53% Similarity=0.877 Sum_probs=146.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++.++.+...++ +.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999999998876665 777777777788889899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
||++++.+|+.+.. |+..+... ...+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999988 77766553 34568999999999998877788888999999999999999999999999999999
Q ss_pred HHHHHc
Q 028353 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+++
T Consensus 160 ~~~~~~ 165 (166)
T cd04122 160 AKKIYQ 165 (166)
T ss_pred HHHHhh
Confidence 988865
No 21
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-35 Score=206.25 Aligned_cols=176 Identities=47% Similarity=0.793 Sum_probs=163.7
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY 83 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (210)
.......++.|||+++|++++|||-|+.|+..++|...+. |.|.++....+.++++.+..+||||+|++.|++....++
T Consensus 5 ~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY 84 (222)
T KOG0087|consen 5 RDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY 84 (222)
T ss_pred cCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh
Confidence 3455778999999999999999999999999999987776 999999999999999999999999999999999999999
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
+++.++++|||++...+|+.+.. |+.+++.+. +.++++++||||+||...+.+..++++.++...+..++++||.++.
T Consensus 85 rgAvGAllVYDITr~~Tfenv~r-WL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred cccceeEEEEechhHHHHHHHHH-HHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence 99999999999999999999888 999999865 5689999999999999989999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 028353 164 NVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~ 182 (210)
|++..|..++..+.+.-+.
T Consensus 163 NVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765544
No 22
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.1e-34 Score=209.15 Aligned_cols=164 Identities=27% Similarity=0.536 Sum_probs=143.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
+...+||+++|++|||||||++++..+.|...+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 3567899999999999999999999999876654 666544 45678899999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEEE
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIE 156 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 156 (210)
++|||++++.+|+.+...|...+.... ++.|+++||||.|+.+ .+.+..++++++++..++ +|++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 158 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 158 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998544988887753 5789999999999854 345888999999999996 8999
Q ss_pred EccCCCCC-HHHHHHHHHHHHH
Q 028353 157 CSAKTRVN-VQQCFEELVLKIL 177 (210)
Q Consensus 157 ~Sa~~~~~-i~~~~~~l~~~~~ 177 (210)
|||+++.| |+++|..+++.++
T Consensus 159 ~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 159 CSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCcCCCCCCHHHHHHHHHHHHh
Confidence 99999998 9999999998764
No 23
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=196.19 Aligned_cols=176 Identities=48% Similarity=0.832 Sum_probs=162.1
Q ss_pred CcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028353 4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY 82 (210)
Q Consensus 4 ~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (210)
..+..++.++.+|++++|...+|||+|+.++.+..|...+- +.|..+....+.-+..++.+++|||+|++.+..+...+
T Consensus 11 ~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay 90 (193)
T KOG0093|consen 11 KDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY 90 (193)
T ss_pred cccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH
Confidence 34556777899999999999999999999999999866554 99999999988888899999999999999999999999
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (210)
+++++++|++||+++.+||..+.. |...+..+ ...+.|+|+|+||+|+++++.+..+.+++++..+|+.+|++||+.+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqd-w~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQD-WITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN 168 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHH-HHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence 999999999999999999999999 99999886 4678999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 028353 163 VNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~ 181 (210)
.|++++|..+++.+-+..+
T Consensus 169 inVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 169 INVKQVFERLVDIICDKMS 187 (193)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 9999999999998865543
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.8e-34 Score=206.87 Aligned_cols=161 Identities=32% Similarity=0.650 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|+|||+|+.++..+.|...+ +|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 79999999999999999999999997655 4776555 455778899999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----------eecHHHHHHHHHHhCC-eEEEEccCCC
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----------VVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (210)
|+++++||+.+...|...+.... .++|++|||||+|+.+.+ .+..+++..+++..++ ++++|||+++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 99999999998544888887653 479999999999996542 4778899999999998 5999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028353 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
.||+++|..+++.+++
T Consensus 159 ~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 159 QNVKAVFDAAIKVVLQ 174 (176)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998744
No 25
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-34 Score=212.43 Aligned_cols=169 Identities=44% Similarity=0.771 Sum_probs=147.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+.+||+++|++|||||||+++|.++.+...+. +.+.++....+.+ ++..+.+.+||++|++.+...+..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 35899999999999999999999998876554 7777777666666 467889999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|||++++.+|+.+.. |+..+.........|++||+||.|+.....+..+++..+++.++++++++||+++.|++++|.
T Consensus 81 lv~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 81 LVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFE 159 (211)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988 887776654445688999999999987777888888999999999999999999999999999
Q ss_pred HHHHHHHcCCCc
Q 028353 171 ELVLKILDTPSL 182 (210)
Q Consensus 171 ~l~~~~~~~~~~ 182 (210)
+|.+.+.+....
T Consensus 160 ~l~~~~~~~~~~ 171 (211)
T cd04111 160 LLTQEIYERIKR 171 (211)
T ss_pred HHHHHHHHHhhc
Confidence 999988766443
No 26
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.9e-34 Score=212.74 Aligned_cols=165 Identities=35% Similarity=0.550 Sum_probs=144.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|.++.+...+. +.+.+++...+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999998876554 888787777777754 578999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
||++++++|+.+.. |...+...... .+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999987 88888765432 4578999999999987777888888999999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028353 171 ELVLKILDTP 180 (210)
Q Consensus 171 ~l~~~~~~~~ 180 (210)
++...+.+..
T Consensus 160 ~l~~~l~~~~ 169 (215)
T cd04109 160 QLAAELLGVD 169 (215)
T ss_pred HHHHHHHhcc
Confidence 9999998753
No 27
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.2e-34 Score=208.51 Aligned_cols=164 Identities=49% Similarity=0.794 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.++.+.. +.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999999876 4457787777777888888999999999999999989999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+..+. ....|+++|+||.|+.+...+..+++..++...+++++++||+++.|++++|.+++
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988 888777643 34589999999999987777778888888888899999999999999999999999
Q ss_pred HHHHcCC
Q 028353 174 LKILDTP 180 (210)
Q Consensus 174 ~~~~~~~ 180 (210)
+.+.++.
T Consensus 159 ~~~~~~~ 165 (188)
T cd04125 159 KLIIKRL 165 (188)
T ss_pred HHHHHHh
Confidence 9997654
No 28
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.6e-34 Score=207.57 Aligned_cols=167 Identities=38% Similarity=0.714 Sum_probs=145.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccchh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG----------GKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
++.+||+++|++|||||||++++.++.+...+. +.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 367999999999999999999999998866544 77766665555543 4578999999999999999999
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
.+++++|++++|||+++++++..+.. |+..+.......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999988 88888765555678999999999998777788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 028353 161 TRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (210)
++.|++++|+++++.++++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988654
No 29
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.9e-34 Score=205.82 Aligned_cols=161 Identities=25% Similarity=0.544 Sum_probs=139.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++.++.|...+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 3799999999999999999999998876554 665544 45677889999999999999999998889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEEEEcc
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSA 159 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa 159 (210)
||+++++||+.+...|...+.... ++.|+++||||.|+.+ .+.+..+++.+++...++ +|++|||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 157 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA 157 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence 999999999997544988887753 5789999999999954 245788899999999997 7999999
Q ss_pred CCCCC-HHHHHHHHHHHHH
Q 028353 160 KTRVN-VQQCFEELVLKIL 177 (210)
Q Consensus 160 ~~~~~-i~~~~~~l~~~~~ 177 (210)
++|.+ |+++|..+++..+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999999665
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.7e-34 Score=210.83 Aligned_cols=167 Identities=23% Similarity=0.489 Sum_probs=145.0
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....+||+++|++|||||+|+++|..+.|...+. +.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 34567999999999999999999999998876654 666555 4457889999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEE
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFI 155 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 155 (210)
+|+|||++++.+|+.+...|...+.... ++.|+++||||+|+.. .+.+..+++++++...++ .|+
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 9999999999999986444888887643 4689999999999864 256788899999999998 699
Q ss_pred EEccCCCC-CHHHHHHHHHHHHHcC
Q 028353 156 ECSAKTRV-NVQQCFEELVLKILDT 179 (210)
Q Consensus 156 ~~Sa~~~~-~i~~~~~~l~~~~~~~ 179 (210)
+|||++|. ||+++|..++..+++.
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 8999999999988764
No 31
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.2e-34 Score=207.66 Aligned_cols=162 Identities=28% Similarity=0.537 Sum_probs=140.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||+.++..+.|...+ ++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999986555 4666544 44567889999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CeEEEEcc
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSA 159 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa 159 (210)
||++++.+|+.+...|...+... ..++|+++||||.|+.+.. .+..+++..++...+ .+++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999976688777654 3579999999999996442 356678889999888 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 028353 160 KTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (210)
++|.|++++|.++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998854
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.4e-34 Score=203.52 Aligned_cols=165 Identities=55% Similarity=0.943 Sum_probs=146.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
++.+||+++|++|+|||||++++.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 357999999999999999999999998876544 7777777777788888899999999999998888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|||++++.+|..+.. |+..+... ...++|+++|+||.|+.+...+..+++..++...+++++++||+++.|++++|.
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 81 LVYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFF 158 (167)
T ss_pred EEEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988 88888764 246789999999999987777777888889998999999999999999999999
Q ss_pred HHHHHHHc
Q 028353 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
++.+.+.+
T Consensus 159 ~i~~~~~~ 166 (167)
T cd01867 159 TLAKDIKK 166 (167)
T ss_pred HHHHHHHh
Confidence 99998865
No 33
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=197.12 Aligned_cols=204 Identities=34% Similarity=0.625 Sum_probs=170.6
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY 83 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (210)
+.+...+...||++++|...+|||||+-|++.++|..... +....+....+.+.+....+.+|||+|++.|.++-+.++
T Consensus 4 ~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY 83 (218)
T KOG0088|consen 4 ETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY 83 (218)
T ss_pred cccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence 3455667889999999999999999999999999976554 777777788888899999999999999999999999999
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
+..+++++|||++|++||+.++. |..+++... ...+.+++|+||+|+++++.+..++++.++..-|..|+++||+++.
T Consensus 84 RgSnGalLVyDITDrdSFqKVKn-WV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~ 161 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKN-WVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNV 161 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHH-HHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccccccc
Confidence 99999999999999999999999 888887643 4457889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcccccc-----cCccc---ccccCCCCccCcccCCCC
Q 028353 164 NVQQCFEELVLKILDTPSLLAEGS-----KGLKK---NIFKQKPPEADAAASGCC 210 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~ 210 (210)
||.++|..+...+++..+.....- .+... ....+..++.+...++||
T Consensus 162 Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC 216 (218)
T KOG0088|consen 162 GISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCC 216 (218)
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCcc
Confidence 999999999998887664433222 12211 123333445566667798
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.7e-33 Score=207.96 Aligned_cols=166 Identities=22% Similarity=0.503 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+|+|++|||||||+.+|..+.|+..+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 799999999999999999999999876554 666554 356788999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccC
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (210)
|++++++|+.+...|...+... ..++|+++||||+|+... ..+..+++..+++..++ +|++|||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999977688777653 467999999999999542 13677889999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHcCCCcc
Q 028353 161 TRVN-VQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 161 ~~~~-i~~~~~~l~~~~~~~~~~~ 183 (210)
++.+ |+++|..+..+.+.+....
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~~ 182 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHRQ 182 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCCc
Confidence 9985 9999999999887755543
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.1e-33 Score=201.75 Aligned_cols=163 Identities=32% Similarity=0.601 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|+++.+...+. +.+.++....+..++..+.+++||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999998866554 7777777777888889999999999999988889999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccC----CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTN----QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
|++++.++..+.. |+..+...... .+.|+++|+||+|+........++...++...+++++++||+++.|++++|
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999887 88877765443 568999999999997666677888888888889999999999999999999
Q ss_pred HHHHHHHHc
Q 028353 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
+++++.+++
T Consensus 160 ~~l~~~l~~ 168 (168)
T cd04119 160 QTLFSSIVD 168 (168)
T ss_pred HHHHHHHhC
Confidence 999998864
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1e-33 Score=201.12 Aligned_cols=160 Identities=39% Similarity=0.680 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.+...+. +.+ ..+...+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 799999999999999999999988866554 443 444566778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++.+++.+.. |...+.......++|+++|+||+|+...+.+..++...++..++.+++++||+++.|++++|.+++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999888 777776655556799999999999977667777777888888889999999999999999999998
Q ss_pred HHH
Q 028353 174 LKI 176 (210)
Q Consensus 174 ~~~ 176 (210)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 765
No 37
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.4e-33 Score=204.95 Aligned_cols=166 Identities=30% Similarity=0.536 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|.++.+...+. +.+..+. ..+... +..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998876554 5554443 334444 6788999999999999998888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----eecHHHHHHHHHHhCC-eEEEEccCCCCCHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----VVTKKEGINFAREYGC-LFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 167 (210)
||++++.+|+.+...|+..+..+ ..++|+++|+||.|+.... .+..+++..++...+. +++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 99999999999976687777653 3578999999999985432 4567788899999988 899999999999999
Q ss_pred HHHHHHHHHHcCCCcc
Q 028353 168 CFEELVLKILDTPSLL 183 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~ 183 (210)
+|..+++.+++.....
T Consensus 158 ~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 158 VFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999997665443
No 38
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2e-33 Score=200.33 Aligned_cols=163 Identities=56% Similarity=0.928 Sum_probs=144.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 589999999999999999999998886654 3777777777778888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
||+++++++..+.. |+..+.... ..+.|+++|+||.|+.....+..+++..++...+++++++||++|.|++++|.++
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 99999999999988 888777643 3568999999999998777788888899999999999999999999999999999
Q ss_pred HHHHHc
Q 028353 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
++.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01869 160 AREIKK 165 (166)
T ss_pred HHHHHh
Confidence 998753
No 39
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2e-33 Score=199.94 Aligned_cols=162 Identities=41% Similarity=0.680 Sum_probs=139.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.+...++ +.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 3799999999999999999999888765544 555443 45677788889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
||+++..+++.+.. |...+.......+.|+++|+||+|+.....+..+++..++...+++++++||+++.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 80 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 66666554455779999999999998777777777888888889999999999999999999999
Q ss_pred HHHHH
Q 028353 173 VLKIL 177 (210)
Q Consensus 173 ~~~~~ 177 (210)
++.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 98764
No 40
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.7e-33 Score=198.85 Aligned_cols=162 Identities=50% Similarity=0.851 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.++++...+ ++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999986654 47776776666777888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|.+++++++.+.. |+..+.... ..+.|+++|+||+|+.+.+....++...++...+.+++++||+++.|++++|+++.
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999988 888776532 34689999999999987777777888888888899999999999999999999999
Q ss_pred HHHHc
Q 028353 174 LKILD 178 (210)
Q Consensus 174 ~~~~~ 178 (210)
..+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87643
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.3e-33 Score=199.06 Aligned_cols=159 Identities=46% Similarity=0.848 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|+|||||++++..+.+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999886654 47777777777888888899999999999999989999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++++|+.+.. |+..+.... ..+.|+++|+||.|+...+.+..+++..+++..+++++++||+++.|++++|.+|.
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988 888776543 34689999999999987777888899999998999999999999999999999998
Q ss_pred HH
Q 028353 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 65
No 42
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.6e-33 Score=201.26 Aligned_cols=160 Identities=30% Similarity=0.559 Sum_probs=136.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.|...+ ++.+..+. ..+.+++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999986544 46665553 4567788889999999999999999998899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEEEcc
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIECSA 159 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 159 (210)
||++++++|+.+...|...+... ..++|++||+||.|+... +.+..+++..++...+ +.+++|||
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 99999999999976688888764 357899999999998543 4566778888988887 68999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028353 160 KTRVNVQQCFEELVLKI 176 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~ 176 (210)
++|.|++++|+.+++..
T Consensus 158 ~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 158 LTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998854
No 43
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.9e-33 Score=199.68 Aligned_cols=160 Identities=45% Similarity=0.754 Sum_probs=148.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|+++||||||+++|.++.+...+. +.+.+.....+.+++..+.+.+||++|++.+......+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999877665 77788888999999999999999999999999888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
+++++|++.+.. |+..+..... .+.|++|||||.|+.+.+.+..++++.++..++.+|+++||+++.|+.++|..+++
T Consensus 81 ~~~~~S~~~~~~-~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 81 VTDEESFENLKK-WLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TTBHHHHHTHHH-HHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999997 9999887654 56899999999999887889999999999999999999999999999999999999
Q ss_pred HHH
Q 028353 175 KIL 177 (210)
Q Consensus 175 ~~~ 177 (210)
.++
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 44
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=9.3e-33 Score=201.61 Aligned_cols=163 Identities=34% Similarity=0.580 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+|+|++|+|||||+++|.++.+.. +.++.+.++....+.+++..+.+.+||++|...+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 445777777777788899999999999999999888888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
||+++..+++.+.. |+..+... ..++|+++|+||.|+... ..+..+++..++...+++++++||+++.|++++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999877 88777653 347899999999998532 344556777888888899999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028353 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|+++.+.+.+..
T Consensus 158 ~~~i~~~~~~~~ 169 (193)
T cd04118 158 FQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHhc
Confidence 999999997654
No 45
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6e-33 Score=201.83 Aligned_cols=163 Identities=31% Similarity=0.510 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|||||||+++|..+.+...+. +.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 389999999999999999999999876554 555444 345667888899999999999999888888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CeEEEEccC
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 160 (210)
|++++.+|+.+...|+..+... ..+.|+++|+||+|+.... .+..+++..++...+ +++++|||+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 9999999999876588887754 3578999999999996543 245666778887776 689999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 028353 161 TRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~ 180 (210)
+|.|++++|.++.+.++...
T Consensus 158 ~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 158 LNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred cCCCHHHHHHHHHHHHhccc
Confidence 99999999999999997444
No 46
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.4e-34 Score=192.03 Aligned_cols=170 Identities=45% Similarity=0.792 Sum_probs=154.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.+.++++++|++-+|||+|+++++.+++++-+. |.|.+++...+.+ ++..+++++|||+|++.++++...++++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 578999999999999999999999999987665 9999888776665 77889999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
++|||+++.+||+.+.. |..+...+...+. +.+.+||+|+|+...+.+..++++.++..+|..++++||++|.|+++.
T Consensus 86 llvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred EEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 99999999999999999 9888887776454 455689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028353 169 FEELVLKILDTPSL 182 (210)
Q Consensus 169 ~~~l~~~~~~~~~~ 182 (210)
|+.+.+.++....+
T Consensus 165 F~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999987665444
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.3e-33 Score=205.78 Aligned_cols=165 Identities=33% Similarity=0.530 Sum_probs=142.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||++++..+.+...+ ++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 77899999999999999999999988886654 48888888777777888899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|||++++.++..+.. |+..+... ..+.|+++||||+|+... .+..+++ .++...+++|++|||++|.|++++|.
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRV--CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence 9999999999999987 88888764 357999999999998533 3334444 67777889999999999999999999
Q ss_pred HHHHHHHcCCC
Q 028353 171 ELVLKILDTPS 181 (210)
Q Consensus 171 ~l~~~~~~~~~ 181 (210)
++++.+.+...
T Consensus 166 ~l~~~~~~~~~ 176 (219)
T PLN03071 166 YLARKLAGDPN 176 (219)
T ss_pred HHHHHHHcCcc
Confidence 99999976643
No 48
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=5.5e-33 Score=197.67 Aligned_cols=162 Identities=40% Similarity=0.654 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||++++.++.+...+.....+.......+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887655522233445566778888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
++++++++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++++
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 999999999988 6666655445567999999999999877777778888888888999999999999999999999998
Q ss_pred HHH
Q 028353 175 KIL 177 (210)
Q Consensus 175 ~~~ 177 (210)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=9.2e-33 Score=197.35 Aligned_cols=165 Identities=50% Similarity=0.872 Sum_probs=146.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
++.+||+++|++|||||||++++.++.+...+. +.+.++....+..++....+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 356899999999999999999999988866554 7777777777888888899999999999999888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|||++++.++..+.. |+..+..+. .++.|+++|+||.|+.....+..+++..++...+++++++||+++.|++++|.
T Consensus 82 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 82 LVYDITRRETFNHLTS-WLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988 888776643 46799999999999977777788888889998999999999999999999999
Q ss_pred HHHHHHHc
Q 028353 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
++.+.+++
T Consensus 160 ~~~~~~~~ 167 (168)
T cd01866 160 NTAKEIYE 167 (168)
T ss_pred HHHHHHHh
Confidence 99998864
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=7.5e-33 Score=198.71 Aligned_cols=158 Identities=30% Similarity=0.540 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+.++..+.+...+. +.+ ..+...+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 799999999999999999999998866554 554 334455677888999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccC
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (210)
|++++++|..+...|...+... ..++|+++|+||.|+.+. ..+..+++..++.+++. ++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999976688877654 357999999999999543 24678888999999985 89999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVLK 175 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (210)
+|.|++++|..+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 51
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=6.9e-33 Score=197.00 Aligned_cols=162 Identities=37% Similarity=0.584 Sum_probs=138.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.+||+++|++|+|||||++++..+.+...+.+....+....+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999988766553333455667778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++.++.++.. |...+.......++|+++|+||+|+.....+..++...++...+++++++||+++.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999988 766666544446799999999999976666666677888888889999999999999999999998
Q ss_pred HHH
Q 028353 174 LKI 176 (210)
Q Consensus 174 ~~~ 176 (210)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 52
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2e-32 Score=202.01 Aligned_cols=166 Identities=48% Similarity=0.845 Sum_probs=146.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.+.+||+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998886654 47777777777888888899999999999998888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|||++++.++..+.. |+..+.... ....|+++|+||.|+...+.+..+++..+++.++++++++||+++.|++++|.
T Consensus 84 lv~D~~~~~s~~~l~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 84 LVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEECCcHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999887 766665432 35789999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHcC
Q 028353 171 ELVLKILDT 179 (210)
Q Consensus 171 ~l~~~~~~~ 179 (210)
++++.+++.
T Consensus 162 ~l~~~~~~~ 170 (210)
T PLN03108 162 KTAAKIYKK 170 (210)
T ss_pred HHHHHHHHH
Confidence 999988764
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-32 Score=196.49 Aligned_cols=161 Identities=45% Similarity=0.806 Sum_probs=141.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+.+||+++|++|+|||||++++..+.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 57999999999999999999999988876554 66666777777888888999999999999999889999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 170 (210)
|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+....+++..+++..+. .++++||++|.|++++|.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 999999999999887 88877653 345789999999999987777777888888888876 689999999999999999
Q ss_pred HHHHH
Q 028353 171 ELVLK 175 (210)
Q Consensus 171 ~l~~~ 175 (210)
++.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99875
No 54
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.2e-32 Score=198.88 Aligned_cols=163 Identities=28% Similarity=0.572 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.|...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999887654 48888887777888999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-----ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
|++++.++..+.. |+..+.... ....| ++|+||+|+.. ......+++..++..++++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999987 888776543 33466 67899999842 1112345677888888999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028353 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|.++.+.+++.+
T Consensus 158 f~~l~~~l~~~~ 169 (182)
T cd04128 158 FKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHhcC
Confidence 999999997644
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.9e-32 Score=195.34 Aligned_cols=161 Identities=34% Similarity=0.600 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++++.+.+...+ ++.+.++....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988876544 47777777777777888899999999999998888888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+..... ++|+++|+||+|+... ... .+...+....+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~--~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCG--NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCC--CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 9999999999987 8888876532 7999999999999633 222 334566777788999999999999999999999
Q ss_pred HHHHcCC
Q 028353 174 LKILDTP 180 (210)
Q Consensus 174 ~~~~~~~ 180 (210)
+.+++.+
T Consensus 156 ~~~~~~~ 162 (166)
T cd00877 156 RKLLGNP 162 (166)
T ss_pred HHHHhcc
Confidence 9997644
No 56
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=186.62 Aligned_cols=172 Identities=42% Similarity=0.797 Sum_probs=157.8
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
+.....+||+++|..|+|||+|+++++.+-|++... +.|.++-...+.+++.++++++|||+|++.++++...+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 345678999999999999999999999999987665 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++|+|||++...+|.-+.+ |+.++..+++. .+.-|+|+||.|+.+.+.+..+.+++++......++++||++..|++.
T Consensus 82 alilvydiscqpsfdclpe-wlreie~yan~-kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPE-WLREIEQYANN-KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEK 159 (213)
T ss_pred eEEEEEecccCcchhhhHH-HHHHHHHHhhc-ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence 9999999999999999999 99999998755 466689999999998889999999999999888999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028353 168 CFEELVLKILDTPSL 182 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~ 182 (210)
+|..+.-++....+.
T Consensus 160 lf~~~a~rli~~ar~ 174 (213)
T KOG0095|consen 160 LFLDLACRLISEARQ 174 (213)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888665544
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.1e-32 Score=194.06 Aligned_cols=159 Identities=35% Similarity=0.593 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.++.+...+. +.+. .....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 699999999999999999999988866554 4443 33555677888889999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|+++..++..+.. |...+.......+.|+++|+||.|+.. .....+++..++...+++++++||++|.|++++|.+++
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999887 666666555556799999999999865 45566777888888899999999999999999999998
Q ss_pred HHH
Q 028353 174 LKI 176 (210)
Q Consensus 174 ~~~ 176 (210)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 764
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.3e-32 Score=194.68 Aligned_cols=162 Identities=47% Similarity=0.820 Sum_probs=143.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+.+||+++|++|||||||++++.++.+... .++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999999987644 4577777777788888888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|||++++.++..+.. |+..+.... ..++|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 82 VYDITKKQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999987 888776643 346899999999999877777788888888888899999999999999999999
Q ss_pred HHHHH
Q 028353 172 LVLKI 176 (210)
Q Consensus 172 l~~~~ 176 (210)
++..+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98875
No 59
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.4e-32 Score=194.99 Aligned_cols=159 Identities=48% Similarity=0.800 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999998865544 7777777777788888899999999999999989999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++.++..+.. |+..+... ...++|+++|+||.|+.....+..+++..++...+++++++||+++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999988 77766543 356799999999999987777888889999999999999999999999999999998
Q ss_pred HH
Q 028353 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd04113 159 RS 160 (161)
T ss_pred Hh
Confidence 75
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.1e-32 Score=194.91 Aligned_cols=159 Identities=33% Similarity=0.469 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++++++.+...+. +.+. .+...+..+...+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999998865544 4443 33445666778899999999999999988888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|++++++++.+.. |...+..... ..++|+++|+||+|+...+.+..+++..++...++++++|||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 9999999999988 6666654322 257899999999999776677777888888888999999999999999999999
Q ss_pred HHHH
Q 028353 172 LVLK 175 (210)
Q Consensus 172 l~~~ 175 (210)
|++.
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9753
No 61
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.6e-32 Score=195.27 Aligned_cols=162 Identities=33% Similarity=0.588 Sum_probs=139.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|++|||||||++++..+.|...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999887655 488878777778888889999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
++++.++..+.. |+..+.........|+++|+||.|+..... ...+++..++..++.+++++||+++.|++++|..+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999987 887765433334578999999999965433 34556777888888999999999999999999999
Q ss_pred HHHHHc
Q 028353 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
...+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 998854
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.4e-32 Score=194.33 Aligned_cols=161 Identities=37% Similarity=0.587 Sum_probs=137.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|+|||||++++.++.+...+. +.+ ........+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999888765544 443 33344566788889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
||+++..++..+.. |...+.......+.|+++|+||+|+.....+..+++..++...+++++++||++|.|++++|+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 66666554445678999999999998777777777888888889999999999999999999999
Q ss_pred HHHH
Q 028353 173 VLKI 176 (210)
Q Consensus 173 ~~~~ 176 (210)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 63
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=187.10 Aligned_cols=172 Identities=47% Similarity=0.788 Sum_probs=158.5
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
+..++.+|++++|+.|+|||+|++++..++|.+... +.|.++....+.+.++.+++++|||+|++.+++..+.+++++.
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 345789999999999999999999999999976665 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
+.++|||+++.++|+.+.. |+..++. ...+++.+++++||.|+...+.+...++.+++.+..+.+.++|+++|+|+++
T Consensus 84 GAlLVYD~TsrdsfnaLtn-WL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTN-WLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ceEEEEeccchhhHHHHHH-HHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 9999999999999999999 8888876 3467788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028353 168 CFEELVLKILDTPSL 182 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~ 182 (210)
.|-.....++...+.
T Consensus 162 aFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 162 AFLKCARTILNKIES 176 (214)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999988888766544
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.8e-32 Score=195.25 Aligned_cols=162 Identities=38% Similarity=0.685 Sum_probs=143.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGIIM 91 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~ 91 (210)
.+||+++|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999998886544 477777777778889999999999999998876 467888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC---CCCHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQC 168 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~ 168 (210)
|||++++.++..+.. |+..+.......++|+++|+||+|+.....+..+++..++...+++++++||++ +.+++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999988 888887766567899999999999987777788888889988899999999999 8899999
Q ss_pred HHHHHHHH
Q 028353 169 FEELVLKI 176 (210)
Q Consensus 169 ~~~l~~~~ 176 (210)
|..+++.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998866
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4e-32 Score=193.10 Aligned_cols=162 Identities=56% Similarity=0.933 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++.+..+...+ ++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988875544 47777777777888888899999999999998989999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++.+++.+.. |+..+..+. ..++|+++|+||+|+.....+..+.+..++...+++++++|++++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 888777654 25799999999999977677778888888888899999999999999999999999
Q ss_pred HHHHc
Q 028353 174 LKILD 178 (210)
Q Consensus 174 ~~~~~ 178 (210)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 98865
No 66
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.2e-32 Score=194.94 Aligned_cols=159 Identities=33% Similarity=0.595 Sum_probs=136.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
|+|+|++|||||||++++.++.+...+. +.. ..+...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999876655 444 33445667788889999999999999998999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-eEEEEccCCC
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (210)
+++++|+.+...|+..+... ..++|+++|+||.|+.... .+..+++..++...+. ++++|||+++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 99999999976688888764 3579999999999996432 3667788889999986 8999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028353 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
.|++++|..+++.+++
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999998754
No 67
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=4.5e-32 Score=192.57 Aligned_cols=158 Identities=35% Similarity=0.594 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+||+++|++|+|||||++++.++.+...+ ++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998886554 477777766666666 778999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|||+++++++..+.. |+..+... ..++|+++|+||.|+.....+..+++..++...+++++++||+++.|++++|++
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999887 87777653 357899999999999777777778888999999999999999999999999999
Q ss_pred HHHH
Q 028353 172 LVLK 175 (210)
Q Consensus 172 l~~~ 175 (210)
|...
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 9754
No 68
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1e-31 Score=192.26 Aligned_cols=162 Identities=41% Similarity=0.704 Sum_probs=139.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||++++.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999998886644 47777776677788999999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ 166 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (210)
+|||+++++++..+.. |...+..... ..++|+++|+||.|+. .+.+..+++.+++...+. +++++||+++.|+.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999999999877 7666654332 3468999999999986 455667788899888874 79999999999999
Q ss_pred HHHHHHHHH
Q 028353 167 QCFEELVLK 175 (210)
Q Consensus 167 ~~~~~l~~~ 175 (210)
++|.++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.1e-31 Score=190.40 Aligned_cols=159 Identities=34% Similarity=0.572 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.+.+.+. +.+.++......+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999998866554 6666666666778888999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++.++..+.. |+..+... ..+.|+++|+||.|+... ..++...++...+++++++||+++.|++++|+.++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999877 88777653 356899999999998432 12345566667788999999999999999999999
Q ss_pred HHHHcC
Q 028353 174 LKILDT 179 (210)
Q Consensus 174 ~~~~~~ 179 (210)
+.++++
T Consensus 155 ~~~~~~ 160 (161)
T cd04124 155 KLAVSY 160 (161)
T ss_pred HHHHhc
Confidence 988765
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.6e-31 Score=189.87 Aligned_cols=161 Identities=46% Similarity=0.769 Sum_probs=142.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++.++.+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999999876 445777777777788899999999999999998888888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
+|+++++++..... |+..+.... ...+|+++++||+|+........++...++...+++++++||++|.|+.++|+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999887 777776543 3679999999999997666677778888888889999999999999999999999
Q ss_pred HHHH
Q 028353 173 VLKI 176 (210)
Q Consensus 173 ~~~~ 176 (210)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9876
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.4e-31 Score=195.51 Aligned_cols=167 Identities=24% Similarity=0.371 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRG 85 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~ 85 (210)
+||+|+|++|||||||++++.++.+...+. +.+.+++...+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999998876543 666566656677788889999999999654321 12334789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCeEEEEccCCC
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTR 162 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 162 (210)
+|++|+|||++++++++.+.. |...+.... ...++|+++|+||+|+...+....++...++. ..++++++|||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999987 666665433 24679999999999997666666666777654 56899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 028353 163 VNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~ 182 (210)
.|++++|..+++.++.+-+.
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 160 WHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCHHHHHHHHHHHhhccCCC
Confidence 99999999999988866554
No 72
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=2.2e-31 Score=191.25 Aligned_cols=160 Identities=33% Similarity=0.600 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|+|||||++++..+.+...+.+.........+.+++..+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999887655433333444567788888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccCC
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAKT 161 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (210)
++++.+|+.+...|...+... ..+.|+++|+||+|+.+. ..+..+++..+++..+. ++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999976688888754 567999999999998543 24567788889988886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999876
No 73
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-34 Score=191.65 Aligned_cols=174 Identities=37% Similarity=0.680 Sum_probs=157.7
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE---------CCeEEEEEEEeCCCccccccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV---------GGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~l~D~~g~~~~~~~ 78 (210)
...++.||.+.+|++|+|||+|+.+++.++|..... +.+.++....+.+ .+.++.+++|||+|++.++++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 455788999999999999999999999999976665 8898888777665 224578999999999999999
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028353 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (210)
..++++.+-+++++||+++..||-+++. |+..+..++-..+.-+|+++||.|+++.+.+..+++..++.++++|||++|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 9999999999999999999999999999 999988777777888999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCcc
Q 028353 159 AKTRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
|-+|.|+++..+.+++.++++.+.-
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876654
No 74
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-32 Score=177.90 Aligned_cols=199 Identities=47% Similarity=0.778 Sum_probs=169.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+..+.+|.+++|+-|+|||+|+..+...+|...-| +.+.++....+.+.+.++++++||+.|++.++...+.+++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45688999999999999999999999999977766 99999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
.++|||++.+.+++.+.. |+...+. ..+++..+++++||.|++..+.+..++++.++.+.|..++++||++|.++++.
T Consensus 87 almvyditrrstynhlss-wl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred eeEEEEehhhhhhhhHHH-HHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 999999999999999988 8877765 45778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCc----ccccccCccc----ccccCCCCccCcccCCC-C
Q 028353 169 FEELVLKILDTPSL----LAEGSKGLKK----NIFKQKPPEADAAASGC-C 210 (210)
Q Consensus 169 ~~~l~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~ 210 (210)
|-.....+.++... +...+.+..+ |..-.-..+...++.+| |
T Consensus 165 fle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 165 FLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 98888887766543 2222222222 22222345566677888 6
No 75
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2e-31 Score=194.12 Aligned_cols=158 Identities=23% Similarity=0.405 Sum_probs=126.8
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcCCC-----CCC-CCCcee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 028353 14 LFKLLMIGDSGVGKSSLLL-SFTSDNF-----EEL-SPTIGV-DFKVKY--------VDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~-~l~~~~~-----~~~-~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
.+||+++|++|||||||+. ++.++.+ ... .+|.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 6655433 222 235532 222221 25688899999999999865 2
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------Ccee
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVV 138 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~ 138 (210)
....+++++|++++|||++++.||+.+...|...+.... .+.|+++||||+|+.. .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 445678999999999999999999999755888887643 4789999999999864 3677
Q ss_pred cHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHH
Q 028353 139 TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
..++++.++++++++|++|||++|.||+++|..+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999999999999999864
No 76
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=3.3e-31 Score=189.30 Aligned_cols=161 Identities=34% Similarity=0.608 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++.++.+...+. +.+. .....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999988865544 4443 34566677888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCCCHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l 172 (210)
|++++++++.... |...+.......++|+++++||.|+...+.+..++...++...+ ++++++||+++.|++++|.++
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999987 77767654445679999999999997777777777778888887 789999999999999999999
Q ss_pred HHHHH
Q 028353 173 VLKIL 177 (210)
Q Consensus 173 ~~~~~ 177 (210)
+..++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98764
No 77
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=3.2e-31 Score=188.03 Aligned_cols=159 Identities=72% Similarity=1.105 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.+..+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988765 4457777777777777888899999999999999888899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++.+++.+.. |+..+..+....+.|+++|+||+|+. ......++...++...+++++++||++|.|+++++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999888 88888877767789999999999996 334556778888888899999999999999999999998
Q ss_pred HH
Q 028353 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 78
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.8e-31 Score=188.50 Aligned_cols=154 Identities=23% Similarity=0.395 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+.++..+.|.+.+++.+..+ ...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 489999999999999999999888876555434333 45678888889999999999864 245678999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCeEEEEccCCCCCHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
++++.+|+.+.. |+..+.......+.|+++|+||.|+. ..+.+..++++.+++.. ++.|++|||+++.||+++|..
T Consensus 75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 999999999987 87877765545678999999999984 35677888888888876 489999999999999999999
Q ss_pred HHHH
Q 028353 172 LVLK 175 (210)
Q Consensus 172 l~~~ 175 (210)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 79
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3.2e-31 Score=193.44 Aligned_cols=157 Identities=31% Similarity=0.564 Sum_probs=136.7
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc
Q 028353 20 IGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR 98 (210)
Q Consensus 20 ~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (210)
+|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988887544 5888888888888889999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 99 DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.+|..+.. |+..+.... .++|+++|+||+|+... .+..+. ..++...++++++|||++|.||+++|.+++..+.+
T Consensus 81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999987 988887643 57999999999998543 334443 46777888999999999999999999999999977
Q ss_pred CCC
Q 028353 179 TPS 181 (210)
Q Consensus 179 ~~~ 181 (210)
...
T Consensus 156 ~~~ 158 (200)
T smart00176 156 DPN 158 (200)
T ss_pred ccc
Confidence 643
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=3.8e-31 Score=189.86 Aligned_cols=158 Identities=31% Similarity=0.546 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|+|||||++++.++.+...+.....+.+...+.+++..+.+.+||+||+..+...+..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999988887766644455555667888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEEEEccCC
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSAKT 161 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (210)
++++.+|+.+...|+..+... ..++|+++|+||.|+.. .+.+..+++..++...+. +++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999876688777643 34689999999999853 345677788899998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVL 174 (210)
Q Consensus 162 ~~~i~~~~~~l~~ 174 (210)
+.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
No 81
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.3e-31 Score=187.90 Aligned_cols=159 Identities=40% Similarity=0.690 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++++..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999886544 47777777777788888899999999999999988999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+.... ..+.|+++|+||.|+........++...++...+++++++||+++.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 777665432 23699999999999976666777778888888899999999999999999999998
Q ss_pred HH
Q 028353 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 75
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.8e-31 Score=190.17 Aligned_cols=160 Identities=33% Similarity=0.523 Sum_probs=133.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCccEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 93 (210)
||+++|++|||||||+++++.+.+...++ +.. ......+.+++..+.+.+||+||+.. ....+...++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999888765554 433 33345567788889999999999885 3345667789999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC-CHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEE 171 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~ 171 (210)
|++++.+|+.+.. |...+..... ..++|+++|+||+|+...+.+..+++..++...+.+++++||+++. |++++|.+
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999988 7777776443 4579999999999997777778888889999999999999999995 99999999
Q ss_pred HHHHHH
Q 028353 172 LVLKIL 177 (210)
Q Consensus 172 l~~~~~ 177 (210)
+.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998774
No 83
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=7e-31 Score=188.14 Aligned_cols=165 Identities=39% Similarity=0.696 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++.+..+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988765544 6676776667778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCCCHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 169 (210)
|++++.++..... |...+..... ..++|+++|+||+|+..+.....++...+....+ .+++++|+++|.|++++|
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 9999999988876 6665544332 2378999999999997666666777788888877 789999999999999999
Q ss_pred HHHHHHHHcCC
Q 028353 170 EELVLKILDTP 180 (210)
Q Consensus 170 ~~l~~~~~~~~ 180 (210)
+++.+.+++..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999887763
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=7e-31 Score=186.20 Aligned_cols=160 Identities=41% Similarity=0.735 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|+|||||++++.++.+...+. +.........+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988765443 5555555666667788889999999999988888998999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |...+..... .++|+++|+||+|+.....+..+++..+....+++++++|++++.|++++++++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 7777766543 3799999999999987667777788888888899999999999999999999998
Q ss_pred HHH
Q 028353 174 LKI 176 (210)
Q Consensus 174 ~~~ 176 (210)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 875
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=6e-31 Score=187.15 Aligned_cols=159 Identities=33% Similarity=0.523 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+||+++|++|||||||++++..+ .+...+ ++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 455444 477777766666664 56799999999999988888899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|||+++++++..+.. |+..+.... .++|+++|+||.|+.....+.......+....+++++++||+++.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYDVSNKASFENCSR-WVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 9999999999998877 877776542 5689999999999977666777667777777889999999999999999999
Q ss_pred HHHHHH
Q 028353 171 ELVLKI 176 (210)
Q Consensus 171 ~l~~~~ 176 (210)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 999875
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=7.9e-31 Score=194.81 Aligned_cols=165 Identities=31% Similarity=0.409 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc-CccEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR-GAQGIIM 91 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~ 91 (210)
+||+++|++|||||||+++|..+.+. ..+. +.+.++....+.+++....+.+||++|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888875 4444 444466677788888899999999999872 22334556 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|||++++.+|+.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999888 7777766544467999999999999877778888888888888999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028353 172 LVLKILDTPSL 182 (210)
Q Consensus 172 l~~~~~~~~~~ 182 (210)
+++.+......
