Query 028353
Match_columns 210
No_of_seqs 151 out of 1669
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.6E-42 2.6E-46 251.9 17.9 199 9-210 8-207 (216)
2 2bov_A RAla, RAS-related prote 100.0 7.4E-37 2.5E-41 223.9 18.8 178 1-180 1-179 (206)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 6.2E-36 2.1E-40 219.3 22.7 171 11-183 5-176 (206)
4 3cpj_B GTP-binding protein YPT 100.0 1.4E-35 4.9E-40 220.0 19.9 174 9-184 8-182 (223)
5 3tkl_A RAS-related protein RAB 100.0 5.5E-34 1.9E-38 207.1 22.0 175 6-182 8-183 (196)
6 2nzj_A GTP-binding protein REM 100.0 2.3E-34 7.9E-39 205.3 19.3 167 12-179 2-170 (175)
7 1vg8_A RAS-related protein RAB 100.0 1.1E-34 3.8E-39 212.6 17.4 169 11-181 5-178 (207)
8 4dsu_A GTPase KRAS, isoform 2B 100.0 3.1E-34 1E-38 207.1 19.5 169 12-182 2-170 (189)
9 3t5g_A GTP-binding protein RHE 100.0 6.1E-34 2.1E-38 204.4 20.8 170 11-182 3-173 (181)
10 3kkq_A RAS-related protein M-R 100.0 8.5E-34 2.9E-38 204.0 21.4 169 9-179 13-183 (183)
11 2hup_A RAS-related protein RAB 100.0 2.8E-34 9.7E-39 209.8 19.1 173 6-180 21-195 (201)
12 2g6b_A RAS-related protein RAB 100.0 1.9E-33 6.6E-38 201.5 22.3 170 9-180 5-176 (180)
13 3reg_A RHO-like small GTPase; 100.0 1.7E-33 5.7E-38 204.5 22.0 174 5-181 14-191 (194)
14 1x3s_A RAS-related protein RAB 100.0 1.5E-33 5.2E-38 204.5 21.7 174 10-185 11-185 (195)
15 2ew1_A RAS-related protein RAB 100.0 9.1E-34 3.1E-38 207.1 20.5 170 8-179 20-190 (201)
16 1z0f_A RAB14, member RAS oncog 100.0 9.8E-34 3.4E-38 202.7 20.3 168 9-178 10-178 (179)
17 3q72_A GTP-binding protein RAD 100.0 4.1E-34 1.4E-38 202.4 18.0 164 14-179 2-165 (166)
18 2gf9_A RAS-related protein RAB 100.0 2.3E-33 7.7E-38 203.0 22.1 171 7-179 15-186 (189)
19 2gf0_A GTP-binding protein DI- 100.0 3.2E-34 1.1E-38 208.8 17.6 169 10-181 4-174 (199)
20 2a5j_A RAS-related protein RAB 100.0 1.5E-33 5.3E-38 204.2 20.9 171 7-179 14-185 (191)
21 2efe_B Small GTP-binding prote 100.0 1.7E-33 5.8E-38 202.0 20.7 171 8-180 6-177 (181)
22 2j0v_A RAC-like GTP-binding pr 100.0 5.1E-34 1.7E-38 210.0 18.1 168 12-182 7-184 (212)
23 3tw8_B RAS-related protein RAB 100.0 2.9E-33 1E-37 200.5 21.4 168 10-180 5-173 (181)
24 1r2q_A RAS-related protein RAB 100.0 1.5E-33 5.3E-38 199.9 19.3 165 11-177 3-168 (170)
25 1z08_A RAS-related protein RAB 100.0 1.5E-33 5.1E-38 200.2 19.2 166 11-178 3-169 (170)
26 3q85_A GTP-binding protein REM 100.0 1.5E-33 5.3E-38 200.0 18.6 165 14-179 2-168 (169)
27 2fu5_C RAS-related protein RAB 100.0 9.1E-34 3.1E-38 203.9 17.5 167 11-179 5-172 (183)
28 3cbq_A GTP-binding protein REM 100.0 1.5E-33 5.1E-38 205.1 18.7 171 10-181 19-191 (195)
29 2bme_A RAB4A, RAS-related prot 100.0 4.2E-33 1.4E-37 200.8 20.9 169 10-180 6-175 (186)
30 1zbd_A Rabphilin-3A; G protein 100.0 6.1E-33 2.1E-37 202.8 22.0 168 10-179 4-172 (203)
31 2oil_A CATX-8, RAS-related pro 100.0 4.1E-33 1.4E-37 202.2 20.6 169 9-179 20-189 (193)
32 3oes_A GTPase rhebl1; small GT 100.0 1E-33 3.4E-38 206.8 17.3 171 10-182 20-191 (201)
33 1u8z_A RAS-related protein RAL 100.0 3.2E-33 1.1E-37 197.8 19.3 164 13-178 3-167 (168)
34 3ihw_A Centg3; RAS, centaurin, 100.0 3E-33 1E-37 201.7 19.5 167 7-180 13-182 (184)
35 3q3j_B RHO-related GTP-binding 100.0 1.9E-33 6.6E-38 207.3 18.8 175 6-183 19-208 (214)
36 1z2a_A RAS-related protein RAB 100.0 2.7E-33 9.3E-38 198.4 18.8 164 12-178 3-167 (168)
37 1z06_A RAS-related protein RAB 100.0 2.3E-33 8E-38 202.9 18.6 169 9-178 15-188 (189)
38 2fg5_A RAB-22B, RAS-related pr 100.0 2E-33 7E-38 203.8 18.2 170 8-179 17-187 (192)
39 2fn4_A P23, RAS-related protei 100.0 3.7E-33 1.3E-37 200.0 19.2 169 10-180 5-174 (181)
40 2o52_A RAS-related protein RAB 100.0 1.6E-33 5.5E-38 205.6 17.5 169 9-179 20-189 (200)
41 1c1y_A RAS-related protein RAP 100.0 3.5E-33 1.2E-37 197.6 18.7 163 13-177 2-166 (167)
42 2il1_A RAB12; G-protein, GDP, 100.0 1.8E-33 6E-38 204.1 17.5 172 6-179 18-191 (192)
43 1z0j_A RAB-22, RAS-related pro 100.0 8E-33 2.7E-37 196.3 20.4 165 11-177 3-168 (170)
44 3dz8_A RAS-related protein RAB 100.0 2.2E-34 7.4E-39 208.7 12.5 171 8-180 17-188 (191)
45 2g3y_A GTP-binding protein GEM 100.0 3.7E-33 1.3E-37 205.0 19.2 169 10-179 33-204 (211)
46 3bc1_A RAS-related protein RAB 100.0 8.8E-33 3E-37 200.2 20.9 170 9-179 6-186 (195)
47 1ek0_A Protein (GTP-binding pr 100.0 5.5E-33 1.9E-37 197.1 19.1 163 13-177 2-168 (170)
48 2a9k_A RAS-related protein RAL 100.0 5.4E-33 1.8E-37 200.2 19.1 170 8-179 12-182 (187)
49 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.3E-32 7.9E-37 195.3 22.2 168 10-179 3-175 (177)
50 1g16_A RAS-related protein SEC 100.0 8.4E-33 2.9E-37 196.2 19.4 164 13-179 2-166 (170)
51 1kao_A RAP2A; GTP-binding prot 100.0 4.8E-33 1.6E-37 196.7 17.6 164 13-178 2-166 (167)
52 3c5c_A RAS-like protein 12; GD 100.0 5.9E-33 2E-37 200.6 18.2 166 10-178 17-186 (187)
53 2atx_A Small GTP binding prote 100.0 2.6E-32 9.1E-37 198.1 21.7 166 10-178 14-193 (194)
54 2hxs_A RAB-26, RAS-related pro 100.0 4.2E-33 1.5E-37 199.4 17.2 169 11-180 3-175 (178)
55 2p5s_A RAS and EF-hand domain 100.0 3.9E-33 1.3E-37 203.4 17.1 168 9-178 23-197 (199)
56 2y8e_A RAB-protein 6, GH09086P 100.0 9.1E-33 3.1E-37 197.6 18.4 168 9-178 9-177 (179)
57 2atv_A RERG, RAS-like estrogen 100.0 7.6E-33 2.6E-37 201.4 17.9 167 11-180 25-193 (196)
58 2f7s_A C25KG, RAS-related prot 100.0 6.9E-33 2.3E-37 204.6 16.0 171 9-180 20-201 (217)
59 2j1l_A RHO-related GTP-binding 100.0 2.5E-32 8.5E-37 201.4 18.8 166 12-180 32-211 (214)
60 2q3h_A RAS homolog gene family 100.0 2.8E-32 9.5E-37 199.0 18.7 169 9-180 15-197 (201)
61 3con_A GTPase NRAS; structural 100.0 1.1E-31 3.7E-36 194.2 21.6 168 10-180 17-185 (190)
62 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.7E-32 1.9E-36 194.7 20.0 166 12-180 3-182 (186)
63 2iwr_A Centaurin gamma 1; ANK 100.0 5.2E-32 1.8E-36 193.8 19.6 162 12-180 5-171 (178)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 2.9E-32 1E-36 196.3 18.2 165 11-178 4-183 (184)
65 2ce2_X GTPase HRAS; signaling 100.0 1.4E-31 4.9E-36 188.8 21.3 162 14-178 3-165 (166)
66 3cph_A RAS-related protein SEC 100.0 4.9E-32 1.7E-36 199.3 19.3 169 9-180 15-184 (213)
67 4djt_A GTP-binding nuclear pro 100.0 2.1E-32 7E-37 202.2 17.3 177 9-187 6-184 (218)
68 3clv_A RAB5 protein, putative; 100.0 1.1E-31 3.7E-36 196.0 20.7 164 11-179 4-205 (208)
69 2gco_A H9, RHO-related GTP-bin 100.0 1.8E-31 6E-36 194.9 21.7 164 12-178 23-200 (201)
70 1ky3_A GTP-binding protein YPT 100.0 3E-32 1E-36 195.4 17.1 168 11-179 5-179 (182)
71 1gwn_A RHO-related GTP-binding 100.0 5E-32 1.7E-36 198.5 18.0 166 10-178 24-204 (205)
72 2erx_A GTP-binding protein DI- 100.0 6.2E-32 2.1E-36 192.0 16.9 164 13-178 2-167 (172)
73 2yc2_C IFT27, small RAB-relate 100.0 1.9E-32 6.4E-37 200.7 14.5 168 12-180 18-194 (208)
74 4gzl_A RAS-related C3 botulinu 100.0 4.9E-32 1.7E-36 198.4 16.6 164 10-176 26-203 (204)
75 2fv8_A H6, RHO-related GTP-bin 100.0 3.4E-31 1.2E-35 194.3 20.8 166 12-180 23-202 (207)
76 2cjw_A GTP-binding protein GEM 100.0 2.2E-31 7.6E-36 193.1 18.9 167 12-179 4-173 (192)
77 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-31 4.5E-36 190.3 16.3 161 12-179 5-170 (171)
78 3gj0_A GTP-binding nuclear pro 100.0 4.3E-32 1.5E-36 200.9 14.2 172 7-183 8-180 (221)
79 3bwd_D RAC-like GTP-binding pr 100.0 2.3E-32 7.9E-37 196.2 12.1 164 12-178 6-181 (182)
80 3t1o_A Gliding protein MGLA; G 100.0 5.4E-32 1.9E-36 196.6 12.8 167 9-180 9-194 (198)
81 3l0i_B RAS-related protein RAB 100.0 1.2E-33 4.1E-38 206.1 3.8 168 10-179 29-197 (199)
82 4bas_A ADP-ribosylation factor 100.0 2.3E-31 7.8E-36 193.7 15.6 171 5-180 8-191 (199)
83 1r8s_A ADP-ribosylation factor 100.0 7.5E-32 2.6E-36 190.4 11.3 157 15-178 1-162 (164)
84 1m2o_B GTP-binding protein SAR 100.0 1.6E-30 5.5E-35 188.3 17.6 157 12-175 21-189 (190)
85 1f6b_A SAR1; gtpases, N-termin 100.0 7.5E-31 2.6E-35 191.2 15.8 157 12-175 23-196 (198)
86 1ksh_A ARF-like protein 2; sma 100.0 6.5E-30 2.2E-34 184.2 18.4 161 12-179 16-181 (186)
87 2b6h_A ADP-ribosylation factor 100.0 2.1E-31 7E-36 193.3 10.1 161 11-178 26-191 (192)
88 2x77_A ADP-ribosylation factor 100.0 4.5E-31 1.5E-35 190.8 11.8 162 12-180 20-186 (189)
89 1zj6_A ADP-ribosylation factor 100.0 2.9E-30 1E-34 186.3 15.3 164 12-182 14-182 (187)
90 2h17_A ADP-ribosylation factor 100.0 1.4E-30 4.9E-35 187.0 13.6 162 7-175 14-180 (181)
91 1fzq_A ADP-ribosylation factor 100.0 2.6E-31 8.9E-36 191.0 9.4 161 12-179 14-179 (181)
92 1zd9_A ADP-ribosylation factor 100.0 1.1E-30 3.6E-35 188.8 12.5 161 11-178 19-185 (188)
93 2h57_A ADP-ribosylation factor 100.0 1.8E-29 6E-34 182.6 16.8 162 9-177 16-186 (190)
94 2f9l_A RAB11B, member RAS onco 100.0 1.4E-28 4.8E-33 179.2 20.6 166 12-179 3-169 (199)
95 2wkq_A NPH1-1, RAS-related C3 100.0 5.1E-29 1.7E-33 194.8 19.4 165 12-179 153-331 (332)
96 1moz_A ARL1, ADP-ribosylation 100.0 1.1E-30 3.9E-35 187.6 8.9 161 12-179 16-181 (183)
97 3llu_A RAS-related GTP-binding 100.0 4.1E-30 1.4E-34 187.0 11.5 168 5-176 11-195 (196)
98 3th5_A RAS-related C3 botulinu 99.9 4.1E-32 1.4E-36 198.7 0.0 164 10-176 26-203 (204)
99 1oix_A RAS-related protein RAB 100.0 2.7E-28 9.1E-33 176.7 19.8 167 8-176 23-190 (191)
100 2fh5_B SR-beta, signal recogni 100.0 2.2E-29 7.4E-34 185.4 10.3 163 11-175 4-213 (214)
101 2zej_A Dardarin, leucine-rich 100.0 2.6E-29 8.8E-34 181.0 10.3 164 14-180 2-180 (184)
102 3o47_A ADP-ribosylation factor 100.0 4.3E-29 1.5E-33 194.9 10.8 161 12-179 163-328 (329)
103 3lvq_E ARF-GAP with SH3 domain 100.0 2.2E-28 7.6E-33 201.0 12.6 163 12-181 320-487 (497)
104 3c5h_A Glucocorticoid receptor 100.0 9E-29 3.1E-33 186.9 9.0 167 8-177 13-254 (255)
105 2lkc_A Translation initiation 99.9 6E-27 2.1E-31 167.3 15.3 160 11-181 5-174 (178)
106 3iev_A GTP-binding protein ERA 99.9 5.6E-27 1.9E-31 181.5 15.8 172 9-185 5-189 (308)
107 2qu8_A Putative nucleolar GTP- 99.9 3.4E-27 1.2E-31 175.4 14.0 165 12-180 27-207 (228)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 2.2E-27 7.5E-32 183.7 12.9 164 13-181 2-184 (307)
109 1svi_A GTP-binding protein YSX 99.9 4.7E-27 1.6E-31 170.3 13.5 160 9-177 18-194 (195)
110 2wji_A Ferrous iron transport 99.9 6.8E-27 2.3E-31 165.4 13.0 152 14-176 3-163 (165)
111 2cxx_A Probable GTP-binding pr 99.9 2E-27 6.7E-32 171.5 10.2 159 15-181 2-187 (190)
112 2dyk_A GTP-binding protein; GT 99.9 3.2E-27 1.1E-31 166.0 9.7 149 15-176 2-160 (161)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 2.9E-28 9.8E-33 187.5 3.2 168 16-191 1-187 (331)
114 3pqc_A Probable GTP-binding pr 99.9 7.1E-26 2.4E-30 163.9 14.4 161 9-178 18-194 (195)
115 3a1s_A Iron(II) transport prot 99.9 1.5E-26 5.3E-31 174.7 9.7 157 12-178 3-167 (258)
116 3dpu_A RAB family protein; roc 99.9 1.7E-26 6E-31 191.1 9.4 166 10-181 37-211 (535)
117 2wjg_A FEOB, ferrous iron tran 99.9 6.8E-26 2.3E-30 163.3 11.3 157 13-180 6-171 (188)
118 2gj8_A MNME, tRNA modification 99.9 2.3E-26 7.8E-31 163.9 8.6 152 13-176 3-164 (172)
119 3b1v_A Ferrous iron uptake tra 99.9 2.9E-26 1E-30 174.2 9.3 154 13-177 2-163 (272)
120 4dhe_A Probable GTP-binding pr 99.9 1.6E-25 5.3E-30 165.7 12.0 166 9-180 24-213 (223)
121 1wf3_A GTP-binding protein; GT 99.9 2.6E-25 9E-30 171.3 12.9 167 12-184 5-179 (301)
122 3gee_A MNME, tRNA modification 99.9 1.4E-24 4.6E-29 176.4 13.0 156 13-177 232-397 (476)
123 3iby_A Ferrous iron transport 99.9 3.5E-25 1.2E-29 167.0 8.0 150 15-175 2-164 (256)
124 3k53_A Ferrous iron transport 99.9 4.4E-25 1.5E-29 168.1 8.5 158 13-180 2-168 (271)
125 3i8s_A Ferrous iron transport 99.9 1E-25 3.5E-30 171.8 4.3 157 13-179 2-170 (274)
126 2hjg_A GTP-binding protein ENG 99.9 8.9E-25 3E-29 176.7 8.6 162 12-181 173-352 (436)
127 1nrj_B SR-beta, signal recogni 99.9 4.1E-25 1.4E-29 163.0 5.7 148 11-164 9-170 (218)
128 4dcu_A GTP-binding protein ENG 99.9 1.9E-24 6.6E-29 175.7 9.3 165 11-183 192-374 (456)
129 1ega_A Protein (GTP-binding pr 99.9 1.9E-23 6.6E-28 161.1 12.7 165 13-184 7-181 (301)
130 3qq5_A Small GTP-binding prote 99.9 4.3E-25 1.5E-29 176.7 2.5 160 9-179 29-197 (423)
131 2e87_A Hypothetical protein PH 99.9 5.2E-23 1.8E-27 162.4 14.3 161 12-179 165-337 (357)
132 1xzp_A Probable tRNA modificat 99.9 1.4E-23 4.8E-28 170.6 9.5 152 13-177 242-404 (482)
133 3sjy_A Translation initiation 99.9 9.4E-23 3.2E-27 163.3 14.0 166 10-179 4-193 (403)
134 1mky_A Probable GTP-binding pr 99.9 2.2E-23 7.5E-28 168.7 10.4 153 15-179 2-167 (439)
135 2hjg_A GTP-binding protein ENG 99.9 5.1E-24 1.7E-28 172.3 6.4 154 15-179 4-166 (436)
136 1lnz_A SPO0B-associated GTP-bi 99.9 5.2E-23 1.8E-27 160.7 11.0 159 15-181 159-333 (342)
137 3lxx_A GTPase IMAP family memb 99.9 1.4E-22 4.8E-27 151.5 13.0 168 8-180 23-216 (239)
138 3cb4_D GTP-binding protein LEP 99.9 2.8E-22 9.6E-27 166.5 14.3 159 13-179 3-183 (599)
139 1s0u_A EIF-2-gamma, translatio 99.9 1.3E-21 4.5E-26 156.9 16.6 164 12-179 6-199 (408)
140 1cip_A Protein (guanine nucleo 99.9 3.5E-22 1.2E-26 156.5 13.0 118 61-179 192-345 (353)
141 2xtp_A GTPase IMAP family memb 99.9 1.1E-22 3.9E-27 153.9 9.7 165 10-180 18-210 (260)
142 2ywe_A GTP-binding protein LEP 99.9 7.4E-22 2.5E-26 163.8 14.9 161 11-179 3-185 (600)
143 1wb1_A Translation elongation 99.9 4.3E-22 1.5E-26 162.5 13.0 161 9-177 14-188 (482)
144 3geh_A MNME, tRNA modification 99.9 4.6E-23 1.6E-27 166.9 6.5 155 12-180 222-386 (462)
145 3j2k_7 ERF3, eukaryotic polype 99.9 1.8E-21 6.3E-26 157.2 15.5 156 10-170 13-217 (439)
146 1kk1_A EIF2gamma; initiation o 99.9 1.6E-21 5.5E-26 156.5 14.7 166 9-178 5-200 (410)
147 3p26_A Elongation factor 1 alp 99.9 1.9E-22 6.5E-27 165.0 8.4 152 12-167 31-227 (483)
148 3lxw_A GTPase IMAP family memb 99.9 1.3E-21 4.3E-26 147.0 11.9 167 12-181 19-211 (247)
149 3ohm_A Guanine nucleotide-bind 99.9 1.2E-21 4.1E-26 151.5 11.9 120 60-180 165-320 (327)
150 1mky_A Probable GTP-binding pr 99.9 6.7E-22 2.3E-26 160.0 10.8 162 12-181 178-358 (439)
151 4dcu_A GTP-binding protein ENG 99.9 1.9E-22 6.4E-27 164.0 7.4 160 8-178 17-185 (456)
152 1zun_B Sulfate adenylate trans 99.9 2.3E-21 7.9E-26 156.6 12.8 152 12-169 22-215 (434)
153 3t5d_A Septin-7; GTP-binding p 99.9 7.8E-22 2.7E-26 150.4 9.2 160 11-176 5-202 (274)
154 2qag_A Septin-2, protein NEDD5 99.9 2.8E-22 9.4E-27 158.2 6.3 164 12-182 35-237 (361)
155 2xtz_A Guanine nucleotide-bind 99.9 7.7E-21 2.6E-25 148.9 13.6 118 60-178 181-345 (354)
156 3tr5_A RF-3, peptide chain rel 99.9 6.9E-22 2.4E-26 162.4 7.9 121 9-135 8-149 (528)
157 2elf_A Protein translation elo 99.9 3.8E-21 1.3E-25 152.0 11.2 146 16-178 23-180 (370)
158 1jny_A EF-1-alpha, elongation 99.9 5.1E-22 1.8E-26 160.4 6.3 157 12-170 4-205 (435)
159 1d2e_A Elongation factor TU (E 99.8 3.6E-21 1.2E-25 153.8 10.7 159 13-177 2-194 (397)
160 2c78_A Elongation factor TU-A; 99.8 2.4E-21 8.1E-26 155.3 9.1 161 11-177 8-211 (405)
161 2qtf_A Protein HFLX, GTP-bindi 99.8 3.6E-20 1.2E-24 146.0 15.7 163 14-181 178-357 (364)
162 1zcb_A G alpha I/13; GTP-bindi 99.8 4.1E-21 1.4E-25 151.0 9.5 118 61-179 200-354 (362)
163 3izy_P Translation initiation 99.8 7.4E-23 2.5E-27 167.7 -0.4 158 13-177 3-167 (537)
164 3izq_1 HBS1P, elongation facto 99.8 1.9E-21 6.4E-26 162.5 7.6 152 12-168 165-362 (611)
165 4fid_A G protein alpha subunit 99.8 8E-21 2.7E-25 147.4 10.3 118 60-178 159-328 (340)
166 1g7s_A Translation initiation 99.8 1.2E-20 4E-25 156.9 11.8 157 13-178 4-218 (594)
167 2ged_A SR-beta, signal recogni 99.8 2.5E-21 8.7E-26 139.9 6.8 122 11-137 45-173 (193)
168 1r5b_A Eukaryotic peptide chai 99.8 2.2E-21 7.6E-26 157.8 5.2 156 12-169 41-243 (467)
169 3avx_A Elongation factor TS, e 99.8 4E-20 1.4E-24 160.9 11.4 161 11-177 293-485 (1289)
170 1f60_A Elongation factor EEF1A 99.8 2.4E-21 8.2E-26 157.3 2.3 152 12-168 5-202 (458)
171 1zo1_I IF2, translation initia 99.8 5.8E-22 2E-26 161.2 -1.7 155 12-174 2-163 (501)
172 1pui_A ENGB, probable GTP-bind 99.8 1.6E-19 5.3E-24 132.2 11.0 160 10-178 22-199 (210)
173 2aka_B Dynamin-1; fusion prote 99.8 2.5E-20 8.4E-25 143.7 6.3 159 11-174 23-249 (299)
174 3mca_A HBS1, elongation factor 99.8 5.2E-21 1.8E-25 159.4 1.6 151 11-166 174-371 (592)
175 2h5e_A Peptide chain release f 99.8 5.4E-19 1.9E-23 145.4 13.3 120 10-135 9-149 (529)
176 3def_A T7I23.11 protein; chlor 99.8 8.2E-19 2.8E-23 132.8 12.7 123 12-135 34-166 (262)
177 2dy1_A Elongation factor G; tr 99.8 1.9E-18 6.4E-23 146.0 13.9 117 11-133 6-139 (665)
178 1h65_A Chloroplast outer envel 99.8 3.7E-18 1.3E-22 129.8 13.6 124 12-136 37-170 (270)
179 1dar_A EF-G, elongation factor 99.8 2.6E-18 8.9E-23 145.6 13.8 120 9-134 7-143 (691)
180 2j69_A Bacterial dynamin-like 99.8 1.4E-18 4.9E-23 147.3 12.2 164 12-180 67-327 (695)
181 1udx_A The GTP-binding protein 99.8 8.9E-18 3.1E-22 134.1 14.4 160 15-181 158-328 (416)
182 1jwy_B Dynamin A GTPase domain 99.8 3.3E-18 1.1E-22 132.8 11.2 166 11-181 21-265 (315)
183 2qnr_A Septin-2, protein NEDD5 99.8 5.2E-19 1.8E-23 136.3 6.1 164 12-182 16-218 (301)
184 2xex_A Elongation factor G; GT 99.8 1E-17 3.5E-22 142.0 13.7 120 10-135 6-142 (693)
185 2qag_C Septin-7; cell cycle, c 99.7 4.4E-18 1.5E-22 135.9 10.0 160 12-176 29-225 (418)
186 3t34_A Dynamin-related protein 99.7 1.4E-18 4.8E-23 137.2 6.6 156 13-172 33-255 (360)
187 2rdo_7 EF-G, elongation factor 99.7 5E-17 1.7E-21 138.0 16.3 120 9-134 5-148 (704)
188 1wxq_A GTP-binding protein; st 99.7 2.4E-18 8.3E-23 137.0 7.2 84 15-98 1-114 (397)
189 1azs_C GS-alpha; complex (lyas 99.7 1.6E-17 5.4E-22 131.7 8.1 123 54-179 211-386 (402)
190 1u0l_A Probable GTPase ENGC; p 99.7 1.5E-17 5E-22 128.2 7.0 132 29-173 32-168 (301)
191 3vqt_A RF-3, peptide chain rel 99.7 2.4E-16 8.2E-21 130.3 11.9 121 9-135 26-167 (548)
192 2wsm_A Hydrogenase expression/ 99.7 1E-16 3.4E-21 118.1 8.1 154 13-179 29-215 (221)
193 3p32_A Probable GTPase RV1496/ 99.7 4.6E-17 1.6E-21 128.2 6.3 105 61-178 171-284 (355)
194 2hf9_A Probable hydrogenase ni 99.6 3E-18 1E-22 126.8 -2.7 153 13-178 37-224 (226)
195 1jal_A YCHF protein; nucleotid 99.6 7E-15 2.4E-19 115.1 16.0 143 15-160 3-239 (363)
196 2x2e_A Dynamin-1; nitration, h 99.6 1.5E-17 5.1E-22 131.0 0.5 158 12-174 29-254 (353)
197 1n0u_A EF-2, elongation factor 99.6 1.3E-15 4.5E-20 131.6 10.6 118 10-133 15-163 (842)
198 2qpt_A EH domain-containing pr 99.6 7.4E-16 2.5E-20 127.5 7.9 121 10-136 61-234 (550)
199 3j25_A Tetracycline resistance 99.6 6.1E-16 2.1E-20 130.2 5.0 114 15-134 3-133 (638)
200 2dby_A GTP-binding protein; GD 99.6 1.8E-14 6.2E-19 113.4 11.8 149 15-166 2-250 (368)
201 4fn5_A EF-G 1, elongation fact 99.6 3.7E-14 1.3E-18 120.8 14.3 124 4-133 3-150 (709)
202 1yrb_A ATP(GTP)binding protein 99.6 4.3E-15 1.5E-19 112.1 7.4 113 62-178 109-257 (262)
203 2www_A Methylmalonic aciduria 99.6 2.2E-14 7.4E-19 112.6 10.8 102 62-177 167-278 (349)
204 2p67_A LAO/AO transport system 99.5 2.9E-15 1E-19 117.3 4.8 104 61-177 148-260 (341)
205 4a9a_A Ribosome-interacting GT 99.5 9.2E-14 3.2E-18 109.4 10.7 155 12-170 70-240 (376)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 2.2E-13 7.7E-18 115.4 9.4 158 12-175 49-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.4 7.9E-13 2.7E-17 101.8 10.1 97 72-173 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 1.6E-13 5.4E-18 107.2 4.6 104 61-177 147-260 (337)
209 3l82_B F-box only protein 4; T 99.4 4.2E-13 1.4E-17 96.2 5.8 106 70-178 110-223 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 4.4E-11 1.5E-15 94.8 12.2 88 10-97 16-127 (392)
211 3l2o_B F-box only protein 4; s 99.3 4.9E-12 1.7E-16 95.0 5.7 107 69-178 194-308 (312)