T Consensus 158 l~~~~~~~~~~ 168 (221)
T cd04148 158 IVRQIRLRRDS 168 (221)
T ss_pred HHHHHHhhhcc
Confidence 99998754443
No 87
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=1.5e-30 Score=184.98 Aligned_cols=163 Identities=37% Similarity=0.603 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++++...+...+..............++..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999988886555432233444556778889999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
++++.++..+.. |...+.......++|+++|+||+|+........++...+...++++++++||+++.|++++|.++.+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999988 5555544444567999999999999765556667777888888899999999999999999999998
Q ss_pred HHHc
Q 028353 175 KILD 178 (210)
Q Consensus 175 ~~~~ 178 (210)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 8753
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1e-30 Score=186.90 Aligned_cols=163 Identities=22% Similarity=0.285 Sum_probs=135.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
...+||+++|++|||||||+++++++.+. ..+ +|.+..+....+.+++..+.+.+||++|.+.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999986 544 4777777666677888888999999999999888888889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQC 168 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~ 168 (210)
++|+|++++.+++.+.. |...+.. ..++|+++|+||.|+.+.......+...++...+.. ++++||+++.|++++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 99999999999988876 6654432 346899999999999655444334456677777774 799999999999999
Q ss_pred HHHHHHHHHc
Q 028353 169 FEELVLKILD 178 (210)
Q Consensus 169 ~~~l~~~~~~ 178 (210)
|..+.+.+..
T Consensus 158 f~~l~~~~~~ 167 (169)
T cd01892 158 FTKLATAAQY 167 (169)
T ss_pred HHHHHHHhhC
Confidence 9999998763
No 89
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=1.1e-30 Score=196.38 Aligned_cols=160 Identities=26% Similarity=0.444 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++++++.+...+. +.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 589999999999999999999998876554 544 555666788899999999999999988888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhc--------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCeEEEEccCCCCC
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYS--------TNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVN 164 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 164 (210)
|+++.++|+.+.. |...+.... ...++|+++|+||+|+...+.+..+++..++.. .++.++++||+++.|
T Consensus 80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 9999999999987 666665431 235789999999999976566777777777654 467899999999999
Q ss_pred HHHHHHHHHHHH
Q 028353 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
++++|.+|....
T Consensus 159 I~elf~~L~~~~ 170 (247)
T cd04143 159 LDEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHHh
Confidence 999999999866
No 90
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3.4e-30 Score=188.68 Aligned_cols=167 Identities=30% Similarity=0.468 Sum_probs=135.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|++|||||||+++++++.+...+. +.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998876554 433 4555567778888999999999999988888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCeEEEEccCCCCCHHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-ERVVTKKEGINFAR-EYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
++++.+++.+.. |...+.......++|+++|+||+|+.. ...+..++...... ..+.+++++||++|.|++++|+++
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence 999999999987 766666555556799999999999865 34454544444443 446789999999999999999999
Q ss_pred HHHHHcCCCccc
Q 028353 173 VLKILDTPSLLA 184 (210)
Q Consensus 173 ~~~~~~~~~~~~ 184 (210)
++.+.......+
T Consensus 159 ~~~~~~~~~~~~ 170 (198)
T cd04147 159 LRQANLPYNLSP 170 (198)
T ss_pred HHHhhcccccch
Confidence 998865444443
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=8.5e-30 Score=182.09 Aligned_cols=164 Identities=44% Similarity=0.820 Sum_probs=139.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+.++|+++|++|||||||++++..+.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 356799999999999999999999987775543 4666667777778888889999999999998888888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||++++.++..+.. |+..+... ...++|+++|+||+|+.....+..+....+......+++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 84 ILTYDITCEESFRCLPE-WLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLF 161 (169)
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHH
Confidence 99999999999988877 87777654 24468999999999997776677666777777777889999999999999999
Q ss_pred HHHHHHH
Q 028353 170 EELVLKI 176 (210)
Q Consensus 170 ~~l~~~~ 176 (210)
+++.+.+
T Consensus 162 ~~i~~~~ 168 (169)
T cd04114 162 LDLACRL 168 (169)
T ss_pred HHHHHHh
Confidence 9999865
No 92
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=9.3e-30 Score=184.81 Aligned_cols=164 Identities=35% Similarity=0.541 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|+|||||++++..+.+.+.+. +....+ ...+.+++..+.+.+||++|++.+.......++.+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 589999999999999999999887765443 433333 345667888889999999999888777777789999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC----------CceecHHHHHHHHHHhCC-eEEEEccCCC
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES----------ERVVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (210)
|+++.+++..+...|...+... ..++|+++|+||.|+.. .+.+..+++..++...+. ++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999976688888754 34699999999999853 234456778888888885 7999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 028353 163 VNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~ 181 (210)
.|++++|.++.+.++..++
T Consensus 159 ~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 159 EGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCHHHHHHHHHHHHhcccC
Confidence 9999999999998866554
No 93
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3e-30 Score=184.54 Aligned_cols=160 Identities=24% Similarity=0.433 Sum_probs=126.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|+++||||||++++.+..+..+.+|.+..+.. + +...+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~--~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVET--V--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEE--E--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999988776655566655432 2 23467899999999999988999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC------CeEEEEccCCCCCHHHHH
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG------CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 169 (210)
+++.++..+.. |+..+.......+.|+++|+||+|+... ...+++..++...+ +.+++|||++|.|++++|
T Consensus 77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999887 4444433222345899999999998643 55566666554222 258899999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028353 170 EELVLKILDTPSL 182 (210)
Q Consensus 170 ~~l~~~~~~~~~~ 182 (210)
+||.+.+.++..+
T Consensus 154 ~~l~~~~~~~~~~ 166 (169)
T cd04158 154 DWLSRQLVAAGVL 166 (169)
T ss_pred HHHHHHHhhcccc
Confidence 9999988776654
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.1e-29 Score=182.59 Aligned_cols=159 Identities=34% Similarity=0.631 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|||||||++++.++.+...+. +.+..+ ...+.+++..+.+.+|||+|++.+...+...+..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 589999999999999999999998876554 554443 345677888899999999999998888888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccC
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (210)
|+++.++++.+...|...+... ..++|+++|+||.|+... ..+...+++.++...+. ++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999876688777653 357899999999998543 22345667788877775 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVLKI 176 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (210)
+|.|++++|.++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.8e-30 Score=185.33 Aligned_cols=155 Identities=24% Similarity=0.361 Sum_probs=122.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..+||+++|++|||||||+++|..+.+....++.+.++.. +. ...+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 3589999999999999999999988876655666655532 22 2468899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCeEEEEccCCCCCHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 167 (210)
||++++.++.....+|...+.. ....++|+++|+||+|+.+. +..+++..+... ....++++||++|.|+++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 84 VDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 9999999999887755555543 22346899999999998643 455555555421 234689999999999999
Q ss_pred HHHHHHH
Q 028353 168 CFEELVL 174 (210)
Q Consensus 168 ~~~~l~~ 174 (210)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 96
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2.9e-30 Score=186.79 Aligned_cols=167 Identities=25% Similarity=0.353 Sum_probs=131.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.+....++.+.+.....+.. ++..+.+.+||+||++.+...|..+++++|++++|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888766667666665555544 44678999999999999989999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCeEEEEccCCCCCHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------YGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~ 166 (210)
+|+++..++..+.. |+..+.......++|+++|+||+|+... ...++...+... .+++++++||+++.|++
T Consensus 83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 99999988888876 6555554444567999999999998632 333334433321 12468999999999999
Q ss_pred HHHHHHHHHHHcCCCcc
Q 028353 167 QCFEELVLKILDTPSLL 183 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~ 183 (210)
++|++|.+.+.+.++-.
T Consensus 160 ~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 160 EGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999997655433
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.3e-29 Score=182.99 Aligned_cols=165 Identities=35% Similarity=0.549 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|+|||||++++.++.+...+. +....+ ...+.+++..+.+.+||+||+..+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 689999999999999999999888765443 443333 345667777889999999999998888888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|.++..+++.+..+|...+. .....+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|+.++|.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILD-MLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999885554444 34456789999999999976666666677778888889999999999999999999999
Q ss_pred HHHHcCCC
Q 028353 174 LKILDTPS 181 (210)
Q Consensus 174 ~~~~~~~~ 181 (210)
+.+.+...
T Consensus 160 ~~~~~~~~ 167 (180)
T cd04137 160 EEIEKVEN 167 (180)
T ss_pred HHHHHhcC
Confidence 99866553
No 98
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=9.7e-30 Score=179.39 Aligned_cols=157 Identities=55% Similarity=0.940 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|+++||||||++++.++.+... .++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998776 458888888888888888899999999999998899999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+.... ..+.|+++++||+|+........++...++...+.+++++|++++.|++++|+++.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999998888 777776643 25689999999999975666778888889988899999999999999999999986
No 99
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.2e-29 Score=181.52 Aligned_cols=158 Identities=34% Similarity=0.603 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++|.++.+...+..............++..+.+.+||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999885444433334445556778889999999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-----------eecHHHHHHHHHHhCC-eEEEEccCCC
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-----------VVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (210)
++++.++.....+|+..+..+. .+.|+++|+||+|+.... .+..+++..+....+. +++++||+++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999988877888777643 479999999999986554 2356778888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 028353 163 VNVQQCFEELVL 174 (210)
Q Consensus 163 ~~i~~~~~~l~~ 174 (210)
.|++++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 100
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1e-29 Score=179.85 Aligned_cols=158 Identities=40% Similarity=0.658 Sum_probs=135.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|++|||||||++++++..+...+. +.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 68999999999999999999887755554 333 5556667777778999999999999988888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
.++++++..+.. |...+.......++|+++|+||+|+........+++..++...+.+++++|++++.|++++|.+|++
T Consensus 80 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 999999999988 5555544344467999999999999876777888889999988899999999999999999999987
Q ss_pred H
Q 028353 175 K 175 (210)
Q Consensus 175 ~ 175 (210)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=6.4e-30 Score=184.50 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=123.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|+++||||||++++..+.+....++.+.+... + +...+.+.+||+||++.+..+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999988887655677655432 2 2346789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-----CCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-----GCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 166 (210)
|||+++++++.....++...+.. ....++|++||+||+|++... ..++........ ...++++||++|.|++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcC-HhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999998887744444332 123578999999999986543 333322222111 1236689999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+||.+.+.+.
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987653
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.7e-30 Score=183.91 Aligned_cols=153 Identities=22% Similarity=0.409 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|+++||||||++++..+.+....++.+..... +.. ..+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 58999999999999999999888887655666655432 222 46889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH-HHHHH----HhCCeEEEEccCCCCCHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG-INFAR----EYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
+++..++.....+|...+.. ....+.|+++++||+|+.+. ...++. ..+.. ...+.++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 77 SNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 99999999988755544433 22346899999999998543 222222 22211 123457899999999999999
Q ss_pred HHHHH
Q 028353 170 EELVL 174 (210)
Q Consensus 170 ~~l~~ 174 (210)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.6e-30 Score=185.75 Aligned_cols=158 Identities=22% Similarity=0.370 Sum_probs=121.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||++++..+.+....++.+..+.. +.. ..+.+.+||+||+..+...|..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999877776555566655532 222 45789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (210)
|||++++.++.....+|...+.. ....++|++||+||.|+.+.. ..+++..... ...+.++++||++|.|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 99999999999888845544433 223468999999999996432 2222222211 122357789999999999
Q ss_pred HHHHHHHHHH
Q 028353 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.8e-29 Score=178.34 Aligned_cols=161 Identities=30% Similarity=0.431 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++|.++.+...+++....+ .....+.+..+.+.+||+||...+...+...+..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999998876555332222 2334556778999999999998887777778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhC--CeEEEEccCCCCCHHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREYG--CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 170 (210)
++++.+++.+...|...+.... .+.|+++|+||+|+.+.... ..++...+..... .+++++||+++.|++++|.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 9999999998766888887643 47899999999999655432 1233333333333 3799999999999999999
Q ss_pred HHHHHHHc
Q 028353 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
.+...+++
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99988764
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=1.3e-29 Score=181.87 Aligned_cols=158 Identities=23% Similarity=0.336 Sum_probs=123.1
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.....++|+++|++|||||||++++.+..+....++.+.... .+.++ .+.+.+||+||++.+...+..+++.+|++
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 345678999999999999999999998866655566664333 33343 47899999999998888899999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN 164 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 164 (210)
++|+|++++.++..... |+..+.......++|+++|+||+|+.... ..+++..+.. ..+++++++||++|.|
T Consensus 86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 86 IWVVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999999999988877 44443322234679999999999996543 3444454442 2356899999999999
Q ss_pred HHHHHHHHHH
Q 028353 165 VQQCFEELVL 174 (210)
Q Consensus 165 i~~~~~~l~~ 174 (210)
++++|+++++
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=5.3e-30 Score=185.14 Aligned_cols=161 Identities=24% Similarity=0.419 Sum_probs=123.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||++++..+.+....+|.+.++.. +. ...+.+.+||+||++.+...+..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 34589999999999999999999888887655666655532 22 356889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 166 (210)
|+|++++.++......+...+... ...++|++||+||.|+++.. ..+++.... ....+.++++||++|.|++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999998887555544431 23468999999999986432 222222211 1112356799999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+||.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888654
No 107
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=180.20 Aligned_cols=168 Identities=32% Similarity=0.565 Sum_probs=150.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+|++++|+.++|||+|+-.+..+.|+..+.+.-.+-+...+.++ +..+.+.+|||+|++.|+.++...+..+|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 46799999999999999999999999999888755556667778885 99999999999999999999888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEEE
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (210)
++|++.++.||+++...|+.++..+. +++|+|+||+|.||... ..+..+++..+++..| ..|++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999888999999874 88999999999999632 3567788999999999 469999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 158 SAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
||+++.|+.+.|+..+...+...+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999999988765
No 108
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=9.4e-29 Score=179.14 Aligned_cols=169 Identities=37% Similarity=0.535 Sum_probs=151.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..+||+++|.+|+|||+|.-++..+.|...+..+..+.+...+.+++..+.+.++||+|++++..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999988877444477888899999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
|++++..||+.+.. +...+.+......+|+++||||+|+...+.+..++++.++..++++++++||+.+.+++++|..+
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999 55555554555668999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028353 173 VLKILDTPSL 182 (210)
Q Consensus 173 ~~~~~~~~~~ 182 (210)
++.+...+..
T Consensus 161 ~r~~~~~~~~ 170 (196)
T KOG0395|consen 161 VREIRLPREG 170 (196)
T ss_pred HHHHHhhhcc
Confidence 9988764443
No 109
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.7e-30 Score=169.99 Aligned_cols=164 Identities=39% Similarity=0.700 Sum_probs=148.7
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCC-C-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECC
Q 028353 19 MIGDSGVGKSSLLLSFTSDNFEELS-P-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 19 i~G~~~~GKstli~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (210)
++|++++|||+|+-|+..+-|-... . +.+.++....+.+++.++++++|||+|++.+++....+++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888877764332 2 8899999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 97 RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
+..||++... |+..+.++. ...+.+.+++||+|+..++.+..++.+.++..+++|+.++||++|.|++..|-.|.+.+
T Consensus 82 nkasfdn~~~-wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cchhHHHHHH-HHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999 999999986 44578889999999998899999999999999999999999999999999999999999
Q ss_pred HcCCCccc
Q 028353 177 LDTPSLLA 184 (210)
Q Consensus 177 ~~~~~~~~ 184 (210)
.+..-..+
T Consensus 160 ~k~~~~~~ 167 (192)
T KOG0083|consen 160 KKLKMGAP 167 (192)
T ss_pred HHhccCCC
Confidence 77654443
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.3e-27 Score=177.14 Aligned_cols=171 Identities=32% Similarity=0.540 Sum_probs=142.5
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|||||||++++..+.+...+ ++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44556699999999999999999988877775544 58888888777778888999999999999988888888899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++++|||+++..++..+.. |+..+... ..+.|+++++||.|+.+.. ... +...++...++.++++||+++.|+++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999987 77777653 3568999999999985432 222 23456677788999999999999999
Q ss_pred HHHHHHHHHHcCCCccc
Q 028353 168 CFEELVLKILDTPSLLA 184 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~ 184 (210)
.|.++.+.+...+..+-
T Consensus 159 ~f~~ia~~l~~~p~~~~ 175 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVF 175 (215)
T ss_pred HHHHHHHHHhhccccee
Confidence 99999999988776543
No 111
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=3.2e-29 Score=178.27 Aligned_cols=151 Identities=24% Similarity=0.320 Sum_probs=120.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
|+++|++|||||||++++.++.+...+ ++.+... ..+++..+.+.+||++|+..+...+..+++++|++++|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 799999999999999999988775443 4655432 23455678999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH----HHHHHHHHHhCCeEEEEccCC------CCCH
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK----KEGINFAREYGCLFIECSAKT------RVNV 165 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i 165 (210)
+++.++..... |+..+... ..++|+++|+||.|+.....+.. ..+..++.+.+++++++||++ ++|+
T Consensus 78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 99999988877 55544332 26799999999999976543321 224555566678899999998 9999
Q ss_pred HHHHHHHHH
Q 028353 166 QQCFEELVL 174 (210)
Q Consensus 166 ~~~~~~l~~ 174 (210)
.++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998864
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.1e-28 Score=175.75 Aligned_cols=155 Identities=23% Similarity=0.392 Sum_probs=120.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..+||+++|++|+|||||+++++.+.+....++.+.++.. +.. ..+.+.+||+||+..+...+..+++.+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4589999999999999999999988887766677665533 233 357899999999999988999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 167 (210)
+|+++++++.....++...+.. ....++|+++++||+|+... ...++..... ...+++++++||+++.|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999888877744444432 22356899999999998653 2333322221 23345799999999999999
Q ss_pred HHHHHHH
Q 028353 168 CFEELVL 174 (210)
Q Consensus 168 ~~~~l~~ 174 (210)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 113
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.4e-27 Score=174.24 Aligned_cols=160 Identities=26% Similarity=0.402 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-----CeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-----GKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+||+++|+++||||||++++.++.+...+. |.+.++....+.++ +..+.+.+||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999998876554 77777766666653 567899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhc------------------cCCCCcEEEEEeCCCCCCCceecHH----HHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYS------------------TNQDCIKLLVGNKVDKESERVVTKK----EGINF 146 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~ 146 (210)
+|+|||++++.||+++.. |+..+.... ...++|++|||||.|+.+.+.+..+ ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence 999999999999999987 888876532 1246899999999999765544443 24566
Q ss_pred HHHhCCeEEEEccCCCCC----------HHHHHHHHHHH
Q 028353 147 AREYGCLFIECSAKTRVN----------VQQCFEELVLK 175 (210)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~----------i~~~~~~l~~~ 175 (210)
+...+++.++.++++... +..+|+.++++
T Consensus 160 a~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 160 AEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 778899988888885532 45555555543
No 114
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=3.6e-28 Score=174.44 Aligned_cols=159 Identities=30% Similarity=0.434 Sum_probs=128.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
....+||+++|+.|||||||++++..+......||.+.+..... + ..+.+.+||++|+..+...|..++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~--~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIK--Y--KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEE--E--TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceee--e--CcEEEEEEeccccccccccceeeccccceeE
Confidence 47889999999999999999999998776665567666554433 3 4567899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCeEEEEccCCCCC
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------YGCLFIECSAKTRVN 164 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~ 164 (210)
||+|.++.+.+......+...+.. ....++|++|++||+|+++. ...+++...... ..+.++.|||.+|.|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~-~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLND-PELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTS-GGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEecccceeecccccchhhhcch-hhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999999988856555554 33467999999999998754 444444444332 234599999999999
Q ss_pred HHHHHHHHHHHH
Q 028353 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 115
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=6.4e-28 Score=163.14 Aligned_cols=166 Identities=20% Similarity=0.340 Sum_probs=137.6
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
+...++.++|+++|..||||||++++|.+.+.....|+.+.+.....+ ..+.+++||.+|+..+++.|.++|...|
T Consensus 10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 10 QKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred HHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccC
Confidence 345677999999999999999999999999877777788877765544 6789999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---eec-HHHHHHHHHHhCCeEEEEccCCCC
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVT-KKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
++|+|+|.+++..++.....+...+.. ..-.+.|++|++||.|++..- .+. .-+...+++...++++-||+.+|+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 999999999999999887755554442 334568999999999997332 121 123455667788999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028353 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
++.+.++|+++.+.+
T Consensus 165 ~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMS 179 (185)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999999877
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=3.1e-28 Score=172.46 Aligned_cols=153 Identities=24% Similarity=0.403 Sum_probs=116.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
+|+++|++|||||||++++.++.+....++.+.++... .. ...+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEML--QL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEE--Ee-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999998876666666544332 22 2457899999999999888898899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH------HHHhCCeEEEEccCCCCCHHHHH
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF------AREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
+++.++.....++...+.. ....+.|+++|+||+|+... ...+++... ....++++++|||++|.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999888887734433332 22357999999999998543 122222211 12234579999999999999999
Q ss_pred HHHHH
Q 028353 170 EELVL 174 (210)
Q Consensus 170 ~~l~~ 174 (210)
.+|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=5.9e-28 Score=175.81 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=122.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.+.+||+++|++|||||||++++.++.+..+.++.+.+.. .+.++ .+.+.+||+||+..+...|..+++.+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~--~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSE--ELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3568999999999999999999998887655555554433 33444 3678999999999888888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----------------hCCeEE
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----------------YGCLFI 155 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 155 (210)
|+|+++..++.....++...+. .....+.|+++++||+|+.. .+..++++.+... ...+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~-~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLS-DEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHc-CccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999888877763444333 23345699999999999864 3455555555532 224689
Q ss_pred EEccCCCCCHHHHHHHHHHH
Q 028353 156 ECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~ 175 (210)
+|||+++.|++++|.|+.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999864
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.9e-28 Score=174.84 Aligned_cols=154 Identities=22% Similarity=0.353 Sum_probs=116.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
+|+++|++|||||||++++.+.......++.+.+.. .+.. ..+.+.+||+||+..+...|..+++++|++|+|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 489999999999999999997733344456665433 3333 457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec----HHHHHHHHHHhC--CeEEEEccCCC------C
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT----KKEGINFAREYG--CLFIECSAKTR------V 163 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~--~~~~~~Sa~~~------~ 163 (210)
++..++..+.. |+..+.......++|+++|+||.|++...... ......++.+.+ +.+++|||++| .
T Consensus 77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 99999998887 55555443333578999999999997654211 111122332223 46888999998 8
Q ss_pred CHHHHHHHHHH
Q 028353 164 NVQQCFEELVL 174 (210)
Q Consensus 164 ~i~~~~~~l~~ 174 (210)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=2.2e-28 Score=173.00 Aligned_cols=152 Identities=24% Similarity=0.358 Sum_probs=115.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|++++|||||++++..+.+....++.+.+... + +...+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVET--V--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEE--E--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999888776655565555432 2 23457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHHHHH
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+++.++......|...+.. ....++|+++|+||+|+.+.. ...++.... ...+.+++++||+++.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEE-EELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhc-hhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9988887766645544443 223468999999999986443 122221111 11234699999999999999999
Q ss_pred HHHH
Q 028353 171 ELVL 174 (210)
Q Consensus 171 ~l~~ 174 (210)
++.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=6.3e-28 Score=170.60 Aligned_cols=152 Identities=24% Similarity=0.375 Sum_probs=119.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|++|||||||++++++..+....++.+.+..... + ....+.+||+||+..+...+..++..+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999886655556665554332 2 357899999999999988999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHHHHHH
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+++.++..... |+..+.......+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 77 SDRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999998877 44444333335679999999999986543 2223333322 2345799999999999999999
Q ss_pred HHHH
Q 028353 171 ELVL 174 (210)
Q Consensus 171 ~l~~ 174 (210)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=6.3e-28 Score=171.17 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-C-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF-E-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+|+++|++|||||||+++|.+..+ . ...++.+.+... + ....+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 2 333466644332 2 234678999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++.++..... |+..+.... ...++|+++|+||+|+..... .++...... ....+++++||++|.|++
T Consensus 77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999887776 444443221 235799999999999865422 222222111 123458999999999999
Q ss_pred HHHHHHHH
Q 028353 167 QCFEELVL 174 (210)
Q Consensus 167 ~~~~~l~~ 174 (210)
++|+||.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2.5e-27 Score=171.59 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=120.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||++++.++.+..+.++.+.+... +.+ ..+.+.+||+||+..+...|..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEE--LAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45699999999999999999999988776555555544332 233 34788999999999888899999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCeEEEEcc
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA 159 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 159 (210)
|+|++++.++......+...+. .....++|+++|+||+|++.. +..+++...... ....+++|||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~-~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLS-DEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHc-ChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999988888773443333 222357899999999998642 444444433311 1234999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028353 160 KTRVNVQQCFEELVLK 175 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~ 175 (210)
+++.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 123
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-29 Score=173.59 Aligned_cols=172 Identities=28% Similarity=0.488 Sum_probs=159.0
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
+...+..||++|+|..++||||+|+++|.+-|...+. +.+.++....+.+.+..+.+.+||++|+++++.+..++++++
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 3455788999999999999999999999999987776 999999988899999999999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
.+.++||+.+|..||+.... |.+.+..- ...+|.++|-||+|+.+...+...+++.+++..++.++.+|+++..|+.
T Consensus 94 qa~vLVFSTTDr~SFea~~~-w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLE-WYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred cceEEEEecccHHHHHHHHH-HHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999 88877653 4569999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 028353 167 QCFEELVLKILDTPSL 182 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~ 182 (210)
..|.+|++.+.+...+
T Consensus 171 ~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877666
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.9e-27 Score=169.59 Aligned_cols=152 Identities=26% Similarity=0.422 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFE-------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+|+++|++|+|||||++++.+.... ...++.+..+.. +.+ ....+.+||+||+..+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999754321 122244443332 333 35789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hCCeEEEEccCC
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-------YGCLFIECSAKT 161 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 161 (210)
+++|+|++++.++..... |+..+.......++|+++|+||+|+... ...++...+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999888888877 4444433333467999999999998653 333444444332 245799999999
Q ss_pred CCCHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVL 174 (210)
Q Consensus 162 ~~~i~~~~~~l~~ 174 (210)
|.|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999875
No 125
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=4.3e-26 Score=163.45 Aligned_cols=144 Identities=40% Similarity=0.635 Sum_probs=125.2
Q ss_pred CCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhh
Q 028353 37 DNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY 115 (210)
Q Consensus 37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (210)
+.|.+.+ +|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+.. |+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHh
Confidence 3455444 588888888888899999999999999999999999999999999999999999999999987 77777653
Q ss_pred ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028353 116 STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 116 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
. ..++|+++|+||+|+...+.+..+++..++...+..++++||++|.|++++|.+|++.+.+..+.
T Consensus 82 ~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 82 R-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred c-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 3 35789999999999976667788888888888899999999999999999999999999876655
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.9e-26 Score=174.40 Aligned_cols=174 Identities=25% Similarity=0.394 Sum_probs=134.0
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-------------CeEEEEEEEeCCCcc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-------------GKKLKLAIWDTAGQE 73 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~ 73 (210)
..+....+||+++|+.|||||||+++|.++.+...+ ++.+.++....+.++ +..+.+.|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 455677899999999999999999999999886654 488888766666654 256889999999999
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhcc-----------CCCCcEEEEEeCCCCCCCc---e--
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-----------NQDCIKLLVGNKVDKESER---V-- 137 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~~---~-- 137 (210)
.+..++..+++++|++|+|||+++..+++.+.. |+..+..... ..++|++||+||+|+...+ .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s 173 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS 173 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence 999999999999999999999999999999988 8888876532 1358999999999996543 2
Q ss_pred -ecHHHHHHHHHHhCCe-E---------------EEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028353 138 -VTKKEGINFAREYGCL-F---------------IECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 138 -~~~~~~~~~~~~~~~~-~---------------~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
+..+++++|+...++. . +...|+.+.--.+.+....+.+.+++=.
T Consensus 174 ~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (334)
T PLN00023 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYF 235 (334)
T ss_pred cccHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhh
Confidence 3578899999988742 0 2234555554444455555555544433
No 127
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1e-25 Score=161.61 Aligned_cols=155 Identities=22% Similarity=0.368 Sum_probs=117.7
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
+....++|+++|++|||||||++++.+..+....++.+.+... +..+ ...+.+||+||+..+...+..+++.+|++
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~--i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKT--VQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 3455899999999999999999999988776555666654433 3333 36789999999988888888889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--------CeEEEEccCC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--------CLFIECSAKT 161 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 161 (210)
++|+|+++..++.....++...+.. ....++|+++++||.|+..... .++ +....+ .+++++||++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCC
Confidence 9999999988888777644444433 2345699999999999864322 222 222222 2478999999
Q ss_pred CCCHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVL 174 (210)
Q Consensus 162 ~~~i~~~~~~l~~ 174 (210)
+.|++++|+||.+
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.5e-25 Score=159.90 Aligned_cols=156 Identities=18% Similarity=0.110 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhcccCc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSSYYRGA 86 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~~ 86 (210)
+|+++|++|+|||||+++|.+..+... +..+.+............+.+.+|||||...... ........+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA-PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC-CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 799999999999999999998876421 2222222222222333467899999999742110 001111236
Q ss_pred cEEEEEEECCCcccH--HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028353 87 QGIIMVYDVTRRDTF--TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 87 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (210)
|++++|+|+++..++ ..... |...+... ..+.|+++|+||+|+.....+.. ...+....+.+++++||+++.|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLS-LFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred CcEEEEEeCCcccccchHHHHH-HHHHHHhh--cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 899999999987654 44444 66666542 24789999999999965443332 4455555567899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028353 165 VQQCFEELVLKIL 177 (210)
Q Consensus 165 i~~~~~~l~~~~~ 177 (210)
++++|+++.+.++
T Consensus 156 i~~l~~~l~~~~~ 168 (168)
T cd01897 156 VDEVKNKACELLL 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.5e-25 Score=161.64 Aligned_cols=153 Identities=23% Similarity=0.281 Sum_probs=112.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CCCCC-C------CceeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN-------FEELS-P------TIGVDFKVKYVDV-----GGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~-------~~~~~-~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~ 76 (210)
+|+++|++++|||||+++|++.. +...+ + +.+.++....... ++..+.+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998642 11111 1 1233333322222 5678899999999999998
Q ss_pred cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe---
Q 028353 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL--- 153 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 153 (210)
..+..+++.+|++|+|+|+++..++..... |.... ..++|+++|+||+|+.... ..+....+....+++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence 888889999999999999999877666654 43322 2468999999999986432 122234555555653
Q ss_pred EEEEccCCCCCHHHHHHHHHHHH
Q 028353 154 FIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
++++||++|.|++++|+++.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998765
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.2e-25 Score=158.51 Aligned_cols=151 Identities=25% Similarity=0.409 Sum_probs=114.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
|+++|++|||||||++++.+..+...+. +.+..+.. +..+ .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999988765443 55544432 2332 37899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHHHHH
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
++..++......|...+.. ....++|+++|+||.|+...... ....... ....++++++|++++.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9988888777634444332 33457899999999998654322 1111111 12235789999999999999999
Q ss_pred HHHH
Q 028353 171 ELVL 174 (210)
Q Consensus 171 ~l~~ 174 (210)
++.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=2.8e-25 Score=158.80 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=107.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCccc----cccchhhc---ccCc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQER----FRTLTSSY---YRGA 86 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~ 86 (210)
+|+++|++|||||||+++|.+.... ....++.+... ..+.+.+ ...+.+|||||... ...+...+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 6899999999999999999976531 11111112111 1122222 24789999999632 11222233 3469
Q ss_pred cEEEEEEECCCc-ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCC
Q 028353 87 QGIIMVYDVTRR-DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRV 163 (210)
Q Consensus 87 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 163 (210)
|++++|+|++++ .++..+.. |...+..... ..++|+++|+||+|+...... .+....+.... +.+++++||+++.
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCC
Confidence 999999999999 78888776 7776655422 246899999999998655443 23344455553 6789999999999
Q ss_pred CHHHHHHHHHHH
Q 028353 164 NVQQCFEELVLK 175 (210)
Q Consensus 164 ~i~~~~~~l~~~ 175 (210)
|++++|+++.+.
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.6e-24 Score=151.36 Aligned_cols=158 Identities=28% Similarity=0.438 Sum_probs=122.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|+|||||++++.+..+...+ ++.+.++....+..++..+.+.+||+||+..+...+...+..+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999988854433 3666666665566777668899999999999988888889999999999
Q ss_pred EECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 93 YDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 93 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
+|.... .++......|...+...... +.|+++++||.|+.... ...+....+......+++++||+++.|++++|++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 998887 66766663366666554433 78999999999996544 3333333444444567999999999999999998
Q ss_pred HH
Q 028353 172 LV 173 (210)
Q Consensus 172 l~ 173 (210)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 63
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=9.7e-25 Score=170.26 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=117.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECC-eEEEEEEEeCCCccc-------cccchhhcccC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGG-KKLKLAIWDTAGQER-------FRTLTSSYYRG 85 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 85 (210)
...|+|+|.|+||||||+++|++.+.. ....+.+|.......+.. ....+.+||+||... +...+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 357899999999999999999976532 222222222222222211 235689999999632 11223334668
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccC-CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN-QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (210)
++++++|+|+++.++++.+.. |...+..+... .++|+++|+||+|+........+....+....+.+++++||+++.|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 999999999998888888877 88888765322 4689999999999976554444444555555678899999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 028353 165 VQQCFEELVLKILDTP 180 (210)
Q Consensus 165 i~~~~~~l~~~~~~~~ 180 (210)
+++++++|.+.+.+..
T Consensus 316 I~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 316 LDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999886543
No 134
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-25 Score=154.18 Aligned_cols=163 Identities=20% Similarity=0.304 Sum_probs=135.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
......+|+++|..++||||++++|..++.....||.|..+....+ ..+.+++||.+|+..++..|..++.+.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 3467899999999999999999999999988888899988877666 478999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN 164 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 164 (210)
|||+|.+|++.+...+..+...+.. ..-.+.|+++.+||.|++.+.. ..++..... ...-.+..|+|.+|+|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~-~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAE-PELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcC-cccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 9999999999999998866666654 3356899999999999976533 223222222 2334588999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 028353 165 VQQCFEELVLKILDT 179 (210)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (210)
+.+.++|+.+.+.+.
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988553
No 135
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=8.2e-25 Score=171.70 Aligned_cols=171 Identities=20% Similarity=0.239 Sum_probs=120.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-ccc-------hhhcc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-RTL-------TSSYY 83 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~-------~~~~~ 83 (210)
.+.++|+++|++|||||||+++|.+..+..+.+..++|.......+.....++.+|||||.... ..+ ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4567999999999999999999999888655554444433222222223457899999997432 221 11246
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEccCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKT 161 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 161 (210)
..+|++++|+|..+ ++......|+..+.. .+.|.++|+||+|+... ...++..++...+ ..++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 78999999999765 344444435555543 24577889999998643 2344555555444 5799999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028353 162 RVNVQQCFEELVLKILDTPSLLAEGSKGLK 191 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (210)
|.|++++|+++.+.+.+.+..++.+...-.
T Consensus 201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 999999999999999999888877654433
No 136
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.93 E-value=3.6e-24 Score=143.43 Aligned_cols=170 Identities=23% Similarity=0.305 Sum_probs=143.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEE-ECCeEEEEEEEeCCCcccc-ccchhhcccC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVD-VGGKKLKLAIWDTAGQERF-RTLTSSYYRG 85 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~ 85 (210)
-.+..||+++|..++|||++++.|+.+......+ |.+. ++...+. -.+.+-.+.++||.|.... ..+-+.++.-
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 3567899999999999999999998776543332 4433 3333333 2445567999999997766 5567778899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (210)
+|++++||+..+++||+.+.. +...|..+..+..+|++|++||+|+.++..++.+.+..|+++..+..+++++.+...+
T Consensus 85 aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred CceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 999999999999999999988 8889998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCc
Q 028353 166 QQCFEELVLKILDTPSL 182 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~~~ 182 (210)
-+.|..+..++...++.
T Consensus 164 ~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 164 YEPFTYLASRLHQPQSK 180 (198)
T ss_pred hhHHHHHHHhccCCccc
Confidence 99999999999776644
No 137
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.4e-24 Score=165.91 Aligned_cols=165 Identities=17% Similarity=0.083 Sum_probs=116.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCcc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQ 87 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d 87 (210)
+|+++|+||||||||+|+|++.+....++.+++|.............++.+|||||...... .....+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999988765555444443322222222335689999999654221 1234578999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (210)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+...... ......+....+. +++++||++|.|++
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 999999999877664 224444432 46899999999998643222 2233444444444 79999999999999
Q ss_pred HHHHHHHHHHHcCCCccccccc
Q 028353 167 QCFEELVLKILDTPSLLAEGSK 188 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~ 188 (210)
++++++.+.+...+..++.+..
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~ 175 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYV 175 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCccc
Confidence 9999999999877776665533
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=2.7e-24 Score=158.23 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=109.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--c------hhhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--L------TSSY 82 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~------~~~~ 82 (210)
...++|+++|++|||||||++++++..+.. ..+....+.....+.+++. ..+.+||+||...... . ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999876422 1122222222233333332 3789999999732111 0 1123
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (210)
+..+|++++|+|++++.++..... |...+... ...++|+++|+||+|+....... .+....+.+++++||+++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 568999999999999988877655 66666543 23468999999999986543322 334455678999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028353 163 VNVQQCFEELVLKI 176 (210)
Q Consensus 163 ~~i~~~~~~l~~~~ 176 (210)
.|+++++++|.+.+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.4e-24 Score=150.76 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhcccCccEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE-----RFRTLTSSYYRGAQGII 90 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i 90 (210)
||+++|++|||||||+++|.+..+. ..++.+.++ . -.+||+||.. .+..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 222322211 1 1689999973 2233322 478999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCF 169 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~ 169 (210)
+|||++++.++... . |.... ..|+++|+||+|+.+ .....+++..++...+. +++++||+++.|++++|
T Consensus 68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999987652 2 43321 239999999999864 23455666777777776 79999999999999999
Q ss_pred HHHH
Q 028353 170 EELV 173 (210)
Q Consensus 170 ~~l~ 173 (210)
.++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=4.9e-24 Score=151.35 Aligned_cols=153 Identities=19% Similarity=0.157 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC---CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN---FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.|+++|++|||||||+++|.+.. +.... +....+.....+.+.. ...+.+|||||++.+.......++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999999643 22211 1222222222333332 4579999999998887666677889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHH---hCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFARE---YGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~ 166 (210)
|+|+++....+ ... .+..+.. ....|+++|+||+|+..... ...++...+... .+.+++++||+++.|++
T Consensus 81 V~d~~~~~~~~-~~~-~~~~~~~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 81 VVAADEGIMPQ-TRE-HLEILEL---LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEECCCCccHh-HHH-HHHHHHH---hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence 99998732211 111 1112221 11248999999999965431 122334444444 35789999999999999
Q ss_pred HHHHHHHH
Q 028353 167 QCFEELVL 174 (210)
Q Consensus 167 ~~~~~l~~ 174 (210)
++++++..
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99988753
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.5e-23 Score=146.22 Aligned_cols=154 Identities=50% Similarity=0.791 Sum_probs=120.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC
Q 028353 19 MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 19 i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
++|++|+|||||++++.+... .....+...+..............+.+||+||...+...+...+..+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998877 3443333366777777777778999999999988888877888999999999999999
Q ss_pred cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE-GINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
+.++..... |...........++|+++++||.|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888877 42222223446679999999999986554443332 3344455578899999999999999999985
No 142
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=154.53 Aligned_cols=170 Identities=40% Similarity=0.589 Sum_probs=135.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||+++|..+.+...++ +.+..+...........+.+.+|||+|++.+...+..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 3999999999999999999999999987776 666666666666665588999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHh---CCeEEEE
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREY---GCLFIEC 157 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 157 (210)
+|..+..++..+...|...+..... ...|+++++||+|+.... .............. ...++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999977777777779988876432 468999999999996553 22222222222222 2238999
Q ss_pred ccC--CCCCHHHHHHHHHHHHHcCCCccc
Q 028353 158 SAK--TRVNVQQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 158 Sa~--~~~~i~~~~~~l~~~~~~~~~~~~ 184 (210)
|++ .+.++.++|..++..+.+......