212 2ohf_A Protein OLA1, GTP-bindi 99.2 6.6E-12 2.3E-16 99.3 5.6 91 10-100 18-131 (396)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 1.6E-11 5.6E-16 96.9 1.7 141 15-165 163-318 (369)
214 3h2y_A GTPase family protein; 99.0 8.2E-11 2.8E-15 92.9 0.5 135 15-159 161-311 (368)
215 2qag_B Septin-6, protein NEDD5 98.9 1.8E-09 6.2E-14 86.1 6.5 141 12-159 40-217 (427)
216 2j37_W Signal recognition part 98.9 2.3E-09 8E-14 87.5 6.7 151 12-175 99-310 (504)
217 3sop_A Neuronal-specific septi 98.9 7.7E-09 2.6E-13 78.2 9.2 136 14-156 2-178 (270)
218 3h2y_A GTPase family protein; 98.9 3.3E-09 1.1E-13 83.7 6.9 97 71-176 55-158 (368)
219 1tq4_A IIGP1, interferon-induc 98.8 2.6E-08 8.9E-13 79.4 10.7 160 13-181 68-256 (413)
220 1puj_A YLQF, conserved hypothe 98.8 3.8E-09 1.3E-13 80.4 5.0 59 12-73 118-176 (282)
221 3cnl_A YLQF, putative uncharac 98.8 2.5E-09 8.5E-14 80.5 3.1 57 15-74 100-156 (262)
222 3ec1_A YQEH GTPase; atnos1, at 98.8 4.1E-09 1.4E-13 83.2 4.1 97 71-176 57-160 (369)
223 1puj_A YLQF, conserved hypothe 98.7 1.6E-08 5.5E-13 76.9 6.6 99 67-177 4-105 (282)
224 3dm5_A SRP54, signal recogniti 98.5 2.2E-07 7.5E-12 74.6 8.1 86 62-159 183-274 (443)
225 1t9h_A YLOQ, probable GTPase E 98.4 3.5E-07 1.2E-11 70.2 4.6 89 78-170 79-169 (307)
226 1f5n_A Interferon-induced guan 98.3 6.5E-07 2.2E-11 74.4 6.4 63 12-74 36-103 (592)
227 3cnl_A YLQF, putative uncharac 98.3 3E-07 1E-11 69.1 3.8 93 69-174 4-97 (262)
228 3kl4_A SRP54, signal recogniti 98.3 7.7E-07 2.6E-11 71.3 4.8 91 61-165 179-277 (433)
229 2v3c_C SRP54, signal recogniti 98.2 3.2E-06 1.1E-10 67.9 6.6 85 61-158 180-272 (432)
230 1j8m_F SRP54, signal recogniti 98.1 2E-06 6.9E-11 65.8 4.2 92 61-167 180-280 (297)
231 3szr_A Interferon-induced GTP- 98.1 5.7E-06 1.9E-10 69.4 6.9 25 16-40 47-71 (608)
232 2rcn_A Probable GTPase ENGC; Y 98.0 2.7E-05 9.2E-10 60.9 8.3 86 81-171 126-212 (358)
233 3e70_C DPA, signal recognition 97.9 9.6E-06 3.3E-10 62.9 4.8 90 63-166 213-308 (328)
234 1bif_A 6-phosphofructo-2-kinas 97.9 6.3E-07 2.1E-11 73.0 -2.4 101 12-114 37-147 (469)
235 3q5d_A Atlastin-1; G protein, 97.8 3.3E-05 1.1E-09 62.1 6.7 25 12-36 65-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.6 3.6E-05 1.2E-09 54.3 3.1 22 16-37 2-23 (178)
237 2xxa_A Signal recognition part 97.5 0.00043 1.5E-08 55.6 8.5 84 61-157 183-273 (433)
238 1kgd_A CASK, peripheral plasma 97.5 5.6E-05 1.9E-09 53.3 2.9 22 16-37 7-28 (180)
239 3ney_A 55 kDa erythrocyte memb 97.5 6.5E-05 2.2E-09 53.8 3.1 33 5-37 10-42 (197)
240 1t9h_A YLOQ, probable GTPase E 97.5 4.9E-05 1.7E-09 58.3 2.4 24 15-38 174-197 (307)
241 1lvg_A Guanylate kinase, GMP k 97.4 6.7E-05 2.3E-09 53.8 2.9 21 16-36 6-26 (198)
242 2rcn_A Probable GTPase ENGC; Y 97.4 0.00012 4.2E-09 57.2 4.5 24 16-39 217-240 (358)
243 1zp6_A Hypothetical protein AT 97.4 9.6E-05 3.3E-09 52.4 3.0 24 14-37 9-32 (191)
244 3tr0_A Guanylate kinase, GMP k 97.4 9.4E-05 3.2E-09 53.0 2.9 22 16-37 9-30 (205)
245 3a00_A Guanylate kinase, GMP k 97.4 9.2E-05 3.2E-09 52.4 2.8 21 17-37 4-24 (186)
246 2yv5_A YJEQ protein; hydrolase 97.3 0.00048 1.6E-08 52.7 6.8 23 15-38 166-188 (302)
247 4gp7_A Metallophosphoesterase; 97.3 0.0001 3.4E-09 51.6 2.7 20 16-35 11-30 (171)
248 1znw_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 52.9 2.8 26 13-38 19-44 (207)
249 2cdn_A Adenylate kinase; phosp 97.3 0.00014 4.9E-09 52.0 3.2 32 5-36 11-42 (201)
250 1s96_A Guanylate kinase, GMP k 97.3 0.00012 4.2E-09 53.3 2.9 23 16-38 18-40 (219)
251 1z6g_A Guanylate kinase; struc 97.3 0.00013 4.5E-09 53.1 2.8 24 15-38 24-47 (218)
252 1ex7_A Guanylate kinase; subst 97.2 0.00017 5.7E-09 51.2 3.0 21 17-37 4-24 (186)
253 3tau_A Guanylate kinase, GMP k 97.2 0.00015 5.3E-09 52.3 2.9 23 16-38 10-32 (208)
254 3c8u_A Fructokinase; YP_612366 97.2 0.00015 5.2E-09 52.3 2.6 26 12-37 20-45 (208)
255 2ffh_A Protein (FFH); SRP54, s 97.2 0.0012 4E-08 52.9 7.8 86 62-159 181-272 (425)
256 1htw_A HI0065; nucleotide-bind 97.2 0.00019 6.6E-09 49.5 2.8 23 16-38 35-57 (158)
257 3tif_A Uncharacterized ABC tra 97.2 0.0002 6.7E-09 52.8 3.0 23 16-38 33-55 (235)
258 3lw7_A Adenylate kinase relate 97.2 0.00021 7E-09 49.6 3.0 19 16-34 3-21 (179)
259 2qor_A Guanylate kinase; phosp 97.2 0.00023 7.7E-09 51.2 3.0 23 15-37 13-35 (204)
260 1kag_A SKI, shikimate kinase I 97.2 0.00022 7.5E-09 49.6 2.9 23 15-37 5-27 (173)
261 2pcj_A ABC transporter, lipopr 97.1 0.00022 7.7E-09 52.1 2.9 23 16-38 32-54 (224)
262 2j41_A Guanylate kinase; GMP, 97.1 0.00022 7.5E-09 51.1 2.8 24 15-38 7-30 (207)
263 2bdt_A BH3686; alpha-beta prot 97.1 0.00023 7.7E-09 50.4 2.8 21 16-36 4-24 (189)
264 3asz_A Uridine kinase; cytidin 97.1 0.00026 9E-09 51.0 3.1 24 13-36 5-28 (211)
265 1ly1_A Polynucleotide kinase; 97.1 0.00031 1.1E-08 49.1 3.4 22 15-36 3-24 (181)
266 3kb2_A SPBC2 prophage-derived 97.1 0.00027 9.2E-09 49.0 3.1 21 16-36 3-23 (173)
267 2bbw_A Adenylate kinase 4, AK4 97.1 0.00029 9.9E-09 52.2 3.3 22 14-35 27-48 (246)
268 2onk_A Molybdate/tungstate ABC 97.1 0.00027 9.4E-09 52.2 3.1 23 16-38 26-48 (240)
269 4eun_A Thermoresistant glucoki 97.1 0.00026 9.1E-09 50.6 2.9 22 15-36 30-51 (200)
270 3fb4_A Adenylate kinase; psych 97.1 0.00028 9.6E-09 51.0 3.1 20 16-35 2-21 (216)
271 3sr0_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 50.7 3.1 20 16-35 2-21 (206)
272 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 50.9 3.1 20 16-35 2-21 (216)
273 1sgw_A Putative ABC transporte 97.1 0.0003 1E-08 51.1 3.0 23 16-38 37-59 (214)
274 3gfo_A Cobalt import ATP-bindi 97.1 0.00029 9.8E-09 53.2 3.0 23 16-38 36-58 (275)
275 2i3b_A HCR-ntpase, human cance 97.1 0.00027 9.2E-09 50.3 2.7 22 16-37 3-24 (189)
276 1b0u_A Histidine permease; ABC 97.1 0.00029 9.9E-09 52.8 3.0 23 16-38 34-56 (262)
277 2cbz_A Multidrug resistance-as 97.1 0.00034 1.2E-08 51.6 3.2 23 16-38 33-55 (237)
278 3ec2_A DNA replication protein 97.0 0.00026 9E-09 49.7 2.4 24 14-37 38-61 (180)
279 1knq_A Gluconate kinase; ALFA/ 97.0 0.00039 1.3E-08 48.5 3.3 22 15-36 9-30 (175)
280 1g6h_A High-affinity branched- 97.0 0.00032 1.1E-08 52.4 3.0 23 16-38 35-57 (257)
281 4g1u_C Hemin import ATP-bindin 97.0 0.00033 1.1E-08 52.6 3.0 23 16-38 39-61 (266)
282 1qhx_A CPT, protein (chloramph 97.0 0.00034 1.2E-08 48.9 3.0 21 16-36 5-25 (178)
283 1mv5_A LMRA, multidrug resista 97.0 0.00038 1.3E-08 51.5 3.2 23 16-38 30-52 (243)
284 3vaa_A Shikimate kinase, SK; s 97.0 0.00039 1.3E-08 49.7 3.2 23 14-36 25-47 (199)
285 2olj_A Amino acid ABC transpor 97.0 0.00035 1.2E-08 52.4 3.0 23 16-38 52-74 (263)
286 2pze_A Cystic fibrosis transme 97.0 0.00036 1.2E-08 51.2 3.0 23 16-38 36-58 (229)
287 2ff7_A Alpha-hemolysin translo 97.0 0.00038 1.3E-08 51.7 3.2 23 16-38 37-59 (247)
288 1ji0_A ABC transporter; ATP bi 97.0 0.00036 1.2E-08 51.6 3.0 23 16-38 34-56 (240)
289 1vpl_A ABC transporter, ATP-bi 97.0 0.00037 1.3E-08 52.0 3.0 23 16-38 43-65 (256)
290 2qi9_C Vitamin B12 import ATP- 97.0 0.00038 1.3E-08 51.7 3.0 23 16-38 28-50 (249)
291 2v9p_A Replication protein E1; 97.0 0.00038 1.3E-08 53.2 3.0 23 15-37 127-149 (305)
292 2if2_A Dephospho-COA kinase; a 97.0 0.00039 1.3E-08 49.8 3.0 22 15-36 2-23 (204)
293 3t61_A Gluconokinase; PSI-biol 97.0 0.00038 1.3E-08 49.8 2.9 22 15-36 19-40 (202)
294 2d2e_A SUFC protein; ABC-ATPas 97.0 0.0004 1.4E-08 51.7 3.0 22 16-37 31-52 (250)
295 1jjv_A Dephospho-COA kinase; P 97.0 0.00049 1.7E-08 49.3 3.5 22 15-36 3-24 (206)
296 2eyu_A Twitching motility prot 97.0 0.00037 1.3E-08 52.2 2.8 23 15-37 26-48 (261)
297 1nks_A Adenylate kinase; therm 97.0 0.00044 1.5E-08 48.8 3.1 21 16-36 3-23 (194)
298 3cm0_A Adenylate kinase; ATP-b 97.0 0.00056 1.9E-08 48.1 3.6 22 14-35 4-25 (186)
299 2zu0_C Probable ATP-dependent 97.0 0.00043 1.5E-08 52.0 3.1 22 16-37 48-69 (267)
300 1ukz_A Uridylate kinase; trans 97.0 0.00055 1.9E-08 48.9 3.6 25 11-35 12-36 (203)
301 2ghi_A Transport protein; mult 97.0 0.00045 1.6E-08 51.7 3.2 22 16-37 48-69 (260)
302 3tlx_A Adenylate kinase 2; str 97.0 0.00051 1.8E-08 50.8 3.4 24 12-35 27-50 (243)
303 2ixe_A Antigen peptide transpo 97.0 0.00042 1.4E-08 52.2 3.0 23 16-38 47-69 (271)
304 1np6_A Molybdopterin-guanine d 97.0 0.00045 1.5E-08 48.4 2.9 23 15-37 7-29 (174)
305 2ihy_A ABC transporter, ATP-bi 97.0 0.00048 1.6E-08 52.1 3.2 23 16-38 49-71 (279)
306 3trf_A Shikimate kinase, SK; a 96.9 0.00049 1.7E-08 48.4 3.1 21 15-35 6-26 (185)
307 3aez_A Pantothenate kinase; tr 96.9 0.0006 2.1E-08 52.4 3.8 27 11-37 87-113 (312)
308 1cke_A CK, MSSA, protein (cyti 96.9 0.00048 1.6E-08 50.1 3.1 22 15-36 6-27 (227)
309 3uie_A Adenylyl-sulfate kinase 96.9 0.00044 1.5E-08 49.5 2.8 25 13-37 24-48 (200)
310 2nq2_C Hypothetical ABC transp 96.9 0.00046 1.6E-08 51.4 3.0 23 16-38 33-55 (253)
311 2qt1_A Nicotinamide riboside k 96.9 0.00064 2.2E-08 48.8 3.7 27 11-37 18-44 (207)
312 3lnc_A Guanylate kinase, GMP k 96.9 0.00028 9.5E-09 51.7 1.7 22 16-37 29-51 (231)
313 1u0l_A Probable GTPase ENGC; p 96.9 0.00058 2E-08 52.2 3.5 24 16-39 171-194 (301)
314 1e4v_A Adenylate kinase; trans 96.9 0.00048 1.7E-08 49.8 3.0 21 16-36 2-22 (214)
315 3b85_A Phosphate starvation-in 96.9 0.00034 1.2E-08 50.6 2.1 22 16-37 24-45 (208)
316 3uc9_A Increased recombination 96.9 0.0013 4.5E-08 47.9 5.1 89 13-106 28-123 (233)
317 2yz2_A Putative ABC transporte 96.9 0.00048 1.6E-08 51.7 3.0 23 16-38 35-57 (266)
318 1kht_A Adenylate kinase; phosp 96.9 0.00055 1.9E-08 48.3 3.2 22 15-36 4-25 (192)
319 2jaq_A Deoxyguanosine kinase; 96.9 0.00055 1.9E-08 48.8 3.2 21 16-36 2-22 (205)
320 2rhm_A Putative kinase; P-loop 96.9 0.00058 2E-08 48.2 3.3 23 14-36 5-27 (193)
321 2ehv_A Hypothetical protein PH 96.9 0.00051 1.7E-08 50.7 3.0 21 15-35 31-51 (251)
322 4a74_A DNA repair and recombin 96.9 0.00048 1.6E-08 50.1 2.7 23 15-37 26-48 (231)
323 1aky_A Adenylate kinase; ATP:A 96.9 0.00056 1.9E-08 49.6 3.0 23 14-36 4-26 (220)
324 1tev_A UMP-CMP kinase; ploop, 96.9 0.00065 2.2E-08 48.0 3.3 22 14-35 3-24 (196)
325 2pjz_A Hypothetical protein ST 96.9 0.00061 2.1E-08 51.0 3.2 23 16-38 32-54 (263)
326 1via_A Shikimate kinase; struc 96.9 0.00053 1.8E-08 47.8 2.8 21 16-36 6-26 (175)
327 2bwj_A Adenylate kinase 5; pho 96.9 0.0003 1E-08 50.1 1.4 24 13-36 11-34 (199)
328 2f1r_A Molybdopterin-guanine d 96.9 0.00032 1.1E-08 49.1 1.5 22 16-37 4-25 (171)
329 2x8a_A Nuclear valosin-contain 96.9 0.00054 1.9E-08 51.7 2.8 21 17-37 47-67 (274)
330 1zd8_A GTP:AMP phosphotransfer 96.9 0.00059 2E-08 49.8 3.0 22 14-35 7-28 (227)
331 1y63_A LMAJ004144AAA protein; 96.8 0.00067 2.3E-08 47.8 3.1 24 14-37 10-33 (184)
332 1lw7_A Transcriptional regulat 96.8 0.00057 2E-08 53.7 2.9 24 14-37 170-193 (365)
333 2plr_A DTMP kinase, probable t 96.8 0.00079 2.7E-08 48.3 3.4 22 15-36 5-26 (213)
334 2yvu_A Probable adenylyl-sulfa 96.8 0.00093 3.2E-08 47.1 3.7 25 12-36 11-35 (186)
335 2jeo_A Uridine-cytidine kinase 96.8 0.00073 2.5E-08 50.0 3.2 25 12-36 23-47 (245)
336 3umf_A Adenylate kinase; rossm 96.8 0.00071 2.4E-08 49.2 3.0 20 16-35 31-50 (217)
337 3nh6_A ATP-binding cassette SU 96.8 0.00053 1.8E-08 52.5 2.4 22 16-37 82-103 (306)
338 1uj2_A Uridine-cytidine kinase 96.8 0.00079 2.7E-08 50.0 3.3 27 10-36 18-44 (252)
339 1gvn_B Zeta; postsegregational 96.8 0.00073 2.5E-08 51.3 3.1 25 12-36 31-55 (287)
340 3be4_A Adenylate kinase; malar 96.8 0.00072 2.5E-08 49.0 3.0 23 14-36 5-27 (217)
341 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0026 8.8E-08 51.2 6.3 63 12-74 65-152 (457)
342 2pt5_A Shikimate kinase, SK; a 96.8 0.00085 2.9E-08 46.3 3.2 21 16-36 2-22 (168)
343 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00069 2.3E-08 53.0 2.9 24 16-39 32-55 (359)
344 1ixz_A ATP-dependent metallopr 96.8 0.0007 2.4E-08 50.2 2.9 21 17-37 52-72 (254)
345 2xb4_A Adenylate kinase; ATP-b 96.8 0.0008 2.7E-08 49.0 3.1 20 16-35 2-21 (223)
346 1zak_A Adenylate kinase; ATP:A 96.8 0.00061 2.1E-08 49.5 2.5 22 14-35 5-26 (222)
347 2bbs_A Cystic fibrosis transme 96.8 0.00078 2.7E-08 51.2 3.1 23 16-38 66-88 (290)
348 3iij_A Coilin-interacting nucl 96.8 0.00078 2.7E-08 47.2 2.9 22 14-35 11-32 (180)
349 3tqc_A Pantothenate kinase; bi 96.7 0.00099 3.4E-08 51.4 3.5 26 11-36 89-114 (321)
350 1z47_A CYSA, putative ABC-tran 96.7 0.00082 2.8E-08 52.5 3.0 23 16-38 43-65 (355)
351 2kjq_A DNAA-related protein; s 96.7 0.00048 1.6E-08 47.0 1.5 22 16-37 38-59 (149)
352 1jbk_A CLPB protein; beta barr 96.7 0.001 3.5E-08 46.5 3.3 23 15-37 44-66 (195)
353 3jvv_A Twitching mobility prot 96.7 0.00078 2.7E-08 52.7 2.8 22 16-37 125-146 (356)
354 3tui_C Methionine import ATP-b 96.7 0.00088 3E-08 52.5 3.1 23 16-38 56-78 (366)
355 2yyz_A Sugar ABC transporter, 96.7 0.00087 3E-08 52.5 3.0 23 16-38 31-53 (359)
356 1qf9_A UMP/CMP kinase, protein 96.7 0.0011 3.9E-08 46.6 3.5 22 15-36 7-28 (194)
357 1odf_A YGR205W, hypothetical 3 96.7 0.0011 3.7E-08 50.4 3.5 25 11-35 28-52 (290)
358 2v54_A DTMP kinase, thymidylat 96.7 0.00095 3.2E-08 47.6 3.0 24 14-37 4-27 (204)
359 3rlf_A Maltose/maltodextrin im 96.7 0.0009 3.1E-08 52.7 3.1 23 16-38 31-53 (381)
360 2it1_A 362AA long hypothetical 96.7 0.00091 3.1E-08 52.4 3.1 23 16-38 31-53 (362)
361 1uf9_A TT1252 protein; P-loop, 96.7 0.0011 3.7E-08 47.2 3.3 25 13-37 7-31 (203)
362 2c95_A Adenylate kinase 1; tra 96.7 0.001 3.5E-08 47.1 3.1 22 14-35 9-30 (196)
363 2ze6_A Isopentenyl transferase 96.7 0.00095 3.2E-08 49.7 3.0 21 16-36 3-23 (253)
364 1xjc_A MOBB protein homolog; s 96.7 0.0011 3.7E-08 46.2 3.0 22 15-36 5-26 (169)
365 1ak2_A Adenylate kinase isoenz 96.7 0.0011 3.6E-08 48.7 3.1 24 13-36 15-38 (233)
366 1sq5_A Pantothenate kinase; P- 96.7 0.0011 3.9E-08 50.7 3.4 26 12-37 78-103 (308)
367 1rj9_A FTSY, signal recognitio 96.7 0.00093 3.2E-08 51.2 2.8 84 63-158 186-281 (304)
368 1v43_A Sugar-binding transport 96.7 0.001 3.4E-08 52.4 3.1 23 16-38 39-61 (372)
369 1g29_1 MALK, maltose transport 96.7 0.00099 3.4E-08 52.4 3.0 23 16-38 31-53 (372)
370 1e6c_A Shikimate kinase; phosp 96.6 0.0011 3.7E-08 46.0 3.0 21 16-36 4-24 (173)
371 2p5t_B PEZT; postsegregational 96.6 0.00073 2.5E-08 50.3 2.2 26 11-36 29-54 (253)
372 1rz3_A Hypothetical protein rb 96.6 0.0012 4.2E-08 47.2 3.3 25 12-36 20-44 (201)
373 2z0h_A DTMP kinase, thymidylat 96.6 0.0011 3.6E-08 47.0 2.9 21 16-36 2-22 (197)
374 1gtv_A TMK, thymidylate kinase 96.6 0.00045 1.5E-08 49.7 0.9 21 16-36 2-22 (214)
375 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4E-08 46.7 3.1 21 16-36 2-22 (195)
376 1in4_A RUVB, holliday junction 96.6 0.00098 3.4E-08 51.7 2.8 23 15-37 52-74 (334)
377 3b9q_A Chloroplast SRP recepto 96.6 0.001 3.5E-08 50.9 2.9 24 13-36 99-122 (302)
378 1nn5_A Similar to deoxythymidy 96.6 0.0011 3.8E-08 47.6 3.0 23 14-36 9-31 (215)
379 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.001 3.6E-08 51.5 3.0 23 16-38 173-195 (330)
380 2iyv_A Shikimate kinase, SK; t 96.6 0.0011 3.8E-08 46.5 2.9 21 16-36 4-24 (184)
381 2vli_A Antibiotic resistance p 96.6 0.0007 2.4E-08 47.4 1.8 23 14-36 5-27 (183)
382 3d31_A Sulfate/molybdate ABC t 96.6 0.00082 2.8E-08 52.4 2.3 23 16-38 28-50 (348)
383 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0013 4.4E-08 49.1 3.3 22 15-36 5-26 (260)
384 1iy2_A ATP-dependent metallopr 96.6 0.0011 3.7E-08 50.0 2.9 21 17-37 76-96 (278)
385 2wwf_A Thymidilate kinase, put 96.6 0.0012 4.2E-08 47.3 3.0 23 14-36 10-32 (212)
386 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.7E-08 45.3 3.2 21 15-35 8-28 (168)
387 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.4E-08 48.9 3.2 21 15-35 28-48 (252)
388 2gza_A Type IV secretion syste 96.6 0.0011 3.8E-08 52.0 2.9 23 15-37 176-198 (361)
389 2ewv_A Twitching motility prot 96.6 0.0012 4E-08 52.1 3.0 22 15-36 137-158 (372)
390 1vht_A Dephospho-COA kinase; s 96.6 0.0015 5.3E-08 47.2 3.4 23 14-36 4-26 (218)
391 3gd7_A Fusion complex of cysti 96.5 0.0013 4.5E-08 52.1 2.9 22 16-37 49-70 (390)
392 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0013 4.6E-08 47.7 2.8 22 16-37 25-46 (235)
393 1lv7_A FTSH; alpha/beta domain 96.5 0.0014 4.6E-08 48.7 2.9 24 14-37 45-68 (257)
394 1p9r_A General secretion pathw 96.5 0.0013 4.4E-08 52.6 2.8 22 16-37 169-190 (418)
395 2vp4_A Deoxynucleoside kinase; 96.5 0.0018 6E-08 47.4 3.4 26 12-37 18-43 (230)
396 2p65_A Hypothetical protein PF 96.5 0.0013 4.3E-08 46.0 2.4 24 14-37 43-66 (187)
397 1oxx_K GLCV, glucose, ABC tran 96.5 0.00081 2.8E-08 52.6 1.5 23 16-38 33-55 (353)
398 3kta_A Chromosome segregation 96.5 0.0015 5.1E-08 45.8 2.8 21 16-36 28-48 (182)
399 2oap_1 GSPE-2, type II secreti 96.5 0.0014 4.9E-08 53.8 3.0 24 15-38 261-284 (511)
400 2pez_A Bifunctional 3'-phospho 96.5 0.0016 5.5E-08 45.5 3.0 22 15-36 6-27 (179)
401 3r20_A Cytidylate kinase; stru 96.5 0.0016 5.6E-08 47.8 3.0 23 13-35 8-30 (233)
402 3bos_A Putative DNA replicatio 96.4 0.0018 6.3E-08 47.1 3.2 23 14-36 52-74 (242)
403 2w58_A DNAI, primosome compone 96.4 0.0018 6.2E-08 46.1 3.1 23 15-37 55-77 (202)
404 2f6r_A COA synthase, bifunctio 96.4 0.0019 6.3E-08 48.9 3.2 24 12-35 73-96 (281)
405 3n70_A Transport activator; si 96.4 0.0029 9.8E-08 42.7 3.8 26 13-38 23-48 (145)
406 2og2_A Putative signal recogni 96.4 0.0017 5.9E-08 50.8 2.9 24 13-36 156-179 (359)
407 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0015 5.1E-08 52.9 2.5 23 15-37 139-161 (460)
408 1cr0_A DNA primase/helicase; R 96.3 0.0018 6.2E-08 49.2 2.7 22 16-37 37-58 (296)
409 3nwj_A ATSK2; P loop, shikimat 96.3 0.0019 6.4E-08 48.0 2.7 22 15-36 49-70 (250)
410 1m7g_A Adenylylsulfate kinase; 96.3 0.0021 7.1E-08 46.3 2.9 24 13-36 24-47 (211)
411 2obl_A ESCN; ATPase, hydrolase 96.3 0.0021 7.1E-08 50.1 3.0 24 15-38 72-95 (347)
412 2yhs_A FTSY, cell division pro 96.3 0.0019 6.6E-08 52.5 2.9 24 13-36 292-315 (503)
413 2cvh_A DNA repair and recombin 96.3 0.0021 7.1E-08 46.3 2.8 21 16-36 22-42 (220)
414 4eaq_A DTMP kinase, thymidylat 96.3 0.0022 7.5E-08 47.0 3.0 25 13-37 25-49 (229)
415 1n0w_A DNA repair protein RAD5 96.3 0.0022 7.4E-08 47.0 2.9 22 16-37 26-47 (243)
416 1nij_A Hypothetical protein YJ 96.3 0.0014 4.8E-08 50.5 1.9 23 16-38 6-28 (318)
417 1tue_A Replication protein E1; 96.3 0.0018 6.1E-08 46.5 2.3 21 16-36 60-80 (212)
418 1ltq_A Polynucleotide kinase; 96.3 0.0022 7.6E-08 48.7 3.0 22 15-36 3-24 (301)
419 2grj_A Dephospho-COA kinase; T 96.3 0.0029 9.9E-08 45.0 3.3 24 13-36 11-34 (192)
420 1p5z_B DCK, deoxycytidine kina 96.3 0.0017 5.9E-08 48.5 2.2 26 11-36 21-46 (263)
421 3b9p_A CG5977-PA, isoform A; A 96.3 0.0022 7.5E-08 48.6 2.8 24 14-37 54-77 (297)
422 3h4m_A Proteasome-activating n 96.2 0.0023 7.9E-08 48.2 2.8 25 13-37 50-74 (285)
423 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.003 1E-07 43.0 3.0 19 17-35 26-44 (149)
424 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0026 8.8E-08 47.2 3.0 24 13-36 38-61 (262)
425 3t15_A Ribulose bisphosphate c 96.2 0.0027 9.3E-08 48.3 3.1 26 12-37 34-59 (293)
426 1svm_A Large T antigen; AAA+ f 96.2 0.0024 8.3E-08 50.3 2.8 24 13-36 168-191 (377)
427 2chg_A Replication factor C sm 96.2 0.0028 9.6E-08 45.4 3.0 21 16-36 40-60 (226)
428 3cf0_A Transitional endoplasmi 96.2 0.0025 8.7E-08 48.6 2.8 24 14-37 49-72 (301)
429 1njg_A DNA polymerase III subu 96.2 0.0029 9.8E-08 45.9 3.0 21 16-36 47-67 (250)
430 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.014 4.8E-07 45.8 7.1 21 14-35 24-44 (365)
431 3gmt_A Adenylate kinase; ssgci 96.2 0.0033 1.1E-07 46.0 3.2 22 14-35 8-29 (230)
432 3euj_A Chromosome partition pr 96.1 0.0031 1.1E-07 51.3 2.9 22 15-36 30-51 (483)
433 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0049 1.7E-07 51.0 4.1 23 16-38 49-71 (538)