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 999 999999999999999976654443
No 143
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-23 Score=139.16 Aligned_cols=157 Identities=24% Similarity=0.370 Sum_probs=133.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+.++|+.+|..++||||++..|+.+......+|.|..+....+ ..+.+++||.+|+...+.+|+.++.+..++|+|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 4789999999999999999999998887777888887776655 678999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-----CeEEEEccCCCCCHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (210)
+|..+.+..+..++.+...+.. ..-.+.|++|.+||.|++++ ...+++..+..... ..+.++++.++.|+.+
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~-~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIIND-REMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCC-HhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999999999998878777765 34557899999999999865 44555555544332 3388999999999999
Q ss_pred HHHHHHHHH
Q 028353 168 CFEELVLKI 176 (210)
Q Consensus 168 ~~~~l~~~~ 176 (210)
-|.|+.+.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998865
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=3.3e-24 Score=157.40 Aligned_cols=155 Identities=20% Similarity=0.228 Sum_probs=103.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----------cccccch
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----------ERFRTLT 79 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~~~~~ 79 (210)
....++|+++|++|+|||||+++|.+..+. ....++.++....+... .+.+|||||. +.+...+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 345689999999999999999999987754 32344555544444333 5899999993 4444444
Q ss_pred hhcc----cCccEEEEEEECCCcccHHH---------HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028353 80 SSYY----RGAQGIIMVYDVTRRDTFTN---------LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF 146 (210)
Q Consensus 80 ~~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (210)
..++ ..++++++|+|.++...+.. ....+...+. ..++|+++|+||+|+.... .+...++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 4443 34678889998765322100 0011222222 3478999999999986443 2344555
Q ss_pred HHHhCC---------eEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 147 AREYGC---------LFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 147 ~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
....+. +++++||++| |+++++++|.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 555554 4899999999 999999999998743
No 145
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=1.9e-23 Score=147.14 Aligned_cols=147 Identities=23% Similarity=0.200 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcccCc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYRGA 86 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~ 86 (210)
++|+++|++|+|||||++++++..........+.+.......+......+.+|||||....... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998775333332233222222222223457899999997554321 23456789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|+|++++.+...... +.. ....|+++|+||+|+...... .....+.+++++||+++.|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 99999999999887766544 221 346899999999999654433 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 028353 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=6.5e-23 Score=146.21 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.|+++|++|+|||||+++|....+..... ....+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887755422 22222222223322 13577899999999888888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHHHH------HhCCeEEEEccCCCCCHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINFAR------EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~ 166 (210)
|+++........ ....+. ..++|+++|+||+|+....... .+....+.. ....+++++|++++.|++
T Consensus 82 d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 999864322222 112222 2468999999999986432111 111111111 123579999999999999
Q ss_pred HHHHHHHHHHH
Q 028353 167 QCFEELVLKIL 177 (210)
Q Consensus 167 ~~~~~l~~~~~ 177 (210)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988653
No 147
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=3.6e-24 Score=148.56 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--cCc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--RGA 86 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~ 86 (210)
|+|+++|.||||||||+|+|++.+. .....+|.|.......+......+.++|+||...+.+ ....++ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 6899999999999999999998873 3444566666655544433336788899999433222 223333 589
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|+|+++.+ .... +...+. ..++|+++|+||+|......+.. +...+....++|++++||+++.|++
T Consensus 80 D~ii~VvDa~~l~---r~l~-l~~ql~----e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 80 DLIIVVVDATNLE---RNLY-LTLQLL----ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SEEEEEEEGGGHH---HHHH-HHHHHH----HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CEEEEECCCCCHH---HHHH-HHHHHH----HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 9999999998743 3222 223333 34689999999999854433322 2566777789999999999999999
Q ss_pred HHHHHH
Q 028353 167 QCFEEL 172 (210)
Q Consensus 167 ~~~~~l 172 (210)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 998865
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=5.1e-23 Score=145.27 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=106.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--CccEE
Q 028353 19 MIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR--GAQGI 89 (210)
Q Consensus 19 i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~ 89 (210)
++|++|+|||||++++.+..+. ..++....+.....+.+++ ..+.+|||||...+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987632 2233333334444455554 5789999999876554 2445554 89999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|+|+.+...... |...+. ..++|+++|+||+|+.....+... ...+....+.+++++||+++.|+++++
T Consensus 79 i~v~d~~~~~~~~~----~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 79 VNVVDATNLERNLY----LTLQLL----ELGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEEeeCCcchhHHH----HHHHHH----HcCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 99999998654322 322332 236899999999999765444333 456677778999999999999999999
Q ss_pred HHHHHHH
Q 028353 170 EELVLKI 176 (210)
Q Consensus 170 ~~l~~~~ 176 (210)
.++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998864
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=3.7e-23 Score=151.00 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCCC-------------CCceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS--DNFEELS-------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT 79 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (210)
-+|+++|++++|||||+++|++ +.+...+ .+.+.++......+.+..+.+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 134555555555556667889999999999999889
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------hC
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------YG 151 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 151 (210)
..+++.+|++++|+|+++.. +..... ++..+. ..++|+++|+||+|+..... ...+++..+... .+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 99999999999999998753 222222 333332 24689999999999964332 123344444422 26
Q ss_pred CeEEEEccCCCCCHHHH------HHHHHHHHHc
Q 028353 152 CLFIECSAKTRVNVQQC------FEELVLKILD 178 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~------~~~l~~~~~~ 178 (210)
++++++||++|.|+.+. ++++++.+..
T Consensus 157 ~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~ 189 (194)
T cd01891 157 FPVLYASAKNGWASLNLEDPSEDLEPLFDTIIE 189 (194)
T ss_pred cCEEEeehhccccccccccchhhHHHHHHHHHh
Confidence 78999999999887433 4555555543
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1.8e-23 Score=150.10 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=103.7
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc----ccc---hhhcccCccEEE
Q 028353 19 MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----RTL---TSSYYRGAQGII 90 (210)
Q Consensus 19 i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~d~~i 90 (210)
++|++|||||||+++|.+... ...++....+.....+.+. ....+.+||+||.... ... +...+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998864 1122211111111222233 1456899999996321 122 233467899999
Q ss_pred EEEECCCc------ccHHHHHHHHHHHHhhhccC------CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028353 91 MVYDVTRR------DTFTNLSDVWAKEIDLYSTN------QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 91 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (210)
+|+|+.+. .++..... |...+...... .+.|+++|+||+|+..................+.+++++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999988 46666655 55555543221 4689999999999965544333322334444567799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028353 159 AKTRVNVQQCFEELVLK 175 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~ 175 (210)
|+++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=3.1e-23 Score=139.75 Aligned_cols=114 Identities=33% Similarity=0.620 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFE---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
||+|+|++|||||||+++|.+..+. ...+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 2223555556555667778887899999999998888888889999999999
Q ss_pred EECCCcccHHHHHHH--HHHHHhhhccCCCCcEEEEEeCCC
Q 028353 93 YDVTRRDTFTNLSDV--WAKEIDLYSTNQDCIKLLVGNKVD 131 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D 131 (210)
||++++.+++.+..+ |+..+.. ...++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence 999999999998663 4444443 245699999999998
No 152
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=8.1e-23 Score=159.40 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc----cc---hhhcccC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR----TL---TSSYYRG 85 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~---~~~~~~~ 85 (210)
...|+++|.|+||||||+++|+..... ..++.+......-.+.+++ ...+.+||+||..... .+ +...+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 367999999999999999999976532 1222111111222223322 3678999999964221 22 2233567
Q ss_pred ccEEEEEEECCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 86 AQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
++++++|+|+++. ++++.+.. |..++..+.. ..++|++||+||+|+..... ..+..+.+....+.+++++||++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence 9999999999986 56777766 7766665432 24689999999999965533 23344555556678899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
+.|+++++.++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=1.2e-22 Score=164.07 Aligned_cols=152 Identities=24% Similarity=0.229 Sum_probs=111.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS 81 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~ 81 (210)
...++|+++|++|+|||||+|+|++.....+...++++. ....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 456899999999999999999999876543444334333 334444544 55789999998654432 234
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
.++.+|++++|+|++++.+++.. |+..+. ..++|+++|+||+|+... ....+....+.+++++||++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence 67899999999999998887654 443332 246899999999998643 12344556678899999998
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028353 162 RVNVQQCFEELVLKILDT 179 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (210)
.|++++|+.+.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999999988654
No 154
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=138.81 Aligned_cols=157 Identities=24% Similarity=0.385 Sum_probs=125.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
....+.++|..++|||||++.+..+.+.+.. |+.|.+.+ .+....+.+.+||.||+..+.++|..+++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 4578999999999999999999988876544 47776554 445577889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-----FAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|+|+++++.+...+..+...+.. ..-.++|++|.|||.|++.+ +....... -.....+-+|-+|+++..|++
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 99999999998888867666654 44568999999999998755 22222111 112223448999999999999
Q ss_pred HHHHHHHHHH
Q 028353 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
.+.+|+++..
T Consensus 172 ~~~~Wli~hs 181 (186)
T KOG0075|consen 172 ITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 155
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=9.9e-23 Score=157.71 Aligned_cols=168 Identities=16% Similarity=0.134 Sum_probs=116.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--------TLTSSYYR 84 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~ 84 (210)
+.-.|+++|++|||||||+|+|++.+....++.+.++..............+.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3456999999999999999999998876665544444333332222234789999999964432 22334567
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (210)
.+|++++|+|+++..+. ....+...+. ..+.|+++|+||+|+........+....+....+ .+++++||+++.
T Consensus 84 ~~D~il~vvd~~~~~~~--~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP--GDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred cCCEEEEEEeCCCCCCh--hHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 89999999999984322 2221333333 3468999999999996433333334445544444 569999999999
Q ss_pred CHHHHHHHHHHHHHcCCCccccc
Q 028353 164 NVQQCFEELVLKILDTPSLLAEG 186 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~~~ 186 (210)
|++++++++.+.+...+..++.+
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~ 180 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPED 180 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999997777666554
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=8.4e-23 Score=167.24 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=110.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR 84 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 84 (210)
...+|+|+|.+|||||||+++|++........+++.+..............+.+|||||.+. +...+...++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 34789999999999999999999887655555666555444443333345688999999752 2233455688
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (210)
.+|++|+|+|+++..++... . |...+. ..++|+++|+||+|+.... .+....+ ..+. .++++||++|.
T Consensus 117 ~aD~il~VvD~~~~~s~~~~-~-i~~~l~----~~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 117 TADAVLFVVDATVGATATDE-A-VARVLR----RSGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred hCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 99999999999998765432 2 444444 2568999999999986432 1222222 2343 35799999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028353 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++|+++.+.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999998865
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=6.4e-23 Score=144.49 Aligned_cols=147 Identities=22% Similarity=0.153 Sum_probs=99.5
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCccEE
Q 028353 18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQGI 89 (210)
Q Consensus 18 ~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d~~ 89 (210)
+++|++|+|||||+++|++..........+.+..............+.+|||||...... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 478999999999999999775322222222222222222222346789999999877543 334567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQC 168 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (210)
++|+|+.+..+.... . +...+. ..+.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 81 i~v~d~~~~~~~~~~-~-~~~~~~----~~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 81 LFVVDGREGLTPADE-E-IAKYLR----KSKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEeccccCCccHH-H-HHHHHH----hcCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 999999876554432 1 233333 235899999999999654322 222334555 6899999999999999
Q ss_pred HHHHHHH
Q 028353 169 FEELVLK 175 (210)
Q Consensus 169 ~~~l~~~ 175 (210)
|+++.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=9.1e-23 Score=167.02 Aligned_cols=164 Identities=20% Similarity=0.173 Sum_probs=113.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCcc----------ccccc-
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQE----------RFRTL- 78 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~- 78 (210)
...++|+++|.+|+|||||+++|++.......+..+++. ....+.+++. .+.+|||||.. .+...
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 356999999999999999999999887644444333333 3334455554 45799999952 12222
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHH-HHHHhCCeEE
Q 028353 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGIN-FAREYGCLFI 155 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~ 155 (210)
....++.+|++++|+|++++.++.... +...+. ..++|+|+|+||+|+...... ..+++.. +.....++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 360 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV 360 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence 123578999999999999998887764 333332 356899999999999643221 1112222 1222346899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028353 156 ECSAKTRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
++||++|.|++++|..+.+.+......+
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~~~~~~i 388 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALESWDTRI 388 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999998886555543
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=3.3e-22 Score=162.60 Aligned_cols=165 Identities=22% Similarity=0.150 Sum_probs=112.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----------TS 80 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~ 80 (210)
...++|+++|.+++|||||+++|++.......+..+++.......+......+.+|||||....... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 4569999999999999999999998775444444444443333232222347889999996543321 12
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-H----hCCeEE
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-E----YGCLFI 155 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~ 155 (210)
..++.+|++++|+|++++.+..... +...+. ..++|+++|+||+|+.... ...++...... . ..++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 3578899999999999987776553 333332 3468999999999996211 11112221211 1 247899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028353 156 ECSAKTRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
++||++|.|++++|+++.+.+.......
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i 350 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRI 350 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999998876554433
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1e-22 Score=165.19 Aligned_cols=148 Identities=23% Similarity=0.215 Sum_probs=109.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSY 82 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 82 (210)
..++|+++|++|+|||||+|+|++.+.....+.++++. ....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 45899999999999999999999877543333333333 333444444 56899999997654332 2235
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (210)
+..+|++++|+|++++.+++.... |.. ..+.|+++|+||+|+....... ...+.+++++||+++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg 355 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG 355 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence 788999999999999888775433 432 3468999999999996443221 234567999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028353 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
.|++++++++.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998854
No 161
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=135.74 Aligned_cols=175 Identities=25% Similarity=0.498 Sum_probs=148.9
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
...-.+||.++|++..|||||+-.+.++.+.+.+. +.|.++....+.+.+.++.+.+||.+|++++..+.+.....+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34456999999999999999999999998876665 89999999999999999999999999999999888888889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC----CCC-ceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK----ESE-RVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl----~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
++++||++.+.++..+.. |.+..+. .++.-+| |+||+|.|+ +.. ..-...+++.+++-++++.+.||+..+.
T Consensus 96 IlFmFDLt~r~TLnSi~~-WY~QAr~-~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKE-WYRQARG-LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI 172 (205)
T ss_pred EEEEEecCchHHHHHHHH-HHHHHhc-cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence 999999999999999999 7776654 3455678 788999996 211 1123345788889999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcccccc
Q 028353 164 NVQQCFEELVLKILDTPSLLAEGS 187 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~~~~ 187 (210)
|+..+|.-++.+++.-+...++..
T Consensus 173 Nv~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred cHHHHHHHHHHHHhCCceeccccc
Confidence 999999999999998887776543
No 162
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=3.7e-22 Score=144.89 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=110.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT---------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
+|+++|.+|+|||||+++|.+......... .+.+.......+......+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999998766543321 11222222222333456899999999988888888
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH---------
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFARE--------- 149 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~--------- 149 (210)
..++.+|++++|+|+.++.+.... . ++.... ..+.|+++|+||+|+...... ..+.+......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-E-HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-H-HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 888999999999999887654322 2 333332 257899999999999653221 12233333332
Q ss_pred -----hCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 150 -----YGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 150 -----~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
...+++++||+++.|+++++.++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346799999999999999999999886
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=6.1e-22 Score=165.14 Aligned_cols=157 Identities=21% Similarity=0.262 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCC-------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDN-------FEELS-------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQER 74 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~-------~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~ 74 (210)
.-+|+++|++++|||||+++|+... +...+ ...+.++....+.+ ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 11111 12355554433333 46678999999999999
Q ss_pred cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--
Q 028353 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-- 152 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 152 (210)
+...+..+++.+|++|+|+|+++..+...... |..... .++|+++|+||+|+.... ..+...++....+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDA 154 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCc
Confidence 99888999999999999999999877776655 443332 367999999999986432 12223444455555
Q ss_pred -eEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 153 -LFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 153 -~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+++++||++|.|++++|+++.+.+..
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 38999999999999999999988743
No 164
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=150.50 Aligned_cols=172 Identities=19% Similarity=0.129 Sum_probs=127.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--------ccchhhcc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--------RTLTSSYY 83 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~ 83 (210)
.+.--|+++|.||+|||||+|++.+.+.+..++-+.+|......-+.....++.++||||.... .......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999988886777776666666666889999999994332 23344567
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (210)
..+|++++|+|+.+...-.. ...+..+. ..+.|+++++||+|..............+.....+ .++++||++|
T Consensus 84 ~dvDlilfvvd~~~~~~~~d--~~il~~lk----~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGD--EFILEQLK----KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred ccCcEEEEEEeccccCCccH--HHHHHHHh----hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 89999999999998544321 11233332 24679999999999866555323333333333333 5999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcccccccC
Q 028353 163 VNVQQCFEELVLKILDTPSLLAEGSKG 189 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~~~~~~~~ 189 (210)
.|++.+.+.+...+.+.+..++.+.-.
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~it 184 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQIT 184 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChhhcc
Confidence 999999999999999999888765443
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.3e-21 Score=156.37 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccc----ccchh---hcccCc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERF----RTLTS---SYYRGA 86 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~----~~~~~---~~~~~~ 86 (210)
..|+|+|.|+||||||+++|++.+.. ....+.+|.......+... ...+.+||+||...- ..+.. ..+..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 48999999999999999999977632 1112222222222222112 456899999996321 12222 335679
Q ss_pred cEEEEEEECCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028353 87 QGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (210)
+++++|+|+++. ++++.... |..++..+.. ..++|++||+||+|+... .+....+....+.+++++||+++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence 999999999865 56666655 7777766532 246899999999998432 23445566666678999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 028353 163 VNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~ 182 (210)
.|+++++.++.+.+.+.+..
T Consensus 313 eGI~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 313 QGLDELLYAVAELLEETPEF 332 (424)
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 99999999999988776543
No 166
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=4.3e-22 Score=156.64 Aligned_cols=154 Identities=21% Similarity=0.177 Sum_probs=106.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-cc--------cccchhh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-ER--------FRTLTSS 81 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-~~--------~~~~~~~ 81 (210)
...++|+++|.+|+|||||+|+|++.... ...+....+.....+.+.+ ...+.+|||+|. .. +... ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 35589999999999999999999987642 1222222223334445532 247899999997 21 1111 12
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
.+.++|++++|+|++++.++..... |...+... ...+.|+++|+||+|+..... ...+ .....+++++||++
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAkt 336 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKT 336 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccC
Confidence 4678999999999999988777655 55555543 234689999999999864322 1111 11224689999999
Q ss_pred CCCHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLK 175 (210)
Q Consensus 162 ~~~i~~~~~~l~~~ 175 (210)
+.|+++++++|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 167
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=8e-22 Score=139.98 Aligned_cols=156 Identities=17% Similarity=0.088 Sum_probs=105.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRG 85 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~ 85 (210)
..+|+++|++|+|||||++++.+............+..............+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999876543333222222222233344457889999999654332 22345778
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCCC
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 164 (210)
+|++++|+|++++.+. ....+...+.. .+.|+++|+||+|+........+....+.... ..+++++|++++.|
T Consensus 83 ~d~i~~v~d~~~~~~~--~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 83 VDLVLFVVDASEPIGE--GDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CCEEEEEEECCCccCc--hHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 9999999999987222 12213333332 25799999999998643333233333444444 36799999999999
Q ss_pred HHHHHHHHHHH
Q 028353 165 VQQCFEELVLK 175 (210)
Q Consensus 165 i~~~~~~l~~~ 175 (210)
+++++++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999999765
No 168
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=6.3e-22 Score=145.35 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEEC-----------------------------C----
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVG-----------------------------G---- 59 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-----------------------------~---- 59 (210)
++|+++|+.|+|||||++.+.+... .......+.++......+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5799999999999999999975421 1111111111111100000 1
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV- 138 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~- 138 (210)
....+.|||+||++.+...+...+..+|++++|+|++++.........|. .+.. ....|+++|+||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEI---MGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHH---cCCCcEEEEEEchhccCHHHHH
Confidence 12678999999998888877788889999999999997421111112122 2221 122478999999999643221
Q ss_pred -cHHHHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 139 -TKKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 139 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
..+++..++... +.+++++||+++.|++++|+++.+.+.+
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 123334444332 5679999999999999999999887644
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=1.5e-21 Score=139.57 Aligned_cols=154 Identities=25% Similarity=0.182 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCcccccc-----------chh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRT-----------LTS 80 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~ 80 (210)
.++|+++|++|+|||||++++.+..........+.+.. ...+..++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 57899999999999999999998764332222222222 22233343 4578999999643311 112
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HHh----CCeEE
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-REY----GCLFI 155 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~ 155 (210)
..+..+|++++|+|++++.+..... +..... ..+.|+++++||+|+........+...... ... ..+++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 3457899999999999987765432 222222 245899999999999655322222222222 222 36799
Q ss_pred EEccCCCCCHHHHHHHHHHH
Q 028353 156 ECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~ 175 (210)
++||+++.|+++++.++.+.
T Consensus 154 ~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 154 FISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccCCCCHHHHHHHHHHh
Confidence 99999999999999988764
No 170
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.1e-21 Score=143.00 Aligned_cols=158 Identities=18% Similarity=0.122 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CCCCCC------CCceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD----NFEELS------PTIGVDFKVKYVD----------VGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~----~~~~~~------~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~ 74 (210)
+||+++|++++|||||+++|+.. .+.... .+....+....+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111111 1222222222222 123467899999999866
Q ss_pred cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH----
Q 028353 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR---- 148 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~---- 148 (210)
+..........+|++++|+|+.+......... +. ... ..+.|+++++||+|+...... ..++......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGE----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 54433344567899999999998655444322 22 111 125799999999998643221 1222222211
Q ss_pred ---HhCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 149 ---EYGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 149 ---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
..+++++++||+++.|++++++++.+.+.-
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 135689999999999999999999988754
No 171
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1e-21 Score=158.99 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=111.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG 85 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~ 85 (210)
....|+|+|.|+||||||+++|++..... ...+++|.......+......+.+||+||..... ......+..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkI-adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKI-ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccc-cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 34689999999999999999999765421 2223333332222333344679999999953211 112234678
Q ss_pred ccEEEEEEECCCc----ccHHHHHHHHHHHHhhhc----------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028353 86 AQGIIMVYDVTRR----DTFTNLSDVWAKEIDLYS----------TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151 (210)
Q Consensus 86 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (210)
+|++|+|+|+++. +.+..+.. |...+..+. ...++|++||+||+|+++..... +.........+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARG 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcC
Confidence 9999999999863 34444443 444454433 12468999999999996543322 22233344557
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028353 152 CLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+++++||+++.|+++++.+|.+.+.+.+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 8999999999999999999999988776543
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=7.3e-22 Score=139.38 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----chhhcccCccEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----LTSSYYRGAQGIIM 91 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~~~~~~~d~~i~ 91 (210)
+|+++|++|+|||||++++.+.. .....+.+. .+... .+||+||...... .....+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999988653 211112221 12222 2699999632222 11233689999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--eEEEEccCCCCCHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC--LFIECSAKTRVNVQQCF 169 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~ 169 (210)
|+|+++..++... |+..+ ..++|+++++||+|+... ..+....++...++ +++++||+++.|++++|
T Consensus 71 v~d~~~~~s~~~~---~~~~~-----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 71 VHGANDPESRLPA---GLLDI-----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEeCCCcccccCH---HHHhc-----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 9999988776332 33222 235789999999998542 34556677777775 89999999999999999
Q ss_pred HHHHHHHHc
Q 028353 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
+++.+.+.+
T Consensus 140 ~~l~~~~~~ 148 (158)
T PRK15467 140 DYLASLTKQ 148 (158)
T ss_pred HHHHHhchh
Confidence 999887643
No 173
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=133.52 Aligned_cols=161 Identities=24% Similarity=0.340 Sum_probs=125.7
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
..+.+||+++|-.++|||||++.|.+.+.....++.|.....+.+. .++.+++||.+|+...+..|..++.+.|++|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 4788999999999999999999999999888888888766555443 4789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH-HH--HHHHHHhCCeEEEEccCCCCCHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK-EG--INFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~--~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
||+|.+|...|+.+...+...+.. -+-..+|+++.+||.|+.-+..+... .. ....+.....+.+||+.+++|+.+
T Consensus 91 yVIDS~D~krfeE~~~el~ELlee-eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEE-EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhh-hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 999999998898887755554443 34567999999999998533221111 00 011112234589999999999999
Q ss_pred HHHHHHHH
Q 028353 168 CFEELVLK 175 (210)
Q Consensus 168 ~~~~l~~~ 175 (210)
..+|+...
T Consensus 170 g~~wv~sn 177 (185)
T KOG0074|consen 170 GSDWVQSN 177 (185)
T ss_pred cchhhhcC
Confidence 99988643
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.5e-21 Score=155.20 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc-------cchhhcccCc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR-------TLTSSYYRGA 86 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 86 (210)
..|+|+|.||||||||+|+|++.+. .....+.+|.......+... ...+.++|+||...-. ......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4799999999999999999997664 33333334333333222222 3458999999964321 1122347789
Q ss_pred cEEEEEEECC---CcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEccC
Q 028353 87 QGIIMVYDVT---RRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAK 160 (210)
Q Consensus 87 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 160 (210)
|++++|+|++ +...++.... |+..+..+.. ..+.|+++|+||+|+.....+ .+....+....+ .+++++||+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CEEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 9999999988 4556666655 6666665421 236899999999998644332 233444444444 468999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCccccccc
Q 028353 161 TRVNVQQCFEELVLKILDTPSLLAEGSK 188 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 188 (210)
++.|+++++++|.+.+.+.+..++.+..
T Consensus 317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~ 344 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENPREEAEEAE 344 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCcccCCcccc
Confidence 9999999999999999887766655443
No 175
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=6.2e-21 Score=139.95 Aligned_cols=119 Identities=18% Similarity=0.314 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc-cEEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD 94 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 94 (210)
+|+++|++|||||||+++|..+.+....++.............+....+.+||+||+..+...+...++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988766555443333322222224457799999999999988888888888 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC
Q 028353 95 VTRR-DTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 95 ~~~~-~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~ 134 (210)
+.+. .++.....+|...+... ....++|+++++||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9997 66777766454444321 1235799999999999854
No 176
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=6.9e-21 Score=158.21 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=109.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+..+|+++|++++|||||+++|.+..+..... ....+.....+..++. ..+.+|||||++.+..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3466899999999999999999999877654332 2223333333343322 2789999999999999888889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CeEEEEccC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAK 160 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 160 (210)
++|+|+++...-+.... + .. ....++|+++++||+|++.. ..+.+.......+ .+++++||+
T Consensus 163 ILVVda~dgv~~qT~e~-i-~~----~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEA-I-SH----AKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEEECCCCCCHhHHHH-H-HH----HHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 99999987543322222 2 11 12356899999999998643 2233333332222 469999999
Q ss_pred CCCCHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVL 174 (210)
Q Consensus 161 ~~~~i~~~~~~l~~ 174 (210)
+|.|++++|+++..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999874
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=2.8e-21 Score=157.19 Aligned_cols=152 Identities=24% Similarity=0.224 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhcccCcc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSSYYRGAQ 87 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~d 87 (210)
+|+++|.+|||||||+++|++.........++.+.......+......+.+|||||.. .+.......+..+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999988754444445554433333333334569999999963 33344556788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (210)
++++|+|+.++.+.... . +...+.. .++|+++|+||+|+....... . .+..+++ +++++||++|.|+.
T Consensus 81 ~vl~vvD~~~~~~~~d~-~-i~~~l~~----~~~piilVvNK~D~~~~~~~~----~-~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 81 VILFVVDGREGLTPEDE-E-IAKWLRK----SGKPVILVANKIDGKKEDAVA----A-EFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred EEEEEEeCCCCCCHHHH-H-HHHHHHH----hCCCEEEEEECccCCcccccH----H-HHHhcCCCCeEEEeCCcCCChH
Confidence 99999999886554432 1 3333432 468999999999986543221 1 1345676 69999999999999
Q ss_pred HHHHHHHHHHHc
Q 028353 167 QCFEELVLKILD 178 (210)
Q Consensus 167 ~~~~~l~~~~~~ 178 (210)
++++++.+.+.+
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999988754
No 178
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=9.7e-21 Score=138.40 Aligned_cols=159 Identities=20% Similarity=0.182 Sum_probs=106.7
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----------RFRTL 78 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~ 78 (210)
......+|+++|++|+|||||+++|++..+ ....++.+.+.....+.. ...+.+|||||.. .+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 445779999999999999999999998763 344445555544333332 3679999999942 22223
Q ss_pred hhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHHhCCe
Q 028353 79 TSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFAREYGCL 153 (210)
Q Consensus 79 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 153 (210)
...+++ ..+++++|+|.+++.+..... +...+. ..+.|+++++||+|+....... .+.+.........+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 333344 346888999988765543321 222232 2468899999999986443221 22233444444678
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHH
Q 028353 154 FIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
++++||+++.|++++++.|.+.+.
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999987763
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=4.9e-21 Score=138.06 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=100.8
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRT 77 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~ 77 (210)
.+.....+|+++|++|+|||||++++++..+ ....++.+.+.....+..++ .+.+||+||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 4457789999999999999999999998763 33444555555444444432 589999999532 222
Q ss_pred chhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhC-
Q 028353 78 LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREYG- 151 (210)
Q Consensus 78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 151 (210)
....+++ .++++++|+|++++.+..... +...+. ..++|+++++||+|+...... ..++++..+...+
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence 2233444 458999999998866555442 233333 246899999999998644322 2344455555543
Q ss_pred -CeEEEEccCCCCCHH
Q 028353 152 -CLFIECSAKTRVNVQ 166 (210)
Q Consensus 152 -~~~~~~Sa~~~~~i~ 166 (210)
.+++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 479999999999974
No 180
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.4e-22 Score=132.62 Aligned_cols=163 Identities=22% Similarity=0.322 Sum_probs=128.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
++..+|+++|--|+||||+..++.-++.....|+++.......+ +..++.+||+.|+-.+++.|+.++.+.|++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 47899999999999999999999988877777888877664443 77889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---eecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
|+|.+|.+........+...+.+ ..-....++|++||+|.+... ++.......-.++.-+.++++||.+|+|++..
T Consensus 92 VVDssd~dris~a~~el~~mL~E-~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQE-EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhcc-HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 99999998877666655555543 223457789999999985331 11222222233344467999999999999999
Q ss_pred HHHHHHHHHcC
Q 028353 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
++|+.+-+..+
T Consensus 171 ~DWL~~~l~~~ 181 (182)
T KOG0072|consen 171 MDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHhcc
Confidence 99999988543
No 181
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=6e-21 Score=153.43 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchhh------cccC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--RTLTSS------YYRG 85 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~~~ 85 (210)
.+|+++|.+|||||||+|+|++.+... ..+....+.....+.+.+. ..+.+|||+|.... ...+.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 689999999999999999999876531 2222222222233444332 25789999997321 222222 3578
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCC
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 164 (210)
+|++++|+|++++.++..+.. |...+... ...++|+++|+||+|+...... ... ....+.+ ++.+||++|.|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCC
Confidence 999999999999988777654 54545442 2346899999999998543111 111 1123555 58899999999
Q ss_pred HHHHHHHHHHHHHcC
Q 028353 165 VQQCFEELVLKILDT 179 (210)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (210)
++++++++.+.+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988544
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=1.2e-20 Score=159.12 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=113.0
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
..+..+|+|+|++++|||||+++|....+..... +.....+...+..++....+.||||||++.+..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999876653221 2222233333444455688999999999999999988899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-------HHHhC--CeEEEEc
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-------AREYG--CLFIECS 158 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~S 158 (210)
++|+|+|+++......... |. .+ ...++|+||++||+|++... .+.+... ...++ ++++++|
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~-~~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-IN-YI----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HH-HH----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 9999999988543332222 22 12 23568999999999986532 1222221 12233 6899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028353 159 AKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~~ 176 (210)
|++|.|++++++++....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999988753
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.1e-20 Score=153.82 Aligned_cols=163 Identities=23% Similarity=0.155 Sum_probs=111.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----------TS 80 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~ 80 (210)
...++|+++|.+|+|||||+++|++.......+..+++.......+......+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 4579999999999999999999998765444444555554444333334456789999995432111 12
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH----HhCCeEEE
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR----EYGCLFIE 156 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (210)
..++.+|++++|+|++++.+..... +...+. ..++|+++|+||+|+.+.... .+....+.. ...+++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence 3577899999999999987766543 333332 346899999999998633211 111111111 12478999
Q ss_pred EccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 157 CSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
+||+++.|++++++.+.+...+...
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~ 348 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANR 348 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999887655443
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=6.6e-21 Score=155.22 Aligned_cols=148 Identities=23% Similarity=0.200 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR 84 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 84 (210)
.+|+++|.+|||||||+++|.+.........++.+. .......++ ..+.+|||||... +.......+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999877543333334333 223334444 7789999999876 2223445678
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 163 (210)
.+|++++|+|+.++.+..... +...+.. .+.|+++|+||+|+.... +...++ ...++. ++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~~----~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEE--IAKILRK----SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999999865443221 2222332 368999999999975321 222222 345654 8999999999
Q ss_pred CHHHHHHHHHHH
Q 028353 164 NVQQCFEELVLK 175 (210)
Q Consensus 164 ~i~~~~~~l~~~ 175 (210)
|++++++++...
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999883
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=1.4e-20 Score=157.21 Aligned_cols=160 Identities=20% Similarity=0.245 Sum_probs=115.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC--CC---------CCC---CCceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FE---------ELS---PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQ 72 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~--~~---------~~~---~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~ 72 (210)
+..-+|+++|+.++|||||+.+|+... +. +.. ...+.++....+.+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999997532 11 000 12344443322222 556789999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (210)
..+...+...++.+|++|+|+|+++......... |.... ..++|+++|+||+|+..... .....++....++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~ 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCC
Confidence 9999888899999999999999999876665544 43332 24679999999999864321 1122334444555
Q ss_pred e---EEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 153 L---FIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 153 ~---~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
+ ++++||++|.|+++++++|.+.+...
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 4 89999999999999999999887543
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.2e-20 Score=157.34 Aligned_cols=157 Identities=19% Similarity=0.211 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN---FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+.|+++|++++|||||+++|++.. +++.+ .....+.....+..++ ..+.+||+||++.+...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 478999999999999999999643 22222 1333333333344444 78999999999998888888889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCeEEEEccCCCC
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREY----GCLFIECSAKTRV 163 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~ 163 (210)
+|+|+++...-+.. + .+..+. ..++| ++||+||+|+.+...+ ..+++..+.... +++++++||++|.
T Consensus 79 LVVDa~~G~~~qT~-e-hl~il~----~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 79 LVVDADEGVMTQTG-E-HLAVLD----LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEEECCCCCcHHHH-H-HHHHHH----HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999984322221 1 222222 23567 9999999999754432 233455555544 4789999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028353 164 NVQQCFEELVLKILDT 179 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (210)
|+++++.++...+...
T Consensus 153 GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 153 GIGELKKELKNLLESL 168 (581)
T ss_pred CchhHHHHHHHHHHhC
Confidence 9999999988776543
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=9.4e-21 Score=133.33 Aligned_cols=151 Identities=22% Similarity=0.153 Sum_probs=103.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-------chhhcccCccEEE
Q 028353 19 MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRT-------LTSSYYRGAQGII 90 (210)
Q Consensus 19 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~i 90 (210)
++|++|+|||||++++.+..........+.+........... ...+.+||+||...... .....++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998765433332222222222222111 56799999999765543 3334678999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
+|+|+++........ +.... ...+.|+++|+||.|+......... .........+.+++++|++++.|+++
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 999999988766553 22222 2457899999999998654333221 12233334467899999999999999
Q ss_pred HHHHHHHH
Q 028353 168 CFEELVLK 175 (210)
Q Consensus 168 ~~~~l~~~ 175 (210)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99999865
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=2.8e-20 Score=158.97 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=111.2
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSS 81 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~ 81 (210)
......+|+++|.++||||||+++|++.....+...++.+..............+.+|||||... +......
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 33456789999999999999999999887655555666666555444433446789999999653 2233345
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccC
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (210)
.+..+|++++|+|+++..... ...|...+. ..++|+++|+||+|+.... .....+ ...+. .++++||+
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~--d~~i~~~Lr----~~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~ 419 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTST--DERIVRMLR----RAGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAM 419 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHH--HHHHHHHHH----hcCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECC
Confidence 678999999999998753322 222444444 3578999999999985431 111222 12333 36799999
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 028353 161 TRVNVQQCFEELVLKILD 178 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~ 178 (210)
+|.|++++++++++.+.+
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999998854
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=3.5e-20 Score=157.52 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=108.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+...|+|+|+.++|||||+++|....+.... .....+.....+..+ ...++||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 467789999999999999999999877664322 122222222333333 36799999999999999888888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-------HHHHhC--CeEEEEccC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-------FAREYG--CLFIECSAK 160 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~ 160 (210)
|+|+|+++...-..... |. . ....++|+||++||+|++... .+.+.. +...++ ++++++||+
T Consensus 365 ILVVdAddGv~~qT~e~-i~-~----a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA-IN-H----AKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEECCCCCCHhHHHH-HH-H----HHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 99999998543222222 21 1 224568999999999996432 111111 122233 679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVLK 175 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (210)
+|.|++++|++|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998753
No 190
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.3e-21 Score=132.75 Aligned_cols=168 Identities=32% Similarity=0.560 Sum_probs=142.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.-.++++++|+.|.||||++++++.+.|...++ +.+.......+.-+...+++..|||.|++.+..+...++-...+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 567999999999999999999999999988776 9998888777766666799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
++||+....++.++.. |...+.+. ..++|+|++|||.|..... .......+....++.++++||+.+.|.+..|-
T Consensus 88 imFdVtsr~t~~n~~r-whrd~~rv--~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPR-WHRDLVRV--RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred EEeeeeehhhhhcchH-HHHHHHHH--hcCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchH
Confidence 9999999999999988 55555443 4569999999999985443 22233455566788899999999999999999
Q ss_pred HHHHHHHcCCCccc
Q 028353 171 ELVLKILDTPSLLA 184 (210)
Q Consensus 171 ~l~~~~~~~~~~~~ 184 (210)
|+.+++...+.+.-
T Consensus 163 ~LarKl~G~p~Lef 176 (216)
T KOG0096|consen 163 WLARKLTGDPSLEF 176 (216)
T ss_pred HHhhhhcCCCCeEE
Confidence 99999998887753
No 191
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=9.8e-21 Score=137.52 Aligned_cols=158 Identities=21% Similarity=0.200 Sum_probs=107.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------------CCceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------------PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~ 73 (210)
..++|+++|+.++|||||+.+|......... ...+.+.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999844321100 011222222222332 556789999999999
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHH-HHHHHh-
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGI-NFAREY- 150 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~-~~~~~~- 150 (210)
.+.......+..+|++|+|+|+.+........ .+..+. ..++|++||+||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccccccc--cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 88887778899999999999999875543332 223332 356789999999999722111 111122 232222
Q ss_pred -----CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 151 -----GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 151 -----~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
.++++++||.+|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998875
No 192
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=6.2e-20 Score=156.64 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=116.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhc-
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----------TSSY- 82 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~- 82 (210)
.++|+++|+||||||||+|+|++... .....++.|+......+......+.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 47899999999999999999997764 34456777777777667777788999999998665431 1122
Q ss_pred -ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 83 -YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
...+|++++|+|+++.+.... |...+. ..++|+++++||+|+.+.+.+. .+.+.+.+..+++++++|+++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~----l~~ql~----e~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLY----LTLQLL----ELGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred hccCCCEEEEEecCCcchhhHH----HHHHHH----HcCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence 247899999999998654322 223333 2468999999999986554443 446777888999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
+.|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988765
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=2.2e-20 Score=159.63 Aligned_cols=161 Identities=20% Similarity=0.181 Sum_probs=109.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCccc----------cccc-h
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQER----------FRTL-T 79 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~ 79 (210)
..++|+++|.+|||||||+++|++..........+++ .....+.+++. .+.+|||||... +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988753333323333 33333445554 466999999532 1111 1
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HH----hCCeE
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-RE----YGCLF 154 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~ 154 (210)
...++.+|++++|+|+++..+...... + ..+. ..++|+++|+||+|+.+... .+...... .. ...++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCE
Confidence 234688999999999999988776643 3 2232 24689999999999964322 11111111 11 13467
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028353 155 IECSAKTRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
+++||++|.|++++|+.+.+.+.+....+
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~~~~~i 627 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALESWDQRI 627 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999887655443
No 194
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.3e-21 Score=131.40 Aligned_cols=164 Identities=27% Similarity=0.376 Sum_probs=123.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCC---C-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN---F-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
......+.|+|+|..++|||||+..+.... + ..-.++.+.......+ ....+.+||.+|++..+++|.
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~ 87 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWK 87 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHH
Confidence 344566889999999999999998775221 1 1111244433333322 356799999999999999999
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH------HhCCeE
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR------EYGCLF 154 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~ 154 (210)
.+|..++++|+++|+++++.|+.....+...+.. -.-.++|+++.+||.|+.+. ...+++...+. +...++
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~ 164 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPF 164 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCcc
Confidence 9999999999999999999999887755554443 34568999999999998644 33333333332 224569
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 155 IECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.++||.+|+||++...|+...+.++
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999777
No 195
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=4.7e-20 Score=153.96 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=103.4
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE--EEEECCeEEEEEEEeCCCccccccc------hhhcc--cCccEEE
Q 028353 21 GDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK--YVDVGGKKLKLAIWDTAGQERFRTL------TSSYY--RGAQGII 90 (210)
Q Consensus 21 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i 90 (210)
|++|||||||+|++++... ...+.++.+.... .+..++ ..+++|||||...+... ...++ ..+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8999999999999998765 2333444444433 344444 45799999998776543 23332 4789999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|+|+++.+.. .. +...+. ..++|+++|+||+|+.+...+. .+.+.+.+..+++++++||++|.|++++++
T Consensus 78 ~VvDat~ler~---l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 78 NVVDASNLERN---LY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred EEecCCcchhh---HH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 99999875432 12 222222 2468999999999986544443 346777888899999999999999999999
Q ss_pred HHHHHH
Q 028353 171 ELVLKI 176 (210)
Q Consensus 171 ~l~~~~ 176 (210)
++.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 196
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=2.6e-20 Score=146.40 Aligned_cols=152 Identities=21% Similarity=0.142 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhcccC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---------TLTSSYYRG 85 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~ 85 (210)
..|+++|.||||||||+|||++...+.+..++|.|..............+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999998888888888877766666666779999999965322 234456789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCC
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 164 (210)
+|+++||+|....-+-.+-. ....+. ..++|+++|+||+|-.. .+.....+-.+|+ .++.+||.+|.|
T Consensus 84 ADvilfvVD~~~Git~~D~~--ia~~Lr----~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 84 ADVILFVVDGREGITPADEE--IAKILR----RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHH--HHHHHH----hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 99999999998865433221 222232 34689999999999742 2222333445665 499999999999
Q ss_pred HHHHHHHHHHHHH
Q 028353 165 VQQCFEELVLKIL 177 (210)
Q Consensus 165 i~~~~~~l~~~~~ 177 (210)
+.++++.++..+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999984
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=6.9e-20 Score=148.58 Aligned_cols=155 Identities=18% Similarity=0.092 Sum_probs=104.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|++++|||||+++|+...-. ......+.+.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45699999999999999999999843211 001145556666666666677
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce----
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---- 137 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---- 137 (210)
+.+.+|||||++.+.......+..+|++++|+|+++...+......+...... ....|+++++||+|+.....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCCCeEEEEEEccccccccHHHHH
Confidence 89999999999887665556678899999999998732221111112222222 11246899999999964221
Q ss_pred ecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHH
Q 028353 138 VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 138 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 169 (210)
...+++..++...+ ++++++||++|.|+++..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12234555555554 469999999999998754
No 198
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=3.7e-22 Score=138.09 Aligned_cols=189 Identities=35% Similarity=0.538 Sum_probs=149.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.+..++++|+|+-|+|||++++++....|+..+. +++..+.......+. ..+++.|||..|++.+..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 4678999999999999999999999888877666 888777655444433 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhh---hccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCe-EEEEccCCCC
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDL---YSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCL-FIECSAKTRV 163 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~ 163 (210)
..+|||.++..+|+.... |...+.. .++..++|+|+.+||+|+...... ......++.+++|+. .+++|+|.+.
T Consensus 102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 999999999999999988 8877753 244567899999999998544333 246677888888886 9999999999
Q ss_pred CHHHHHHHHHHHHHcCCCccccc-ccCcccccccCCCC
Q 028353 164 NVQQCFEELVLKILDTPSLLAEG-SKGLKKNIFKQKPP 200 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 200 (210)
+++|+-..+++.++.+.....+. ......+-.....+
T Consensus 181 ni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~ 218 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQP 218 (229)
T ss_pred ChhHHHHHHHHHHHhhccCCcccccccccccCccccCc
Confidence 99999999999998887444433 33344433333333
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1.5e-19 Score=146.64 Aligned_cols=156 Identities=21% Similarity=0.117 Sum_probs=105.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC----------------------------CCCCceeeeEEEEEEECCe
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE----------------------------LSPTIGVDFKVKYVDVGGK 60 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 60 (210)
....++|+++|+.++|||||+.+|+.. .... .....+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 345699999999999999999999852 1110 0012344444445556666
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHH-HHHHHhhhccCCCCcEEEEEeCCCCCCCce--
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDV-WAKEIDLYSTNQDCIKLLVGNKVDKESERV-- 137 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 137 (210)
.+.+.+||+||++.+.......+..+|++++|+|+++.+++...... +...... ....|++|++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence 78899999999988776666667899999999999988543211110 1112221 12357899999999964221
Q ss_pred --ecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHH
Q 028353 138 --VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 138 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 169 (210)
...+++..++...+ ++++++||+++.|+.+.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12345566666555 579999999999998744
No 200
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=1.7e-19 Score=141.80 Aligned_cols=165 Identities=22% Similarity=0.126 Sum_probs=123.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccc--chhh
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRT--LTSS 81 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~--~~~~ 81 (210)
..+||+|+|.|++|||||+|++++.+-...++..|+|.......+......+.++||+|... ..+ -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 67999999999999999999999999888888888888888777766666788889999322 111 1233
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCeEEE
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIE 156 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (210)
.+..+|++++|+|++.+.+.+... .... ..+.+.++++|+||+|+.+......++.+..... ..++++.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~--ia~~----i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLR--IAGL----IEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHH--HHHH----HHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 567899999999999988766553 2223 3357789999999999866533333333222222 2467999
Q ss_pred EccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028353 157 CSAKTRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
+||+++.++..+|+.+.+........+
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhcccc
Confidence 999999999999999988776555443
No 201
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=141.84 Aligned_cols=156 Identities=21% Similarity=0.166 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYY 83 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~ 83 (210)
..-+|++++|.||+|||||+|.|++.+-..++..+|+|.......++-..+.+.++||+|..+.... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999888888778889999999996654432 33457
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
..+|.+++|+|++.+.+-.....++ ....+.|+++|.||.|+......... ....+.+++.+|++++.
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGE 362 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCcc
Confidence 8899999999999974433333212 23567899999999999755442211 11224468999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028353 164 NVQQCFEELVLKILDT 179 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (210)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999888666
No 202
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=2.2e-19 Score=122.01 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc----cccccchhhcccCccEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----ERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i~ 91 (210)
||+++|+.|||||||+++|.+... .+..|....+. =.++||||. ..+..-.......+|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 899999999999999999998665 33334443332 123699993 2333333344568999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 170 (210)
|.|++++.+...- .+. ..-+.|+|-|+||+|++. ...+.+.++++....|+. +|++|+.+++|++++.+
T Consensus 70 l~dat~~~~~~pP------~fa---~~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 70 LQDATEPRSVFPP------GFA---SMFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EecCCCCCccCCc------hhh---cccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999997654222 111 123579999999999963 344666788888888886 99999999999999998
Q ss_pred HHH
Q 028353 171 ELV 173 (210)
Q Consensus 171 ~l~ 173 (210)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=1.2e-19 Score=133.81 Aligned_cols=148 Identities=22% Similarity=0.179 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------------------CCceeeeEEEEEEECCeEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------------------PTIGVDFKVKYVDVGGKKLKLA 65 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 65 (210)
||+++|++++|||||+++|+...-.... ...+.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999754321110 0133344433344444566889
Q ss_pred EEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee----cHH
Q 028353 66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV----TKK 141 (210)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 141 (210)
+|||||+..+...+...++.+|++++|+|++++..-... . ....+.. ....++|+|+||+|+...... ...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~-~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-R-HSYILSL---LGIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-H-HHHHHHH---cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 999999988766666678899999999999876432222 1 1222222 112457889999998643221 123
Q ss_pred HHHHHHHHhCC---eEEEEccCCCCCHHHH
Q 028353 142 EGINFAREYGC---LFIECSAKTRVNVQQC 168 (210)
Q Consensus 142 ~~~~~~~~~~~---~~~~~Sa~~~~~i~~~ 168 (210)
+...+....+. +++++||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 34455555553 4899999999998753
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=2.9e-19 Score=143.84 Aligned_cols=162 Identities=17% Similarity=0.135 Sum_probs=105.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE--------------------EEEECC------eEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK--------------------YVDVGG------KKLK 63 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~~ 63 (210)
...++|+++|++++|||||+++|.+........ ..+.+...- ....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999997542211101 111111100 000011 1467
Q ss_pred EEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHH
Q 028353 64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKK 141 (210)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 141 (210)
+++||+||++.+...+...+..+|++++|+|++++........ .+..+.. ....|+++++||+|+...... ..+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHH
Confidence 8999999999988888788888999999999997531122222 2222222 112468999999999654321 223
Q ss_pred HHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 142 EGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 142 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
++..+.... +++++++||+++.|+++++++|...+.
T Consensus 158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 344444432 578999999999999999999988664
No 205
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=7.7e-19 Score=131.31 Aligned_cols=151 Identities=24% Similarity=0.173 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccCcc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRGAQ 87 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 87 (210)
+|+++|++|+|||||+++|++.... ..++....+...-.+.+ ....+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999977532 22221111122222223 34678999999964332 12345688999
Q ss_pred EEEEEEECCCccc-HHHHHHHHHHH-----------------------------------------Hhhh----------
Q 028353 88 GIIMVYDVTRRDT-FTNLSDVWAKE-----------------------------------------IDLY---------- 115 (210)
Q Consensus 88 ~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~~---------- 115 (210)
++++|+|++++.. ...+.. .+.. +..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987652 222222 1110 1110
Q ss_pred -------------ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 116 -------------STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 116 -------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
.+...+|+++|+||+|+.. .++...++. ..+++++||+++.|++++|+.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1123469999999999853 333344433 24589999999999999999998865
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.4e-18 Score=144.70 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=116.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc--CCCCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
...+|+++|+.++|||||+++|+. +.+... ..+.+.++......+.+..+.+++|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 333221 12456666666667777789999999999999999
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE------- 149 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~------- 149 (210)
.+..+++.+|++++|+|+.+......... |.. .. ..++|.++++||+|++..+. ...+++..++..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~-l~~-a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFV-TKK-AF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHH-HHH-HH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 99999999999999999988643332221 322 22 24688999999999865432 122333343322
Q ss_pred hCCeEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028353 150 YGCLFIECSAKTRV----------NVQQCFEELVLKILDT 179 (210)
Q Consensus 150 ~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~ 179 (210)
..+|++.+||++|. ++..+++.+++.+...
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 34779999999998 5888888888877433
No 207
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=2.7e-18 Score=119.31 Aligned_cols=159 Identities=22% Similarity=0.249 Sum_probs=118.7
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----CC--------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----SP--------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
+........||+|.|+.++||||+++.+........ .. |...++.... .+.+..+++++||||+
T Consensus 3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~---~~~~~~v~LfgtPGq~ 79 (187)
T COG2229 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE---LDEDTGVHLFGTPGQE 79 (187)
T ss_pred cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE---EcCcceEEEecCCCcH
Confidence 344566789999999999999999999986653111 00 1111221111 1133678999999999
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--C
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY--G 151 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~ 151 (210)
.+.-+|....+++.++|+++|.+.+..+ .... ...++.. ...+|++|+.||+|+... ...+.+++..... .
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~---~~~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~ 152 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTS---RNPIPVVVAINKQDLFDA--LPPEKIREALKLELLS 152 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhh---ccCCCEEEEeeccccCCC--CCHHHHHHHHHhccCC
Confidence 9999999999999999999999999988 3333 4444443 122999999999999755 5556666666655 7
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHH
Q 028353 152 CLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
+++++.+|.+++++.+.++.+...
T Consensus 153 ~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 153 VPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CceeeeecccchhHHHHHHHHHhh
Confidence 899999999999999999888776
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=2.1e-18 Score=125.46 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
.++|+++|++++|||||+++|++... .......+.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999985310 011113455555555556666778899999999888777
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh----
Q 028353 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY---- 150 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~---- 150 (210)
....+..+|++++|+|+.....-.. .. +...+. ..++| +|+++||+|+...... ..+++..+....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~-~~~~~~----~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-RE-HLLLAR----QVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 7778889999999999987543222 22 222333 23466 7789999998533221 123445554443
Q ss_pred -CCeEEEEccCCCCCHH
Q 028353 151 -GCLFIECSAKTRVNVQ 166 (210)
Q Consensus 151 -~~~~~~~Sa~~~~~i~ 166 (210)
+++++++||++|.|+.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 3679999999999853
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=8.4e-19 Score=141.10 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=103.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE----EEE----------------EC--C----eEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK----YVD----------------VG--G----KKL 62 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~----~~~----------------~~--~----~~~ 62 (210)
....++|+++|+.++|||||+.+|.+........ ..+.+.... .+. .+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 4456999999999999999999996532111110 122222110 000 00 0 136
Q ss_pred EEEEEeCCCccccccchhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--c
Q 028353 63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--T 139 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 139 (210)
.+++||+||++.+..........+|++++|+|++++. ....... + ..+.. ....|+++|+||+|+.+.... .
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l-~~l~~---~~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-L-MALDI---IGIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-H-HHHHH---cCCCcEEEEEEeeccccchhHHHH
Confidence 7899999999887766666667789999999999754 2222211 2 22221 112468999999999654322 1
Q ss_pred HHHHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 140 KKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
.+++..++... +.+++++||+++.|+++++++|...+.
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 23344444332 578999999999999999999988764
No 210
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=6.7e-19 Score=146.22 Aligned_cols=156 Identities=18% Similarity=0.121 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE------------ECCeEEEEEEEeCCCcccccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD------------VGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~l~D~~g~~~~~~ 77 (210)
--|+++|++++|||||+++|.+..+....+ +.+..+...... +......+.+|||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 458999999999999999999876643322 112211111000 000112388999999999999
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee------------cHHHH--
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------TKKEG-- 143 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~~-- 143 (210)
++...++.+|++++|+|+++......... ...+. ..++|+++++||+|+...... ..+.+
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~--i~~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEA--LNILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHH--HHHHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 88888999999999999998433222211 11222 246899999999998532100 00000
Q ss_pred ----------HHHHH------------Hh--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 144 ----------INFAR------------EY--GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 144 ----------~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
.++.. .+ .++++++||++|+|+++++.++....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 01110 11 35799999999999999999887543
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=9.1e-19 Score=145.97 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=113.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCCCC-------------CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS--DNFEELS-------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
+|+|+|+.++|||||+++|+. +.+.... ...+.++......+.+..+.+++|||||+..+...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999985 2222211 1334555555555566678999999999999988888
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHH-------HhCC
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAR-------EYGC 152 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~ 152 (210)
..++.+|++++|+|+.+.. ...... |+..+. ..++|+++|+||+|+...+.. ..+++..++. ...+
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~----~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHH----HCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 8999999999999998753 333333 433333 246899999999998654321 1233344432 2356
Q ss_pred eEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028353 153 LFIECSAKTRV----------NVQQCFEELVLKILDT 179 (210)
Q Consensus 153 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~ 179 (210)
+++++||++|. |+..+|+.+++.+...
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 89999999995 7999999999887544
No 212
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=1.6e-18 Score=129.28 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=124.7
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--------- 75 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------- 75 (210)
+..+++..+.++|+++|.||+|||||.|.+.+.+....+.-..+|.......+.....++.|+||||.-.-
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH
Confidence 34456678899999999999999999999999998888876666666666666667788999999992111
Q ss_pred cc---chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH----------
Q 028353 76 RT---LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE---------- 142 (210)
Q Consensus 76 ~~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---------- 142 (210)
.. .....+..+|++++|+|+++....-.-. .+..+..+ ..+|-++|+||.|......+....
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA 217 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence 11 1223466899999999999643222111 23333332 457899999999975432211110
Q ss_pred --HHHHHHHh-------------CC----eEEEEccCCCCCHHHHHHHHHHHHHcCCCccccccc
Q 028353 143 --GINFAREY-------------GC----LFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK 188 (210)
Q Consensus 143 --~~~~~~~~-------------~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 188 (210)
..++..+. |. .+|.+||++|+||+++-++|+......+..+.++.-
T Consensus 218 ~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~ 282 (379)
T KOG1423|consen 218 KLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIV 282 (379)
T ss_pred hhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccc
Confidence 11111111 12 289999999999999999999999998888876643
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=1.3e-18 Score=130.36 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--------------CCC---CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFE--------------ELS---PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
+|+++|++|+|||||+++|+...-. +.. ...+.++......+.....++++|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753211 101 12233333344445556788999999999998888
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
+...++.+|++++|+|+++..... ... +...+. ..++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~-~~~~~~----~~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRI-LWRLLR----KLNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHH-HHHHHH----HcCCCEEEEEECcccc
Confidence 888899999999999999875432 233 333333 2468999999999985
No 214
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=3.4e-18 Score=121.57 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc----------ccchhhccc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----------RTLTSSYYR 84 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~~ 84 (210)
.|+++|++|+|||||++.+.++.+ ....++.+.+.....+..++ .+.+||+||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999995544 33334555555444444433 7899999995332 222223333
Q ss_pred ---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH--HhCCeEEEE
Q 028353 85 ---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR--EYGCLFIEC 157 (210)
Q Consensus 85 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 157 (210)
..+++++++|..+..+..... ....+.. .+.|+++++||+|+...... .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 467899999988764322211 2222322 24799999999998533221 1122222222 234579999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028353 158 SAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~ 175 (210)
|++++.++++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999865
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=1.1e-18 Score=129.60 Aligned_cols=147 Identities=20% Similarity=0.146 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC---------------------------CCCCC---CCceeeeEEEEEEECCeEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN---------------------------FEELS---PTIGVDFKVKYVDVGGKKLKLA 65 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~---------------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 65 (210)
+|+++|++++|||||+.+|+... +.... ...+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996321 00111 1334445555555555678899
Q ss_pred EEeCCCccccccchhhcccCccEEEEEEECCCccc------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--e
Q 028353 66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--V 137 (210)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~ 137 (210)
+||+||+..+...+...+..+|++++|+|+++... .......+. .... ....|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART---LGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH---cCCCeEEEEEEccccccccccH
Confidence 99999998777666667788999999999998521 111222121 2221 1236889999999996321 1
Q ss_pred e----cHHHHHHHHHHhC-----CeEEEEccCCCCCHH
Q 028353 138 V----TKKEGINFAREYG-----CLFIECSAKTRVNVQ 166 (210)
Q Consensus 138 ~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 166 (210)
. ..+++..+....+ ++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 1122223333433 569999999999987
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=5.6e-18 Score=141.23 Aligned_cols=156 Identities=21% Similarity=0.183 Sum_probs=100.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD--VGGKK-----L-----KLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~g~~~ 74 (210)
.+...|+++|++++|||||+++|.+.......+ +.+.++...... ..+.. . .+++|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 345579999999999999999998665432222 112111111000 00111 1 268999999999
Q ss_pred cccchhhcccCccEEEEEEECCC---cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee------------c
Q 028353 75 FRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------T 139 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------~ 139 (210)
+..++...++.+|++++|+|+++ +.++..+. .+. ..++|+++++||+|+...... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 99888888889999999999998 44444332 122 246899999999998522110 0
Q ss_pred HH-----------HHHHHHHHh---------------CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 140 KK-----------EGINFAREY---------------GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 140 ~~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
.. ++....... .++++++||++|.|+++++..+...+
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 011111111 35699999999999999998876533
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=6.4e-18 Score=141.55 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=102.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC---CCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN---FEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
-|+++|++++|||||+++|++.. +.+.. ..+.+.......+ ......+.+||+||++.+.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~-~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEK-KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcc-cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 48899999999999999999643 22221 1233332221112 1122358999999999887777777889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHhC---CeEEEEccCCCCCH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREYG---CLFIECSAKTRVNV 165 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i 165 (210)
|+|+++...-.. .+ .+..+.. .++| ++||+||+|+.+.... ..+++..+....+ .+++++||++|.|+
T Consensus 81 VVda~eg~~~qT-~e-hl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 81 VVACDDGVMAQT-RE-HLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred EEECCCCCcHHH-HH-HHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 999987532221 11 2222222 2345 5799999999654322 2234455554444 67999999999999
Q ss_pred HHHHHHHHHHHH
Q 028353 166 QQCFEELVLKIL 177 (210)
Q Consensus 166 ~~~~~~l~~~~~ 177 (210)
+++++.|.+...
T Consensus 155 ~~L~~~L~~~~~ 166 (614)
T PRK10512 155 DALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHhhc
Confidence 999999987553
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.1e-17 Score=134.17 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=108.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC------------C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|++... . ......+.+.......+......+.++|+||++.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34579999999999999999999985311 0 11114455555555566566678899999999888
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHHHhC
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVT---KKEGINFAREYG 151 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 151 (210)
.......+..+|++++|+|+.....-.. .. ++..+. ..++| +|+++||+|+.+..... .+++..+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~-~~~~~~----~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLAR----QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 7766666788999999999987533222 22 223333 23577 67889999986433221 234555555444
Q ss_pred -----CeEEEEccCCCC--------CHHHHHHHHHHHHH
Q 028353 152 -----CLFIECSAKTRV--------NVQQCFEELVLKIL 177 (210)
Q Consensus 152 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~ 177 (210)
++++++||+++. ++.++++.+.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 56777777666553
No 219
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=1.1e-18 Score=139.93 Aligned_cols=171 Identities=26% Similarity=0.311 Sum_probs=128.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
....+||+++|+.|+||||||.+|...+|.+.-|.....+. ....+.-..+...++|++..+.-......-++++|++.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 45679999999999999999999999998766553222221 12333334566889999876665666677899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhC-C-eEEEEccCCCCCHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKE-GINFAREYG-C-LFIECSAKTRVNVQ 166 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~ 166 (210)
++|+.+++.+++.+..+|+..++.... ..++|+|+||||.|....+....+. ..-+...+. + ..++|||++..++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 999999999999999999999987432 2579999999999986554442222 222222222 2 37999999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 028353 167 QCFEELVLKILDTPSL 182 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~ 182 (210)
++|...-.+++-....
T Consensus 165 e~fYyaqKaVihPt~P 180 (625)
T KOG1707|consen 165 ELFYYAQKAVIHPTSP 180 (625)
T ss_pred hhhhhhhheeeccCcc
Confidence 9999988887665544
No 220
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=4.7e-18 Score=125.80 Aligned_cols=112 Identities=23% Similarity=0.281 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQ 72 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~ 72 (210)
+|+++|++++|||||+.+|+........ ...+.++......+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865433210 01122222222221 355789999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
..+.......+..+|++++|+|+.+..+.... . +..... ..+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence 98888788888999999999999987765432 2 333332 2348999999999975
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.9e-17 Score=131.12 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=106.7
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC-------CC-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD-------NF-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~-------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|++. .+ . ......+.+.......+......+.|+||||+..+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 356699999999999999999999852 11 0 01114455555555556556678899999999887
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHhC
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREYG 151 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 151 (210)
.......+..+|++++|+|+.+...-.. .. ++..+. ..++|.+ +++||+|+...... ..+++..+....+
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 7766677788999999999987543222 22 222232 3457755 57999999643221 1224455555443
Q ss_pred -----CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 028353 152 -----CLFIECSAKTRV----------NVQQCFEELVLKI 176 (210)
Q Consensus 152 -----~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 176 (210)
++++++||.++. ++.++++.|...+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 5666666666554
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.4e-17 Score=132.43 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=99.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCC-------C-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-------F-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~-------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|+.++|||||+++|++.. + . ......+.+.....+.++.....+.+|||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4567999999999999999999997320 0 0 00113455555555666666778999999999888
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCceec---HHHHHHHHHHhC
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVT---KKEGINFAREYG 151 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 151 (210)
.......+..+|++++|+|+.+....... . ++..+. ..++|.+ +++||+|+.+..... .+++..++...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e-~l~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTR-E-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHH----HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 76666666788999999999875333222 2 222232 2356655 689999986543221 234556666554
Q ss_pred -----CeEEEEccCCCC
Q 028353 152 -----CLFIECSAKTRV 163 (210)
Q Consensus 152 -----~~~~~~Sa~~~~ 163 (210)
++++++||.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.3e-17 Score=136.78 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=118.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--cC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--RG 85 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~ 85 (210)
..+|+++|.||+|||||.|+|++... .....+|.|+...+..+......++++|+||--.+.. ..+.++ .+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 45699999999999999999997653 4555788888888877776777799999999443332 223333 35
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (210)
.|++|-|+|+++-+.--.+ .++.+ +-+.|++++.|+.|..+.+-+... ...+.+..|+|+++++|++|.|+
T Consensus 82 ~D~ivnVvDAtnLeRnLyl---tlQLl-----E~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL---TLQLL-----ELGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCEEEEEcccchHHHHHHH---HHHHH-----HcCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCCEEEEEeecCCCH
Confidence 7999999999987654433 22222 356899999999998655444333 57778889999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028353 166 QQCFEELVLKILDTP 180 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~ 180 (210)
+++...+.+......
T Consensus 153 ~~l~~~i~~~~~~~~ 167 (653)
T COG0370 153 EELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHhccccc
Confidence 999999987665444
No 224
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=8.4e-17 Score=114.28 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=112.8
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc----------ccccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------ERFRT 77 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~ 77 (210)
-+.+...-|+|+|.+|||||||||+|++.+ ....+.++|.|.....+.+++. +.++|.||- +.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 345577889999999999999999999966 5777789998888777777665 788899992 22222
Q ss_pred chhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh----
Q 028353 78 LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY---- 150 (210)
Q Consensus 78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---- 150 (210)
....++. +-.++++++|+..+....+.. .+.++. ..++|++|++||+|.......... ........
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~e--m~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~-l~~v~~~l~~~~ 168 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDRE--MIEFLL----ELGIPVIVVLTKADKLKKSERNKQ-LNKVAEELKKPP 168 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHH--HHHHHH----HcCCCeEEEEEccccCChhHHHHH-HHHHHHHhcCCC
Confidence 3333333 357889999999876554332 344444 467899999999998654333211 12222222
Q ss_pred CCe--EEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 151 GCL--FIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 151 ~~~--~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
... ++..|+..+.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222 7889999999999999999887743
No 225
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=1.9e-17 Score=122.43 Aligned_cols=173 Identities=19% Similarity=0.212 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----chhhcccCccEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRT-----LTSSYYRGAQGI 89 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~~ 89 (210)
||+++|+.+|||||+.+.+..+..+......+.|.......+ ......+.+||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999997766554444444443333333 23346899999999865443 356678999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCce--e----cHHHHHHHHHHhC---CeEEEEcc
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESERV--V----TKKEGINFAREYG---CLFIECSA 159 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~--~----~~~~~~~~~~~~~---~~~~~~Sa 159 (210)
|||+|+.+.+..+.+.. +...+.. ....++..+.|.++|+|+..... . ..+.+...+...+ +.++.+|.
T Consensus 81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999996665555544 4444432 23367889999999999853321 1 1223444445555 67888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcccccccCc
Q 028353 160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGL 190 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (210)
-+ ..+-+.|..+++.+..+.+.++...+.+
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~~ 189 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLENLLNNF 189 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCCCCCHH
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 88 5899999999999988777776655543
No 226
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.7e-18 Score=115.72 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=122.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.+.-|++|+|-.|+|||||++.|......+..||...+.....+ ....++.+|++|+......|..++..+|++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 35568999999999999999999998888888877776665544 56778899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHHHHh--------C---CeEEE
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFAREY--------G---CLFIE 156 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~--------~---~~~~~ 156 (210)
.+|+.|.+.|...+..+...+.. ..-..+|+++.+||+|.+.+...+.-... .+.... + ..++-
T Consensus 94 lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 99999999999888755544443 22467999999999999766432221111 111111 1 13788
Q ss_pred EccCCCCCHHHHHHHHHHH
Q 028353 157 CSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~ 175 (210)
||...+.+.-+.|.|+...
T Consensus 173 csi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEccCccceeeeehhhh
Confidence 9998888888888887654
No 227
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=122.24 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=107.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEE-EEEEeCCCcccccc-------chhhcccC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK-LAIWDTAGQERFRT-------LTSSYYRG 85 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~D~~g~~~~~~-------~~~~~~~~ 85 (210)
...|.++|.|++|||||++.+...+. .......+|.......+...++. +.+-|+||.-+-.. .....+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 45688999999999999999997765 22222233332222233333333 88889999433222 22334678
Q ss_pred ccEEEEEEECCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccC
Q 028353 86 AQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAK 160 (210)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 160 (210)
++.++||+|++.. +.++.+.. +..+++.|.. ..+.|.++|+||+|+++. ......+++....-+ ++++||+
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAK 350 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeec
Confidence 9999999999998 88888877 5566655533 346899999999998522 222245566666554 9999999
Q ss_pred CCCCHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVL 174 (210)
Q Consensus 161 ~~~~i~~~~~~l~~ 174 (210)
.++++.++++.|.+
T Consensus 351 ~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 351 SGEGLEELLNGLRE 364 (366)
T ss_pred cccchHHHHHHHhh
Confidence 99999999887765
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=9.9e-17 Score=129.32 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=101.4
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|++... .......+.+.......+......+.++|+||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45569999999999999999999986411 011113455555544555556677889999999888
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG 151 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 151 (210)
.......+..+|++++|+|+.....-. ... ++..+. ..++| +|+++||+|+...... ..+++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TKE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHH-HHH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 777777788999999999998754322 222 222232 34577 7789999999653322 1234455555443
Q ss_pred -----CeEEEEccCCCCCH
Q 028353 152 -----CLFIECSAKTRVNV 165 (210)
Q Consensus 152 -----~~~~~~Sa~~~~~i 165 (210)
++++++||.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 67999999998743
No 229
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.74 E-value=1.6e-16 Score=118.06 Aligned_cols=152 Identities=15% Similarity=0.079 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------------ceeeeE----EEE--------------------EEEC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT-------------IGVDFK----VKY--------------------VDVG 58 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~-------------~~~~~~----~~~--------------------~~~~ 58 (210)
||+++|+.++|||||+.+|..+.+...... .|.+.. ... -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987655321110 011100 000 0011
Q ss_pred CeEEEEEEEeCCCccccccchhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 59 GKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
.....+.++|+||++.+.......+. .+|++++|+|+.....-... . ++..+. ..++|+++|+||+|+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~-~-~l~~l~----~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK-E-HLGLAL----ALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH-H-HHHHHH----HcCCCEEEEEECccccCHH
Confidence 22457889999999887665444443 68999999999876542222 2 333333 3457999999999985432
Q ss_pred eec--HHHHHHHHH--------------------------HhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 137 VVT--KKEGINFAR--------------------------EYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 137 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
... .+++..+.. ...+|++.+||.+|.|+++++..|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 221 122222221 1124799999999999999887664
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=1.1e-16 Score=121.82 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------C---CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS------------------P---TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
-+|+++|++|+|||||+++|+...-.... + ..+.++......++...+.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999743211000 0 11233344445566677899999999998
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
.+.......++.+|++|+|+|+++..... ... +..... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~----~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCR----LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence 88776777789999999999998764322 222 222222 346899999999998654
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=1.5e-16 Score=116.38 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=98.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCce---eeeEEEEEEECCeEEEEEEEeCCCccccccc-----hhhccc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIG---VDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----TSSYYR 84 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~~~ 84 (210)
++||+++|++|+|||||+|.|++..... ...+.+ .+.....+... ....+.+||+||....... ....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 4789999999999999999999865432 112222 11111111111 1236899999996532221 122367
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-----------ecHHHHH----HHHHH
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VTKKEGI----NFARE 149 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~----~~~~~ 149 (210)
.+|+++++.+. .+......|+..+... +.|+++|+||+|+..... ...++.+ .....
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 78998888432 2344444466666542 578999999999842211 1111112 22222
Q ss_pred hCC---eEEEEccC--CCCCHHHHHHHHHHHHHcCCCc
Q 028353 150 YGC---LFIECSAK--TRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 150 ~~~---~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+. ++|.+|+. .+.|+..+.+.++..+.+.+..
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 232 48999998 5789999999999999765543
No 232
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=1.2e-16 Score=130.68 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=97.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------C-------------------CceeeeEEEEEEEC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------------P-------------------TIGVDFKVKYVDVG 58 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-------------~-------------------~~~~~~~~~~~~~~ 58 (210)
....++|+++|++++|||||+.+|+...-.... . .-+.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356799999999999999999999754211100 0 11223333333445
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028353 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (210)
.....+.||||||+..+.......+..+|++++|+|+.....-..... +. ..... ...|+++++||+|+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~-l~~~l---g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SF-IATLL---GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HH-HHHHh---CCCceEEEEEeeccccchhH
Confidence 556789999999998876655556789999999999987542221111 11 11111 12478899999998643221
Q ss_pred cHH----HHHHHHHHh----CCeEEEEccCCCCCHHHH
Q 028353 139 TKK----EGINFAREY----GCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 139 ~~~----~~~~~~~~~----~~~~~~~Sa~~~~~i~~~ 168 (210)
..+ +...+.... ..+++++||++|.|+.+.
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 122 222223333 367999999999999864
No 233
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=1.9e-16 Score=127.49 Aligned_cols=148 Identities=23% Similarity=0.216 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------------------------CCceeeeEEEEEEECCeEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS--------------------------------PTIGVDFKVKYVDVGGKKL 62 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 62 (210)
+||+++|++++|||||+.+|+...-.... ..-+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999643211000 0122233333344445566
Q ss_pred EEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---
Q 028353 63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--- 139 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--- 139 (210)
.+.++||||++.+.......+..+|++++|+|+.....-+.... |. .+... ...++++++||+|+.......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~---~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLL---GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence 89999999998887666677889999999999987643222221 21 22211 123688999999986432211
Q ss_pred -HHHHHHHHHHhC---CeEEEEccCCCCCHHH
Q 028353 140 -KKEGINFAREYG---CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 140 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 167 (210)
.++...+....+ ++++++||++|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122233333333 4699999999999886
No 234
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=1.9e-16 Score=130.54 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=82.6
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhc--CCCC----------------CCC---CCceeeeEEEEEEECCeEEEEEEEe
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFE----------------ELS---PTIGVDFKVKYVDVGGKKLKLAIWD 68 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~--~~~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D 68 (210)
+.....+|+|+|++++|||||.++|+. +... +.. ...+.++......+....+.+++||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 445678999999999999999999973 1110 000 0123333344444555678899999
Q ss_pred CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
|||+..+.......++.+|++|+|+|+++.... .... +.... ...++|+++++||+|+.
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~----~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVC----RLRDTPIFTFINKLDRD 144 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHH----HhcCCCEEEEEECCccc
Confidence 999998887777788999999999999886432 2223 22222 23578999999999974
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.4e-16 Score=125.83 Aligned_cols=166 Identities=18% Similarity=0.198 Sum_probs=122.6
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCCCCceeeeEEEEE---EECCeEEEEEEEeCCCc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELSPTIGVDFKVKYV---DVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~~---~~~~~~~~~~l~D~~g~ 72 (210)
+.++.-|+.|+.+..-|||||..+|+...- -+....-|.|+..... ..++..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 446778999999999999999999973211 0111123444433332 22466699999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH-HHHHHHHHhC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK-EGINFAREYG 151 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~ 151 (210)
..|.......+..|+++++|+|++..-..+.+..+|+. + ..+.-+|.|.||+|++.++....+ ++.+.+....
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-f-----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-F-----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-H-----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999998888877774443 2 345678999999999877554333 2334444445
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 152 CLFIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
.+++.+||++|.|+++++..+++.+....-
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 569999999999999999999999854433
No 236
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=1.1e-15 Score=116.82 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=94.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---- 77 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---- 77 (210)
..++|+++|++|+|||||+++|++..+... ..+...+.....+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876433 12444445555556677889999999999432111
Q ss_pred ----------------------chhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 78 ----------------------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
.....+. .+|+++++++.+.......-.. ++..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHh-----ccCCEEEEEECCCcC
Confidence 0101222 4788888888775221111111 233332 258999999999985
Q ss_pred CCc--eecHHHHHHHHHHhCCeEEEEccCCC
Q 028353 134 SER--VVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (210)
... ....+.+.+.+...+++++.......
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 432 23455677778888999888776433
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.70 E-value=9.1e-16 Score=123.22 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=104.4
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|++... .......+.+.......+......+.++||||+..+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 35679999999999999999999986311 001114455555555555555677899999999887
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHh-
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREY- 150 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~- 150 (210)
.......+..+|++++|+|+.....-. ... ++..+. ..++|.+ +++||+|+...... ...++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~-~~~~~~----~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchH-HHH-HHHHHH----HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 776667788999999999998754322 222 223333 2457875 58999999643221 122344444433
Q ss_pred ----CCeEEEEccCCCC----------CHHHHHHHHHHH
Q 028353 151 ----GCLFIECSAKTRV----------NVQQCFEELVLK 175 (210)
Q Consensus 151 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 175 (210)
.++++++||+++. ++..+++.|...
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3679999999875 345555555543
No 238
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=2.4e-16 Score=120.12 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--C---------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF--E---------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
+|+++|++++|||||+++|+...- . ......+.+.......+......+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211 0 01112344444444444455678999999999888888
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCe-EEE
Q 028353 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCL-FIE 156 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~ 156 (210)
+...++.+|++++|+|+.+...-... . +...+. ..++|+++++||+|+..... ...++++.......++ .++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~-~-~~~~~~----~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTE-T-VWRQAD----RYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence 88889999999999999886533222 2 222222 34689999999999864321 1122222222222222 677
Q ss_pred EccCCC
Q 028353 157 CSAKTR 162 (210)
Q Consensus 157 ~Sa~~~ 162 (210)
+|+..+
T Consensus 155 isa~~~ 160 (270)
T cd01886 155 IGEEDD 160 (270)
T ss_pred cccCCC
Confidence 776633
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=2.2e-16 Score=128.70 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=100.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCC------CC---------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN------FE---------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|++.. .. ......+.+.......++.....+.++|+||++.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4567999999999999999999998521 10 11114455555444455555678899999999988
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh-
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY- 150 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~- 150 (210)
.......+..+|++++|+|+.+...-.. .+ +...+. ..++| +++++||+|+...... ..+++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAK----QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 8777777889999999999997653332 22 333333 23577 7789999999653322 122344554443
Q ss_pred ----CCeEEEEccCCCCC
Q 028353 151 ----GCLFIECSAKTRVN 164 (210)
Q Consensus 151 ----~~~~~~~Sa~~~~~ 164 (210)
.++++++|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46799999998854
No 240
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=6.6e-16 Score=123.67 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=110.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+..=|.++|+..-|||||+..+-......... ....++....+..+- ....+.|+|||||+.|..+...-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999998766543322 333334444444431 3456899999999999999888888899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CeEEEEccCC
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAKT 161 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 161 (210)
+|+|+++.---+.... +. +....++|++|++||+|.++.+ ......-..++| ..++++||++
T Consensus 84 LVVa~dDGv~pQTiEA-----I~-hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 84 LVVAADDGVMPQTIEA-----IN-HAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEccCCcchhHHHH-----HH-HHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 9999998543222221 11 1346789999999999987432 222222222222 3599999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028353 162 RVNVQQCFEELVLKILDT 179 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (210)
|.|+++++..++-.....