434 1l8q_A Chromosomal replication 96.1 0.0031 1E-07 48.5 2.8 24 14-37 37-60 (324)
435 3co5_A Putative two-component 96.1 0.0021 7.3E-08 43.3 1.7 24 14-37 27-50 (143)
436 3syl_A Protein CBBX; photosynt 96.1 0.0039 1.3E-07 47.5 3.3 23 13-35 66-88 (309)
437 1d2n_A N-ethylmaleimide-sensit 96.1 0.0047 1.6E-07 46.2 3.7 26 12-37 62-87 (272)
438 2dpy_A FLII, flagellum-specifi 96.0 0.0034 1.2E-07 50.5 3.0 24 15-38 158-181 (438)
439 3b60_A Lipid A export ATP-bind 96.0 0.0035 1.2E-07 52.4 3.2 23 16-38 371-393 (582)
440 3zvl_A Bifunctional polynucleo 96.0 0.0045 1.6E-07 49.5 3.7 24 13-36 257-280 (416)
441 3ozx_A RNAse L inhibitor; ATP 96.0 0.0047 1.6E-07 51.0 3.8 23 16-38 27-49 (538)
442 1nlf_A Regulatory protein REPA 96.0 0.0036 1.2E-07 47.1 2.7 21 16-36 32-52 (279)
443 4b4t_K 26S protease regulatory 96.0 0.0037 1.3E-07 50.1 2.9 25 13-37 205-229 (428)
444 3b5x_A Lipid A export ATP-bind 96.0 0.004 1.4E-07 52.0 3.2 23 16-38 371-393 (582)
445 4b4t_M 26S protease regulatory 96.0 0.0038 1.3E-07 50.1 2.9 26 12-37 213-238 (434)
446 1ofh_A ATP-dependent HSL prote 96.0 0.004 1.4E-07 47.3 3.0 23 14-36 50-72 (310)
447 3j16_B RLI1P; ribosome recycli 96.0 0.0054 1.8E-07 51.4 3.9 23 16-38 105-127 (608)
448 1q3t_A Cytidylate kinase; nucl 95.9 0.0045 1.6E-07 45.3 3.1 26 11-36 13-38 (236)
449 3ake_A Cytidylate kinase; CMP 95.9 0.0048 1.6E-07 44.0 3.1 21 16-36 4-24 (208)
450 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0042 1.4E-07 47.9 2.9 24 14-37 45-68 (322)
451 4b4t_L 26S protease subunit RP 95.9 0.0042 1.4E-07 49.8 2.9 26 12-37 213-238 (437)
452 1sxj_E Activator 1 40 kDa subu 95.9 0.0035 1.2E-07 48.7 2.3 20 17-36 39-58 (354)
453 2px0_A Flagellar biosynthesis 95.9 0.0043 1.5E-07 47.3 2.7 86 61-158 182-273 (296)
454 3ozx_A RNAse L inhibitor; ATP 95.9 0.0045 1.5E-07 51.2 3.0 24 16-39 296-319 (538)
455 2qby_A CDC6 homolog 1, cell di 95.9 0.0042 1.4E-07 48.5 2.8 24 14-37 45-68 (386)
456 1sxj_C Activator 1 40 kDa subu 95.9 0.0043 1.5E-07 48.1 2.8 22 16-37 48-69 (340)
457 1c9k_A COBU, adenosylcobinamid 95.8 0.0054 1.8E-07 43.1 2.9 21 17-37 2-22 (180)
458 4fcw_A Chaperone protein CLPB; 95.8 0.006 2.1E-07 46.4 3.5 23 15-37 48-70 (311)
459 2dr3_A UPF0273 protein PH0284; 95.8 0.005 1.7E-07 45.1 2.9 21 16-36 25-45 (247)
460 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0052 1.8E-07 50.8 3.3 23 16-38 314-336 (538)
461 3eie_A Vacuolar protein sortin 95.8 0.0051 1.8E-07 47.3 3.1 24 14-37 51-74 (322)
462 4b4t_J 26S protease regulatory 95.8 0.0046 1.6E-07 49.0 2.8 26 12-37 180-205 (405)
463 3bk7_A ABC transporter ATP-bin 95.8 0.0072 2.5E-07 50.7 4.1 23 16-38 119-141 (607)
464 4a82_A Cystic fibrosis transme 95.8 0.0035 1.2E-07 52.3 2.1 23 16-38 369-391 (578)
465 3bk7_A ABC transporter ATP-bin 95.8 0.0056 1.9E-07 51.3 3.3 23 16-38 384-406 (607)
466 3crm_A TRNA delta(2)-isopenten 95.8 0.0055 1.9E-07 47.2 3.0 22 15-36 6-27 (323)
467 1vma_A Cell division protein F 95.8 0.0054 1.8E-07 47.0 2.9 87 62-160 187-285 (306)
468 1fnn_A CDC6P, cell division co 95.8 0.0056 1.9E-07 48.0 3.1 22 16-37 46-67 (389)
469 2qmh_A HPR kinase/phosphorylas 95.8 0.0049 1.7E-07 44.0 2.4 23 15-37 35-57 (205)
470 2yl4_A ATP-binding cassette SU 95.7 0.0036 1.2E-07 52.4 2.0 23 16-38 372-394 (595)
471 3qf4_B Uncharacterized ABC tra 95.7 0.0041 1.4E-07 52.1 2.2 23 16-38 383-405 (598)
472 3d3q_A TRNA delta(2)-isopenten 95.7 0.0059 2E-07 47.3 2.9 22 15-36 8-29 (340)
473 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0073 2.5E-07 47.1 3.4 23 13-35 23-45 (359)
474 1pzn_A RAD51, DNA repair and r 95.7 0.0055 1.9E-07 47.8 2.7 23 15-37 132-154 (349)
475 3te6_A Regulatory protein SIR3 95.7 0.0051 1.7E-07 47.3 2.5 26 12-37 43-68 (318)
476 1sxj_D Activator 1 41 kDa subu 95.7 0.0058 2E-07 47.3 2.8 21 17-37 61-81 (353)
477 3uk6_A RUVB-like 2; hexameric 95.7 0.0063 2.2E-07 47.5 3.0 22 15-36 71-92 (368)
478 2r62_A Cell division protease 95.7 0.0024 8.3E-08 47.6 0.6 21 16-36 46-66 (268)
479 2qgz_A Helicase loader, putati 95.6 0.0067 2.3E-07 46.4 3.1 23 14-36 152-174 (308)
480 3j16_B RLI1P; ribosome recycli 95.6 0.0063 2.2E-07 51.0 3.1 23 17-39 381-403 (608)
481 3qf4_A ABC transporter, ATP-bi 95.6 0.0048 1.7E-07 51.6 2.4 23 16-38 371-393 (587)
482 2qp9_X Vacuolar protein sortin 95.6 0.0062 2.1E-07 47.6 2.8 24 14-37 84-107 (355)
483 2bjv_A PSP operon transcriptio 95.6 0.0072 2.5E-07 45.0 3.0 25 14-38 29-53 (265)
484 3pxg_A Negative regulator of g 95.6 0.006 2.1E-07 49.5 2.6 22 15-36 202-223 (468)
485 3pfi_A Holliday junction ATP-d 95.6 0.007 2.4E-07 46.7 2.9 24 14-37 55-78 (338)
486 4b4t_I 26S protease regulatory 95.6 0.0068 2.3E-07 48.4 2.8 26 12-37 214-239 (437)
487 3hws_A ATP-dependent CLP prote 95.5 0.0072 2.4E-07 47.3 3.0 25 13-37 50-74 (363)
488 3m6a_A ATP-dependent protease 95.5 0.0065 2.2E-07 50.3 2.8 23 15-37 109-131 (543)
489 3exa_A TRNA delta(2)-isopenten 95.5 0.0077 2.6E-07 46.1 3.0 22 16-37 5-26 (322)
490 1um8_A ATP-dependent CLP prote 95.5 0.0073 2.5E-07 47.5 3.0 24 14-37 72-95 (376)
491 3qks_A DNA double-strand break 95.5 0.0085 2.9E-07 42.9 3.0 19 17-35 26-44 (203)
492 2z4s_A Chromosomal replication 95.5 0.0068 2.3E-07 48.8 2.8 23 14-36 130-152 (440)
493 2dhr_A FTSH; AAA+ protein, hex 95.5 0.0068 2.3E-07 49.6 2.8 22 16-37 66-87 (499)
494 2v1u_A Cell division control p 95.5 0.0062 2.1E-07 47.6 2.5 24 13-36 43-66 (387)
495 2ce7_A Cell division protein F 95.5 0.0072 2.4E-07 49.1 2.9 23 15-37 50-72 (476)
496 3a8t_A Adenylate isopentenyltr 95.5 0.0079 2.7E-07 46.5 2.9 21 16-36 42-62 (339)
497 3d8b_A Fidgetin-like protein 1 95.5 0.0077 2.6E-07 47.1 2.9 25 13-37 116-140 (357)
498 2r44_A Uncharacterized protein 95.5 0.006 2E-07 47.0 2.2 21 16-36 48-68 (331)
499 2h92_A Cytidylate kinase; ross 95.4 0.0079 2.7E-07 43.3 2.6 22 15-36 4-25 (219)
500 1azs_C GS-alpha; complex (lyas 95.4 0.011 3.7E-07 47.0 3.5 23 12-34 38-60 (402)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.6e-42 Score=251.93 Aligned_cols=199 Identities=35% Similarity=0.586 Sum_probs=142.9
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.++.+.+||+|+|++|||||||+++|..+.|...+. |.+.++....+..++..+.+.||||+|++.+..++..+++.++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 445677999999999999999999999999877654 8888888888899999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++++|||++++.+|+.+.. |+..+.... ..++|++|||||+|+.+.+.+..++++.++..++++|++|||++|.||++
T Consensus 88 ~~ilv~di~~~~Sf~~i~~-~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred EEEEEeecchhHHHHHHHH-HHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence 9999999999999999998 766666543 46799999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028353 168 CFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
+|..|++.+.+........... .......+++++++.+++||
T Consensus 166 ~F~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~C~ 207 (216)
T 4dkx_A 166 LFRRVAAALPGMESTQDRSRED-MIDIKLEKPQEQPVSEGGCS 207 (216)
T ss_dssp HHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHhhhccccccccc-ccccccCCCCCCCCCCCCCc
Confidence 9999999987655443322221 12223344455556667774
No 2
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=223.93 Aligned_cols=178 Identities=34% Similarity=0.526 Sum_probs=147.7
Q ss_pred CCCCcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028353 1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT 79 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (210)
|.+......+....+||+|+|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+
T Consensus 1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence 44555555666778999999999999999999999988766555 554443 4567788888999999999999999999
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
..+++.+|++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 158 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence 999999999999999999999999887 7777776655568999999999999877778888899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 028353 160 KTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++|.|++++|++|++.+.+..
T Consensus 159 ~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcc
Confidence 999999999999999997653
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=6.2e-36 Score=219.29 Aligned_cols=171 Identities=51% Similarity=0.846 Sum_probs=151.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.++.+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 467899999999999999999999998886554 4778788777888899999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 85 ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999888 877776543 4578999999999998777788888899999999999999999999999999
Q ss_pred HHHHHHHHcCCCcc
Q 028353 170 EELVLKILDTPSLL 183 (210)
Q Consensus 170 ~~l~~~~~~~~~~~ 183 (210)
.++.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 163 LTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998765543
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=220.00 Aligned_cols=174 Identities=43% Similarity=0.735 Sum_probs=144.1
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
...+..+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 44578899999999999999999999999887554 47777777777888998899999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++|+|||++++.++..+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 88 ~vilV~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNH-WLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHH-HHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 877776643 45789999999999977667778888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccc
Q 028353 168 CFEELVLKILDTPSLLA 184 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~ 184 (210)
+|++|.+.+.+......