T Consensus 155 g~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 155 GEGIDELLELILLLAEVL 172 (509)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999887655433
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=7.8e-16 Score=113.87 Aligned_cols=112 Identities=18% Similarity=0.206 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCC------------C---CCceeeeE--EEEEEEC--------CeEEEEEEEeCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEEL------------S---PTIGVDFK--VKYVDVG--------GKKLKLAIWDTA 70 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~------------~---~~~~~~~~--~~~~~~~--------~~~~~~~l~D~~ 70 (210)
+|+++|+.++|||||+.+|+...-... . ...+.+.. ...+.+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975321100 0 01111211 1122222 447899999999
Q ss_pred CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
|+..+.......++.+|++++|+|+.+......... +.. .. ..++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~-~~----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQ-AL----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHH-HH----HcCCCEEEEEECCCcc
Confidence 999999888889999999999999998876554322 222 21 2357999999999985
No 242
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=5.9e-16 Score=125.64 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=104.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC---------------------------C---CCCCCceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------------------E---ELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|+.++|||||+.+|+...- . ......+.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999998863210 0 001133445555555666777
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccH-------HHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF-------TNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKE 133 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~ 133 (210)
..++++|+||++.|.......+..+|++|+|+|+.+.. | ...+. ...... ..++ ++||++||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~e-h~~~~~----~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTRE-HALLAF----TLGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHH-HHHHHH----HcCCCcEEEEEEcccCC
Confidence 88999999999999988888899999999999998742 2 12222 222222 2455 468899999985
Q ss_pred CCc------eecHHHHHHHHHHhC-----CeEEEEccCCCCCHHH
Q 028353 134 SER------VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 134 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (210)
... ....+++..++...+ ++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 112345666666665 5699999999999854
No 243
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.1e-16 Score=122.36 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC---C--------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP---T--------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
+|+++|++|+|||||+++|+......... . .+.+.......+......+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532111000 0 011122222233334567899999999887777
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeE--EE
Q 028353 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLF--IE 156 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~ 156 (210)
+...++.+|++++|+|+++......... |. .+. ..++|+++++||+|+.... ..+....+....+.++ +.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 8888999999999999998765543322 33 222 3468999999999986542 1222333434455543 44
Q ss_pred EccCCCCCHHHHHHHHHH
Q 028353 157 CSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~ 174 (210)
++..++.++..+.+.+..
T Consensus 153 ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred ecccCCCceeEEEEcccC
Confidence 445666665554444433
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.9e-15 Score=122.66 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=103.7
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC------CCC---------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD------NFE---------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|.+. ... ......+.+.......++.....+.++||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 346699999999999999999999722 100 01113555666666666666778999999999887
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHHHh-
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVT---KKEGINFAREY- 150 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~- 150 (210)
.......+..+|++++|+|+.+...-+. .+ .+..+. ..++| +|+++||+|+.+..... .+++..+....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 7666666678999999999987643222 22 222232 34578 47889999996432211 11223333322
Q ss_pred ----CCeEEEEccC---CCCC-------HHHHHHHHHHHH
Q 028353 151 ----GCLFIECSAK---TRVN-------VQQCFEELVLKI 176 (210)
Q Consensus 151 ----~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~ 176 (210)
.++++++|+. ++.| +.++++.+...+
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 3678888876 4444 667777666654
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=8.4e-16 Score=124.80 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=100.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC--CC----------------------------CCCCCceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FE----------------------------ELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|+.++|||||+.+|+... .. ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999997511 00 001133445555555566677
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc---H---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES 134 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (210)
..++|+|+||+..|.......+..+|++++|+|+..... + ......|. .+. ..++| +||++||+|.+.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~----~~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAF----TLGVKQMIVCINKMDDKT 159 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHH----HcCCCeEEEEEEcccccc
Confidence 889999999999988888888899999999999987531 1 12222122 222 24555 678999999532
Q ss_pred --Ccee----cHHHHHHHHHHh-----CCeEEEEccCCCCCHHH
Q 028353 135 --ERVV----TKKEGINFAREY-----GCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 135 --~~~~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 167 (210)
.... ..+++..++... .++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1111 123344444433 35799999999999864
No 246
>COG2262 HflX GTPases [General function prediction only]
Probab=99.68 E-value=2.1e-15 Score=117.37 Aligned_cols=165 Identities=18% Similarity=0.147 Sum_probs=108.9
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-ccc-chhh-----
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRT-LTSS----- 81 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~-~~~~----- 81 (210)
.......|.++|..|+|||||+|+|++.... ........+.....+.+.+ ...+.+-||.|.-. ... +..+
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 3456689999999999999999999976532 2222222223333344443 34567779999422 121 2222
Q ss_pred -cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 82 -YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 82 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
-...+|.++.|+|++++.....+.. ....+.. ....++|+|+|.||+|+..... . ...+..... ..+.+||+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~e-l~~~~~p~i~v~NKiD~~~~~~-~---~~~~~~~~~-~~v~iSA~ 339 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEA-VEDVLAE-IGADEIPIILVLNKIDLLEDEE-I---LAELERGSP-NPVFISAK 339 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHH-HHHHHHH-cCCCCCCEEEEEecccccCchh-h---hhhhhhcCC-CeEEEEec
Confidence 2457999999999999976666655 4444544 2345599999999999754433 1 111111112 58999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCc
Q 028353 161 TRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
++.|++.++..|.+.+......
T Consensus 340 ~~~gl~~L~~~i~~~l~~~~~~ 361 (411)
T COG2262 340 TGEGLDLLRERIIELLSGLRTE 361 (411)
T ss_pred cCcCHHHHHHHHHHHhhhcccc
Confidence 9999999999999998755443
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=3.7e-16 Score=104.67 Aligned_cols=105 Identities=24% Similarity=0.249 Sum_probs=67.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccc---------ccchhhccc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERF---------RTLTSSYYR 84 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~ 84 (210)
+|+|+|.+|+|||||+|+|++......+...+.+... ..+.+++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986543333322332222 333445544 468999995321 111223348
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
.+|++++|+|++++.. +.... ++..+ . .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence 8999999999877322 22222 33333 1 56899999998
No 248
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=3.1e-15 Score=109.35 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------chhhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-----------LTSSY 82 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~ 82 (210)
++|+++|.+|+|||||+|.+++........ ..+.+..............+.++||||...... .+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876543221 222222222221111345789999999543321 11122
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCcee------cHHHHHHHHHHhCCeEE
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVV------TKKEGINFAREYGCLFI 155 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~ 155 (210)
..+.|++++|+++.+ .+-... . .+..+... ....-.+++++.|+.|......+ .....+.+....+..++
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~-~-~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEE-Q-AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHH-H-HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 467899999999887 332221 1 23333321 11223578899999986443211 11345555666666666
Q ss_pred EEcc-----CCCCCHHHHHHHHHHHHHcC
Q 028353 156 ECSA-----KTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 156 ~~Sa-----~~~~~i~~~~~~l~~~~~~~ 179 (210)
..+. ..+.++.++++.+.+.+.++
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 6654 45678999999999988763
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=6.2e-16 Score=132.35 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=84.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--------------ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+.+...+|+|+|+.++|||||+++|+...-. ...+ ..+.+.......+......+++|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 3456789999999999999999999753210 0000 1222333222334445678999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
..+...+...++.+|++++|+|+++......... |.. +. ..++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~-~~----~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQ-AD----RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----hcCCCEEEEEECCCCCC
Confidence 9888888889999999999999998876654433 432 22 34689999999999853
No 250
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=3.6e-15 Score=112.82 Aligned_cols=157 Identities=21% Similarity=0.186 Sum_probs=104.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----cccccchhh---ccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----ERFRTLTSS---YYR 84 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~~~~~---~~~ 84 (210)
....|+|.|+||||||||++.+++.+. +..+.+.+|-.....+++....+++++||||. ++....-.. .++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 567899999999999999999997765 23333444444444566666778999999992 222221111 122
Q ss_pred -CccEEEEEEECCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccC
Q 028353 85 -GAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAK 160 (210)
Q Consensus 85 -~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 160 (210)
-.++++|++|++.. .+.+.-.. ++..+... -+.|+++|.||+|..+.+.+... .......+.. ...+++.
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~--~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEI--EASVLEEGGEEPLKISAT 319 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHH--HHHHHhhccccccceeee
Confidence 35889999998864 34554444 44555542 23899999999998755444333 3334444444 7889999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVLKI 176 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (210)
.+.+++..-..+....
T Consensus 320 ~~~~~d~~~~~v~~~a 335 (346)
T COG1084 320 KGCGLDKLREEVRKTA 335 (346)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 9999888777777664
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=5.9e-15 Score=111.37 Aligned_cols=156 Identities=21% Similarity=0.113 Sum_probs=106.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhccc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYR 84 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~ 84 (210)
+--.+++++|+|++|||||++.|++-+. +......+|.......+.+...++++.|+||.-.-. ......++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 3457899999999999999999997664 222233344445555566678889999999832211 23556789
Q ss_pred CccEEEEEEECCCccc-HHHHHHHHHHHHhhhcc----------------------------------------------
Q 028353 85 GAQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYST---------------------------------------------- 117 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---------------------------------------------- 117 (210)
+||.+++|+|+....+ .+.+.. .+.......+
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~-ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIER-ELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHH-HHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 9999999999997554 222222 1111111100
Q ss_pred ------------------CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 118 ------------------NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 118 ------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
..-+|.++|.||.|+.. .++...+.+.. .++.+||+.+.|++++.+.|.+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 12468899999999864 23333333333 789999999999999999999877
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=2.5e-15 Score=127.37 Aligned_cols=152 Identities=22% Similarity=0.168 Sum_probs=96.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------C-------------------CceeeeEEEEEEEC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------------P-------------------TIGVDFKVKYVDVG 58 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-------------~-------------------~~~~~~~~~~~~~~ 58 (210)
....++|+++|++++|||||+++|+...-.... . ..+.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999999854321110 0 11222333333444
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028353 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (210)
.....+.|+||||++.+.......+..+|++++|+|+.....-..... ...+... ...+++|++||+|+......
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~--~~~~~~~---~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH--SFIASLL---GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH--HHHHHHh---CCCeEEEEEEecccccchhH
Confidence 455678899999998876655566789999999999987543222111 1122211 12578899999998642211
Q ss_pred cH----HHHHHHHHHhC---CeEEEEccCCCCCHHH
Q 028353 139 TK----KEGINFAREYG---CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 139 ~~----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 167 (210)
.. .+...+....+ ++++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11 22333334444 4599999999999874
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.65 E-value=3e-15 Score=121.33 Aligned_cols=163 Identities=14% Similarity=0.150 Sum_probs=103.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee----eEEEE------------E-EECC------------
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD----FKVKY------------V-DVGG------------ 59 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~----~~~~~------------~-~~~~------------ 59 (210)
....++|.++|+...|||||++.|++-....... ..+.+ +.... + ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3567899999999999999999999643211110 11111 11000 0 0000
Q ss_pred ----eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 60 ----KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 60 ----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
....+.++|+||++.+.......+..+|++++|+|+.+......... .+..... ..-.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~---lgi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEI---MKLKHIIILQNKIDLVKE 186 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHH---cCCCcEEEEEecccccCH
Confidence 02468899999999888777777889999999999997421122222 2222221 112468899999999643
Q ss_pred cee--cHHHHHHHHHH---hCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 136 RVV--TKKEGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 136 ~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
... ..+++..+... ...+++++||++|.|++.+++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 221 12233333332 3578999999999999999999887554
No 254
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.65 E-value=6e-16 Score=109.85 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhc---ccCccEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSY---YRGAQGI 89 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~d~~ 89 (210)
.-.|+++|+.|+|||+|...|..+...+.......... +.+ ......+.++|+|||...+...... ...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 34689999999999999999999866544333322211 112 2233467888999999988754443 7789999
Q ss_pred EEEEECCC-cccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCC
Q 028353 90 IMVYDVTR-RDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~ 135 (210)
|||+|.+. ...+..+.++++..+..-. ....+|++|+.||+|+..+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999874 3345555554555444322 3457899999999998644
No 255
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=2.7e-15 Score=118.18 Aligned_cols=171 Identities=20% Similarity=0.227 Sum_probs=122.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCCCCceeeeEEEE----EEE-CCeEEEEEEEeCCC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELSPTIGVDFKVKY----VDV-GGKKLKLAIWDTAG 71 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~----~~~-~~~~~~~~l~D~~g 71 (210)
....-+..++.+-.-|||||..|++.... .+....-|.|+.... +.. ++..+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34556788999999999999999863210 011112333443333 222 66789999999999
Q ss_pred ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028353 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (210)
|..|.......+..|.+.++|+|++..-..+.+.+.|+ .+ ..+.-+|-|.||+||+.++.... ..++..-.|
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Yl-Al-----e~~LeIiPViNKIDLP~Adperv--k~eIe~~iG 157 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-AL-----ENNLEIIPVLNKIDLPAADPERV--KQEIEDIIG 157 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHH-HH-----HcCcEEEEeeecccCCCCCHHHH--HHHHHHHhC
Confidence 99999888889999999999999999887777777333 33 34567899999999986644322 233344456
Q ss_pred Ce---EEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCccc
Q 028353 152 CL---FIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK 192 (210)
Q Consensus 152 ~~---~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (210)
++ .+.+|||+|.||+++++.|++++.... ....++.++
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~---g~~~~pLkA 198 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK---GDPDAPLKA 198 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhCCCCC---CCCCCcceE
Confidence 54 789999999999999999999984433 444555544
No 256
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.1e-15 Score=117.96 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=110.1
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
..++-=|.++|+..-|||||+..|-+........ |.....+...++ +| -.++|.|||||..|..+...-..-.|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence 3466778999999999999999998776543222 444333444443 33 67899999999999999988888899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CeEEEEc
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECS 158 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~S 158 (210)
++++|+.+.|.---+.+. .|. ++...++|+||++||+|.+... .+.+.+....+| +.++++|
T Consensus 227 IvVLVVAadDGVmpQT~E-----aIk-hAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTLE-----AIK-HAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred EEEEEEEccCCccHhHHH-----HHH-HHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEee
Confidence 999999999864332222 222 2457889999999999987543 233333333333 4589999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028353 159 AKTRVNVQQCFEELVLK 175 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~ 175 (210)
|++|.|++.+-+.++-.
T Consensus 298 Al~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLL 314 (683)
T ss_pred cccCCChHHHHHHHHHH
Confidence 99999999988776643
No 257
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.8e-16 Score=121.39 Aligned_cols=168 Identities=21% Similarity=0.211 Sum_probs=115.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-c--------chhhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-T--------LTSSY 82 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~--------~~~~~ 82 (210)
+..++|+++|+||+|||||+|.|...+...+++.+|+|.......++-..+.+.+.||+|..+-. . .....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 45699999999999999999999999999999999999988888887777889999999965511 1 12334
Q ss_pred ccCccEEEEEEECCCcccHHHHH-HHHHHHHhhh-----ccCCCCcEEEEEeCCCCCCCc-eecHHHHHHHHHHhC---C
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLS-DVWAKEIDLY-----STNQDCIKLLVGNKVDKESER-VVTKKEGINFAREYG---C 152 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-----~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~---~ 152 (210)
+..+|++++|+|+........+. ...+...... ......+++++.||.|+.... .....- ..+....+ .
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence 67899999999995433333322 1122222211 111236889999999986541 121111 11111122 2
Q ss_pred e-EEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 153 L-FIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 153 ~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+ ..++|+++++|++++.+.+.+.+....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 3 566999999999999999998875544
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=4.2e-15 Score=115.36 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=98.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE-------------------ECC-eEEEEEEEeCCCc-
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD-------------------VGG-KKLKLAIWDTAGQ- 72 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g~- 72 (210)
|+++|.|+||||||+++|++.... ..++ |...+.....+. .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 1222 222222222111 122 3478999999996
Q ss_pred ---cccccchhh---cccCccEEEEEEECCCc-------------c---cHHHHHHHHHHH-------------------
Q 028353 73 ---ERFRTLTSS---YYRGAQGIIMVYDVTRR-------------D---TFTNLSDVWAKE------------------- 111 (210)
Q Consensus 73 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~---s~~~~~~~~~~~------------------- 111 (210)
+....+... .++.+|++++|+|+... + .++.+...+...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 48999999999998731 1 121111111100
Q ss_pred -------------------------Hhh--------------------hccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028353 112 -------------------------IDL--------------------YSTNQDCIKLLVGNKVDKESERVVTKKEGINF 146 (210)
Q Consensus 112 -------------------------~~~--------------------~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (210)
+.. ......+|+|+|+||.|+....... ..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~----~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNI----SKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHH----HHH
Confidence 000 0012347999999999975332211 122
Q ss_pred HHHh-CCeEEEEccCCCCCHHHHHH-HHHHHHHcCCCcc
Q 028353 147 AREY-GCLFIECSAKTRVNVQQCFE-ELVLKILDTPSLL 183 (210)
Q Consensus 147 ~~~~-~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~~~~~ 183 (210)
.... ..+++.+||+.+.+++++.+ .+.+.+.+.....
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~ 275 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE 275 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence 2222 45699999999999999998 6888886665444
No 259
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=9.2e-15 Score=111.15 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYR 84 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~ 84 (210)
.-|.++|.|++|||||++.+...+. ...|+ |.........+ ...-.+.+=|+||.-+-. ......+.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 4577999999999999999997764 23444 33333333333 233457777999943222 12233467
Q ss_pred CccEEEEEEECCCccc---HHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEcc
Q 028353 85 GAQGIIMVYDVTRRDT---FTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSA 159 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 159 (210)
++.+++.|+|++..+. .++... +..++..| ..-.++|.+||+||+|+........+....+....+.. .+++|+
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 8999999999986553 444444 45555554 23457899999999997655444444455555555544 222999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 028353 160 KTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.++.|++++...+.+.+.+..
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 316 LTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcccCHHHHHHHHHHHHHHhh
Confidence 999999999999998887765
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.61 E-value=1.1e-15 Score=126.07 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=84.8
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC----------------CC---CCceeeeEEEEEEECCeEEEEEEE
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEE----------------LS---PTIGVDFKVKYVDVGGKKLKLAIW 67 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~--~~~~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~l~ 67 (210)
.+..+..+|+|+|++++|||||+++|+. +.... .. ...+.++......++...+.+++|
T Consensus 6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 4456778999999999999999999863 11100 00 022344444445566677899999
Q ss_pred eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
||||+..+.......++.+|++|+|+|+++...- .... +..... ..++|+++++||+|+...
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRK-LMEVTR----LRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECccccCC
Confidence 9999988877666778999999999999875321 2222 333222 356899999999998643
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=2.3e-14 Score=122.59 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=82.1
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EE---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.+...+|+|+|++++|||||+++|+...- .. .. ...+.+.......+......++++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 45678999999999999999999974211 00 00 122333333333344456789999999998
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.+...+...++.+|++++|+|+.+...-... . ....+. ..++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence 8777788888999999999999887543332 2 222222 34689999999999863
No 262
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.1e-14 Score=113.27 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=103.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC------------------------C------CCCCCCceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN------------------------F------EELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~------------------------~------~~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...++++|+|+..+|||||+-+|+... | ......-|.|+......++...
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456899999999999999999986321 0 0011134556666666677778
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHH------HHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT------NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.++++|+||+..+.......+..+|+.|+|+|+.+.+... ..++ . .++..... -.-+||++||+|+.+-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H-~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-H-AFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-H-HHHHHhcC--CceEEEEEEccccccc
Confidence 89999999999999888888899999999999999874111 1111 1 11111111 2356888999999763
Q ss_pred ceecHHHH----HHHHHHhC-----CeEEEEccCCCCCHHHH
Q 028353 136 RVVTKKEG----INFAREYG-----CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 136 ~~~~~~~~----~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (210)
+....+++ ..+.+..| ++|+++|+..|.|+.+.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 33333332 23333333 56999999999997653
No 263
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.61 E-value=5e-15 Score=96.45 Aligned_cols=137 Identities=20% Similarity=0.154 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----hhhcccCccEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----TSSYYRGAQGII 90 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~~~~~~~~d~~i 90 (210)
-||.++|..|+|||||.+.|.+... .+..|...++... -.+||||.-.-... .......+|+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh-hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 3799999999999999999997654 2333444433211 12499994333332 334456899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF 169 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~ 169 (210)
+|-+++++++-..-. + ..-...|+|-|++|.|+++ ..+.+..+.|..+-|.. +|++|+.++.|+++++
T Consensus 70 ~v~~and~~s~f~p~--f-------~~~~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 70 YVHAANDPESRFPPG--F-------LDIGVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELV 138 (148)
T ss_pred eeecccCccccCCcc--c-------ccccccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence 999999987643221 1 1123456899999999975 45566788898888875 9999999999999999
Q ss_pred HHHHH
Q 028353 170 EELVL 174 (210)
Q Consensus 170 ~~l~~ 174 (210)
+.+..
T Consensus 139 ~~L~~ 143 (148)
T COG4917 139 DYLAS 143 (148)
T ss_pred HHHHh
Confidence 98764
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.60 E-value=1.1e-14 Score=124.50 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=94.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCC--C---CCC------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--E---LSP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.+...+|+|+|++++|||||+++|+...-. . ... ..+.+.......+......+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 445679999999999999999999742110 0 000 22344444444444456789999999998
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 153 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (210)
.+...+...++.+|++++|+|+.+......... |. .+. ..++|+++++||+|+.... .......+...++..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~-~~~----~~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~ 158 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETV-WR-QAN----RYEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGAN 158 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHH-HH-HHH----HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence 877778888999999999999998765543322 32 222 3468999999999997543 112233333333321
Q ss_pred ----EEEEccCCC
Q 028353 154 ----FIECSAKTR 162 (210)
Q Consensus 154 ----~~~~Sa~~~ 162 (210)
.+++|+..+
T Consensus 159 ~~~~~ipis~~~~ 171 (689)
T TIGR00484 159 AVPIQLPIGAEDN 171 (689)
T ss_pred ceeEEeccccCCC
Confidence 566666555
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=8.4e-15 Score=108.43 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=108.0
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE-EEECCeEEEEEEEeCCCccc-------cccchhh
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY-VDVGGKKLKLAIWDTAGQER-------FRTLTSS 81 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~D~~g~~~-------~~~~~~~ 81 (210)
....++|+++|..|+|||||||+|+.+...+... ..+.+..... ..+++ -.+.+||+||..+ +......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4567999999999999999999999776655443 2222221111 12233 4589999999544 5566777
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-------eecHHHHHHHH-------
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-------VVTKKEGINFA------- 147 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~------- 147 (210)
.+.+.|.++++.+..++.---.... |...+.. ..+.++++++|..|...+- ......++++.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f-~~dVi~~---~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDF-LRDVIIL---GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHH-HHHHHHh---ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 8889999999999998764333332 4444433 3347899999999985431 01111111111
Q ss_pred -HHh--CCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 148 -REY--GCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 148 -~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+.. --|++..+...+.|++.+...++..+....
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 111 235788888999999999999999886443
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=9e-14 Score=111.09 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCC--CceeeeEEEEEE-------------------EC-CeEEEEEEEeCCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSP--TIGVDFKVKYVD-------------------VG-GKKLKLAIWDTAG 71 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~--~~~~~~~~~~~~-------------------~~-~~~~~~~l~D~~g 71 (210)
++|+++|.|+||||||+++|++..+.. .++ |...+.....+. .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876532 222 212222221110 11 2346789999999
Q ss_pred ccc----cccchhhc---ccCccEEEEEEECCCc-------------c---cHHHHHHH------------HHHHHh---
Q 028353 72 QER----FRTLTSSY---YRGAQGIIMVYDVTRR-------------D---TFTNLSDV------------WAKEID--- 113 (210)
Q Consensus 72 ~~~----~~~~~~~~---~~~~d~~i~v~d~~~~-------------~---s~~~~~~~------------~~~~~~--- 113 (210)
... ...+-..+ ++.+|++++|+|+... + .++.+... |-...+
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 422 22222233 8899999999999721 0 11111110 000000
Q ss_pred -------------------------h----h--------------------ccCCCCcEEEEEeCCCCCCCceecHHHHH
Q 028353 114 -------------------------L----Y--------------------STNQDCIKLLVGNKVDKESERVVTKKEGI 144 (210)
Q Consensus 114 -------------------------~----~--------------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 144 (210)
. . .....+|+++|+||.|+...... .....
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~-l~~i~ 240 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN-IERLK 240 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH-HHHHH
Confidence 0 0 01135899999999997532211 12222
Q ss_pred HHHHHhCCeEEEEccCCCCCHHH-HHHHHHHHHHcCCCccccc
Q 028353 145 NFAREYGCLFIECSAKTRVNVQQ-CFEELVLKILDTPSLLAEG 186 (210)
Q Consensus 145 ~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~~~~~~~~~~~~~ 186 (210)
.+ .+..++++||+.+.++++ +.+.+++.+...+..++.+
T Consensus 241 ~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d 280 (396)
T PRK09602 241 EE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG 280 (396)
T ss_pred hc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence 22 345699999999999999 7888888877766665543
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=2.7e-13 Score=111.63 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcccc-----ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 62 LKLAIWDTAGQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
.++.|+||||.... .......+..+|++++|+|+....+.... . +...+... ....|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~--~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAV--GQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhc--CCCCCEEEEEEcccCCCcc
Confidence 35789999996542 22334468899999999999875443332 1 33444331 2235999999999986443
Q ss_pred eecHHHHHHHHH----HhC---CeEEEEccCCCCCHHHHHHHHHH
Q 028353 137 VVTKKEGINFAR----EYG---CLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 137 ~~~~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
....+.+..+.. ..+ ..++++||+.|.|++.+++.|..
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 333444444432 122 24999999999999999888876
No 268
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.5e-14 Score=100.09 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=101.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc---CccEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR---GAQGII 90 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i 90 (210)
.-.|+++|+.+||||+|...|..+.+......+....... .+ ....++++|.|||...+.....++. .+-++|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~--r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATY--RL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeE--ee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 3579999999999999999999886655444333322222 22 2223789999999988876666665 789999
Q ss_pred EEEECCC-cccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCc--eecH--------------------------
Q 028353 91 MVYDVTR-RDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESER--VVTK-------------------------- 140 (210)
Q Consensus 91 ~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~--~~~~-------------------------- 140 (210)
+|+|..- ......+.++++..+... .....+|++++-||.|+.-+. ....
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999653 233444555344444332 135568999999999983221 0000
Q ss_pred ------HHHHH--HHH--HhCCeEEEEccCCCCCHHHHHHHHHHH
Q 028353 141 ------KEGIN--FAR--EYGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 141 ------~~~~~--~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
..+.. |.. ...+.+.++|++++ +++++-+|+.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00111 111 12356899999998 899999998765
No 269
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.4e-14 Score=107.10 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=131.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee--------------------eEEEEEEEC------CeEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD--------------------FKVKYVDVG------GKKLK 63 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~--------------------~~~~~~~~~------~~~~~ 63 (210)
...++|.++|+..-|||||.+.|.+-.....+. .-+.+ .+...-... .--..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 567999999999999999999997643211111 00000 000000000 11246
Q ss_pred EEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHH
Q 028353 64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKK 141 (210)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 141 (210)
+.|+|.|||+-+-+....-..-.|++++|++++.+..-.+..+ .+..+... .-..+|++-||+|+...+. ..++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 7889999998776666666667899999999998655444444 33333331 1246889999999965543 3556
Q ss_pred HHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcc
Q 028353 142 EGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAA 205 (210)
Q Consensus 142 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (210)
++++|.+.. +.|++++||..+.|++-+++.|.+.+........+.....-...|...++.++..
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~ 230 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPE 230 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHH
Confidence 677777643 6789999999999999999999999988888888887777788888888776543
No 270
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.53 E-value=4.5e-13 Score=108.61 Aligned_cols=168 Identities=17% Similarity=0.247 Sum_probs=118.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCc----
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGA---- 86 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~---- 86 (210)
..-.|+|+|..++|||||+.+|.+.+. ..++.+.++....+.-+ ....++.+|.+.|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 457899999999999999999986543 23355555544433222 2235789999988777777777766543
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhcc-------------------------------------------------
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST------------------------------------------------- 117 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------- 117 (210)
-++|+|+|.+.|..+-.-...|+..++.+..
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 4789999999987655333335544433210
Q ss_pred ------------CCCCcEEEEEeCCCCCC----Cc-------eecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028353 118 ------------NQDCIKLLVGNKVDKES----ER-------VVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 118 ------------~~~~p~ivv~nK~Dl~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
+-++|++||.+|.|... .. ....+.++.++..+|+.++++|++...+++.++.+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 01479999999999621 11 12234477888899999999999999999999999999
Q ss_pred HHHcCCCc
Q 028353 175 KILDTPSL 182 (210)
Q Consensus 175 ~~~~~~~~ 182 (210)
++...+-.
T Consensus 262 ~l~~~~f~ 269 (472)
T PF05783_consen 262 RLYGFPFK 269 (472)
T ss_pred HhccCCCC
Confidence 99776654
No 271
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.53 E-value=5.1e-13 Score=101.01 Aligned_cols=168 Identities=19% Similarity=0.240 Sum_probs=120.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECC--eEEEEEEEeCCCccccccchhhcccCc----
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGG--KKLKLAIWDTAGQERFRTLTSSYYRGA---- 86 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~~~---- 86 (210)
..-+|+++|+.++||||||.+|.+.+ .+.+..+.++....+.-+. .-.++.+|-+-|+.....+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 34689999999999999999999876 3334455445443333222 235788998888776666666655543
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhcc-------------------------------------------------
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST------------------------------------------------- 117 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------- 117 (210)
..+|++.|.++++.+-...+.|...+.++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 5788999999997655444447776655422
Q ss_pred -----------CCCCcEEEEEeCCCCC----CCce-------ecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHH
Q 028353 118 -----------NQDCIKLLVGNKVDKE----SERV-------VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 118 -----------~~~~p~ivv~nK~Dl~----~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
+-++|++||.+|+|.. .+.. .....++.||..+|...+++|+++..|++-+..+|.++
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 1367999999999982 2221 12334678888999999999999999999999999999
Q ss_pred HHcCCCc
Q 028353 176 ILDTPSL 182 (210)
Q Consensus 176 ~~~~~~~ 182 (210)
.+.-.-.
T Consensus 289 ~yG~~ft 295 (473)
T KOG3905|consen 289 SYGFPFT 295 (473)
T ss_pred hcCcccC
Confidence 8765433
No 272
>PRK00007 elongation factor G; Reviewed
Probab=99.53 E-value=1.8e-13 Score=117.04 Aligned_cols=144 Identities=14% Similarity=0.169 Sum_probs=92.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEE---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~--~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.+...+|+|+|++++|||||+++|+. +.... .. ...+.+.......+......++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45677999999999999999999973 21100 00 122334433333344456789999999988
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC- 152 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 152 (210)
.+.......++.+|++|+|+|+......+.... |.. +. ..++|+++++||+|+.... ..+....+....+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~-~~----~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQ-AD----KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN 158 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHH-HH----HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence 776666677888999999999987754443322 332 22 3467899999999987543 22222333333333
Q ss_pred ---eEEEEccCCC
Q 028353 153 ---LFIECSAKTR 162 (210)
Q Consensus 153 ---~~~~~Sa~~~ 162 (210)
..+++|+..+
T Consensus 159 ~~~~~ipisa~~~ 171 (693)
T PRK00007 159 PVPIQLPIGAEDD 171 (693)
T ss_pred eeeEEecCccCCc
Confidence 2566666655
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=1.5e-13 Score=117.63 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=74.5
Q ss_pred EcCCCCcHHHHHHHHhcCCCCC--------------CCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028353 20 IGDSGVGKSSLLLSFTSDNFEE--------------LSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY 82 (210)
Q Consensus 20 ~G~~~~GKstli~~l~~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (210)
+|++++|||||+++|+...-.. ... ..+.+.......+....+.+++|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999995432110 000 12223333333334456789999999998877777888
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
+..+|++++|+|++.......... |. .+. ..++|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence 899999999999998766554322 32 222 2468999999999985
No 274
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.52 E-value=2.1e-13 Score=100.71 Aligned_cols=163 Identities=15% Similarity=0.187 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------ch---h
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LT---S 80 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~---~ 80 (210)
++|+++|.+|+||||++|.+++........ ....+........++ ..+.++||||...... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999887543331 222223333334555 5578899999432111 11 1
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-------HHHHHHHHHHhCCe
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-------KKEGINFAREYGCL 153 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 153 (210)
....+.+++++|+.+. +-+...... +......+....-..++||.|..|......+. ......+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHHHHH-HHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 1245689999999998 433322221 22222222222334678888888764443321 12345666677878
Q ss_pred EEEEccC------CCCCHHHHHHHHHHHHHcCCC
Q 028353 154 FIECSAK------TRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~ 181 (210)
|..++.+ ....+.+++..+-+.+.++..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 8888777 335688999998888877763
No 275
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=2.8e-13 Score=101.92 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=74.5
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-------
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--T-L------- 78 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-~------- 78 (210)
......++|+++|.+|+|||||+|+|++............+.....+........+.+|||||..... . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45567899999999999999999999988764443322222222222222234678999999965442 1 0
Q ss_pred hhhccc--CccEEEEEEECCCcc-cHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCC
Q 028353 79 TSSYYR--GAQGIIMVYDVTRRD-TFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 79 ~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
...++. ..|++++|..++... .... ..++..+.. +....-.++++|.||.|...+
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 111222 568888887666432 2221 113333333 221222578999999998533
No 276
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=4e-13 Score=102.75 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=95.9
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc--eeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hh
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI--GVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------TS 80 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~ 80 (210)
.....++|+++|.+|+||||++|+|++.......... +.+........ ....+.+|||||....... ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 3457899999999999999999999987653333322 22222222223 3467899999996543211 11
Q ss_pred hcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCceecHHH--------HHHHH--
Q 028353 81 SYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESERVVTKKE--------GINFA-- 147 (210)
Q Consensus 81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--------~~~~~-- 147 (210)
.++ ...|+++||..++... +......++..+.. +....-.+.||+.|+.|...+.....++ .++..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~~i~~ 190 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLRVIHS 190 (313)
T ss_pred HHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHHHHHH
Confidence 111 2589999997655321 21111112232322 2222335789999999975433222211 11111
Q ss_pred -HH-h-------CCe--EEEEccCCCCC-------------HHHHHHHHHHHHHcCCCccc
Q 028353 148 -RE-Y-------GCL--FIECSAKTRVN-------------VQQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 148 -~~-~-------~~~--~~~~Sa~~~~~-------------i~~~~~~l~~~~~~~~~~~~ 184 (210)
.. . ..| ++|-|.....| +..++..|.+.+....+.+.
T Consensus 191 ~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~ 251 (313)
T TIGR00991 191 GAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIH 251 (313)
T ss_pred HhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeE
Confidence 11 1 122 55555443322 78888888888877665543
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=2.9e-14 Score=122.30 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=82.7
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcC---------------CCCCCCC----CceeeeEEEEEEECCeEEEEEEEeC
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD---------------NFEELSP----TIGVDFKVKYVDVGGKKLKLAIWDT 69 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~---------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~ 69 (210)
.+.+...||+++|+.++|||||+++|+.. ++..... +.........+.+++..+.+++|||
T Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDT 93 (720)
T TIGR00490 14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDT 93 (720)
T ss_pred hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeC
Confidence 34456789999999999999999999742 1211100 2222222223345777899999999
Q ss_pred CCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
||+..+.......++.+|++++|+|+........... |.. . ...+.|.++++||+|..
T Consensus 94 PG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~-~----~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 94 PGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQ-A----LKENVKPVLFINKVDRL 151 (720)
T ss_pred CCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHH-H----HHcCCCEEEEEEChhcc
Confidence 9999888777888999999999999987543332221 322 1 13456888999999985
No 278
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.48 E-value=2.5e-12 Score=103.89 Aligned_cols=166 Identities=23% Similarity=0.285 Sum_probs=119.2
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (210)
.+......+++.++|+.++|||.+++.++++.+...+. +....+....+...+....+.+-|.+-. ...-+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 44566788999999999999999999999988876443 4444444444555566666777787743 212111111 67
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCe-EEEEccCCCC
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCL-FIECSAKTRV 163 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 163 (210)
||++.++||.+++.+|......+.... .....|+++|++|.|+.+... ...+. .+++..++++ .+.+|.+...
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~----~~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYF----DLYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhh----hccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCC
Confidence 999999999999999988766332222 236799999999999965543 33333 7889999987 7778888533
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028353 164 NVQQCFEELVLKILDTP 180 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~ 180 (210)
. .++|..|..+..-..
T Consensus 571 s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 571 S-NELFIKLATMAQYPH 586 (625)
T ss_pred C-chHHHHHHHhhhCCC
Confidence 4 899999998876554
No 279
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.48 E-value=1.1e-12 Score=102.44 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=86.1
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
..+.+.+||++|+...+..|..++.+++++++|+|+++. ..+......|...+.. ....++|+++++||
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~-~~~~~~pill~~NK 237 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS-RWFANTSIILFLNK 237 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC-ccccCCCEEEEccC
Confidence 456789999999999999999999999999999999974 3455555534444432 33467999999999
Q ss_pred CCCCCC----------------ceecHHHHHHHHHH----------hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 130 VDKESE----------------RVVTKKEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 130 ~Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.|+-.+ ..-+.+.+..+... ..+.+..++|.+..++..+|+.+.+.+++.
T Consensus 238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 996211 01233444444432 123467789999999999999999988764
No 280
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=109.79 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=110.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccch----hhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-----RTLT----SSY 82 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~----~~~ 82 (210)
...-.++++|.|++|||||++.+...+. ++.+...++......+++....+++++||||.-.. ..+- -+.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 3456789999999999999999986654 23333333344444566777788899999993221 1111 111
Q ss_pred ccCccEEEEEEECCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH--HHHHHH-hCCeEEEE
Q 028353 83 YRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG--INFARE-YGCLFIEC 157 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~-~~~~~~~~ 157 (210)
..--.+|+|++|++.. .|...-.. ++..++ ....+.|.|+|.||+|+...+.++.+.. .+.... -+++++++
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Qvk-LfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHH-HHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 1223688999999864 34443333 333333 2356789999999999987777765542 222233 34889999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028353 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
|+.+.+|+.++....+++++..+
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHH
Confidence 99999999999998888887665
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.46 E-value=8.6e-13 Score=100.79 Aligned_cols=152 Identities=22% Similarity=0.193 Sum_probs=107.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC-------------C-------------------CCCCCceeeeEEEEEEEC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-------------E-------------------ELSPTIGVDFKVKYVDVG 58 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~-------------~-------------------~~~~~~~~~~~~~~~~~~ 58 (210)
....+|++.+|...=||||||-||+...- + +.....|.|+......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 45679999999999999999999974310 0 001134556666666667
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028353 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (210)
..+.++.+-|||||++|......-...||+.|+++|+...-.-+.-+.-++..+. .=..+++++||+||.+..+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHH
Confidence 7788899999999999998888888899999999999765433322221221111 11467899999999776555
Q ss_pred cHHHH----HHHHHHhCC---eEEEEccCCCCCHHH
Q 028353 139 TKKEG----INFAREYGC---LFIECSAKTRVNVQQ 167 (210)
Q Consensus 139 ~~~~~----~~~~~~~~~---~~~~~Sa~~~~~i~~ 167 (210)
..+++ ..++..+++ .++++||..|+|+..
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 44443 455566665 499999999999754
No 282
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.9e-12 Score=97.08 Aligned_cols=165 Identities=19% Similarity=0.190 Sum_probs=98.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC----CCC--CCCCceee----eEEEEEE-----ECCeEEEEEEEeCCCccccc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN----FEE--LSPTIGVD----FKVKYVD-----VGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~----~~~--~~~~~~~~----~~~~~~~-----~~~~~~~~~l~D~~g~~~~~ 76 (210)
..++++.++|+..||||||.++|..-. |.. .+.+-+.+ +....+. -.++..++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345999999999999999999996432 111 11112221 1111111 14556789999999996655
Q ss_pred cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---ecHHHHHHHH---HHh
Q 028353 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VTKKEGINFA---REY 150 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~---~~~ 150 (210)
........-.|..++|+|+.....-+..+-..+-.+. -...|||+||+|...+.. ...+...... ...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 4444444455889999999887655555442322222 134678889988743321 1112222222 222
Q ss_pred ----CCeEEEEccCCC----CCHHHHHHHHHHHHHcCCCc
Q 028353 151 ----GCLFIECSAKTR----VNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 151 ----~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~ 182 (210)
+.|++++||+.| .++.++...+-.++.+..+.
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 368999999999 56666666666666554443
No 283
>PRK13768 GTPase; Provisional
Probab=99.45 E-value=8.1e-13 Score=100.04 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=71.2
Q ss_pred EEEEEeCCCcccc---ccchhhccc---C--ccEEEEEEECCCcccHHHHHHH-HHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 63 KLAIWDTAGQERF---RTLTSSYYR---G--AQGIIMVYDVTRRDTFTNLSDV-WAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 63 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
.+.+||+||..+. ...+..+++ . .+++++|+|+............ |+...... ..++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence 5889999997553 233333322 2 8999999999775544333221 22222211 2468999999999986
Q ss_pred CCceecH--HHHH------------------------HHHHHhC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 134 SERVVTK--KEGI------------------------NFAREYG--CLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 134 ~~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
....... .... ......+ .+++++|++++.|++++++++.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 5432211 0000 1122233 47899999999999999999988773
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.45 E-value=1.4e-13 Score=101.85 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=100.4
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee----eEEEEEE---------------------------
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD----FKVKYVD--------------------------- 56 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~----~~~~~~~--------------------------- 56 (210)
...+..+.-|+++|..|||||||++||...-.....+....+ +....+.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 445678899999999999999999999643221111100000 0000000
Q ss_pred ------------------ECCeEEEEEEEeCCCccc-ccc-----chhhcc--cCccEEEEEEECC---CcccHHHHHHH
Q 028353 57 ------------------VGGKKLKLAIWDTAGQER-FRT-----LTSSYY--RGAQGIIMVYDVT---RRDTFTNLSDV 107 (210)
Q Consensus 57 ------------------~~~~~~~~~l~D~~g~~~-~~~-----~~~~~~--~~~d~~i~v~d~~---~~~s~~~~~~~ 107 (210)
-....+...++||||+-+ +.. ++...+ ...-++++|+|.. ++.+|-....
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl- 171 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML- 171 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH-
Confidence 011234678999999643 221 111111 1346788999954 4455554443
Q ss_pred HHHHHhhhccCCCCcEEEEEeCCCCCCCc-----eecHH---HHHH-------------HH-----HHhCCeEEEEccCC
Q 028353 108 WAKEIDLYSTNQDCIKLLVGNKVDKESER-----VVTKK---EGIN-------------FA-----REYGCLFIECSAKT 161 (210)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~---~~~~-------------~~-----~~~~~~~~~~Sa~~ 161 (210)
+.--+. -+...|+|++.||.|+.+.. .-+.+ ++.. .+ .-.++..+-+|+.+
T Consensus 172 YAcSil---yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t 248 (366)
T KOG1532|consen 172 YACSIL---YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT 248 (366)
T ss_pred HHHHHH---HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence 222222 25678999999999986431 00111 1110 00 01246689999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcccc
Q 028353 162 RVNVQQCFEELVLKILDTPSLLAE 185 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~~~~~ 185 (210)
|.|.+++|..+...+-+.......
T Consensus 249 G~G~ddf~~av~~~vdEy~~~ykp 272 (366)
T KOG1532|consen 249 GEGFDDFFTAVDESVDEYEEEYKP 272 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999998877665555443
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.45 E-value=2e-12 Score=113.08 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=89.5
Q ss_pred cHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe-----------E-----EEEEEEeCCCccccccchhhcccCccE
Q 028353 26 GKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK-----------K-----LKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 26 GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~-----~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+||||+.++.+........ ..........+..+.. . ..+.||||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999998766543222 2222222222222210 0 138999999999988877777888999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------HHHHH-H-------
Q 028353 89 IIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------KKEGI-N------- 145 (210)
Q Consensus 89 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~~~~-~------- 145 (210)
+++|+|+++. .+++.+ ..+. ..++|+++|+||+|+....... .+... +
T Consensus 553 vlLVVDa~~Gi~~qT~e~I-----~~lk----~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI-----NILR----QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEECcccCCHhHHHHH-----HHHH----HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999874 333322 2222 2357999999999985332210 01100 0
Q ss_pred H---HHH-------------h--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 146 F---ARE-------------Y--GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 146 ~---~~~-------------~--~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
+ ... + .++++++||++|.|+++++.++....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0 011 1 35799999999999999998876543
No 286
>PTZ00258 GTP-binding protein; Provisional
Probab=99.44 E-value=3.4e-12 Score=101.18 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=55.7
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEE--EEECCe---------------EEEEEEEeCCCc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKY--VDVGGK---------------KLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~l~D~~g~ 72 (210)
.....++|+++|.||||||||+|+|++... .....+++|..... +.+... ..++.++|+||.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 346778999999999999999999987653 32222333322221 222211 235899999994
Q ss_pred ccc-------ccchhhcccCccEEEEEEECC
Q 028353 73 ERF-------RTLTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 73 ~~~-------~~~~~~~~~~~d~~i~v~d~~ 96 (210)
..- .......++.+|++++|+|..
T Consensus 96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 321 112233567899999999974
No 287
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=2.5e-12 Score=93.85 Aligned_cols=103 Identities=21% Similarity=0.130 Sum_probs=64.8
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK 141 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (210)
....++++.|.......... -+|.+|.|+|+.+..+.... +...+. ..-++++||+|+.+......+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~~---~~~qi~-------~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPRK---GGPGIT-------RSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhhh---hHhHhh-------hccEEEEEhhhccccccccHH
Confidence 45567788774322222221 25889999999976653221 111111 123899999999743222333
Q ss_pred HHHHHHHH--hCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 142 EGINFARE--YGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 142 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
...+..+. .+.+++++||++|.|++++|+++.+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33344443 4578999999999999999999997653
No 288
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.42 E-value=4.2e-12 Score=100.26 Aligned_cols=162 Identities=18% Similarity=0.234 Sum_probs=113.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--CCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
..-+|+|+.+..-|||||+..|+... |... ...-|.|+-...-.+.+....++++|||||..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34589999999999999999997432 2111 11345555555556667778999999999999999
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHh------
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREY------ 150 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~------ 150 (210)
.....+.-+|++++++|+.+..- ...+..+.. +...+.+-|||+||+|.+.++. .-..++..++.++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkK-----Al~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPM-PQTRFVLKK-----ALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCC-CchhhhHHH-----HHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999999998532 222211222 2234455589999999987653 2334455555544
Q ss_pred -CCeEEEEccCCC----------CCHHHHHHHHHHHHHcCC
Q 028353 151 -GCLFIECSAKTR----------VNVQQCFEELVLKILDTP 180 (210)
Q Consensus 151 -~~~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~ 180 (210)
++|+++.|++.| .++.-+|+.|++.+....
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 568999999876 357778888888774443
No 289
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.42 E-value=7e-12 Score=98.74 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=83.9
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
...+.+||.+|+...+..|..++.+++++++|+|+++. ..+......|...+.. ..-.++|++|++||.
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~-~~~~~~piil~~NK~ 261 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS-RWFANTSIILFLNKI 261 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-ccccCCcEEEEEecH
Confidence 45688999999999999999999999999999999973 3455555534444432 334679999999999
Q ss_pred CCCCC--------------c-eecHHHHHHHHHH-----------hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 131 DKESE--------------R-VVTKKEGINFARE-----------YGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 131 Dl~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|+-.+ . .-+.+.+..+... ..+.++.++|.+..++..+|+.+.+.+++.
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 97211 0 0123333333321 113367888999999999999998888654
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.40 E-value=1.1e-12 Score=114.31 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=82.6
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCC---CceeeeEE--EEEEE--------------
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSP---TIGVDFKV--KYVDV-------------- 57 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~------------~~~~---~~~~~~~~--~~~~~-------------- 57 (210)
.+.+...+|+|+|+.++|||||+.+|+...-. ...+ ..+.++.. ..+..
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 45667789999999999999999999754311 0000 11222221 11111
Q ss_pred CCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 58 GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
.+..+.++++||||+..+.......++.+|++|+|+|+...-......- |.... ..++|+++++||+|+.
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~-----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL-----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHH-----HCCCCEEEEEECCccc
Confidence 2236788999999999998888888899999999999998755443322 43322 3568999999999986
No 291
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.39 E-value=3.6e-12 Score=96.04 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=75.6
Q ss_pred cccccchhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (210)
+.+..+.+.+++++|++++|+|+.++. ++..+.. |+..+.. .++|+++|+||+||........+.+..+ ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCC
Confidence 455667778899999999999999887 7888776 7765542 5789999999999965544443444443 4578
Q ss_pred CeEEEEccCCCCCHHHHHHHHHH
Q 028353 152 CLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
.+++++||+++.|++++|..+..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 89999999999999999988764
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=1.6e-12 Score=113.18 Aligned_cols=117 Identities=20% Similarity=0.185 Sum_probs=79.4
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------------CceeeeEE--EEEEEC--------CeEEEEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---------------TIGVDFKV--KYVDVG--------GKKLKLA 65 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~--~~~~~~--------~~~~~~~ 65 (210)
.+...+|+++|+.++|||||+++|+...-..... ..+.+... ..+... +....++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4556699999999999999999998532110000 11122211 112222 2257799
Q ss_pred EEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
++||||+..+.......++.+|++|+|+|+...-..... ..|.. +. ..++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~-~~----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQ-AL----QERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHH-HH----HcCCCEEEEEEChhhh
Confidence 999999998888778888999999999999986543332 21432 22 3458999999999985
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.39 E-value=4e-12 Score=109.51 Aligned_cols=119 Identities=19% Similarity=0.203 Sum_probs=80.3
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC------------CC---CceeeeE----EEEEEECCeEEEEEEEeC
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL------------SP---TIGVDFK----VKYVDVGGKKLKLAIWDT 69 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~------------~~---~~~~~~~----~~~~~~~~~~~~~~l~D~ 69 (210)
.+.+...+|+++|+.++|||||+.+|+...-... .+ .-+.+.. ...+..++..+.++++||
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 94 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT 94 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence 3455677899999999999999999975321100 00 0111111 112233556788999999
Q ss_pred CCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
||+..+.......++.+|++|+|+|+......... ..|..... .+.|.++++||+|+.
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~-----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR-----ERVKPVLFINKVDRL 152 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH-----cCCCeEEEEECchhh
Confidence 99998888778888999999999998876443322 22433222 245779999999975
No 294
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.38 E-value=1.7e-11 Score=96.46 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=97.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC----CCC-----------CCCCCce---eeeE-------EEEEE-ECCeEEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD----NFE-----------ELSPTIG---VDFK-------VKYVD-VGGKKLKLA 65 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~----~~~-----------~~~~~~~---~~~~-------~~~~~-~~~~~~~~~ 65 (210)
.-.+-|.|+|+.++|||||||+|.+. ... -.+...| +|.. ...+. .++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34688999999999999999999876 332 2222333 2221 22222 255668899
Q ss_pred EEeCCCccccc-------cc----------------------hhhccc-CccEEEEEE-ECC----CcccHHHHHHHHHH
Q 028353 66 IWDTAGQERFR-------TL----------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLSDVWAK 110 (210)
Q Consensus 66 l~D~~g~~~~~-------~~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~ 110 (210)
++||+|-..-. .. .+..+. .+|+.++|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999821100 01 233455 789999888 664 12334455444666
Q ss_pred HHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC--CCHHHHHHHHHH
Q 028353 111 EIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR--VNVQQCFEELVL 174 (210)
Q Consensus 111 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~l~~ 174 (210)
.++ ..++|++++.|+.|..... ..+....+...++++++.+|+..- .++..++..++-
T Consensus 175 eLk----~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 175 ELK----ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHH----hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 665 4679999999999943222 333445666778898887876543 355555555443
No 295
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=3.5e-12 Score=86.08 Aligned_cols=115 Identities=30% Similarity=0.381 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|+.|+|||+|+.++....+...+ +. .+.. +........+.++.+++|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~-~~-~t~~-----------------------~~~~~~~~~~s~~~~~~v~~ 55 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP-TV-FTIG-----------------------IDVYDPTSYESFDVVLQCWR 55 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccC-ce-ehhh-----------------------hhhccccccCCCCEEEEEEE
Confidence 58999999999999999999877764322 11 1111 22233445677899999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
..+..+++.+ |...+.. ..+.+.|.++++||.|+.....+..++. ..++++|++++.|+.
T Consensus 56 ~~~~~s~~~~---~~~~i~~-~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 56 VDDRDSADNK---NVPEVLV-GNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred ccCHHHHHHH---hHHHHHh-cCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 9999988765 5555544 3456789999999999854333333333 334678888888874
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.36 E-value=1.2e-11 Score=91.06 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCCCcee-eeEEEEEEECC------------------
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSPTIGV-DFKVKYVDVGG------------------ 59 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~------------~~~~~~~~-~~~~~~~~~~~------------------ 59 (210)
......|.|+|+.|+|||||++++...... ....+... ......+.+.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 345788999999999999999998643100 00000000 00000011100
Q ss_pred --eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce
Q 028353 60 --KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV 137 (210)
Q Consensus 60 --~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (210)
....+.++|+.|.-... . .+....+..+.|+|+.+...... . . .. ....|.++++||+|+.....
T Consensus 99 ~~~~~d~IiIEt~G~l~~~-~--~~~~~~~~~i~Vvd~~~~d~~~~--~-~---~~----~~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCP-A--DFDLGEHMRVVLLSVTEGDDKPL--K-Y---PG----MFKEADLIVINKADLAEAVG 165 (207)
T ss_pred ccCCCCEEEEecCCCcCCC-c--ccccccCeEEEEEecCcccchhh--h-h---Hh----HHhhCCEEEEEHHHccccch
Confidence 12356677777721111 1 11122455567777775443111 1 1 11 12357799999999965433
Q ss_pred ecHHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHH
Q 028353 138 VTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 138 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
...+......... ..+++++||+++.|++++|+++.+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2333344444443 3789999999999999999999875
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.35 E-value=9.4e-12 Score=96.96 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-- 138 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-- 138 (210)
.+.+.|+||+|....... ....+|.++++.+....+....... .+.. ..-++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhh------hhheEEeehhcccchhHHHH
Confidence 467899999997643322 4567999999987555554443321 1111 123899999998643311
Q ss_pred cHHHHHHHHHH-------hCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 139 TKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 139 ~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
...+....... +..+++.+||+++.|++++++.+.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11222222221 2257999999999999999999998753
No 298
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=4e-11 Score=89.36 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=83.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
......|+++|++|+|||||++.+.+..... .....+. + .+ ......++.++|+||.. ......+..+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 3456789999999999999999998642211 1112221 1 11 11245678899999853 2223346789999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCce-e--cHHHHHH-HHHH--hCCeEEEEccCCC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERV-V--TKKEGIN-FARE--YGCLFIECSAKTR 162 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~~~Sa~~~ 162 (210)
++|+|++........ . +...+.. .+.|. ++|+||.|+..... . ..+.++. +... .+.+++.+||++.
T Consensus 108 llviDa~~~~~~~~~-~-i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 108 LLLIDASFGFEMETF-E-FLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEecCcCCCHHHH-H-HHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999875543322 2 3333332 34674 45999999853321 1 1122222 2221 2467999999988
Q ss_pred C
Q 028353 163 V 163 (210)
Q Consensus 163 ~ 163 (210)
-
T Consensus 182 ~ 182 (225)
T cd01882 182 G 182 (225)
T ss_pred C
Confidence 4
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.8e-11 Score=99.02 Aligned_cols=158 Identities=21% Similarity=0.175 Sum_probs=104.9
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcC--------------------CCC----------CCCCCceeeeEEEEEE
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD--------------------NFE----------ELSPTIGVDFKVKYVD 56 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~--------------------~~~----------~~~~~~~~~~~~~~~~ 56 (210)
.+......+.++++|+..+|||||+.+++.. +.+ ......|.+.......
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 3444557899999999999999999988532 110 1111345555566666
Q ss_pred ECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc---HH---HHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 57 VGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 57 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
++.....++|+|+||+..|......-...+|+.++|+|++-.+- |+ ..++ ....++. .. -.-++|++||+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~-Lg--i~qlivaiNKm 325 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS-LG--ISQLIVAINKM 325 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH-cC--cceEEEEeecc
Confidence 67778899999999999999888888899999999999886421 11 1122 2222222 11 23578889999
Q ss_pred CCCCCceecHHH----HHHHH-HHhC-----CeEEEEccCCCCCHHHH
Q 028353 131 DKESERVVTKKE----GINFA-REYG-----CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 131 Dl~~~~~~~~~~----~~~~~-~~~~-----~~~~~~Sa~~~~~i~~~ 168 (210)
|+.+=..-..++ +..+. ...| +.|++||+..|+|+-..
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 995433222222 33344 2333 46999999999997654
No 300
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.32 E-value=4.6e-11 Score=93.83 Aligned_cols=81 Identities=21% Similarity=0.163 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeE---------------EEEEEEeCCCccccc-
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKK---------------LKLAIWDTAGQERFR- 76 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~l~D~~g~~~~~- 76 (210)
++|+++|.|+||||||+++|++... .....+++|... -.+.+...+ ..+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 6899999999999999999998773 322222222211 122222211 258999999953211
Q ss_pred ---c---chhhcccCccEEEEEEECC
Q 028353 77 ---T---LTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 77 ---~---~~~~~~~~~d~~i~v~d~~ 96 (210)
. .....++.+|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2223467899999999984
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.31 E-value=2.7e-12 Score=96.04 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=57.7
Q ss_pred EEEEEeCCCccccccchhhcc--------cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 63 KLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.+.++||||+.++...|...- ...-++++++|+....+-......++..... ....+.|.|.|.||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 688999999887665544432 3345888999977544322211112111111 1134689999999999976
Q ss_pred Cce---e----------------cHHHHHHHHH---HhC-C-eEEEEccCCCCCHHHHHHHHHHHH
Q 028353 135 ERV---V----------------TKKEGINFAR---EYG-C-LFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 135 ~~~---~----------------~~~~~~~~~~---~~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
... . .......++. ..+ + .++++|+.+++|+++++..+-+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 320 0 0011111111 112 3 699999999999999998887654
No 302
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-11 Score=98.50 Aligned_cols=172 Identities=23% Similarity=0.356 Sum_probs=130.8
Q ss_pred CCCCcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028353 1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
++|+++.-...-..+|+.|+|..++|||+|+++++.+.|.+...+.+.. +...+.+++....+.+.|.+|... .
T Consensus 17 vnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~-~kkE~vv~gqs~lLlirdeg~~~~-----a 90 (749)
T KOG0705|consen 17 VNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGR-FKKEVVVDGQSHLLLIRDEGGHPD-----A 90 (749)
T ss_pred ccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCcc-ceeeEEeeccceEeeeecccCCch-----h
Confidence 4566776666778899999999999999999999999987655544444 456677888888888899888322 3
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--CCCceecHHHHHHHHHHh-CCeEEEE
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVTKKEGINFAREY-GCLFIEC 157 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~-~~~~~~~ 157 (210)
.|...+|++|+||...+..+|+.+.. +...+..+.....+|+++++++.=. ...+.+.......++..+ .+.+|++
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et 169 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET 169 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence 44567999999999999999999987 4444444455677898888877443 334555555555555544 5779999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028353 158 SAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.+..|.++...|..+...+...
T Consensus 170 ~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 170 CATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred chhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999877655
No 303
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.25 E-value=6.1e-11 Score=93.22 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=81.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----hhhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----TSSY 82 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~ 82 (210)
..+++|+|+|.+|+|||||||.|.|-.. ....+ ...++.....+... .--.+.+||+||..-..-. -..-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4678999999999999999999976432 22222 22333333333322 1224899999995322211 1223
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceecHH----HHHHHHH---
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVTKK----EGINFAR--- 148 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~----~~~~~~~--- 148 (210)
+...|.+|++.+.. |....-.+...+.. .++|+.+|-+|.|.. .++....+ ++++.+.
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 56779888877632 33332224444443 568999999999961 12222222 2333322
Q ss_pred -HhCC---eEEEEccCCCC--CHHHHHHHHHHHHHcCCC
Q 028353 149 -EYGC---LFIECSAKTRV--NVQQCFEELVLKILDTPS 181 (210)
Q Consensus 149 -~~~~---~~~~~Sa~~~~--~i~~~~~~l~~~~~~~~~ 181 (210)
+.++ ++|-+|+.+-. ++..+.+.+.+.+...+.
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 2243 38888888654 577777777776655443
No 304
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.4e-11 Score=94.58 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhc--CC--------------C-----CCCCCCceeeeEEEEEEECCeEEEEEEE
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS--DN--------------F-----EELSPTIGVDFKVKYVDVGGKKLKLAIW 67 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~--~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (210)
.+..+.-..+|+-+|.+|||||-..|+. +- + ..-...-|..+....+.+++....++|.
T Consensus 7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence 4456677889999999999999998751 10 0 0001122444555556677778889999
Q ss_pred eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028353 68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA 147 (210)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 147 (210)
|||||+.+..-....+..+|..|+|+|+...-.-...+ +....+ -.++||+=++||.|.+... ..+...++.
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcr----lR~iPI~TFiNKlDR~~rd--P~ELLdEiE 158 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCR----LRDIPIFTFINKLDREGRD--PLELLDEIE 158 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHh----hcCCceEEEeeccccccCC--hHHHHHHHH
Confidence 99999999998888899999999999999865443332 333333 4689999999999976443 233344444
Q ss_pred HHhCCeE
Q 028353 148 REYGCLF 154 (210)
Q Consensus 148 ~~~~~~~ 154 (210)
..+++..
T Consensus 159 ~~L~i~~ 165 (528)
T COG4108 159 EELGIQC 165 (528)
T ss_pred HHhCcce
Confidence 5555443
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.23 E-value=1.8e-10 Score=88.35 Aligned_cols=142 Identities=17% Similarity=0.253 Sum_probs=77.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------CCceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER------- 74 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 74 (210)
-.++|+|+|.+|+|||||||.|++....... .+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4699999999999999999999976543221 1222333334445577889999999999211
Q ss_pred -----------cccch-------hhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 75 -----------FRTLT-------SSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 -----------~~~~~-------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
+.... +..+ ..+|+++|+++++... +..+.-.++..+ ...+++|-|+.|.|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-----s~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-----SKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-----TTTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-----cccccEEeEEecccccC
Confidence 00000 0001 2568999999987532 122211133333 34578999999999854
Q ss_pred Ccee--cHHHHHHHHHHhCCeEEEEccC
Q 028353 135 ERVV--TKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
..++ ..+.+.......++.++....-
T Consensus 157 ~~el~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 157 PEELQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S------
T ss_pred HHHHHHHHHHHHHHHHHcCceeeccccc
Confidence 3322 2344555566677776654433
No 306
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.1e-11 Score=97.35 Aligned_cols=158 Identities=21% Similarity=0.158 Sum_probs=101.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCC----CceeeeEEEE--------EEEC----CeEEEEEEEeCCCccc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSP----TIGVDFKVKY--------VDVG----GKKLKLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~----~~~~~~~~~~--------~~~~----~~~~~~~l~D~~g~~~ 74 (210)
-+..-|||+|+..+|||-|+..+-+..... .+. .+|.++.... +.-+ ..--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 345668999999999999999887543211 111 2233332111 0000 0112467889999999
Q ss_pred cccchhhcccCccEEEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---------------
Q 028353 75 FRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--------------- 136 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------- 136 (210)
|..+.......||.+|+|+|+... .+.+.+.. ++ ..+.|+||+.||+|..-.+
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l-----LR----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL-----LR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHHHH-----HH----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence 999999999999999999999875 34443322 22 4578999999999973111
Q ss_pred --eecHH------HHHHHHHHh-------------C--CeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 137 --VVTKK------EGINFAREY-------------G--CLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 137 --~~~~~------~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.+..+ .+.-.+... + +.++++||..|+||.+++-+|++....
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 00000 011111111 1 347999999999999999999987644
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.22 E-value=8e-11 Score=91.47 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=63.3
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 140 (210)
.+.+.|+||+|..... ...+..+|.++++...... +.+.. +...+ .++|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence 4678899999854222 2345667888888544433 33322 22211 2467799999999965432110
Q ss_pred --H----HHHHHHH---HhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 141 --K----EGINFAR---EYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 141 --~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
. ....+.. .+..+++.+||+++.|++++++++.+.+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0 0011111 1234689999999999999999998864
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.21 E-value=8e-11 Score=83.85 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=42.6
Q ss_pred EEEEEeCCCccc----cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 63 KLAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 63 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
.+.|+|+||... ....+..++..+|++++|.+++...+...... +...... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT----TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC----CCCeEEEEEcCC
Confidence 478999999543 22456677899999999999998666554433 4444432 333488888884
No 309
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.21 E-value=3.3e-10 Score=88.02 Aligned_cols=124 Identities=20% Similarity=0.182 Sum_probs=84.9
Q ss_pred EEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc----------HHHHHHHHHHHHhhhccCCCCcEE
Q 028353 55 VDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT----------FTNLSDVWAKEIDLYSTNQDCIKL 124 (210)
Q Consensus 55 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~i 124 (210)
+.+.-....+.++|.+|+..-+..|..++.+++++|+|+++++.+. +..... +...+.......+.++|
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~tsii 266 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANTSII 266 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccCcEE
Confidence 3334445778899999999999999999999999999999886321 223333 33334333455689999
Q ss_pred EEEeCCCCCCC--------------ce-ecHHHHHHHHHHh----------CCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 125 LVGNKVDKESE--------------RV-VTKKEGINFAREY----------GCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 125 vv~nK~Dl~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
++.||.|+-.+ .. -..+++..+.... .+-+..+.|.+-.+|+.+|+.+.+.+.+.
T Consensus 267 LFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 267 LFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred EEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 99999998211 11 1233333333211 23367778899999999999999988654
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3e-10 Score=96.19 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=88.4
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCC---CCceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELS---PTIGVDFKVKYVDVGGK-KLKLAIWDTAGQ 72 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~ 72 (210)
.+..-+|.++|+.++|||||..+++...- .+.. ..-|.++......+... .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 67788999999999999999999974321 1111 12344555555555555 589999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
.+|.......++-+|++++|+|+...-..+.-.- |... ...++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa-----~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQA-----DKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHH-----hhcCCCeEEEEECcccccc
Confidence 9999999999999999999999998754433322 5433 3467999999999998543
No 311
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.6e-10 Score=88.03 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
-|...|+-.-|||||++.+.+.....-. .--|.+.....+.....+..+.|+|.||++.+-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4677899999999999999977543222 24555555555555556668999999999998888888888899999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH---hCCeEEEEccCCCCCHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE---YGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
|+++.-..+..+. +..+... .-...++|+||.|+.+...+. +...++... ...+++.+|+++|.||+++.+
T Consensus 82 ~~deGl~~qtgEh--L~iLdll---gi~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGEH--LLILDLL---GIKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHHH--HHHHHhc---CCCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 9976544443332 2233321 113458999999997654222 122222222 346689999999999999999
Q ss_pred HHHHHHH
Q 028353 171 ELVLKIL 177 (210)
Q Consensus 171 ~l~~~~~ 177 (210)
.|.+..-
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999883
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.18 E-value=2e-11 Score=90.50 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=86.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC------C-----CCCCCC-C---------------ceeeeEEEEEEECC-----
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD------N-----FEELSP-T---------------IGVDFKVKYVDVGG----- 59 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~------~-----~~~~~~-~---------------~~~~~~~~~~~~~~----- 59 (210)
...+.|.|.|+||+|||||+..|... + ..+.++ + .....+...+...+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35679999999999999999988421 0 001111 0 11123333333221
Q ss_pred -------------eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028353 60 -------------KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126 (210)
Q Consensus 60 -------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv 126 (210)
..+.+.|++|.|.-+... ....-+|.+++|.-..-.+..+.++. -..++ .=++|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~Ka-GimEi---------aDi~v 173 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKA-GIMEI---------ADIFV 173 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-T-THHHH----------SEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhh-hhhhh---------ccEEE
Confidence 135678888887433332 23445899999999888877665544 22223 23899
Q ss_pred EeCCCCCCCceecHHHHHHHHHH-------hCCeEEEEccCCCCCHHHHHHHHHHH
Q 028353 127 GNKVDKESERVVTKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 127 ~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
+||.|++..+....+ .+..... +.-|++.+||.++.|++++++.|.+.
T Consensus 174 VNKaD~~gA~~~~~~-l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 174 VNKADRPGADRTVRD-LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp EE--SHHHHHHHHHH-HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHH-HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 999996433332222 2222211 12479999999999999999988773
No 313
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=3.3e-10 Score=94.07 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-EEEEEECCeEEEEEEEeCCCccccc-------cc---h
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-VKYVDVGGKKLKLAIWDTAGQERFR-------TL---T 79 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-------~~---~ 79 (210)
+..++|+++|.+|+||||++|.|++........ ..+++.. ......+ ...+.++||||..... .. .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHH
Confidence 566899999999999999999999876433332 1222221 2222233 3568999999955421 11 1
Q ss_pred hhccc--CccEEEEEEECCCcccHHHHHHHHHHHHh-hhccCCCCcEEEEEeCCCCCC
Q 028353 80 SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEID-LYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 80 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
..++. ..|++++|..++.......-.. ++..+. .+....-..+|||.|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11223 4799999998764333211112 222222 222222346789999999754
No 314
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.15 E-value=5e-10 Score=84.39 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=94.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC-----C------CCCCCC-Cce---------------eeeEEEEEEE-------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD-----N------FEELSP-TIG---------------VDFKVKYVDV------- 57 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~-----~------~~~~~~-~~~---------------~~~~~~~~~~------- 57 (210)
.+...|.|.|.||+|||||+..|... . ..+.++ +.| ...+..++..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 45678999999999999999887421 0 011112 111 1122222221
Q ss_pred -----------CCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028353 58 -----------GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126 (210)
Q Consensus 58 -----------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv 126 (210)
+...+.+.|++|.|.-+... ....-+|.+++|.-..-.+..+.++. -..++.. ++|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~-GimEiaD---------i~v 195 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA-GIMEIAD---------IIV 195 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh-hhhhhhh---------eee
Confidence 22245788889988544332 23345899999999888887777665 3333433 799
Q ss_pred EeCCCCCCCceecHHH--HHHHH----H--HhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 127 GNKVDKESERVVTKKE--GINFA----R--EYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 127 ~nK~Dl~~~~~~~~~~--~~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
+||.|....+....+. +.++. . .+.-+++.+||.+|.|++++++.+.+..
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 9999965443222111 11111 1 1234699999999999999999998755
No 315
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.14 E-value=6.6e-10 Score=78.83 Aligned_cols=149 Identities=18% Similarity=0.074 Sum_probs=86.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-------------EEEEEE----------------------
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-------------VKYVDV---------------------- 57 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~-------------~~~~~~---------------------- 57 (210)
.++|.|.|++|||||+|+.+++..--..+.. ...-+.+ ...+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999876321111000 0000000 000000
Q ss_pred CCeEEEEEEEeCCCccccccchhhcccCcc-EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 58 GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
......+.|++..|+ --. ...+.-.| .-|+|+|.+..+-...- - ++.-. ..=++|+||.|+...-
T Consensus 93 ~~~~~Dll~iEs~GN-L~~---~~sp~L~d~~~v~VidvteGe~~P~K---~------gP~i~-~aDllVInK~DLa~~v 158 (202)
T COG0378 93 DFPDLDLLFIESVGN-LVC---PFSPDLGDHLRVVVIDVTEGEDIPRK---G------GPGIF-KADLLVINKTDLAPYV 158 (202)
T ss_pred cCCcCCEEEEecCcc-eec---ccCcchhhceEEEEEECCCCCCCccc---C------CCcee-EeeEEEEehHHhHHHh
Confidence 111134556666661 111 11122234 77888888876532211 0 00001 1348999999997766
Q ss_pred eecHHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 137 VVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
..+.+...+-++.. +.+++++|+++|.|++++++|+....
T Consensus 159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 66656555556655 47899999999999999999987654
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.2e-09 Score=84.98 Aligned_cols=84 Identities=26% Similarity=0.250 Sum_probs=57.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEE----------C----CeEEEEEEEeCCCcc---
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDV----------G----GKKLKLAIWDTAGQE--- 73 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~----------~----~~~~~~~l~D~~g~~--- 73 (210)
.+++.|+|.|++|||||.+.++..... .+|| |...+.....+.. . .....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987742 4566 4444443333221 1 123568899999832
Q ss_pred ----ccccchhhcccCccEEEEEEECCC
Q 028353 74 ----RFRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 74 ----~~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
.+......-++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 233334445789999999999773
No 317
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=1.5e-10 Score=83.84 Aligned_cols=168 Identities=22% Similarity=0.338 Sum_probs=95.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcccccc-----chhhcccCc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRT-----LTSSYYRGA 86 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~ 86 (210)
..-||+++|.+|+|||++---+..+.........|.++...-.++. -+..-+.+||.+|++.+-. .....++++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3568999999999999986666544322222223332222211111 1235689999999874322 345678999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC--ceecHHH----HHHHHHHhCCeEEEEcc
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE--RVVTKKE----GINFAREYGCLFIECSA 159 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~~~Sa 159 (210)
+++++|||++..+-..++.. +..-++.. ...+...+....+|+|+... +....++ .+.+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998765555443 33322221 23456677888899999432 2222222 23333333455777765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCc
Q 028353 160 KTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
-+. .+-..|..+...+..+.+.
T Consensus 162 wDe-tl~KAWS~iv~~lipn~~~ 183 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYNLIPNVSA 183 (295)
T ss_pred hhH-HHHHHHHHHHHhhCCChHH
Confidence 432 2333345555444444443
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.11 E-value=1.4e-09 Score=81.23 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=43.5
Q ss_pred EEEEEEeCCCcccc-------------ccchhhccc-CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028353 62 LKLAIWDTAGQERF-------------RTLTSSYYR-GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127 (210)
Q Consensus 62 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (210)
..++++|+||.... ..+...+++ ..+++++|+|+.....-..... +...+. ..+.++++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence 46889999996421 123344556 4568999999876543333222 333333 3568999999
Q ss_pred eCCCCCCC
Q 028353 128 NKVDKESE 135 (210)
Q Consensus 128 nK~Dl~~~ 135 (210)
||.|..++
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998643
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.1e-09 Score=90.19 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=86.2
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC----------------CceeeeEEEEE-----EECCeEEEEEEE
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP----------------TIGVDFKVKYV-----DVGGKKLKLAIW 67 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~-----~~~~~~~~~~l~ 67 (210)
.......+|.++|+-+.|||+|+.-|.....+..+. .-+..+..... ...+..+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 345678899999999999999999997654332211 11222222222 225667889999
Q ss_pred eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
|||||..+.....+.++.+|++++|+|+...-.++.-+- +.. +-....|+++|+||.|+
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikh-----aiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKH-----AIQNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHH-----HHhccCcEEEEEehhHH
Confidence 999999999888899999999999999999877654432 222 22456899999999996
No 320
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-08 Score=75.35 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=91.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG 85 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~ 85 (210)
-..||+++|.|.+|||||+..++.-... ......++.......+....-.+++.|+||.-+-. .......+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 3479999999999999999999865432 11222333444444555556678889999943222 233456678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
+|.+++|.|++..+.--.+.+.-+..+....++....+.+--.|.... .--......+..+..++.+.-.++=.
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999998776555544345555554544444433333333221 11223444555555555544333334
Q ss_pred CCCCCHHHHHHH
Q 028353 160 KTRVNVQQCFEE 171 (210)
Q Consensus 160 ~~~~~i~~~~~~ 171 (210)
++...++++.+.
T Consensus 220 ReD~t~DdfIDv 231 (364)
T KOG1486|consen 220 REDCTVDDFIDV 231 (364)
T ss_pred ecCCChHHHHHH
Confidence 444455554443
No 321
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=6.8e-10 Score=81.08 Aligned_cols=172 Identities=18% Similarity=0.204 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQGIIM 91 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~~i~ 91 (210)
-+|+++|...|||||+.+.+.....+...-..+.+.....-.+.+.-+.+.+||+||+-.+-. -....++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 569999999999999998888766554433333333333334444557799999999765432 23456889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-eecHH-----HHHHHHHHhC-----CeEEEEccC
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-VVTKK-----EGINFAREYG-----CLFIECSAK 160 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~~~~~-----~~~~~~Sa~ 160 (210)
|+|+.+. ..+.+.......-+.+.-++++.+=|.+.|.|..... .+..+ ....-....| +.++-+| .
T Consensus 108 vIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-I 185 (347)
T KOG3887|consen 108 VIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-I 185 (347)
T ss_pred EEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-e
Confidence 9998864 3444444233333445567888989999999974321 12111 1111122222 2344444 4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCccccccc
Q 028353 161 TRVNVQQCFEELVLKILDTPSLLAEGSK 188 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 188 (210)
-...|-+.|..+++.+..+-+.++....
T Consensus 186 yDHSIfEAFSkvVQkLipqLptLEnlLn 213 (347)
T KOG3887|consen 186 YDHSIFEAFSKVVQKLIPQLPTLENLLN 213 (347)
T ss_pred cchHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 4556889999999999877776655433
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.4e-09 Score=80.40 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=102.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC----------CC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD----------NF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
..-+||..+|+.+-|||||-..++.- .| .+.....+.++....+.++..+..+..+|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 34589999999999999998877521 11 1111244555555555555555667778999999988
Q ss_pred cchhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHH
Q 028353 77 TLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFARE 149 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~ 149 (210)
.....-..++|+.|+|+++++.. +-+.+ + ..+ .-++| ++++.||+|+.+... +-..+++++...
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHi---L--lar----qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHI---L--LAR----QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhh---h--hhh----hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 87777788899999999999853 33333 1 112 23454 567779999976433 234567788888
Q ss_pred hCCe-----EEEEccCCCC--------CHHHHHHHHHHHHHcCC
Q 028353 150 YGCL-----FIECSAKTRV--------NVQQCFEELVLKILDTP 180 (210)
Q Consensus 150 ~~~~-----~~~~Sa~~~~--------~i~~~~~~l~~~~~~~~ 180 (210)
++++ ++.-||...- .|.++++.+-..+....
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 8764 6666654321 14555555555543333
No 323
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.03 E-value=7.2e-10 Score=76.68 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=44.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+++++|.+|+|||||+|++++..........+.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999888766555666666666666654 4799999995
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=2.2e-09 Score=78.02 Aligned_cols=96 Identities=20% Similarity=0.099 Sum_probs=66.6
Q ss_pred cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HH
Q 028353 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----RE 149 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~ 149 (210)
+...+..+++++|++++|+|+.+.... |...+.. ...++|+++|+||+|+..... ..+....+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence 466778889999999999999886421 2222211 134689999999999864332 233333333 22
Q ss_pred hCC---eEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 150 YGC---LFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 150 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.+. +++++||+++.|+++++.++.+.+...
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~ 127 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAKKG 127 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 333 589999999999999999999887543
No 325
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.01 E-value=9.8e-10 Score=78.36 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=47.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
...++++++|.||+|||||+|+|.+.......+.+++|.....+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 345899999999999999999999988777777788887766666543 478999998
No 326
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.99 E-value=8.8e-09 Score=83.03 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=79.9
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
....+.++|.+|+...+..|..++.+++++|+|+++++- ..+......|...+.. ....+.|++|+.||
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~-~~~~~~~iil~lnK 312 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN-PWFKNTPIILFLNK 312 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS-GGGTTSEEEEEEE-
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC-cccccCceEEeeec
Confidence 345678999999999999999999999999999998752 2244445534443333 44558999999999
Q ss_pred CCCC------CC-----------c-eecHHHHHHHHHHh------------CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 130 VDKE------SE-----------R-VVTKKEGINFAREY------------GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 130 ~Dl~------~~-----------~-~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
.|+- .. . .-..+.+..+.... .+.+..++|.+..++..+|+.+.+.+
T Consensus 313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9971 11 1 12344455544322 12467889999999999999887754
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.99 E-value=2.4e-09 Score=81.68 Aligned_cols=55 Identities=25% Similarity=0.148 Sum_probs=40.6
Q ss_pred CcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHH
Q 028353 121 CIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 121 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
.+-++|+||+|+........+......+.. ..+++++|++++.|++++.+||...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 466999999999653333333444444443 5779999999999999999999874
No 328
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.7e-09 Score=76.19 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=44.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
..++|+++|.||+|||||+|+|.+.......+.++.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999887766777777776655555433 267889998
No 329
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.97 E-value=6.4e-09 Score=76.83 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhcccCcc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------RTLTSSYYRGAQ 87 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d 87 (210)
.+|.++|.|.+||||++..+.+. ++++...-+++............-++.+.|+||.-+- .....+..+.|+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~-~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGT-FSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCC-CCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 48999999999999999999854 4444443444444444444445667888999993221 123445678899
Q ss_pred EEEEEEECCCcccHHHHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSD 106 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~ 106 (210)
.+++|.|+-.+-+...+.+
T Consensus 139 li~~vld~~kp~~hk~~ie 157 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIE 157 (358)
T ss_pred EEEEEeeccCcccHHHHHH
Confidence 9999999988766665544
No 330
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.97 E-value=6.6e-10 Score=84.41 Aligned_cols=155 Identities=16% Similarity=0.112 Sum_probs=93.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-ccc-c------h
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRT-L------T 79 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~-~------~ 79 (210)
....--|.++|..|+||||||+.|+.... +...- |...+......+ . +-.+.+.||.|.-. ... + .
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp--s-g~~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP--S-GNFVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC--C-CcEEEEeechhhhhhCcHHHHHHHHHH
Confidence 34456789999999999999999994432 22222 333333333222 2 22356679998321 111 1 1
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCC----cEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEE
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC----IKLLVGNKVDKESERVVTKKEGINFAREYGCLFI 155 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
...+..+|.++-|.|+++|........ .+..+.... -++. .++=|-||.|......... +.+ .+
T Consensus 252 LeeVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~ig-v~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v 319 (410)
T KOG0410|consen 252 LEEVAEADLLLHVVDISHPNAEEQRET-VLHVLNQIG-VPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DV 319 (410)
T ss_pred HHHHhhcceEEEEeecCCccHHHHHHH-HHHHHHhcC-CCcHHHHhHHHhhccccccccccCccc--------cCC--cc
Confidence 123467899999999999987665555 444443321 1122 2344558888643322111 112 57
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 156 ECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.+||++|+|++++.+.+-..+....