T Consensus 166 l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 166 AFEELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999987665543
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.5e-34 Score=207.07 Aligned_cols=175 Identities=53% Similarity=0.880 Sum_probs=153.3
Q ss_pred ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028353 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84 (210)
Q Consensus 6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (210)
......+..+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 8 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (196)
T 3tkl_A 8 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 87 (196)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred hcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence 33455578899999999999999999999998876554 47777888888888999999999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (210)
.+|++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred hCCEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 9999999999999999999988 877776643 45789999999999988888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 028353 165 VQQCFEELVLKILDTPSL 182 (210)
Q Consensus 165 i~~~~~~l~~~~~~~~~~ 182 (210)
++++|.+|.+.+.+....
T Consensus 166 v~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 166 VEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999876543
No 6
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=205.32 Aligned_cols=167 Identities=29% Similarity=0.429 Sum_probs=136.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccchhhcccCccEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLTSSYYRGAQGI 89 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~ 89 (210)
.+.+||+++|++|||||||+++|.+..+...+++.+.++....+.+++..+.+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999998877777788887777888899999999999999887 556677788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999887 77766654344579999999999998777788888888999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028353 170 EELVLKILDT 179 (210)
Q Consensus 170 ~~l~~~~~~~ 179 (210)
++|.+.+.+.
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 7
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.1e-34 Score=212.58 Aligned_cols=169 Identities=36% Similarity=0.635 Sum_probs=143.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4578999999999999999999999988765544 777778778888888889999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCeEEEEccCCCCCH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVNV 165 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 165 (210)
|+|+|++++.++..+.. |+..+..... ..++|+++|+||+|+. ...+..+++..++. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999999877 7766655432 1468999999999997 44556677788877 56789999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 028353 166 QQCFEELVLKILDTPS 181 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~~ 181 (210)
+++|++|.+.+.+...
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 163 EQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987554
No 8
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=3.1e-34 Score=207.11 Aligned_cols=169 Identities=33% Similarity=0.513 Sum_probs=144.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||+++|.++.+...+.....+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999998887666533345555667789999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|||++++.++..+.. |...+.......+.|+++|+||+|+. ......+.+..++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999888 77777766666789999999999996 4456677888999999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028353 172 LVLKILDTPSL 182 (210)
Q Consensus 172 l~~~~~~~~~~ 182 (210)
+.+.+.+....
T Consensus 160 l~~~~~~~~~~ 170 (189)
T 4dsu_A 160 LVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99999766543
No 9
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=6.1e-34 Score=204.43 Aligned_cols=170 Identities=29% Similarity=0.423 Sum_probs=146.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+++|++|+|||||+++|.++.+...+. +.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 3568999999999999999999999888766554 666665 66678899999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||++++.+++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 99999999999999988 77777665556689999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028353 170 EELVLKILDTPSL 182 (210)
Q Consensus 170 ~~l~~~~~~~~~~ 182 (210)
.++++.+.+....
T Consensus 161 ~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 161 RRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHhcCC
Confidence 9999999876643
No 10
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=8.5e-34 Score=204.03 Aligned_cols=169 Identities=33% Similarity=0.502 Sum_probs=149.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|||||||+++|.++.+...+. +.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 345678999999999999999999999888766555 555555 666788999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC-CCCCHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~ 166 (210)
++++|||++++.++..+.. |...+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 9999999999999999988 77777665556789999999999998888888999999999999999999999 999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+++.+.+.++
T Consensus 171 ~l~~~l~~~i~~q 183 (183)
T 3kkq_A 171 KTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988653
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=209.81 Aligned_cols=173 Identities=40% Similarity=0.767 Sum_probs=143.7
Q ss_pred ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028353 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84 (210)
Q Consensus 6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (210)
.++.+.++.+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence 34556678899999999999999999999998876544 37777777777888888899999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (210)
.+|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...++ +++++||+++.
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred hCCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 9999999999999999999887 877776643 46799999999999977667788889999999999 89999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028353 164 NVQQCFEELVLKILDTP 180 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~ 180 (210)
|++++|.+|.+.+.+..
T Consensus 179 gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 179 NVEEAFLRVATELIMRH 195 (201)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987643
No 12
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-33 Score=201.49 Aligned_cols=170 Identities=44% Similarity=0.824 Sum_probs=140.9
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
...+..+||+++|++|+|||||+++|.++.+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 345778999999999999999999999988753 334777777777778899999999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 162 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999887 777776643 3678999999999998777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028353 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.+..
T Consensus 163 ~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 163 LAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997654
No 13
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.7e-33 Score=204.49 Aligned_cols=174 Identities=29% Similarity=0.547 Sum_probs=147.0
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY 83 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (210)
..........+||+++|++|+|||||+++|.++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..++
T Consensus 14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 92 (194)
T 3reg_A 14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92 (194)
T ss_dssp -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence 3444556788999999999999999999999998865554 6665554 4577889999999999999999999999999
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhCCe-EEEEccC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE--RVVTKKEGINFAREYGCL-FIECSAK 160 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~ 160 (210)
+.+|++++|||++++.++..+...|...+... ..++|+++|+||+|+... +.+..+++..++...+++ ++++||+
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 99999999999999999999855588888764 457899999999999653 667888899999999998 9999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 028353 161 TRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++.|++++|+++.+.+.++..
T Consensus 171 ~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999987654
No 14
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=204.51 Aligned_cols=174 Identities=61% Similarity=0.961 Sum_probs=151.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....+||+|+|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 4456799999999999999999999998876544 477888888888889999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|+|++++.++..+.. |+..+..+....++|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++
T Consensus 91 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 999999999999999887 88777765545679999999999994 4456677888999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcccc
Q 028353 169 FEELVLKILDTPSLLAE 185 (210)
Q Consensus 169 ~~~l~~~~~~~~~~~~~ 185 (210)
|++|.+.+.+.+.....
T Consensus 169 ~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 169 FEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHhhhhhhcc
Confidence 99999999877655443
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.1e-34 Score=207.11 Aligned_cols=170 Identities=42% Similarity=0.800 Sum_probs=149.4
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
+.+.++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 345578899999999999999999999998886544 4777788778888899999999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPE-WLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999887 877776643 4578999999999997766777888889999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|.++.+.+.+.
T Consensus 178 ~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 178 KLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=9.8e-34 Score=202.67 Aligned_cols=168 Identities=51% Similarity=0.855 Sum_probs=148.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+.++.+||+++|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 345678999999999999999999999998766554 7777887888888999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..++++.++...+++++++||+++.|+++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEeCcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 777776543 45789999999999977677788889999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 028353 168 CFEELVLKILD 178 (210)
Q Consensus 168 ~~~~l~~~~~~ 178 (210)
+|+++.+.+.+
T Consensus 168 l~~~l~~~i~~ 178 (179)
T 1z0f_A 168 AFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999998854
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.1e-34 Score=202.42 Aligned_cols=164 Identities=30% Similarity=0.405 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.+||+++|++|||||||+++|.+..+....++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999999887766666666655 455678999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028353 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
|++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999999999988 666666544456899999999999988888888999999999999999999999999999999999
Q ss_pred HHHHcC
Q 028353 174 LKILDT 179 (210)
Q Consensus 174 ~~~~~~ 179 (210)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988653
No 18
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.3e-33 Score=202.98 Aligned_cols=171 Identities=47% Similarity=0.827 Sum_probs=150.1
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (210)
.+...++.+||+|+|++|+|||||+++|+++.+...+ ++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 3445567899999999999999999999999876544 477777777778888899999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (210)
+|++++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|+
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999887 777776642 457899999999999776777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028353 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
+++|++|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 19
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-34 Score=208.80 Aligned_cols=169 Identities=30% Similarity=0.434 Sum_probs=139.5
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....++|+++|++|||||||+++|.++.+...+. +.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 34567999999999999999999999988765444 554443 3446678888999999999999999899999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
+++|||++++.++..+.. |...+..... ..++|+++|+||+|+.. +.+..+++..++...+++++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence 999999999999998887 5555544322 24689999999999964 45667778888889999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028353 168 CFEELVLKILDTPS 181 (210)
Q Consensus 168 ~~~~l~~~~~~~~~ 181 (210)
+|+++.+.+.++..
T Consensus 161 l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 161 LFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHCSSSCE
T ss_pred HHHHHHHHHhhhhc
Confidence 99999998865543
No 20
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.5e-33 Score=204.21 Aligned_cols=171 Identities=49% Similarity=0.836 Sum_probs=148.6
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (210)
........+||+|+|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 34555788999999999999999999999988866544 77777777778889999999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (210)
+|++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999888 777776543 457899999999999776777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028353 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
+++|++|.+.+.++
T Consensus 172 ~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 172 EEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.7e-33 Score=201.97 Aligned_cols=171 Identities=39% Similarity=0.650 Sum_probs=147.1
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
.......+||+++|++|+|||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 445677899999999999999999999998886655 4777778778888888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|+|++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999999999998887 777776543 4578999999999998777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028353 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|.+|.+.+.+.+
T Consensus 164 ~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 164 EIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHTCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998875543
No 22
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5.1e-34 Score=209.96 Aligned_cols=168 Identities=30% Similarity=0.593 Sum_probs=140.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|+|||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 467999999999999999999999988765544 555444 445677888899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--------ecHHHHHHHHHHhCC-eEEEEccCC
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--------VTKKEGINFAREYGC-LFIECSAKT 161 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (210)
+|||++++.++..+...|+..+..+. .++|+++|+||+|+..... +..+++..++...+. +++++||++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 99999999999998755888887653 4789999999999965543 367788889999896 899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCc
Q 028353 162 RVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~~ 182 (210)
+.|++++|+++++.+.+....
T Consensus 164 g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999876543
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=200.53 Aligned_cols=168 Identities=50% Similarity=0.861 Sum_probs=147.9
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+.+..+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 4568899999999999999999999998876544 477777888888889999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|+|++++.++..+.. |+..+... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999887 77777654 357899999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028353 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|+++.+.+.+..
T Consensus 162 ~~~l~~~~~~~~ 173 (181)
T 3tw8_B 162 FNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.5e-33 Score=199.94 Aligned_cols=165 Identities=40% Similarity=0.681 Sum_probs=145.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+++|++|+|||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 457899999999999999999999998876655 4778888778888899999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 83 IVVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999998887 776666542 4579999999999997666777888899999999999999999999999999
Q ss_pred HHHHHHHH
Q 028353 170 EELVLKIL 177 (210)
Q Consensus 170 ~~l~~~~~ 177 (210)
++|.+.+.
T Consensus 161 ~~i~~~~~ 168 (170)
T 1r2q_A 161 MAIAKKLP 168 (170)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHHh
Confidence 99998764
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.5e-33 Score=200.22 Aligned_cols=166 Identities=37% Similarity=0.717 Sum_probs=139.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.++.+||+++|++|+|||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 467899999999999999999999988876544 4777777777788888899999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999887 777766533 3468999999999997777778888999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 028353 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
+++.+.+.+
T Consensus 161 ~~l~~~~~~ 169 (170)
T 1z08_A 161 LDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998865
No 26
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.5e-33 Score=200.04 Aligned_cols=165 Identities=27% Similarity=0.369 Sum_probs=132.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQGIIM 91 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~ 91 (210)
.+||+++|++|||||||+++|.+..+..... +.+.+.....+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999777654443 555666777778899999999999999988776 67777889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|||++++.++..+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 999999999999988 6666665554558999999999999877888889999999999999999999999999999999
Q ss_pred HHHHHHcC
Q 028353 172 LVLKILDT 179 (210)
Q Consensus 172 l~~~~~~~ 179 (210)
+.+.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988764
No 27
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=9.1e-34 Score=203.88 Aligned_cols=167 Identities=48% Similarity=0.899 Sum_probs=119.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 467899999999999999999999988775443 3667677777778889899999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999887 877776542 4578999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028353 170 EELVLKILDT 179 (210)
Q Consensus 170 ~~l~~~~~~~ 179 (210)
.++.+.+.+.
T Consensus 163 ~~l~~~i~~~ 172 (183)
T 2fu5_C 163 FTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 28
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=205.06 Aligned_cols=171 Identities=27% Similarity=0.367 Sum_probs=141.5
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCcc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQ 87 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d 87 (210)
+....+||+++|++|||||||+++|.+..+. ...++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 3457799999999999999999999755432 2233445555566677899999999999999987665 6777889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++++|||++++.+|..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 9999999999999999988 777776554445799999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028353 168 CFEELVLKILDTPS 181 (210)
Q Consensus 168 ~~~~l~~~~~~~~~ 181 (210)
+|.++++.+.+...
T Consensus 178 lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 178 LFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999876543
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=4.2e-33 Score=200.82 Aligned_cols=169 Identities=47% Similarity=0.811 Sum_probs=149.3
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+.++.+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 3467899999999999999999999998886554 477777877888889988999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 86 ALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 999999999999999887 777766543 467999999999999766777788889999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028353 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|+++.+.+.+..
T Consensus 164 ~~~l~~~~~~~~ 175 (186)
T 2bme_A 164 FVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-33 Score=202.83 Aligned_cols=168 Identities=48% Similarity=0.850 Sum_probs=149.2
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
..++.+||+|+|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 3467899999999999999999999999876544 477878877888889999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 84 ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 999999999999998887 777776543 457899999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028353 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
|++|.+.+.+.
T Consensus 162 ~~~l~~~i~~~ 172 (203)
T 1zbd_A 162 FERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 31
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=202.21 Aligned_cols=169 Identities=41% Similarity=0.731 Sum_probs=149.1
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
++.++.+||+|+|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 445678999999999999999999999998876554 7788887788888899999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++|+|||++++.++..+.. |+..+... ...++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVER-WLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 77777653 245789999999999977667778888999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028353 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|.+|.+.+.+.
T Consensus 178 l~~~l~~~i~~~ 189 (193)
T 2oil_A 178 AFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 32
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=206.84 Aligned_cols=171 Identities=29% Similarity=0.433 Sum_probs=141.2
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....+||+|+|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 44578999999999999999999999998876655 555555 5556667778999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 999999999999999987 7777766555668999999999999877888888999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028353 169 FEELVLKILDTPSL 182 (210)
Q Consensus 169 ~~~l~~~~~~~~~~ 182 (210)
|.+|.+.+.+....