T Consensus 320 ~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred ccccccCccHHHHHHHHHHHhhhhh
Confidence 8999999999999999888776544
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.96 E-value=1.2e-09 Score=83.14 Aligned_cols=79 Identities=23% Similarity=0.163 Sum_probs=49.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCe---------------EEEEEEEeCCCccccc---
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGK---------------KLKLAIWDTAGQERFR--- 76 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~l~D~~g~~~~~--- 76 (210)
|+++|.|+||||||+|+|++... .....+++|.. .-.+.+.+. ...+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57999999999999999998765 22222222211 112222222 2358999999943211
Q ss_pred -c---chhhcccCccEEEEEEECC
Q 028353 77 -T---LTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 77 -~---~~~~~~~~~d~~i~v~d~~ 96 (210)
. .....++.+|++++|+|+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1223467899999999974
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=98.96 E-value=5e-09 Score=81.33 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=66.1
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
+..++++|++++|+|+.++.+.......|+..+. ..++|+++|+||+|+..... ..+.........+.+++++||
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA 149 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSA 149 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeC
Confidence 3346899999999999988776665444665554 35689999999999953221 222334455567889999999
Q ss_pred CCCCCHHHHHHHHH
Q 028353 160 KTRVNVQQCFEELV 173 (210)
Q Consensus 160 ~~~~~i~~~~~~l~ 173 (210)
+++.|+++++..+.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999988764
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.95 E-value=2.3e-09 Score=75.40 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=64.5
Q ss_pred cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEE
Q 028353 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE 156 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
.++...++++|++++|+|++++...... . +...+. ..++|+++|+||+|+...... +....+....+.+++.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 4456677789999999999876543321 1 222222 346899999999998533211 1111233345678999
Q ss_pred EccCCCCCHHHHHHHHHHHHHc
Q 028353 157 CSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+||+++.|++++++.+.+.+..
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999887753
No 334
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=8.8e-09 Score=79.71 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=79.6
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEE------CCeE-----------------
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDV------GGKK----------------- 61 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~------~~~~----------------- 61 (210)
........--|+++|+-..||||||+.|+..+|+.... .+.+.+....+.- +|..
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 33455566779999999999999999999999875544 3333333333321 1111
Q ss_pred ----------------EEEEEEeCCCcc-----------ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhh
Q 028353 62 ----------------LKLAIWDTAGQE-----------RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL 114 (210)
Q Consensus 62 ----------------~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 114 (210)
-.++++||||.- .+.....-++..+|.++++||+..-+--.+... .+..++
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi~aLk- 208 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VIDALK- 208 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HHHHhh-
Confidence 168899999931 233345557789999999999876543333322 222222
Q ss_pred hccCCCCcEEEEEeCCCCCCCce
Q 028353 115 YSTNQDCIKLLVGNKVDKESERV 137 (210)
Q Consensus 115 ~~~~~~~p~ivv~nK~Dl~~~~~ 137 (210)
...--+-||.||.|..+...
T Consensus 209 ---G~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 209 ---GHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ---CCcceeEEEeccccccCHHH
Confidence 22234568899999865543
No 335
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.7e-08 Score=75.79 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=91.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC--------CC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--------SP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER------- 74 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 74 (210)
.-.|++.++|++|.|||||||.|+...+... .+ +.........+.-++..+.++++||||...
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3459999999999999999999987754332 11 223333333333467788999999999211
Q ss_pred -----------ccc-------chhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 75 -----------FRT-------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 -----------~~~-------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
++. ..+..+. .+++++|.+..+... +..+.-.+...+ ...+.+|-|+.|.|...
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-----SKKVNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-----hccccccceeeccccCC
Confidence 110 1111122 678999999876532 222211122222 34567788888999854
Q ss_pred Ccee--cHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 135 ERVV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
...+ ....+.+....+++++|....-.. +.-+....+.+.
T Consensus 173 ~~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~ 214 (366)
T KOG2655|consen 173 KDELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLK 214 (366)
T ss_pred HHHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHh
Confidence 3322 344556666677888776665544 333444444443
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=98.90 E-value=1.1e-08 Score=80.69 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=64.9
Q ss_pred chhhcccCccEEEEEEECCCcccHH-HHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFT-NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE 156 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+.+..++++|.+++|+|+.++.... .+.. |+..+. ..++|+++|+||+|+...... +.........+.+++.
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLF 154 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEE
Confidence 3445588999999999999876333 3333 554442 357899999999999643221 2223333567889999
Q ss_pred EccCCCCCHHHHHHHHHHH
Q 028353 157 CSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~ 175 (210)
+||+++.|++++++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999888653
No 337
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.90 E-value=3.3e-08 Score=76.62 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=83.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---c
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---T 77 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~ 77 (210)
...++|+++|+.|+|||||+|.|++...... .++.....+...+.-++....++++||||....- .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5679999999999999999999997633221 1233333444444447778899999999921110 0
Q ss_pred chhh-----------------------cc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 78 LTSS-----------------------YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 78 ~~~~-----------------------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
.|.. .+ ..+++++|.+..+... +..+.-..+..+ ...+.+|-|+.|.|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~l-----s~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRL-----SKRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHH-----hcccCeeeeeecccc
Confidence 1110 01 2468999998876532 222211122222 234677888899998
Q ss_pred CCCce--ecHHHHHHHHHHhCCeEEE
Q 028353 133 ESERV--VTKKEGINFAREYGCLFIE 156 (210)
Q Consensus 133 ~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (210)
-.... .-.+.+.+....+++++|.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 43322 2344566666677888774
No 338
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.90 E-value=1.3e-08 Score=78.57 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=66.7
Q ss_pred hhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028353 79 TSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.+..+.++|.+++|+|+.++. ++..+.. |+..+.. .++|+++|+||+|+.... .......+....+.+++.+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~v 144 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAV 144 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEE
Confidence 345688999999999999987 7777666 6665543 468999999999996442 1112233344568899999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028353 158 SAKTRVNVQQCFEELVL 174 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~ 174 (210)
||+++.|+++++.++..
T Consensus 145 SA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 145 SAKTGEGLDELREYLKG 161 (287)
T ss_pred ECCCCccHHHHHhhhcc
Confidence 99999999998887764
No 339
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2e-09 Score=81.23 Aligned_cols=188 Identities=14% Similarity=0.136 Sum_probs=115.3
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEEE-E---------------------------
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKY-V--------------------------- 55 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~-~--------------------------- 55 (210)
.+...++|.-+|+..-||||+++.+.+-....... |....+.... +
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 34567999999999999999999885432100000 0000000000 0
Q ss_pred --EECC---eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 56 --DVGG---KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 56 --~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
...+ --..+.++|+||++-.-+....-..-.|++++++..+.........+ .+..++.. .-..++++-||.
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsE-HLaaveiM---~LkhiiilQNKi 189 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSE-HLAAVEIM---KLKHIIILQNKI 189 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhh-HHHHHHHh---hhceEEEEechh
Confidence 0000 01246788999998766655555556788888888775432222222 22223221 124578999999
Q ss_pred CCCCCce--ecHHHHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCc
Q 028353 131 DKESERV--VTKKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPE 201 (210)
Q Consensus 131 Dl~~~~~--~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
|+..++. ...+++..|.... +.|++++||.-..|++-+.+++...+.-..+.+.......--..|...++.
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG 265 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPG 265 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCC
Confidence 9965443 3455666666644 678999999999999999999999997777777665554444445544443
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.85 E-value=3.2e-08 Score=78.11 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=67.2
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCeEEEEccC
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
+..++|.+++|++.....++..+.. |+..+. ..++|.++|+||+|+..... .............+.+++++||+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4578999999999988888888777 655443 35689999999999964321 11223334445678899999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVLK 175 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (210)
++.|+++++.++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988753
No 341
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.84 E-value=1.5e-08 Score=78.40 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=48.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
...++++++|.||+|||||+|+|.+.........++.|.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 456899999999999999999999887766777778777766666543 47899999963
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.84 E-value=1e-08 Score=73.34 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=45.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
...++++++|.+|+|||||++++.+..+.......+++.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34579999999999999999999988775555566666666656554 34789999994
No 343
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=1.2e-08 Score=78.46 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=46.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
...++++++|.||+|||||+|+|.+.........++.|.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 356899999999999999999999887766666777777666666543 4789999996
No 344
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.83 E-value=1.4e-08 Score=71.47 Aligned_cols=56 Identities=27% Similarity=0.337 Sum_probs=42.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
...+++++|.+++|||||++++.+.......++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 46789999999999999999999776555566667665544333333 588999998
No 345
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=80.11 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=51.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
..++++|+|.|++|||||||+|.+.....+.+.+|.|.....+.++.. +.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 348899999999999999999999988788888899999888887775 8899999953
No 346
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.7e-07 Score=68.69 Aligned_cols=146 Identities=19% Similarity=0.215 Sum_probs=83.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------CCC-CceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE---------LSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQER------- 74 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 74 (210)
.-.|+|.++|.+|.|||||+|.|+...... ..+ |.........+.-.+.+.+++++||||...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 456999999999999999999997543211 111 333333333344467778899999999211
Q ss_pred -----------cccch--------hhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 75 -----------FRTLT--------SSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 75 -----------~~~~~--------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
+.... ...+ ..+++++|.+..+-.. +-.+.-.++..+.. -+.+|-|+-|.|-.
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~-----vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE-----VVNVVPVIAKADTL 197 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh-----hheeeeeEeecccc
Confidence 11111 1111 2467888888776432 22221112222221 24566677798852
Q ss_pred --CCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 134 --SERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
+++..-.+.++.-...+++.+++--+-+..
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 233334455666667778887776555444
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-07 Score=78.99 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=84.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE----------------------------------------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK---------------------------------------- 51 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 51 (210)
+...||+|.|..++||||++|+++..+.-+....+.+...
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4568999999999999999999975543221111111111
Q ss_pred ----EEEEEECCeE-----EEEEEEeCCCcc---ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCC
Q 028353 52 ----VKYVDVGGKK-----LKLAIWDTAGQE---RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119 (210)
Q Consensus 52 ----~~~~~~~~~~-----~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 119 (210)
...+..+... -.+.++|.||.. ...+-...+...+|++|+|.++.+..+..... ++..... .
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~--Ff~~vs~----~ 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ--FFHKVSE----E 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH--HHHHhhc----c
Confidence 0001111110 146788999943 33344455677899999999988765443332 3333322 2
Q ss_pred CCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------eEEEEccCC
Q 028353 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGC--------LFIECSAKT 161 (210)
Q Consensus 120 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~ 161 (210)
...+.|+.||.|....+....+++.....++++ .++++|++.
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 345556668889866655555665555444432 278899764
No 348
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.73 E-value=2.3e-08 Score=72.66 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=42.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC--------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNF--------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
..+++++|.+|+|||||+|+|.+... ...+..+++|.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 35899999999999999999997542 23334567777777776654 478999998
No 349
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=9.7e-08 Score=76.07 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=67.3
Q ss_pred ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHH
Q 028353 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFA 147 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~ 147 (210)
.+.+..+...+...++++++|+|+.+.... |...+..+. .+.|+++|+||+|+.... ...+.+. +++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHH
Confidence 345666777778899999999999775421 334444332 257999999999985432 2233333 345
Q ss_pred HHhCC---eEEEEccCCCCCHHHHHHHHHHH
Q 028353 148 REYGC---LFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 148 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
...++ .++.+||+++.|+++++..+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 56666 38999999999999999999765
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.70 E-value=4.2e-08 Score=68.93 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=42.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
....+++++|.+|+|||||+|.+.+..........+++.....+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 35688999999999999999999987654444445555554544443 3478899998
No 351
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.68 E-value=2.1e-08 Score=73.02 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=87.6
Q ss_pred EEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcE
Q 028353 54 YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIK 123 (210)
Q Consensus 54 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ 123 (210)
.++++-....+.+.|.+|+..-...|...+.++-.+++++.++. ....+.... +...+-.++...+.++
T Consensus 191 eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssV 269 (359)
T KOG0085|consen 191 EYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSV 269 (359)
T ss_pred ecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCce
Confidence 33445556678899999999989999999999888877766553 344555555 5555666777889999
Q ss_pred EEEEeCCCCCCCc----------------eecHHHHHHHHHHh----C-----C-eEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 124 LLVGNKVDKESER----------------VVTKKEGINFAREY----G-----C-LFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 124 ivv~nK~Dl~~~~----------------~~~~~~~~~~~~~~----~-----~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
|+..||.|+.+.. .-+.+.++++..++ + + .-..+.|.+..||.-+|..+.+.++
T Consensus 270 IlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiL 349 (359)
T KOG0085|consen 270 ILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 349 (359)
T ss_pred EEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHH
Confidence 9999999985332 12233344444333 2 1 1355778888999999999998887
Q ss_pred cC
Q 028353 178 DT 179 (210)
Q Consensus 178 ~~ 179 (210)
+.
T Consensus 350 q~ 351 (359)
T KOG0085|consen 350 QL 351 (359)
T ss_pred Hh
Confidence 54
No 352
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.7e-07 Score=72.86 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=95.6
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------CC------------CCceeeeEEEEEEE-------
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------LS------------PTIGVDFKVKYVDV------- 57 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~------------~~------------~~~~~~~~~~~~~~------- 57 (210)
.+.-..+|++++|...+|||||+-.|+.+.... .. ...+.+.....+.+
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 344567999999999999999998876442111 00 01111111111111
Q ss_pred ---CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 58 ---GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 58 ---~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
+....-++++|++|+..|.......+. ..+..++|+++.....+-.-+ .+-.+. .-++|++|+++|+|+
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE--HLgl~~----AL~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE--HLGLIA----ALNIPFFVLVTKMDL 315 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH--HHHHHH----HhCCCeEEEEEeecc
Confidence 112245789999999998876655554 358888999988765443222 233333 346899999999999
Q ss_pred CCCc------------------------eecHHHHHHHHHHh----CCeEEEEccCCCCCHHHHH
Q 028353 133 ESER------------------------VVTKKEGINFAREY----GCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 133 ~~~~------------------------~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~ 169 (210)
.+.. .-...++...+.+. -+|+|.+|+.+|+|++-+.
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 6441 11223333333333 2579999999999987643
No 353
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.8e-08 Score=79.18 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=107.7
Q ss_pred ccccccceeeEEEEEcCCCCcHHHHHHHHhcCC-----------------CCCCCCCceeeeEEEEEEECCeEEEEEEEe
Q 028353 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-----------------FEELSPTIGVDFKVKYVDVGGKKLKLAIWD 68 (210)
Q Consensus 6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 68 (210)
.....+.+.-+|.++.+-.+||||.-.|++.-. |......-|.++...-+.++.+..+++++|
T Consensus 29 ~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlid 108 (753)
T KOG0464|consen 29 IINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLID 108 (753)
T ss_pred CCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence 344556677899999999999999999886321 111111346677777788899999999999
Q ss_pred CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q 028353 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR 148 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 148 (210)
|||+..+.-.....++--|+++.|+|++..-.-+.+.- |.. ..+.++|.....||+|.....- ...+..+-.
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltv-wrq-----adk~~ip~~~finkmdk~~anf--e~avdsi~e 180 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQ-----ADKFKIPAHCFINKMDKLAANF--ENAVDSIEE 180 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehh-----ccccCCchhhhhhhhhhhhhhh--hhHHHHHHH
Confidence 99999999888888888999999999998765555544 643 4456789999999999743321 122344445
Q ss_pred HhCCe--EEEEccCCCCCHHH
Q 028353 149 EYGCL--FIECSAKTRVNVQQ 167 (210)
Q Consensus 149 ~~~~~--~~~~Sa~~~~~i~~ 167 (210)
++++. .+.+..-+..|...
T Consensus 181 kl~ak~l~l~lpi~eak~fnk 201 (753)
T KOG0464|consen 181 KLGAKALKLQLPIGEAKGFNK 201 (753)
T ss_pred HhCCceEEEEecccccccccc
Confidence 66665 23333334445533
No 354
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.64 E-value=9.7e-07 Score=70.07 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=90.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC-----------------CCCCCCC--Cc---eeee---EEEEEEE-CCeEEEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD-----------------NFEELSP--TI---GVDF---KVKYVDV-GGKKLKLAI 66 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~-----------------~~~~~~~--~~---~~~~---~~~~~~~-~~~~~~~~l 66 (210)
-.+=|.++||..+||||||+||... ..++... +. ..-| ....+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 3466899999999999999998421 2222222 11 1101 1223333 567899999
Q ss_pred EeCCCc-------------cccc-cchhh---------------ccc--CccEEEEEEECC----CcccHHHHHHHHHHH
Q 028353 67 WDTAGQ-------------ERFR-TLTSS---------------YYR--GAQGIIMVYDVT----RRDTFTNLSDVWAKE 111 (210)
Q Consensus 67 ~D~~g~-------------~~~~-~~~~~---------------~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~~ 111 (210)
+|+.|- +.+- .-|.. .++ ..=++|+.-|-+ .++.+....+.....
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999871 0000 01111 111 112666666644 234555555545555
Q ss_pred HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC--CCHHHHHHHHH
Q 028353 112 IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR--VNVQQCFEELV 173 (210)
Q Consensus 112 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~l~ 173 (210)
++ ..++|++|+.|-.+-. .....+.+.++..+++++++++++..- .+|..++..++
T Consensus 176 Lk----~igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 176 LK----EIGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HH----HhCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 54 4678999999988743 334555677888889999888887643 34555444444
No 355
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.63 E-value=8.1e-07 Score=66.20 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=56.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCC----CceeeeEEEEEEECCeEEEEEEEeCCCcccccc------ch
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELSP----TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LT 79 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~ 79 (210)
....-|.|+|++++|||+|+|.|++. .|.-... |.|...+...... +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 45677899999999999999999988 5532222 3333333222211 2356799999999543322 22
Q ss_pred hhcccC--ccEEEEEEECCCcccHH
Q 028353 80 SSYYRG--AQGIIMVYDVTRRDTFT 102 (210)
Q Consensus 80 ~~~~~~--~d~~i~v~d~~~~~s~~ 102 (210)
...+.. ++++|+..+........
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~ 108 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDL 108 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHH
Confidence 333344 78888888876554433
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.62 E-value=3.9e-06 Score=58.04 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=78.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCC-Cc------------------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA-GQ------------------ 72 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~------------------ 72 (210)
...+||++.|+|||||||++.++...--...+...| +....+.-++...-+.+.|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 356899999999999999998876322111122222 334444456666667777766 31
Q ss_pred ---cccc----cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH
Q 028353 73 ---ERFR----TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145 (210)
Q Consensus 73 ---~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 145 (210)
+.+. ......+..+|++| +|---+..+ ....+...+.. ..+.+.|++.+..+.+. ++ ..+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl--ks~~f~~~ve~-vl~~~kpliatlHrrsr-~P-------~v~ 147 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL--KSKKFREAVEE-VLKSGKPLIATLHRRSR-HP-------LVQ 147 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh--ccHHHHHHHHH-HhcCCCcEEEEEecccC-Ch-------HHH
Confidence 0111 11122234456554 443222222 11125555554 33567888888887764 22 122
Q ss_pred HHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 146 FAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 146 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
-..+.+.-++. .+..|=+.++..++..+
T Consensus 148 ~ik~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 148 RIKKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred HhhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 23333443333 45555557888877766
No 357
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.62 E-value=5.5e-08 Score=72.68 Aligned_cols=157 Identities=17% Similarity=0.066 Sum_probs=90.6
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCc----------cccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------ERFR 76 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~ 76 (210)
.+.+...+++++|.+++|||+|++.++..+-.. ..+..+.+.....+.+ .-.+.++|.||- .++.
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHh
Confidence 446788999999999999999999998665322 1114444443333333 335778899991 1122
Q ss_pred cchhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-----------ecHHH
Q 028353 77 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VTKKE 142 (210)
Q Consensus 77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~ 142 (210)
.+...++.+ ---+.+++|++.+-. ........++. ..++|+.+|.||+|....-. +....
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~--~~D~~~i~~~g----e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~ 281 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQ--PTDNPEIAWLG----ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQG 281 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCC--CCChHHHHHHh----hcCCCeEEeeehhhhhhhccccccCccccceeehhh
Confidence 222223322 224455666664322 11111333344 45799999999999742211 11112
Q ss_pred HHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028353 143 GINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 143 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
..+.......|++.+|+.++.|+++++-.+..
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhh
Confidence 22222233456788999999999887655543
No 358
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2e-07 Score=78.14 Aligned_cols=116 Identities=25% Similarity=0.346 Sum_probs=85.1
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCC------------C---CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------F---EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+.+.+..-+++++.+..-|||||+.+|.... | .+...+-|.|.....+..-..++.++++|+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 3455677899999999999999999986331 2 222235566666555555557889999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccH---HHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTF---TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
-.+.+......+-+|++++++|+...-.- --+++.|. .+.-.++|+||+|.
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~---------~~~~~~lvinkidr 136 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI---------EGLKPILVINKIDR 136 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH---------ccCceEEEEehhhh
Confidence 99999988888999999999998875433 23333332 22345889999994
No 359
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.58 E-value=4.1e-07 Score=64.04 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=57.9
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
..+..+|++++|+|+.++..-.. .. +...+.. ...++|+++|+||+|+...... ......+........+.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HH-HHHHHHh--ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 34678999999999998743211 11 3333332 1345899999999999543221 111222222222335789999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028353 161 TRVNVQQCFEELVLKI 176 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (210)
.+.|++++++.+.+.+
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999997764
No 360
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.58 E-value=2.7e-07 Score=72.87 Aligned_cols=81 Identities=22% Similarity=0.114 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCC--CceeeeEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF-E-ELSP--TIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQER- 74 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~-~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~- 74 (210)
+++.++|.|++|||||.+.|++... . ..++ |........ .+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v--~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV--NPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE--EechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 7899999999999999999998765 2 2334 233333222 22221 24678889999433
Q ss_pred ------cccchhhcccCccEEEEEEECCC
Q 028353 75 ------FRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
........++.+|+++.|++..+
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22234456789999999999753
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=98.58 E-value=1.2e-07 Score=74.92 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=38.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------ceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELSPT-------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
++|+|.+|||||||||+|++......... -.+|.....+.+++.. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 78999999999999999997654322221 1234445555654332 478999976654
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=4.4e-07 Score=63.75 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=55.3
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|+|+.++.+.... ++.. ......++|+++|+||+|+.....+ .+....+....+..++.+||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999987655432 2221 1122456899999999998533211 111112222334568999999999999
Q ss_pred HHHHHHHHHH
Q 028353 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
++++.+.+..
T Consensus 75 ~L~~~i~~~~ 84 (155)
T cd01849 75 KKESAFTKQT 84 (155)
T ss_pred hHHHHHHHHh
Confidence 9999987754
No 363
>PRK12289 GTPase RsgA; Reviewed
Probab=98.57 E-value=1.3e-07 Score=74.77 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=39.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCce-------eeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIG-------VDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
++|+|++|||||||||+|.+..........+ +|.....+.+.+.. .++||||...+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 7999999999999999999765443333333 45555556564432 57899997543
No 364
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.1e-06 Score=71.85 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=81.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
..++-++++||||+||||||+.|.......... ..| ....+.+...++++.++|. ...++ .....-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--HHHHH-HhHHHhhheeE
Confidence 356888999999999999999987442211111 111 0113466788999999993 22222 23345589999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceecHHH----H-HHHHHH-hCCeEEEEccCC
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVTKKE----G-INFARE-YGCLFIECSAKT 161 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~----~-~~~~~~-~~~~~~~~Sa~~ 161 (210)
+++|.+-....+.+. ++..+.. .+.| ++-|+|+.|+-....-.... . +.|..- .|+.+|.+|...
T Consensus 139 LlIdgnfGfEMETmE--FLnil~~----HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 139 LLIDGNFGFEMETME--FLNILIS----HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEeccccCceehHHH--HHHHHhh----cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999998776665554 4444443 2344 45677999984322111111 1 122222 267888888653
No 365
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.53 E-value=1.5e-07 Score=75.87 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=50.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
..+.|.+||.|||||||+||.|.+.+-..++.|+|.|.+..++.++.. +.|.|+||.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGL 369 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGL 369 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---ceecCCCCc
Confidence 369999999999999999999999999889899999999888877553 778899994
No 366
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.50 E-value=3.5e-07 Score=70.28 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=56.4
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEE---------------CCeEEEEEEEeCCCccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDV---------------GGKKLKLAIWDTAGQER 74 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~~ 74 (210)
....+++.|+|.|++|||||.|.|+.... +..+|....+...-.+.+ ......++++|++|.-.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 34678999999999999999999997765 344452222222222222 12345789999998322
Q ss_pred -------cccchhhcccCccEEEEEEECCC
Q 028353 75 -------FRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 75 -------~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
........++.+|+++-|+++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22223345788999999988654
No 367
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.48 E-value=2e-06 Score=61.12 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=65.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeC-CCc----------------------
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT-AGQ---------------------- 72 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~---------------------- 72 (210)
||++.|+||+|||||++++...--....+..| ++...+.-++.+.-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 68999999999999999987432111111222 33333334555555666665 221
Q ss_pred cccccchhhcc----cCccEEEEEEECC-CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHHHH
Q 028353 73 ERFRTLTSSYY----RGAQGIIMVYDVT-RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGINF 146 (210)
Q Consensus 73 ~~~~~~~~~~~----~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~ 146 (210)
+.+.......+ ..+| ++++|-- .-+.... . |...+.... +.++|++.++.+. +.+ .+..+
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~--~-F~~~v~~~l-~s~~~vi~vv~~~~~~~--------~l~~i 144 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELKSP--G-FREAVEKLL-DSNKPVIGVVHKRSDNP--------FLEEI 144 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC-C--H-HHHHHHHHH-CTTSEEEEE--SS--SC--------CHHHH
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcCH--H-HHHHHHHHH-cCCCcEEEEEecCCCcH--------HHHHH
Confidence 11111111112 2344 7777722 2111111 1 444444333 3678888877776 432 24555
Q ss_pred HHHhCCeEEEEccCCCCCH
Q 028353 147 AREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i 165 (210)
....++.+++++..+.+.+
T Consensus 145 ~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 145 KRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp HTTTTSEEEE--TTTCCCH
T ss_pred HhCCCcEEEEeChhHHhhH
Confidence 6666788998887776654
No 368
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.48 E-value=2.4e-06 Score=66.85 Aligned_cols=164 Identities=14% Similarity=0.101 Sum_probs=97.3
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----------C-----CceeeeEEEEEEECCe-------------
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS----------P-----TIGVDFKVKYVDVGGK------------- 60 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~------------- 60 (210)
++....+.|.+.|+.+.|||||+-.|..+...+-. + ..........+.+++.
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 34556789999999999999999888654321111 0 0111112222222221
Q ss_pred --------EEEEEEEeCCCccccccch-hhc-ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 61 --------KLKLAIWDTAGQERFRTLT-SSY-YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 --------~~~~~l~D~~g~~~~~~~~-~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
+.-+.|+|+.|++.+-... +.. =.+.|-.++++.+++.-+--.-.. +-.. ...+.|++|+.||+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--Lgi~----~a~~lPviVvvTK~ 265 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--LGIA----LAMELPVIVVVTKI 265 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--hhhh----hhhcCCEEEEEEec
Confidence 2357788999999876533 333 357899999999998765433222 1111 13468999999999
Q ss_pred CCCCCceec--HHHHHHHH----------------------HHhC---CeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 131 DKESERVVT--KKEGINFA----------------------REYG---CLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 131 Dl~~~~~~~--~~~~~~~~----------------------~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|+.....+. .+++..+. -+.+ +|+|.+|+.+|+|++-+ +.+...+.++
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~Lp~r 340 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLLPKR 340 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhCCcc
Confidence 996443221 11111111 1112 57999999999998764 4444444433
No 369
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.46 E-value=5.1e-07 Score=67.08 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=73.7
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc-------ccHHHHH-------HHHHHHHhhhccCCCCcEEE
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR-------DTFTNLS-------DVWAKEIDLYSTNQDCIKLL 125 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~-------~~~~~~~~~~~~~~~~p~iv 125 (210)
..+.++++|.+|+..-+..|...+..+.++|+|+..+.- .+-+.+. ..|.... -..+.+|+
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRw-----L~tisvIl 274 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRW-----LRTISVIL 274 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhH-----HhhhheeE
Confidence 446789999999999999999999999999999997752 1222222 2222211 23467899
Q ss_pred EEeCCCCCCC----------------------------ceecHH--HHHHHHH----Hh---------CCeEEEEccCCC
Q 028353 126 VGNKVDKESE----------------------------RVVTKK--EGINFAR----EY---------GCLFIECSAKTR 162 (210)
Q Consensus 126 v~nK~Dl~~~----------------------------~~~~~~--~~~~~~~----~~---------~~~~~~~Sa~~~ 162 (210)
..||.|+... ...+.. .++-+.+ .. -+.+..+.|.+-
T Consensus 275 FLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDT 354 (379)
T KOG0099|consen 275 FLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT 354 (379)
T ss_pred EecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeech
Confidence 9999997311 000111 1111111 11 133667888999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028353 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
++|..+|+...+.+.+
T Consensus 355 enIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 355 ENIRRVFNDCRDIIQR 370 (379)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887754
No 370
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.46 E-value=3.7e-07 Score=68.97 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
-.++|+|++|+|||||+|+|.+........ ...+|.....+.+++. .++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence 368899999999999999999764322111 1224444555555432 688999975533
No 371
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.46 E-value=2.1e-07 Score=65.10 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC------CCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF------EELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
-.++|+|++|||||||+|.|.+... +... ....+|.....+.++.. ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 4688999999999999999997632 1111 12233334445555443 3667999965443
No 372
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.3e-06 Score=65.89 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=91.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc----------CCCC-----CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS----------DNFE-----ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
.-++|.-+|+..-|||||--.++. .+|. +....-|.++....+.++......-=.|+|||..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 458999999999999999766641 1111 1111445555555455544445555669999998887
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-Cce--ecHHHHHHHHHHhCC--
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-ERV--VTKKEGINFAREYGC-- 152 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~--~~~~~~~~~~~~~~~-- 152 (210)
....-....|+.|+|+.++|..--+ .++ .+...++.. =..++|.+||.|+.+ ++. +-..+++++...+++
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQ-TrE-HlLLArQVG---V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQ-TRE-HLLLARQVG---VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcc-hHH-HHHHHHHcC---CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 7777778889999999999965322 222 222222211 135678889999973 332 234567777777764
Q ss_pred ---eEEEEccC
Q 028353 153 ---LFIECSAK 160 (210)
Q Consensus 153 ---~~~~~Sa~ 160 (210)
|++.-||.
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 57776655
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.45 E-value=2.1e-06 Score=67.19 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=55.8
Q ss_pred EEEEEEEeCCCccccccc----hhhc--------ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028353 61 KLKLAIWDTAGQERFRTL----TSSY--------YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (210)
.+.+.++||||....... ...+ -...+..++|+|++... +.+.+ ...+... . -+--+|.|
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~-~~~giIlT 267 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----V-GLTGIILT 267 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----C-CCCEEEEE
Confidence 467899999996442221 1111 12467889999999543 23322 1111111 1 23468899
Q ss_pred CCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
|.|.... .-.+..+....+.|+..++ +|.+++++
T Consensus 268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 9995422 2234556677799988888 77777665
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.42 E-value=6.9e-07 Score=61.73 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=52.9
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
...+..+|++++|+|+.++.+.... . +...+... ..++|+++|+||+|+..+.. ...........+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 3457789999999999987654421 1 33333321 24689999999999854332 22334555566778999999
Q ss_pred CCCCC
Q 028353 160 KTRVN 164 (210)
Q Consensus 160 ~~~~~ 164 (210)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98754
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=98.41 E-value=4.6e-07 Score=72.36 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=41.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.++.|+|.+|||||||+|+|.... ....+..+|+|.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 479999999999999999998543 1123446777777777776554 3689999963
No 376
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.39 E-value=1e-06 Score=62.98 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=60.7
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.....+.++|++++|+|++++...... . +...+ .++|+++|+||+|+...... ....++....+..++.+
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 445668899999999999876543221 1 21111 24689999999998533211 11222333345568999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 028353 158 SAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~ 177 (210)
||+++.|++++...+...+.
T Consensus 82 Sa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ECCCcccHHHHHHHHHHHHH
Confidence 99999999999999988763
No 377
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.39 E-value=8.2e-07 Score=70.83 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=42.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
.+++++|.+|||||||+|+|++... ...+..+++|.....+.++.. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 4899999999999999999997432 234446677776666665332 56899999543
No 378
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.39 E-value=9.1e-07 Score=69.03 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=92.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC----------------CC-C-------CceeeeE-------------EEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE----------------LS-P-------TIGVDFK-------------VKY 54 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~----------------~~-~-------~~~~~~~-------------~~~ 54 (210)
=..++|.++|...+|||||+-.|+.+.... .+ . ..+.+.. ..+
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 356899999999999999987765432110 00 0 1111110 001
Q ss_pred EEE-CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028353 55 VDV-GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128 (210)
Q Consensus 55 ~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (210)
+.+ ++...-++|+|++|++.|-.....-.. -.|..++++-++..- +-+.+- . +..-.+|+++|++
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLg-----L----ALaL~VPVfvVVT 281 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLG-----L----ALALHVPVFVVVT 281 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhh-----h----hhhhcCcEEEEEE
Confidence 111 222345789999999887754433332 347777777766532 112211 1 1234689999999
Q ss_pred CCCCCCCceecHHH--HHHHH--------------------------HHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 129 KVDKESERVVTKKE--GINFA--------------------------REYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 129 K~Dl~~~~~~~~~~--~~~~~--------------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
|+|+...+.+.... ...+. .+.-+|+|.+|..+|.|++- +..++..+.-++
T Consensus 282 KIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNlls~R~ 360 (641)
T KOG0463|consen 282 KIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLLSLRR 360 (641)
T ss_pred eeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhcCccc
Confidence 99986554433221 11111 12235789999999999875 445555554444
Q ss_pred Cccc
Q 028353 181 SLLA 184 (210)
Q Consensus 181 ~~~~ 184 (210)
+..+
T Consensus 361 ~~~E 364 (641)
T KOG0463|consen 361 QLNE 364 (641)
T ss_pred cccc
Confidence 4433
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.38 E-value=1.9e-06 Score=66.01 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCccccccchhh-------c-----ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028353 61 KLKLAIWDTAGQERFRTLTSS-------Y-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~-------~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (210)
.+.+.++||||.......... . -..+|.+++|+|++.. .+.+.. ...+... . -+--+|.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~----~-~~~g~IlT 225 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEA----V-GLTGIILT 225 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhh----C-CCCEEEEE
Confidence 467899999996553332111 1 1237999999999743 233322 2221211 1 13468899
Q ss_pred CCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
|.|.... .-.+..+....+.|+.+++ +|.+++++-
T Consensus 226 KlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9997433 2234555667789988887 677776653
No 380
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.37 E-value=2.9e-06 Score=65.29 Aligned_cols=91 Identities=18% Similarity=0.098 Sum_probs=62.0
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.....+..+|++++|+|+.++.+..... +...+ .+.|+++|.||+|+.+.... +.........+.+++.+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEE
Confidence 3455678999999999998775533221 22222 25799999999998533211 11122223346678999
Q ss_pred ccCCCCCHHHHHHHHHHHHHc
Q 028353 158 SAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
||+++.|++++.+.+.+.+.+
T Consensus 84 Sa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ECCCcccHHHHHHHHHHHHHH
Confidence 999999999999998887754
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=98.36 E-value=6.6e-07 Score=70.27 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=55.6
Q ss_pred EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.++||+|....... ...+ ....|.+++|+|+............+.. ..+ +--+|.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~-------~~~-~~giIlTKlD~~~~ 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE-------AVG-IDGVILTKVDADAK 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh-------cCC-CCEEEEeeecCCCC
Confidence 45899999996543221 1111 2257889999998765422211111211 112 24688999997532
Q ss_pred ceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 136 RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
-- .+..++...+.|+.+++ +|.+++++.
T Consensus 295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GG----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred cc----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 21 24455556789988887 688887764
No 382
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.35 E-value=1.4e-05 Score=65.35 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=57.0
Q ss_pred EEEEEEeCCCc-------------cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028353 62 LKLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128 (210)
Q Consensus 62 ~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (210)
.++.++|+||. +....+..++..+.+++|+|+--...+..-.. .-..+. .....+..-|+|.+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn---VTDLVs-q~DP~GrRTIfVLT 487 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI---VTDLVS-QMDPHGRRTIFVLT 487 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh---HHHHHH-hcCCCCCeeEEEEe
Confidence 36789999992 12233556677899999999875543332222 112222 23455677899999
Q ss_pred CCCCCCCceecHHHHHHHHHHh
Q 028353 129 KVDKESERVVTKKEGINFAREY 150 (210)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~ 150 (210)
|.|+.+.+..++..++.+....
T Consensus 488 KVDlAEknlA~PdRI~kIleGK 509 (980)
T KOG0447|consen 488 KVDLAEKNVASPSRIQQIIEGK 509 (980)
T ss_pred ecchhhhccCCHHHHHHHHhcC
Confidence 9999988888888888887644
No 383
>PRK01889 GTPase RsgA; Reviewed
Probab=98.34 E-value=3.9e-06 Score=66.84 Aligned_cols=86 Identities=10% Similarity=0.013 Sum_probs=57.4
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
.+..++|.+++|+++..+.....+.. ++..+. ..+++.+||+||+||.+......+....+ ..+.+++.+|++
T Consensus 108 ~iaANvD~vliV~s~~p~~~~~~ldr-~L~~a~----~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~ 180 (356)
T PRK01889 108 LIAANVDTVFIVCSLNHDFNLRRIER-YLALAW----ESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSAL 180 (356)
T ss_pred eEEEeCCEEEEEEecCCCCChhHHHH-HHHHHH----HcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECC
Confidence 34688999999999975444433333 444443 34677799999999964311111112222 346789999999
Q ss_pred CCCCHHHHHHHHH
Q 028353 161 TRVNVQQCFEELV 173 (210)
Q Consensus 161 ~~~~i~~~~~~l~ 173 (210)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888774
No 384
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=7.2e-07 Score=70.01 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=96.7
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCC------------------------------CCCCCCCceeeeEEEEEEEC
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------------------------FEELSPTIGVDFKVKYVDVG 58 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 58 (210)
.+....++++|+|+..+||||+-..++... .......-+.+...-...+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345677999999999999999866553210 00111122223333333444
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
...-.+++.|.||+..+......-..++|..++|+++...+ -|+.--+ -...........-...|+++||+|-+..
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ-TREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ-TREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccc-hhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 45567899999999999887777788899999999986532 2222211 1111111111223467899999996422
Q ss_pred c------eecHHHHHHHHHHhC------CeEEEEccCCCCCHHHHHH
Q 028353 136 R------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 136 ~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 170 (210)
+ ....+....+....| ..++++|..+|.++.+-..
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 111222333444333 3499999999999988664
No 385
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.2e-05 Score=59.62 Aligned_cols=156 Identities=24% Similarity=0.337 Sum_probs=93.5
Q ss_pred eEEEEEcCCCC--cHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEE--EEEEEeCCCccccccchhhcccCccEE
Q 028353 15 FKLLMIGDSGV--GKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKL--KLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 15 ~ki~i~G~~~~--GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.-++++|.+|+ ||.+|+.+|...+|..... ...++++-.. ++++.+ .+.+.-.+--.++.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 45789999998 9999999999888765444 3333343333 232221 122111111011110011122345789
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----------------------------------
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE---------------------------------- 135 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------------------------------- 135 (210)
++|||++....+..+.. |+...... .--.++-++||.|....
T Consensus 83 vmvfdlse~s~l~alqd-wl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete 158 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQD-WLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE 158 (418)
T ss_pred EEEEeccchhhhHHHHh-hccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence 99999999999998888 87654431 11234677899996311
Q ss_pred ----------ceecHHHHHHHHHHhCCeEEEEccCC------------CCCHHHHHHHHHHHH
Q 028353 136 ----------RVVTKKEGINFAREYGCLFIECSAKT------------RVNVQQCFEELVLKI 176 (210)
Q Consensus 136 ----------~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~~ 176 (210)
.........+|+.++++.+++.++.+ ..|++.+|..+...+
T Consensus 159 gssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 159 GSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred cccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 00112346788899999999998843 236777777776544
No 386
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.32 E-value=5e-06 Score=75.68 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=65.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCC-----C--CceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELS-----P--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSS 81 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~ 81 (210)
.+|+|++|+||||++.+- +..++-.. . ..+.+..+..+ +.. .-.++|++|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-FTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-ecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999887 34443211 0 12222222222 222 24588999922 12234555
Q ss_pred cc---------cCccEEEEEEECCCccc-----H----HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 82 YY---------RGAQGIIMVYDVTRRDT-----F----TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 82 ~~---------~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
++ +..||+|+++|+.+--. . ..++. .+..+.. ......|+.|+.||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~-~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELRE-QLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHH-HhCCCCCEEEEEecchhhc
Confidence 54 35799999999775321 1 12222 2333333 2355799999999999853
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.30 E-value=3.4e-06 Score=59.45 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCccccccchhh--------cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 61 KLKLAIWDTAGQERFRTLTSS--------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
.....++|++|.......... ..-..|.++.++|+..-.........+...+.. .=+||.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 456788999996544433322 233578999999976533221111223333332 12678999996
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=7.4e-06 Score=65.51 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=57.0
Q ss_pred ccCcc-EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH----HHHhCC---eE
Q 028353 83 YRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF----AREYGC---LF 154 (210)
Q Consensus 83 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~ 154 (210)
+...+ .+++|+|+.+...- |...+..+. .+.|+++|+||+|+... ....+.+..| +...++ .+
T Consensus 66 i~~~~~lIv~VVD~~D~~~s------~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v 136 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFNGS------WIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDV 136 (365)
T ss_pred hcccCcEEEEEEECccCCCc------hhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcE
Confidence 34444 89999999874421 444444432 25789999999999543 2223333333 445565 58
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 028353 155 IECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
+.+||+++.|++++++.+.+.