T Consensus 178 ~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 178 FTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999776543
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=3.2e-33 Score=197.82 Aligned_cols=164 Identities=35% Similarity=0.566 Sum_probs=140.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|+|||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 36899999999999999999999988766554 444443 4556788888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 999999999999887 7777776655568999999999999777777888899999999999999999999999999999
Q ss_pred HHHHHHc
Q 028353 172 LVLKILD 178 (210)
Q Consensus 172 l~~~~~~ 178 (210)
+.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998864
No 34
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3e-33 Score=201.71 Aligned_cols=167 Identities=17% Similarity=0.308 Sum_probs=140.7
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
+.......+||+|+|++|||||||+++|+++.+...+.+.+.. +...+.+++..+.+.+||++|++.+. +++.+
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGR-FKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEE-EEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcce-EEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 3455677899999999999999999999999887655533333 34677889999999999999987766 67789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHhC-CeEEEEccCCCC
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVTKKEGINFAREYG-CLFIECSAKTRV 163 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (210)
|++++|||++++.+++.+.. |+..+.......++|+++|+||+|+. ..+.+..+++..++...+ ++++++||+++.
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 99999999999999999988 88888765444678999999999993 456678888999999987 899999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028353 164 NVQQCFEELVLKILDTP 180 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~ 180 (210)
|++++|.++.+.+.+.+
T Consensus 166 gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALR 182 (184)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 35
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.9e-33 Score=207.34 Aligned_cols=175 Identities=23% Similarity=0.463 Sum_probs=141.9
Q ss_pred ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028353 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84 (210)
Q Consensus 6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (210)
.........+||+|+|++|||||||+++|.++.+...+. +.+.++ ...+.+++..+.+.+||++|++.+...+..+++
T Consensus 19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 97 (214)
T 3q3j_B 19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 97 (214)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence 344555678999999999999999999999998876654 666655 455677888899999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC 152 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~ 152 (210)
.+|++|+|||++++.++..+...|+..+... ..++|+++|+||+|+... +.+..+++..++...++
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 9999999999999999999544488888775 357999999999999653 56888899999999999
Q ss_pred -eEEEEccCCCCC-HHHHHHHHHHHHHcCCCcc
Q 028353 153 -LFIECSAKTRVN-VQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 153 -~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~~~~ 183 (210)
++++|||+++.| ++++|+++++.+.+.....
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 899999999998 9999999999998766543
No 36
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.7e-33 Score=198.39 Aligned_cols=164 Identities=33% Similarity=0.587 Sum_probs=145.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998876554 47777777788888888999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|+|++++.++..+.. |+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999888 777776543 6789999999999977667778888999999999999999999999999999
Q ss_pred HHHHHHHc
Q 028353 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
++.+.+.+
T Consensus 160 ~l~~~~~~ 167 (168)
T 1z2a_A 160 YLAEKHLQ 167 (168)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998865
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.3e-33 Score=202.89 Aligned_cols=169 Identities=37% Similarity=0.632 Sum_probs=144.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGA 86 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~ 86 (210)
......+||+|+|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 34456799999999999999999999998886544 477777777888889989999999999999888 7888899999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC---C
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR---V 163 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~ 163 (210)
|++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++ .
T Consensus 95 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 99999999999999999888 8877777665678999999999999777777888889999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHc
Q 028353 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++|.+|.+.+.+
T Consensus 174 ~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 174 HVEAIFMTLAHKLKS 188 (189)
T ss_dssp CHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887743
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-33 Score=203.78 Aligned_cols=170 Identities=37% Similarity=0.671 Sum_probs=147.0
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
.+...+.+||+|+|++|+|||||+++|+++.+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 3455788999999999999999999999998754 445888888888888888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..++++.++...+++++++||+++.|++
T Consensus 97 d~iilV~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred CEEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 99999999999999999877 877776643 4578999999999997666777888999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|++|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 175 ELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877543
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.7e-33 Score=199.99 Aligned_cols=169 Identities=33% Similarity=0.507 Sum_probs=146.2
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....+||+++|++|||||||+++|.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 44677999999999999999999999988766555 5555544 567788888999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 999999999999999887 6666644444667999999999999777777788889999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028353 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|++|.+.+.+..
T Consensus 163 ~~~l~~~~~~~~ 174 (181)
T 2fn4_A 163 FEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 40
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=205.64 Aligned_cols=169 Identities=46% Similarity=0.765 Sum_probs=140.5
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+.++.+||+|+|++|||||||+++|+++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 345678999999999999999999999888765443 7777777777888998999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++|+|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 777766533 36799999999999977677778888999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028353 168 CFEELVLKILDT 179 (210)
Q Consensus 168 ~~~~l~~~~~~~ 179 (210)
+|.++.+.+.++
T Consensus 178 l~~~l~~~i~~~ 189 (200)
T 2o52_A 178 AFLKCARTILNK 189 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 41
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.5e-33 Score=197.61 Aligned_cols=163 Identities=40% Similarity=0.637 Sum_probs=141.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988766554 555444 4556778888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCCCHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~ 170 (210)
|||++++.++..+.. |...+.......++|+++|+||+|+.+.+.+..+++..++... +.+++++||++|.|++++|+
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999999888 7666666555668999999999999877777788888898887 78999999999999999999
Q ss_pred HHHHHHH
Q 028353 171 ELVLKIL 177 (210)
Q Consensus 171 ~l~~~~~ 177 (210)
++.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 42
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=204.14 Aligned_cols=172 Identities=49% Similarity=0.859 Sum_probs=143.0
Q ss_pred ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028353 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84 (210)
Q Consensus 6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (210)
....+....+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 34456678899999999999999999999998876544 47777888888888998999999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 163 (210)
.+|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..++++.++... +.+++++||+++.
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred CCCEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 9999999999999999999877 87777654 3457999999999999776777788888888874 7899999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028353 164 NVQQCFEELVLKILDT 179 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (210)
|++++|.+|.+.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 43
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=8e-33 Score=196.33 Aligned_cols=165 Identities=37% Similarity=0.666 Sum_probs=146.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+.+||+++|++|+|||||+++|.++.+... .++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999987554 44888888888888899999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++|+|++++.++..+.. |+..+... .....|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 160 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999998877 77777663 35678999999999998777777888899999999999999999999999999
Q ss_pred HHHHHHHH
Q 028353 170 EELVLKIL 177 (210)
Q Consensus 170 ~~l~~~~~ 177 (210)
.++.+.+.
T Consensus 161 ~~i~~~i~ 168 (170)
T 1z0j_A 161 IEISRRIP 168 (170)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99998764
No 44
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=208.72 Aligned_cols=171 Identities=50% Similarity=0.834 Sum_probs=151.5
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
+.+.++.+||+|+|++|||||||+++|+++.+...+. +.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 3455688999999999999999999999988765543 677777778888888889999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQD-WATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999988 888887643 4679999999999998777888888999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028353 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.+..
T Consensus 175 ~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 175 QAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987643
No 45
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-33 Score=204.98 Aligned_cols=169 Identities=26% Similarity=0.376 Sum_probs=138.1
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGA 86 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~ 86 (210)
.....+||+++|++|||||||+++|.+.. +...+++.+.++....+.+++..+.+.+|||+|.+. ...+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 44567999999999999999999999654 344445666666677788899999999999999876 445666778899
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|||+++..+|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...++++++|||++|.||+
T Consensus 113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999987 66666543334579999999999997666777788888888999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|.++.+.+...
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=8.8e-33 Score=200.19 Aligned_cols=170 Identities=35% Similarity=0.697 Sum_probs=147.4
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeE-EEEEEECCe---------EEEEEEEeCCCcccccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFK-VKYVDVGGK---------KLKLAIWDTAGQERFRT 77 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~ 77 (210)
.+.+..+||+|+|++|||||||+++|.++.+...+ ++.+.++. ...+..++. .+.+.+||+||++.+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 34678899999999999999999999998876544 47776666 555666665 78999999999999999
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.+..+++.+|++++|+|++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999887 87777765555789999999999997766777888899999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028353 158 SAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
||+++.|++++|++|.+.+.++
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.5e-33 Score=197.08 Aligned_cols=163 Identities=45% Similarity=0.723 Sum_probs=143.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4689999999999999999999998876544 578888877888889999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC---ceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE---RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
|+|++++.++..+.. |+..+.... ..+.|+++|+||+|+... +.+..+++..++...+++++++||+++.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999888 777666543 467999999999999654 567778888999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028353 169 FEELVLKIL 177 (210)
Q Consensus 169 ~~~l~~~~~ 177 (210)
|+++.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987653
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=5.4e-33 Score=200.15 Aligned_cols=170 Identities=35% Similarity=0.542 Sum_probs=144.7
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
..+....+||+|+|++|+|||||+++|.+..+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 3445567999999999999999999999988866555 444443 45567788889999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 99999999999999999887 77777766655689999999999997766778888999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|++|.+.+.++
T Consensus 170 ~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 170 KVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998653
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.3e-32 Score=195.34 Aligned_cols=168 Identities=39% Similarity=0.694 Sum_probs=143.8
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....+||+++|++|+|||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 3567899999999999999999999988876544 477777777888889999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCeEEEEccCCCCC
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVN 164 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 164 (210)
+++|||++++.++..+.. |+..+..... ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 999999999999999877 7777665432 2678999999999996 45567778888887 5678899999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 028353 165 VQQCFEELVLKILDT 179 (210)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (210)
++++|+++.+.+++.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999764
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=8.4e-33 Score=196.23 Aligned_cols=164 Identities=54% Similarity=0.854 Sum_probs=140.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+.+||+++|++|+|||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 5689999999999999999999998875544 477777777778888888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|+|++++.++..+.. |+..+.... ..++|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|.+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999998887 777776543 457899999999999 44556777888899999999999999999999999999
Q ss_pred HHHHHHcC
Q 028353 172 LVLKILDT 179 (210)
Q Consensus 172 l~~~~~~~ 179 (210)
+.+.+.++
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998765
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.8e-33 Score=196.72 Aligned_cols=164 Identities=37% Similarity=0.589 Sum_probs=142.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|+|||||+++|.++.+...+. +.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988766555 444 3446667788999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (210)
|+|++++.++..+.. |...+.......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 999999999998888 6666655555568999999999999777777788889999999999999999999999999999
Q ss_pred HHHHHHc
Q 028353 172 LVLKILD 178 (210)
Q Consensus 172 l~~~~~~ 178 (210)
+.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998754
No 52
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.9e-33 Score=200.60 Aligned_cols=166 Identities=30% Similarity=0.439 Sum_probs=138.5
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||++|++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 34577999999999999999999999998765554 666555 445677889999999999999887774 568899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc-CCCCCH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA-KTRVNV 165 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i 165 (210)
+++|||++++.++..+.. |+..+..... ..++|+++|+||+|+...+.+..+++..++...+++++++|| +++.|+
T Consensus 95 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 999999999999999987 7777765432 257899999999999777778888899999999999999999 899999
Q ss_pred HHHHHHHHHHHHc
Q 028353 166 QQCFEELVLKILD 178 (210)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (210)
+++|+++++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 53
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-32 Score=198.07 Aligned_cols=166 Identities=30% Similarity=0.576 Sum_probs=142.9
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 44678999999999999999999999988766554 555444 4456778888999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEE
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFI 155 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (210)
+++|||++++.++..+...|+..+... ..++|+++|+||+|+... +.+..+++..++...++ +++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999874588888764 347899999999999654 35677888999999997 899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHc
Q 028353 156 ECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
++||+++.|++++|+++.+.++.
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998864
No 54
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=4.2e-33 Score=199.36 Aligned_cols=169 Identities=33% Similarity=0.550 Sum_probs=143.7
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
....+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456799999999999999999999988875433 3666667777777776 67899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhcc-CCCCc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCI-KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
+++|||++++.+++.+.. |+..+..+.. ..+.| +++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 999999999999998877 7777765322 12445 89999999997766777888899999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028353 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|++|.+.+.+..
T Consensus 162 ~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 162 LCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999986654
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=203.37 Aligned_cols=168 Identities=37% Similarity=0.654 Sum_probs=136.9
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+|+|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 44567799999999999999999999998875544 47787887788888999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
++|+|||++++.++..+.. |+..+.... ..++|+++|+||+|+. ..+.+..+++..++...+++++++||++
T Consensus 103 ~iilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred EEEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 9999999999999999887 877776542 3578999999999995 3456778888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc
Q 028353 162 RVNVQQCFEELVLKILD 178 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (210)
+.|++++|.+|.+.+.+
T Consensus 181 g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998854
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=9.1e-33 Score=197.62 Aligned_cols=168 Identities=38% Similarity=0.640 Sum_probs=144.8
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+....+||+|+|++|+|||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 34456799999999999999999999988876554 47777777788888999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 89 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSK-WIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 9999999999999999887 776666532 45789999999999977777778888999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 028353 168 CFEELVLKILD 178 (210)
Q Consensus 168 ~~~~l~~~~~~ 178 (210)
+|++|.+.+.+
T Consensus 167 l~~~l~~~~~~ 177 (179)
T 2y8e_A 167 LFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 57
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-33 Score=201.35 Aligned_cols=167 Identities=31% Similarity=0.469 Sum_probs=143.6
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 3567999999999999999999999998876555 555443 45577888899999999999888 77788889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC-CHHHH
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQC 168 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~ 168 (210)
++|||++++.+++.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++. |++++
T Consensus 103 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 99999999999999987 77777765556789999999999997767778888999999999999999999999 99999
Q ss_pred HHHHHHHHHcCC
Q 028353 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|+++.+.+.+.+
T Consensus 182 ~~~l~~~i~~~~ 193 (196)
T 2atv_A 182 FYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987643
No 58
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=6.9e-33 Score=204.60 Aligned_cols=171 Identities=37% Similarity=0.693 Sum_probs=144.7
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe----------EEEEEEEeCCCcccccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK----------KLKLAIWDTAGQERFRT 77 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~ 77 (210)
.+.++.+||+|+|++|||||||+++|+++.+...+. +.+.++....+.+++. .+.+.+||+||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 344678999999999999999999999888754333 5666666666666665 78999999999999999
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.+..+++.+|++|+|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 99999999999999999999999998887 77766654333679999999999997767777888999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028353 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
||+++.|++++|++|.+.+.++.