T Consensus 137 ~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 137 VLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999765
No 389
>PRK00098 GTPase RsgA; Reviewed
Probab=98.27 E-value=2.1e-06 Score=66.76 Aligned_cols=57 Identities=28% Similarity=0.294 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI-------GVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
..++++|++|+|||||+|.|.+.......... .+|.....+.+++. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 35889999999999999999976543222211 13333444444433 36789999754
No 390
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.25 E-value=2.4e-06 Score=66.15 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
-.++++|++|+|||||+|.|.+........ ...++.....+.+... ..++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 578999999999999999999765332211 1123444444555432 2588999986543
No 391
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.22 E-value=9.6e-06 Score=62.81 Aligned_cols=100 Identities=21% Similarity=0.144 Sum_probs=65.4
Q ss_pred CCCccc-cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028353 69 TAGQER-FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA 147 (210)
Q Consensus 69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 147 (210)
.|||-. ........+..+|++++|+|+.++.+.... . +...+ .+.|+++|.||+|+.+... .+....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~-l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~ 76 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP-M-IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYF 76 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh-h-HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHH
Confidence 456432 122345567899999999999887553321 1 21211 1579999999999853311 12222223
Q ss_pred HHhCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 148 REYGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
...+.+++.+|++++.|++++.+.+...+.+
T Consensus 77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 77 EEQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred HHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3446778999999999999999988887644
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.17 E-value=1.7e-05 Score=64.19 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCccccccch----hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 61 KLKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.+.+.|+||+|.......+ ..+ ....+-+++|+|+.-......... .+.. .-.+--+|.||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~----~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKD----SVDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHh----ccCCcEEEEECccCCC
Confidence 4678999999965443211 111 235688999999876543322222 1211 1124578899999742
Q ss_pred CceecHHHHHHHHHHhCCeEEEEc
Q 028353 135 ERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~S 158 (210)
. .-.+.......+.|+.+++
T Consensus 254 r----gG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 K----GGGALSAVAATKSPIIFIG 273 (429)
T ss_pred C----ccHHhhhHHHHCCCeEEEc
Confidence 2 1123444455566655554
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=4.6e-06 Score=63.81 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC------CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN------FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
-.+++|++|+|||||+|+|.... .+... ..-.+|.....+.+++.. .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 56788999999999999998642 22222 133445555666764332 356999976654
No 394
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=5.6e-06 Score=68.24 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=83.4
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCC-----CCC------------CCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-----EEL------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+..+.-+|.+.-+-.+||||+-++.+...- .++ ...-+.+....-....+.++.++++|||||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 335677899999999999999988763211 010 012233333333444556889999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
..+.-.....++--|+.|+|+++...-.-+...- |...- ..++|.+-.+||+|.....
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV-~rQ~~-----ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETV-WRQMK-----RYNVPRICFINKMDRMGAS 172 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHH-HHHHH-----hcCCCeEEEEehhhhcCCC
Confidence 8888777777888899999999876644333332 54332 3579999999999986553
No 395
>PRK13695 putative NTPase; Provisional
Probab=98.15 E-value=8.5e-05 Score=53.17 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=43.9
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
.+..+++ +++|--. ..+.....+...+.... ..+.|++++.++.... .....+....++.++++ +
T Consensus 93 ~l~~~~~--lllDE~~--~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~ 157 (174)
T PRK13695 93 ALEEADV--IIIDEIG--KMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---T 157 (174)
T ss_pred ccCCCCE--EEEECCC--cchhhhHHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---c
Confidence 3445666 6777311 11222222444444433 4568999988875321 12334445556667776 4
Q ss_pred CCCHHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
.+|=+++.+.+++++
T Consensus 158 ~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 158 PENRDSLPFEILNRL 172 (174)
T ss_pred chhhhhHHHHHHHHH
Confidence 455567788877765
No 396
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.14 E-value=2.5e-06 Score=66.98 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=51.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
-...+++.|+|.|++||||+||+|.......+..++|.|.....+.++. .+.|.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence 4677999999999999999999999999888888889888888777655 3788899994
No 397
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.09 E-value=0.00011 Score=57.66 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=57.4
Q ss_pred EEEEEEeCCCccccccchhhccc--------CccEEEEEEECCCcccHHH-HHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTN-LSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
+...++++.|.....+....+.. ..|++|-|+|+.+-..... ........+.. -=+|++||.|+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-------AD~ivlNK~Dl 157 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-------ADVIVLNKTDL 157 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-------CcEEEEecccC
Confidence 45667888886665444433332 3588999999887544322 22323333332 12789999999
Q ss_pred CCCceecHHHHHHHHHHh--CCeEEEEccCCCCCHHHH
Q 028353 133 ESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~ 168 (210)
..+.. .+..+...+.. .++++.++. .+.+..++
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAEL 192 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHh
Confidence 87664 34445555554 466888777 33344333
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=2.4e-05 Score=62.33 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=72.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCC--CceeeeE---------------EEEE-EE-----------CCeE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNF-E-ELSP--TIGVDFK---------------VKYV-DV-----------GGKK 61 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~-~-~~~~--~~~~~~~---------------~~~~-~~-----------~~~~ 61 (210)
..-.++|+|++|+||||++..|...-. . .... ....+.+ ...+ .. ....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345788999999999999998864311 0 0000 0000000 0000 01 1123
Q ss_pred EEEEEEeCCCccccccchh---hcc---cCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCC-CCcEEEEEeCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTS---SYY---RGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQ-DCIKLLVGNKVDKE 133 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~---~~~---~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~ 133 (210)
..+.++||+|......... ..+ ....-.++|++++... ....+.+.|...... .... .-+-=+|.||.|..
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~-p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQ-PKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcc-cccccCCCCEEEEeccccC
Confidence 5788999999665443211 112 2234568888887643 333332212221110 0000 01224778999964
Q ss_pred CCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 134 SERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
. ..-.+..+....+.|+.+++.
T Consensus 295 ~----~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 295 S----NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred C----CccHHHHHHHHHCcCeEEEec
Confidence 2 233456677777888666654
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.00 E-value=3.6e-05 Score=55.03 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=44.9
Q ss_pred EEEEEEEeCCCcccccc----chhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 61 KLKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
...+.++|++|...... ....+. ...+.+++|+|+...... . + +...+... .+ ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~-~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-N-QAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-H-HHHHHHhh---CC-CCEEEEECCcCCC
Confidence 34578899999753321 111111 248999999998644322 2 2 22222221 12 2457779999743
Q ss_pred CceecHHHHHHHHHHhCCeEEE
Q 028353 135 ERVVTKKEGINFAREYGCLFIE 156 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
.. ..+...+...+.|+..
T Consensus 154 ~~----g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 RG----GAALSIRAVTGKPIKF 171 (173)
T ss_pred Cc----chhhhhHHHHCcCeEe
Confidence 22 2233355666766543
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.98 E-value=0.00011 Score=56.34 Aligned_cols=94 Identities=22% Similarity=0.150 Sum_probs=67.2
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
+.+..+.++|-.++|+.+.+|+--....+.++-... ..++.-+|+.||+|+........++...+....+.+++.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 344455668888888888888754444443444443 3455568889999997665554455677777889999999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028353 158 SAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~ 175 (210)
|++++.+++++..++...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999987766543
No 401
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=4.2e-05 Score=57.62 Aligned_cols=119 Identities=22% Similarity=0.349 Sum_probs=71.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEEECCeEEEEEEEeCCCc-------cccccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ERFRTL 78 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~~~~~ 78 (210)
..-.|+|+-+|..|.|||||+..|++-.+..... ............-.+..++++++||.|. +.+..+
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 3567999999999999999999999877643222 2222222223333677889999999981 111111
Q ss_pred -----------hhh---------cc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 79 -----------TSS---------YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 79 -----------~~~---------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
... .+ ...++++|.+..+- .++..+.......+ +..+.+|-|+-|.|-...
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~L-----dskVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKL-----DSKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHH-----hhhhhhHHHHHHhhhhhH
Confidence 100 01 24577777777664 45555544333333 334556666678886443
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.95 E-value=4.7e-05 Score=55.56 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=49.2
Q ss_pred EEEEEEeCCCccccccc----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.++||+|....... +..++ ...+-+++|++++....- +.. ........ + +-=+|.||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~--~~~-~~~~~~~~----~-~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED--LEQ-ALAFYEAF----G-IDGLILTKLDETAR 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH--HHH-HHHHHHHS----S-TCEEEEESTTSSST
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH--HHH-HHHHhhcc----c-CceEEEEeecCCCC
Confidence 46899999996554322 11111 156788999998875432 222 22222221 1 12477999996422
Q ss_pred ceecHHHHHHHHHHhCCeEEEEcc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
.-.+..+....+.|+-.++.
T Consensus 156 ----~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 156 ----LGALLSLAYESGLPISYITT 175 (196)
T ss_dssp ----THHHHHHHHHHTSEEEEEES
T ss_pred ----cccceeHHHHhCCCeEEEEC
Confidence 23466777788988766653
No 403
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.94 E-value=4.3e-05 Score=53.18 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (210)
.+.+.++|++|... ....++..+|-++++...+-.+.+.-++ + ..+. ..-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~-~~~~-------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK--A-GIME-------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh--h-hHhh-------hcCEEEEeCCC
Confidence 46788999988542 2234788899999998877322221111 1 1111 23478899987
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=5e-05 Score=60.64 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=47.9
Q ss_pred EEEEEEeCCCccccccc----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.|+||+|....... ...++ ...+.+++|+|++-.. ..+.. . +..+.. .+ +-=+|.||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~-i---~~~F~~-~~-idglI~TKLDET~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE-I---ITNFKD-IH-IDGIVFTKFDETAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHH-H---HHHhcC-CC-CCEEEEEcccCCCC
Confidence 57899999996543221 22222 2356788898876332 12222 2 222211 11 23588999996432
Q ss_pred ceecHHHHHHHHHHhCCeEEEEcc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
.-.+..++...+.|+..++.
T Consensus 393 ----~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 393 ----SGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred ----ccHHHHHHHHHCcCEEEEeC
Confidence 23456677778888666653
No 405
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=9.6e-05 Score=60.10 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=78.1
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcC------------CCCCCCC---CceeeeEEEEEEE----------------C
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSD------------NFEELSP---TIGVDFKVKYVDV----------------G 58 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~------------~~~~~~~---~~~~~~~~~~~~~----------------~ 58 (210)
.....-++-++.+..-|||||-..|... .|..... .-+.++...-+.+ +
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 3445567889999999999999888522 1222211 2233333222221 5
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
+..+.++++|.||+..+.+...+.++-.|+.++|+|.-+.--.+.-.- +.+.+.+ .-+| +++.||.|.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV-LrQA~~E----RIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIAE----RIKP-VLVMNKMDR 162 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH-HHHHHHh----hccc-eEEeehhhH
Confidence 567899999999999999999999999999999999877643322211 3333332 2346 788999996
No 406
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.79 E-value=0.0004 Score=54.53 Aligned_cols=96 Identities=10% Similarity=0.151 Sum_probs=51.6
Q ss_pred EEEEEEeCCCccccccchhhccc--------CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
....++++.|.....++...++. ..+++|.|+|+.+-.....-.......+.. -=+|+.||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 45577899997665554444321 248899999987533211111112222221 127889999987
Q ss_pred CCceecHHHHHHHHHHhC--CeEEEEccCCCCCHHHHH
Q 028353 134 SERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~ 169 (210)
... +.+....+..+ ++++.++ ........+|
T Consensus 164 ~~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 164 GEA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred CHH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 532 34555555443 5566544 2223444443
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00022 Score=59.06 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=70.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--------C----CCCCCCc--------eeeeEEEEEEE-----------CCeE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDN--------F----EELSPTI--------GVDFKVKYVDV-----------GGKK 61 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~--------~----~~~~~~~--------~~~~~~~~~~~-----------~~~~ 61 (210)
..-.|+|+|++|+||||++..|...- . .+.+... +.......... ....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34578899999999999998875321 0 0000000 00000000000 1124
Q ss_pred EEEEEEeCCCccccccchhh---ccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 62 LKLAIWDTAGQERFRTLTSS---YYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
+.+.|+||+|.......... .+. .....++|++.+. +...+.. ....+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~e-ii~~f~~-----~~~~gvILTKlDEt~-- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDE-VVRRFAH-----AKPQGVVLTKLDETG-- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHH-HHHHHHh-----hCCeEEEEecCcCcc--
Confidence 67899999996543321110 011 1234567777664 2333322 2222221 135679999999632
Q ss_pred eecHHHHHHHHHHhCCeEEEEcc
Q 028353 137 VVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
..-.+..+....+.++.+++.
T Consensus 499 --~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 --RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred --chhHHHHHHHHhCCCEEEEeC
Confidence 234566777788888766654
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00018 Score=58.24 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=69.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCcee---eeE---------------EEEEE-E-----------CCeE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGV---DFK---------------VKYVD-V-----------GGKK 61 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~---~~~---------------~~~~~-~-----------~~~~ 61 (210)
..-.|+++|++|+||||++..|.+..... .....+. +.+ -..+. . .-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34589999999999999998776421000 0000000 000 00000 0 1122
Q ss_pred EEEEEEeCCCcccccc----chhhcc--cCccEEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 62 LKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
..+.++||+|...... ....+. ....-.++|+|++.. ..+..+.. .+. ..+ +-=+|.||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~----~f~----~~~-~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS----AYQ----GHG-IHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH----Hhc----CCC-CCEEEEEeeeCCC
Confidence 4678899999554222 111221 223457788888843 33332222 121 111 2247899999643
Q ss_pred CceecHHHHHHHHHHhCCeEEEEcc
Q 028353 135 ERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
..-.+..+....+.|+.+++.
T Consensus 341 ----~~G~~l~~~~~~~lPi~yvt~ 361 (420)
T PRK14721 341 ----SLGIALDAVIRRKLVLHYVTN 361 (420)
T ss_pred ----CccHHHHHHHHhCCCEEEEEC
Confidence 223456677788888766654
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.76 E-value=0.00051 Score=56.12 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=48.4
Q ss_pred EEEEEEeCCCccccccch----hh--cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLT----SS--YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
..+.++||+|........ .. .+..+|.+++|+|++... .... ....+.. ..+ ..-+|.||.|....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~~---~l~-i~gvIlTKlD~~a~ 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFHE---AVG-IGGIIITKLDGTAK 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHHh---cCC-CCEEEEecccCCCc
Confidence 368999999965543221 11 234678999999987653 2111 1111211 111 23577899996422
Q ss_pred ceecHHHHHHHHHHhCCeEEEEcc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
.-.+.......+.|+.+++.
T Consensus 248 ----~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 ----GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ----ccHHHHHHHHHCcCEEEEec
Confidence 12355566677888666654
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.76 E-value=0.00025 Score=57.74 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=48.8
Q ss_pred EEEEEEeCCCccccccchh----hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTS----SY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.++||+|......... .+ .-..+.+++|+|+.... .... +...+... -+ ..=+|.||.|....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~---v~-i~giIlTKlD~~~~ 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNER---LG-LTGVVLTKLDGDAR 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhh---CC-CCEEEEeCccCccc
Confidence 5689999999544322111 11 23578899999987542 2222 22222211 11 23577999995322
Q ss_pred ceecHHHHHHHHHHhCCeEEEEcc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
.-.+..+....++|+.++..
T Consensus 255 ----~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 ----GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----ccHHHHHHHHHCcCEEEEeC
Confidence 12266777778888766655
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.72 E-value=0.00025 Score=56.58 Aligned_cols=156 Identities=16% Similarity=0.152 Sum_probs=78.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEE-------------------EE----------CCeEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYV-------------------DV----------GGKKL 62 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~-------------------~~----------~~~~~ 62 (210)
.-.|.++||.||||||-+-.|..... ...+...-.+.....+ .. .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45688999999999998766643322 1111111111111111 00 11245
Q ss_pred EEEEEeCCCccccccc----hhhcccC--ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCC
Q 028353 63 KLAIWDTAGQERFRTL----TSSYYRG--AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESE 135 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~ 135 (210)
.+.|+||.|.+.++.. ...++.. ..-+.+|++++... ..+.. .+..+. .+|+ =+|.||.|..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlke----i~~~f~---~~~i~~~I~TKlDET-- 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKE----IIKQFS---LFPIDGLIFTKLDET-- 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHH----HHHHhc---cCCcceeEEEccccc--
Confidence 7899999997766543 2233332 23455677766432 23322 233322 1222 3788999953
Q ss_pred ceecHHHHHHHHHHhCCeEEEEccCCC--CCHHHH-HHHHHHHHHcCCCc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSAKTR--VNVQQC-FEELVLKILDTPSL 182 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~-~~~l~~~~~~~~~~ 182 (210)
-..-.........+.|+..++-=.. ++|... -.|+++.++.....
T Consensus 352 --~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~ 399 (407)
T COG1419 352 --TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN 399 (407)
T ss_pred --CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence 2233445556667777555543222 222221 35666666554433
No 412
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.69 E-value=0.00016 Score=49.78 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=59.0
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC
Q 028353 18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 18 ~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
+.-|.+|+|||++.-.+...-......+...+... ......+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 34578899999987665422111110111111110 000111678999999743 3334567888999999999864
Q ss_pred cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
.++..... .+..+... ....++.+|.|+.+..
T Consensus 79 -~s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYA-LIKKLAKQ--LRVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCCH
Confidence 33443333 33333321 1345677999999743
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.69 E-value=0.00015 Score=59.11 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=47.4
Q ss_pred EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.++||+|....... ...+ .-..+.+++|+|+.... .... ....+.. ..+ ..-+|.||.|....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~-~a~~F~~---~~~-i~giIlTKlD~~~r 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVN-TAKAFNE---ALG-LTGVILTKLDGDAR 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHH-HHHHHHh---hCC-CCEEEEeCccCccc
Confidence 56899999995433221 1111 12567889999986532 2222 1222221 111 22477799996322
Q ss_pred ceecHHHHHHHHHHhCCeEEEEcc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
. -.+.......+.|+.++..
T Consensus 256 g----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 G----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred c----cHHHHHHHHHCcCEEEEeC
Confidence 1 1256667777888766655
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.65 E-value=0.00043 Score=56.53 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=49.0
Q ss_pred EEEEEEEeCCCcccccc----chhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 61 KLKLAIWDTAGQERFRT----LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
.+.+.|+||+|...... ....++. ...-+++|++++-.. ..+.. ....+. ..+ +--+|.||.|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~-~~~~f~----~~~-~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKD-IYKHFS----RLP-LDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHH-HHHHhC----CCC-CCEEEEeccccc
Confidence 35789999999654431 2222333 234667778876432 22222 111121 111 225889999964
Q ss_pred CCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 134 SERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
.. .-.+..+....+.|+..++.=
T Consensus 371 ~~----~G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 371 SS----LGSILSLLIESGLPISYLTNG 393 (424)
T ss_pred cc----ccHHHHHHHHHCCCEEEEeCC
Confidence 22 224677778889997766643
No 415
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=7.6e-05 Score=67.00 Aligned_cols=110 Identities=24% Similarity=0.202 Sum_probs=62.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC--CCC-----CceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEE--LSP-----TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSS 81 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~ 81 (210)
-+|+|++|+||||++..-- ..|+. ... ..+ |..+.. .+ +-+-.++||.|.. .....|..
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdw-wf---~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDW-WF---TDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCc-cc---ccceEEEcCCcceecccCcchhhHHHHHH
Confidence 4788999999999886543 22211 111 122 222221 12 2235678998821 22234554
Q ss_pred c---------ccCccEEEEEEECCCccc---------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 82 Y---------YRGAQGIIMVYDVTRRDT---------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 82 ~---------~~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
+ .+..||+|+.+|+.+--+ ...++. -+.++.. ......|++|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~-RL~El~~-tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRA-RLQELRE-TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHH-HHHHHHH-hhccCCceEEEEecccccc
Confidence 4 246799999999775321 111222 2334443 2356789999999999853
No 416
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.65 E-value=4.3e-05 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 417
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.65 E-value=0.00031 Score=57.79 Aligned_cols=88 Identities=9% Similarity=0.073 Sum_probs=45.7
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
.+|+|=|+-+....+.... +...+..+......|+|++++-+-...-..-.......+-...++..+..+.....-+..
T Consensus 196 ~liLveDLPn~~~~d~~~~-f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK 274 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSET-FREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK 274 (634)
T ss_pred eEEEeeccchhhhhhhHHH-HHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence 4577777776555543333 555555666667789999998765532221111112222233445444444444444444
Q ss_pred HHHHHHHHH
Q 028353 168 CFEELVLKI 176 (210)
Q Consensus 168 ~~~~l~~~~ 176 (210)
.+..|+...
T Consensus 275 ~L~ric~~e 283 (634)
T KOG1970|consen 275 FLKRICRIE 283 (634)
T ss_pred HHHHHHHHh
Confidence 444444443
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.63 E-value=8e-05 Score=57.00 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=40.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEE-EEECCeEEEEEEEeCCCc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKY-VDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~ 72 (210)
.....++.|+|-||+|||||||++-... ...+...+|.+..... +.+.. +-.+.+.||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence 3467899999999999999999875432 2333345565555444 33322 234778899994
No 419
>PRK08118 topology modulation protein; Reviewed
Probab=97.62 E-value=5.1e-05 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-||+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999754
No 420
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.62 E-value=0.00055 Score=57.17 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
=+++.||+||||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3566799999999999998754
No 421
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.00034 Score=47.83 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-.+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 422
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=5.3e-05 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.59 E-value=0.00054 Score=43.48 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=44.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-hhhcccCccEEEEEEEC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~ 95 (210)
+++.|.+|+||||+...+...-....+.. ..++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999988764321111111 1111 6788899986443321 14556678999999987
Q ss_pred CCcc
Q 028353 96 TRRD 99 (210)
Q Consensus 96 ~~~~ 99 (210)
....
T Consensus 69 ~~~~ 72 (99)
T cd01983 69 EALA 72 (99)
T ss_pred chhh
Confidence 7543
No 424
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.57 E-value=6.3e-05 Score=54.44 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.=|+|+||+|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34889999999999999999865
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.0003 Score=56.06 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=47.5
Q ss_pred EEEEEEEeCCCccccccch----hhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 61 KLKLAIWDTAGQERFRTLT----SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.+.+.|+||+|........ ..+.. ..+.+++|.++.. ....+.. . +..+. .. -+--+|.||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~-i---~~~f~-~l-~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMT-I---LPKLA-EI-PIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHH-H---HHhcC-cC-CCCEEEEEcccCCC
Confidence 3678999999975433321 11222 3466677776532 2233322 2 22211 11 13358899999642
Q ss_pred CceecHHHHHHHHHHhCCeEEEEcc
Q 028353 135 ERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
. .-.+..+....+.|+..++.
T Consensus 357 ~----~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 R----IGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred C----ccHHHHHHHHHCCCEEEEec
Confidence 2 23456667788888766664
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.54 E-value=7.1e-05 Score=53.43 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
+|+|+|++|||||||++.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 427
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.54 E-value=0.0004 Score=53.45 Aligned_cols=106 Identities=11% Similarity=0.201 Sum_probs=64.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----------------
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------------- 72 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------------- 72 (210)
...+.-+++++|++|.|||+++++|.....+.. .... ..+.+..+..|..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA------------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC------------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 445667899999999999999999996553321 1111 1123334444431
Q ss_pred -------cccccchhhcccCccEEEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 73 -------ERFRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 73 -------~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
..........++...+=++++|--+. .+...-+. ++..++...+.-.+|+|.||+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence 11122233456777888999993321 22333333 6666666677888999999864
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.53 E-value=7e-05 Score=51.59 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999733
No 429
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.51 E-value=4.5e-05 Score=60.18 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=56.3
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--cchhhcccCcc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--TLTSSYYRGAQ 87 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~~~~~~~~~~d 87 (210)
....-|-|.|+|.|++||||+||.|-..+...+.|.+|.|--=..+. -..++-|+|+||..... +.....+ -
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence 34567899999999999999999999988888888666543111011 22357788999954322 2233332 3
Q ss_pred EEEEEEECCCccc
Q 028353 88 GIIMVYDVTRRDT 100 (210)
Q Consensus 88 ~~i~v~d~~~~~s 100 (210)
++|-|-.+.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 5666777777654
No 430
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00072 Score=54.64 Aligned_cols=133 Identities=17% Similarity=0.236 Sum_probs=68.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-CC----------CCCC------------CceeeeEEEE-E-----EECCeEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDN-FE----------ELSP------------TIGVDFKVKY-V-----DVGGKKLKL 64 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~-~~----------~~~~------------~~~~~~~~~~-~-----~~~~~~~~~ 64 (210)
..-++|+|++||||||++..|.... .. +.+. ..+..+.... . .+....+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999998886321 00 0000 0000000000 0 001124567
Q ss_pred EEEeCCCcccccc----chhhccc-----CccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 65 AIWDTAGQERFRT----LTSSYYR-----GAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 65 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.++||+|...... .+..++. ...-.++|+|++-.. ...... ..+. ..+ +-=+|.||.|...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~----~~f~----~~~-~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL----KAYE----SLN-YRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH----HHhc----CCC-CCEEEEEcccCCC
Confidence 8999999643221 1222222 234678899988654 222221 1121 111 2358899999642
Q ss_pred CceecHHHHHHHHHHhCCeEEEEcc
Q 028353 135 ERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
. .-.+..+....+.|+..++.
T Consensus 374 ~----~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 F----LGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred C----ccHHHHHHHHHCCCEEEEec
Confidence 2 22356667777888766654
No 431
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
+....-|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345566888999999999999999754
No 432
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=5.3e-05 Score=53.87 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKL 62 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (210)
.=+++.||+|+|||||++.|+... .-......+|........+|..+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY 51 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDY 51 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCcee
Confidence 347888999999999999999765 21111233333333344455444
No 433
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00065 Score=58.81 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCCC-C--CceeeeE---------------EEEEE-E-----------CCeEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELS-P--TIGVDFK---------------VKYVD-V-----------GGKKLK 63 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~-~~~~-~--~~~~~~~---------------~~~~~-~-----------~~~~~~ 63 (210)
--|+|+|+.|+||||.+..|..... .... . -...+.+ ...+. . ....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4688999999999999988874321 0000 0 0000000 00000 0 112346
Q ss_pred EEEEeCCCcccccc----chhhc--ccCccEEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCCC
Q 028353 64 LAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKESE 135 (210)
Q Consensus 64 ~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~ 135 (210)
+.|+||+|...... ....+ ....+-.++|+|++.. +.+..+.. .|..... -+-=+|.||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~-------~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH-------AYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH-------HHhhcccCCCCEEEEeccCCCCC
Confidence 88999999443222 11111 2234567899998743 22333322 2111110 122478999996432
Q ss_pred ceecHHHHHHHHHHhCCeEEEEccC
Q 028353 136 RVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
.-.+..+....+.|+.+++.=
T Consensus 339 ----~G~iL~i~~~~~lPI~yit~G 359 (767)
T PRK14723 339 ----LGPALDTVIRHRLPVHYVSTG 359 (767)
T ss_pred ----ccHHHHHHHHHCCCeEEEecC
Confidence 223566677788887766543
No 434
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.46 E-value=0.00047 Score=39.18 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=25.2
Q ss_pred CccEEEEEEECCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028353 85 GAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (210)
-.++++|++|++... +.+.-.. ++..++. ...++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLS-LFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHH--HTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHH-HHHHHHH--HcCCCCEEEEEeccC
Confidence 368999999998754 3443333 4444543 345799999999998
No 435
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.43 E-value=9.7e-05 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 436
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0023 Score=51.61 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=48.4
Q ss_pred EEEEEEEeCCCcccccc----chhhcccCc--c-EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 61 KLKLAIWDTAGQERFRT----LTSSYYRGA--Q-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
.+.+.++||+|...... ....++... + -.++|+|++... ..+.. .+..+... -+-=+|.||.|..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~----~~~~~~~~--~~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKE----IFHQFSPF--SYKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHH----HHHHhcCC--CCCEEEEEeccCC
Confidence 46789999999654332 112222322 3 578999988652 22222 22222111 1235889999964
Q ss_pred CCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 134 SERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
.. .-.+..+....+.|+..++.
T Consensus 326 ~~----~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 326 TC----VGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred Cc----chHHHHHHHHHCCCEEEEeC
Confidence 32 22355666777888666653
No 437
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.43 E-value=0.0029 Score=50.23 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=53.0
Q ss_pred EEEEEEeCCCccccccchhhcc-------cCccEEEEEEECCCccc--H--------------------HHHHHHHHHHH
Q 028353 62 LKLAIWDTAGQERFRTLTSSYY-------RGAQGIIMVYDVTRRDT--F--------------------TNLSDVWAKEI 112 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~~~~~~~ 112 (210)
....++++.|......+...+. -..|++|.|+|+.+-.. + ..+...+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999766555444431 14589999999874311 0 01112123333
Q ss_pred hhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hC--CeEEEEccCCCCCHHHHHH
Q 028353 113 DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YG--CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 113 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~~i~~~~~ 170 (210)
.. .=+|+.||+|+.....+ +.++...+. .. .++++++ ........+|+
T Consensus 173 ~~-------AD~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 AC-------ADLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred Hh-------CCEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 32 23789999998755432 233444443 22 3455554 33345665554
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.42 E-value=0.00017 Score=42.00 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
..+|.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988763
No 439
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.00065 Score=51.99 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCcccccc----chhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 61 KLKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.+.+.++||+|...... .+..++ ...+-+++|+|++... ..+.. +...+.. . .+-=+|.||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~-~~~~f~~----~-~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE-IITNFKD----I-HIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHH-HHHHhCC----C-CCCEEEEEeecCCC
Confidence 46789999999654322 122222 2456789999987432 12211 2121211 1 22358899999643
Q ss_pred CceecHHHHHHHHHHhCCeEEEEcc
Q 028353 135 ERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
. .-.+..+....+.|+..++.
T Consensus 226 ~----~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 226 S----SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred C----ccHHHHHHHHHCcCEEEEeC
Confidence 2 22456667778888666653
No 440
>PRK04195 replication factor C large subunit; Provisional
Probab=97.37 E-value=0.0022 Score=53.46 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.++|.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999754
No 441
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.36 E-value=0.00083 Score=43.59 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=47.3
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 17 LLMIG-DSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~i~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
|.|.| ..|+||||+...+...-.....+... +..+.. +.+.++|+|+.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~-------~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLL-------IDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEE-------EeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56677 56899999987765322111111111 111111 67899999986432 233667789999999987
Q ss_pred CCcccHHHHHH
Q 028353 96 TRRDTFTNLSD 106 (210)
Q Consensus 96 ~~~~s~~~~~~ 106 (210)
+. .++..+..
T Consensus 72 ~~-~s~~~~~~ 81 (104)
T cd02042 72 SP-LDLDGLEK 81 (104)
T ss_pred CH-HHHHHHHH
Confidence 54 44555544
No 442
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00023 Score=51.97 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~ 40 (210)
=.++|+||+|||||||++.+.+-+..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC
Confidence 35789999999999999999876543
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.35 E-value=0.0002 Score=42.93 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998854
No 444
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.31 E-value=0.00022 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999998664
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00021 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
-|.++|++|||||||++-+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999987643
No 446
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.29 E-value=0.00023 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999855
No 447
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.26 E-value=0.00024 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=23.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...+|++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999854
No 448
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.24 E-value=0.00026 Score=47.66 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 449
>PRK06217 hypothetical protein; Validated
Probab=97.24 E-value=0.00027 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.+|+|+|.+|||||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
No 450
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00029 Score=52.26 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
+|+|+|+|||||||+.+.|.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999886
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.00033 Score=47.49 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~ 40 (210)
-.++++|++|+||||++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999865443
No 452
>PRK03839 putative kinase; Provisional
Probab=97.22 E-value=0.00029 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
+|+++|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998643
No 453
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.0057 Score=45.33 Aligned_cols=62 Identities=26% Similarity=0.319 Sum_probs=37.4
Q ss_pred EEEEEeCC-CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCC
Q 028353 63 KLAIWDTA-GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKE 133 (210)
Q Consensus 63 ~~~l~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~ 133 (210)
.+.++||- |.+. +-+...+++|.+|+|+|.+-. ++...+. +.......+ .++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEH---fgRg~~~~vD~vivVvDpS~~-sl~taer-----i~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEH---FGRGTIEGVDLVIVVVDPSYK-SLRTAER-----IKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhh---hccccccCCCEEEEEeCCcHH-HHHHHHH-----HHHHHHHhCCceEEEEEeeccch
Confidence 44555552 3322 334567789999999998853 3333322 222223344 7899999999953
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.21 E-value=0.00035 Score=51.69 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
-++|+|++|||||||++-+.+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 478999999999999999986654
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.19 E-value=0.00047 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 456
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.19 E-value=0.00035 Score=48.14 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.|.|+|+.|||||||++.|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998744
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.18 E-value=0.00035 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999754
No 458
>PRK01889 GTPase RsgA; Reviewed
Probab=97.18 E-value=0.00047 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
-+++|+|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999986543
No 459
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.15 E-value=0.00034 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 460
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.13 E-value=0.00037 Score=50.30 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
.|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999997
No 461
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.13 E-value=0.00037 Score=52.62 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368899999999999999975
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.13 E-value=0.00041 Score=47.63 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 463
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.00069 Score=53.55 Aligned_cols=106 Identities=19% Similarity=0.267 Sum_probs=58.2
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhc--------------CCCCCC--------CCCceeeeEEEEE----------
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTS--------------DNFEEL--------SPTIGVDFKVKYV---------- 55 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~--------------~~~~~~--------~~~~~~~~~~~~~---------- 55 (210)
+....++-=|.|+|..|+||||.+-.|.. ..|... ..-.+..++....
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~e 174 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASE 174 (483)
T ss_pred ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHH
Confidence 34445666789999999999998866531 111100 0000111111000
Q ss_pred ---EECCeEEEEEEEeCCCcccccc-c---hhh--cccCccEEEEEEECCCcccHHHHHHHHHHHHh
Q 028353 56 ---DVGGKKLKLAIWDTAGQERFRT-L---TSS--YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID 113 (210)
Q Consensus 56 ---~~~~~~~~~~l~D~~g~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 113 (210)
.+..+.+.+.|+||.|...... + ... -.-+.|-+|+|+|++-....+.-..-+...+.
T Consensus 175 gv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 175 GVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred HHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 0122457899999999543222 1 111 12357999999999987665544333555544
No 464
>PRK13949 shikimate kinase; Provisional
Probab=97.13 E-value=0.00044 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
+|+++|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 465
>PRK14532 adenylate kinase; Provisional
Probab=97.12 E-value=0.0004 Score=50.32 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
No 466
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.10 E-value=0.00054 Score=50.47 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
....-|+|.|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999753
No 467
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.10 E-value=0.00049 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988743
No 468
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.08 E-value=0.00049 Score=44.84 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028353 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~ 35 (210)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999986
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.08 E-value=0.00043 Score=50.57 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999754
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.07 E-value=0.0018 Score=45.26 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
++|.|++|+|||+|+..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999988654
No 471
>PRK14531 adenylate kinase; Provisional
Probab=97.06 E-value=0.00052 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
.+|+++|+|||||||+...|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 472
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.06 E-value=0.0005 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.++|+|+|+|||||||+...|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998853
No 473
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.06 E-value=0.058 Score=38.18 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=96.5
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
+-.....|+++|..+.++..|...+...+- + + ...+.... -+|-..+..... ...|.+
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~-----~----~-~l~Vh~a~--------sLPLp~e~~~lR----prIDlI 68 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDK-----E----F-KLKVHLAK--------SLPLPSENNNLR----PRIDLI 68 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhcc-----c----e-eEEEEEec--------cCCCcccccCCC----ceeEEE
Confidence 334578999999999999999999985321 1 1 11111100 111111111111 248999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
+|++|.....++..++. =+..+...... + -+.++++-....+...+...++.+++..+.+|++.+.-.+..+...+-
T Consensus 69 VFvinl~sk~SL~~ve~-SL~~vd~~ffl-G-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEA-SLSHVDPSFFL-G-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEecCCcccHHHHHH-HHhhCChhhhc-c-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 99999999999998877 44444321111 2 245666666666667888999999999999999999998888888877
Q ss_pred HHHHHHHHc
Q 028353 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
..+++.+.-
T Consensus 146 qRLL~~lqi 154 (176)
T PF11111_consen 146 QRLLRMLQI 154 (176)
T ss_pred HHHHHHHHH
Confidence 777776643
No 474
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.05 E-value=0.00046 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 475
>PRK00625 shikimate kinase; Provisional
Probab=97.03 E-value=0.00058 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.03 E-value=0.00059 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.-.++|+|++|||||||++.+++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999998643
No 477
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.00051 Score=53.97 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~ 38 (210)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999999999997653
No 478
>PRK08233 hypothetical protein; Provisional
Probab=97.03 E-value=0.00054 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
+-|+|.|.+|||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999743
No 479
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.03 E-value=0.0006 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
....|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
No 480
>PRK02496 adk adenylate kinase; Provisional
Probab=97.03 E-value=0.00062 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
.+|+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 481
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.03 E-value=0.00047 Score=50.90 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 482
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.03 E-value=0.00055 Score=49.29 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 028353 17 LLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~ 36 (210)
|+++|+|||||||+...|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
No 483
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00056 Score=51.49 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-+.++||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999997
No 484
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.00065 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~ 35 (210)
..-.++++|++|+|||||++.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999999886
No 485
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.00087 Score=48.10 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
-=.++++|+.|+|||||++.+.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34688999999999999999987643
No 486
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.00 E-value=0.0024 Score=41.70 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=53.2
Q ss_pred cCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc
Q 028353 21 GDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 99 (210)
Q Consensus 21 G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 99 (210)
+..|+||||+...|...-... ...+...+.. ..... .+.++|+|+.... .....+..+|.++++.+.+. .
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-P 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-H
Confidence 456799999887765322111 1111111111 11111 6788999985432 33456788999999998664 3
Q ss_pred cHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 100 TFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 100 s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
+...... +...+..........+.+|+|+
T Consensus 78 s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKR-LLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence 4444444 4444444221113355666664
No 487
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.99 E-value=0.00054 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|+|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.99 E-value=0.002 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~ 38 (210)
|+|.|++||||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887543
No 489
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.99 E-value=0.0093 Score=42.72 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=58.3
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT 139 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (210)
..+.+.++|+|+... ......+..+|.+++++..+. .+...+.. +...+.. .+.|+.+|+|+.|.... .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~-~~~~l~~----~~~~~~vV~N~~~~~~~---~ 159 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLER-AVELVRH----FGIPVGVVINKYDLNDE---I 159 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHH-HHHHHHH----cCCCEEEEEeCCCCCcc---h
Confidence 457889999997543 233455688999999999884 35555555 4444443 34678899999996422 3
Q ss_pred HHHHHHHHHHhCCeEEE
Q 028353 140 KKEGINFAREYGCLFIE 156 (210)
Q Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (210)
.++++++....+++++-
T Consensus 160 ~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 160 AEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHHcCCCeEE
Confidence 45667778888887653
No 490
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.99 E-value=0.0026 Score=43.30 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 491
>PHA00729 NTP-binding motif containing protein
Probab=96.98 E-value=0.00077 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...+|+|.|+||+|||+|+.++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998643
No 492
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.98 E-value=0.0007 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 67899999999999999999764
No 493
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.98 E-value=0.00084 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..-+.|+|++|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999854
No 494
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00053 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~ 35 (210)
....||+|.|-||+|||||..++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 667899999999999999999986
No 495
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.94 E-value=0.00079 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
=.++++|++|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 496
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.94 E-value=0.0008 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999754
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.94 E-value=0.00079 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 498
>PLN02200 adenylate kinase family protein
Probab=96.93 E-value=0.0011 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...+.|+|+|+|||||||+..+|..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.92 E-value=0.00086 Score=48.65 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998654
No 500
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.92 E-value=0.00086 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999764
Done!