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987643
No 59
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=201.35 Aligned_cols=166 Identities=32% Similarity=0.563 Sum_probs=123.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|.++.+...+. +.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 467999999999999999999999888765554 4433 33455778888999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-eEEEE
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|+..+... ..++|+++|+||+|+.... .+..+++..++...++ +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999875588888764 3578999999999996543 5667788899999997 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028353 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
||++|.|++++|+++.+.+++.+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998664
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=199.02 Aligned_cols=169 Identities=28% Similarity=0.463 Sum_probs=135.8
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 345678999999999999999999999888765544 554433 455677888899999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eE
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LF 154 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~ 154 (210)
++++|||++++.++..+...|+..+.... .++|+++|+||+|+.. .+.+..+++..++...+. ++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 99999999999999998755888777643 4799999999999964 245677888899998887 89
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 155 IECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+++||+++.|++++|+++++.+.+..
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999987543
No 61
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.1e-31 Score=194.19 Aligned_cols=168 Identities=33% Similarity=0.503 Sum_probs=133.0
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+....+||+++|++|||||||+++|.++.+...+. +.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 33567999999999999999999999888766555 4443 334567778888999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||+++..++..+.. |+..+.......++|+++|+||+|+.. +....+++..++...+++++++||+++.|++++
T Consensus 96 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 96 FLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999998877 777777665556799999999999965 456677888999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028353 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|++|.+.+.+.+
T Consensus 174 ~~~l~~~~~~~~ 185 (190)
T 3con_A 174 FYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=5.7e-32 Score=194.71 Aligned_cols=166 Identities=30% Similarity=0.538 Sum_probs=141.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|+|||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 357999999999999999999999888765554 444433 455678899999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|+..+.... .++|+++|+||+|+... +.+..+++..++...+. +++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 99999999999998755888777643 37899999999998653 35667788889998887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028353 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
||++|.|++++|+++.+.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999996554
No 63
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=5.2e-32 Score=193.81 Aligned_cols=162 Identities=23% Similarity=0.345 Sum_probs=135.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||+++|.++.+..+.++.+..+ ...+.+++..+.+.+||+||++. ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 457999999999999999999999999877556666443 56677888899999999999876 356788999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 166 (210)
|||++++.++..+.. |+..+..... ..++|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|++
T Consensus 79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999988 6655554322 2578999999999993 45567788888888876 6899999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028353 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.+..
T Consensus 158 ~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 158 RVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.9e-32 Score=196.35 Aligned_cols=165 Identities=27% Similarity=0.534 Sum_probs=139.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 4567999999999999999999999988865543 665554 34567788889999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEE
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIE 156 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
++|||++++.++..+...|...+..+ ..++|+++|+||+|+... +.+..+++..++...+ .++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999854488877764 357899999999999642 4567788899999888 68999
Q ss_pred EccC-CCCCHHHHHHHHHHHHHc
Q 028353 157 CSAK-TRVNVQQCFEELVLKILD 178 (210)
Q Consensus 157 ~Sa~-~~~~i~~~~~~l~~~~~~ 178 (210)
+||+ ++.|++++|+++.+.+++
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999998875
No 65
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.4e-31 Score=188.84 Aligned_cols=162 Identities=33% Similarity=0.555 Sum_probs=139.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|+|||||+++|.++.+...+. +.+. .....+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999888766554 4443 3355667788889999999999999898899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
+|+++..++..+.. |...+.......++|+++|+||+|+.. .....+++..++...+++++++||+++.|++++|+++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999998877 777777655556799999999999865 4566778888999999999999999999999999999
Q ss_pred HHHHHc
Q 028353 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-32 Score=199.29 Aligned_cols=169 Identities=53% Similarity=0.844 Sum_probs=143.4
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+....++|+|+|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34567799999999999999999999988875443 47777777778888998899999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++..++...+++++++||+++.|+++
T Consensus 95 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 777776543 347899999999999 4555667788889999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028353 168 CFEELVLKILDTP 180 (210)
Q Consensus 168 ~~~~l~~~~~~~~ 180 (210)
+|.+|.+.+.+..
T Consensus 172 l~~~l~~~~~~~~ 184 (213)
T 3cph_A 172 IFFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886643
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.1e-32 Score=202.18 Aligned_cols=177 Identities=30% Similarity=0.458 Sum_probs=145.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
......+||+|+|++|||||||+++|+++.+...+ ++.+.+.....+... +..+.+.+||+||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 44567899999999999999999999988876544 366666655555444 3448999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+.+..++...+++++++||++|.|++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLAR-WVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred CEEEEEEeCCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 99999999999999999987 877776643 4468999999999998777788888888888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccc
Q 028353 167 QCFEELVLKILDTPSLLAEGS 187 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~ 187 (210)
++|.++.+.+.+.........
T Consensus 164 ~l~~~l~~~~~~~~~~~~~~~ 184 (218)
T 4djt_A 164 LPFLHLARIFTGRPDLIFVSN 184 (218)
T ss_dssp HHHHHHHHHHHCCTTCCBCSC
T ss_pred HHHHHHHHHHhcccccccccc
Confidence 999999999998887765443
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-31 Score=195.98 Aligned_cols=164 Identities=36% Similarity=0.616 Sum_probs=140.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeE----------------------------
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK---------------------------- 61 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------------------- 61 (210)
.+..+||+|+|++|+|||||+++|++..+...+. +.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999998765444 77777777767766655
Q ss_pred ---------EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 62 ---------LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 62 ---------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
+.+.+||+||++.+...+..+++.+|++++|+|++++.++..+.. |+..+.... +.|+++|+||+|
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D- 158 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID- 158 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-
Confidence 899999999999999999999999999999999999999998887 777776542 389999999999
Q ss_pred CCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.....+..+++..++...+++++++||+++.|++++|++|.+.+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 55566778889999999999999999999999999999999988653
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.8e-31 Score=194.94 Aligned_cols=164 Identities=32% Similarity=0.582 Sum_probs=141.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|.++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 567999999999999999999999988866554 5555543 34677888899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+... ..++|+++|+||+|+... +.+..+++..++...+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 9999999999999865588887764 357899999999999765 34677788899999888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHc
Q 028353 158 SAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
||+++.|++++|++|.+.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998864
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3e-32 Score=195.42 Aligned_cols=168 Identities=36% Similarity=0.635 Sum_probs=130.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
....+||+++|++|||||||+++|.++.+...+. +.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999988765544 77777777777776 567899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCC-ceecHHHHHHHHH-HhCCeEEEEccCCCC
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESE-RVVTKKEGINFAR-EYGCLFIECSAKTRV 163 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 163 (210)
+++|||++++.+++.+.. |+..+..... ..++|+++|+||+|+... +.+..+++..++. ..+.+++++||+++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 999999999999999887 7766655432 267899999999999543 4466777888887 456889999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028353 164 NVQQCFEELVLKILDT 179 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (210)
|++++|+++.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998754
No 71
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=5e-32 Score=198.48 Aligned_cols=166 Identities=27% Similarity=0.536 Sum_probs=139.9
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 34678999999999999999999999998866544 665554 3456778888999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEE
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFI 155 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~ 155 (210)
+++|||++++.++..+...|+..+.... .++|+++|+||+|+... +.+..+++..++...+ .+++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 180 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 180 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999999998544888877643 57899999999999642 4567788899998887 6899
Q ss_pred EEccC-CCCCHHHHHHHHHHHHHc
Q 028353 156 ECSAK-TRVNVQQCFEELVLKILD 178 (210)
Q Consensus 156 ~~Sa~-~~~~i~~~~~~l~~~~~~ 178 (210)
+|||+ ++.|++++|.++++.+++
T Consensus 181 e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 181 ECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHHHHhh
Confidence 99999 689999999999998875
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.2e-32 Score=191.97 Aligned_cols=164 Identities=29% Similarity=0.433 Sum_probs=136.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|+|||||+++|.++.+...+. +.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 46899999999999999999999988764443 544444 3445678888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
|+|++++.++..+.. |...+.... ...++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|+
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 999999999988877 555554432 235789999999999977777777888888999999999999999999999999
Q ss_pred HHHHHHHc
Q 028353 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
++.+.+.+
T Consensus 160 ~l~~~~~~ 167 (172)
T 2erx_A 160 ELLNLEKR 167 (172)
T ss_dssp HHHHTCCS
T ss_pred HHHHHHhh
Confidence 99987643
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.9e-32 Score=200.67 Aligned_cols=168 Identities=24% Similarity=0.358 Sum_probs=111.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEECCe--EEEEEEEeCCCccccccchhhcccCc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVGGK--KLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
...+||+|+|++|||||||+++|.++ .+...+ ++.+.++....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57799999999999999999999988 665444 36666677777778877 89999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCC-CceecHHHHHHHHHHhCCeEEEEccCC-C
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKES-ERVVTKKEGINFAREYGCLFIECSAKT-R 162 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~ 162 (210)
|++++|||++++.++..+.. |+..+..... ..++|+++|+||+|+.. .+.+..+++..++...+++++++||++ +
T Consensus 98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 99999999999999999987 8888776543 25799999999999987 677788889999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 028353 163 VNVQQCFEELVLKILDTP 180 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~ 180 (210)
.|++++|++|.+.+.+..
T Consensus 177 ~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 177 KDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ---CHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999886543
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=4.9e-32 Score=198.38 Aligned_cols=164 Identities=29% Similarity=0.506 Sum_probs=137.1
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....+||+++|++|||||||+++|.++.+...+. +.+ ......+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 34567999999999999999999999988876555 443 4445567778889999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHhCC-eEE
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VTKKEGINFAREYGC-LFI 155 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~ 155 (210)
+++|||++++.++..+...|+..+.... .++|+++|+||+|+..... +..+++..++...++ +++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 9999999999999999755888887653 6789999999999965533 667788889998886 599
Q ss_pred EEccCCCCCHHHHHHHHHHHH
Q 028353 156 ECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
++||++|.|++++|+++.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998764
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-31 Score=194.27 Aligned_cols=166 Identities=32% Similarity=0.555 Sum_probs=138.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++|.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 467899999999999999999999988876554 5554443 34677888899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+... ..++|+++|+||+|+... +.+..+++..++...+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999855588877764 357899999999999654 34667778888888888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028353 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
||+++.|++++|++|.+.+++..
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999997654
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=2.2e-31 Score=193.12 Aligned_cols=167 Identities=26% Similarity=0.367 Sum_probs=134.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCccE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGAQG 88 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~ 88 (210)
...+||+++|++|||||||+++|.+.. +...+++.+.++....+.+++..+.+.+||++|.+. ...++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456999999999999999999999643 344444566666667788899999999999999776 44566677888999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||+++..+|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...++++++|||++|.|++++
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999887 6666655433457899999999999766667777788888888999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028353 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
|.++.+.+...
T Consensus 163 f~~l~~~~~~~ 173 (192)
T 2cjw_A 163 FEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988543
No 77
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.98 E-value=1.3e-31 Score=190.28 Aligned_cols=161 Identities=22% Similarity=0.322 Sum_probs=126.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|+|||||+++|.++.+....++.+.... .+.++ ...+.+||+||++.+...+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE--EEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 3568999999999999999999999988766666664443 33344 5789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-----FAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|+|++++.++..... |+..+.......++|+++|+||+|+..... .++... .+...+++++++||+++.|++
T Consensus 81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 81 VVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999998887 444443322336789999999999965432 122221 122345689999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+++.+.+.++
T Consensus 158 ~l~~~l~~~i~~~ 170 (171)
T 1upt_A 158 EAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998764
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=4.3e-32 Score=200.94 Aligned_cols=172 Identities=33% Similarity=0.556 Sum_probs=148.0
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (210)
.+......+||+++|++|||||||+++|+.+.+... .++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 445667889999999999999999999776665443 4588888888888899999999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (210)
+|++++|||++++.++..+.. |+..+... ..++|+++|+||+|+.+..... +...++...+++++++||+++.|+
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHH-HHHHHHHH--STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTT
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999987 87777764 3578999999999996544322 456677888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcc
Q 028353 166 QQCFEELVLKILDTPSLL 183 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~ 183 (210)
+++|.+|.+.+.+.....
T Consensus 163 ~~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 163 EKPFLWLARKLIGDPNLE 180 (221)
T ss_dssp THHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHhCcccc
Confidence 999999999998887654
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=2.3e-32 Score=196.19 Aligned_cols=164 Identities=32% Similarity=0.607 Sum_probs=126.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|+|||||++++.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 456999999999999999999999888765443 4443332 23445667788999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce----------ecHHHHHHHHHHhCC-eEEEEcc
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV----------VTKKEGINFAREYGC-LFIECSA 159 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (210)
+|||++++.++..+...|+..+.... .++|+++|+||+|+..... +..+++..++...+. +++++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999998855888887653 4789999999999865544 367788889998896 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 028353 160 KTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (210)
+++.|++++|+++.+.+++
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998854
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=5.4e-32 Score=196.58 Aligned_cols=167 Identities=21% Similarity=0.213 Sum_probs=133.1
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEE-EECCeEEEEEEEeCCCccccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYV-DVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~ 76 (210)
......+||+++|++|||||||++.+.+...... .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4557889999999999999999977765433221 1244444443333 556778999999999999999
Q ss_pred cchhhcccCccEEEEEEECCC------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q 028353 77 TLTSSYYRGAQGIIMVYDVTR------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY 150 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (210)
..+..+++++|++|+|||+++ ..++..+.. |+..+. ....++|+++|+||+|+.+. +..+++..++...
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~--~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYG--LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE 163 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTT--CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhc--cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence 999999999999999999994 456666655 655553 23467999999999999654 7778889999999
Q ss_pred CC-eEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 151 GC-LFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 151 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++ +++++||+++.|++++|++|.+.+.++.
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 99 9999999999999999999999987654
No 81
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=1.2e-33 Score=206.10 Aligned_cols=168 Identities=55% Similarity=0.918 Sum_probs=137.1
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
..++.+||+|+|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34678999999999999999999999888765443 66777777788889999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (210)
+++|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp EEECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999988 87777653 2457999999999999877777777788889999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028353 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
|.+|.+.+.++
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99998877543
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=2.3e-31 Score=193.67 Aligned_cols=171 Identities=13% Similarity=0.223 Sum_probs=124.9
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY 82 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (210)
.....+.....||+|+|++|||||||+++|+++.+... .++.+..... +++..+.+.+||+||++.+...+..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHH
Confidence 44456678889999999999999999999999988763 4466644432 23456789999999999999999999
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhcc-------CCCCcEEEEEeCCCCCCCcee---cHHHHHH-HHHHhC
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-------NQDCIKLLVGNKVDKESERVV---TKKEGIN-FAREYG 151 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~-~~~~~~ 151 (210)
++.+|++|+|||++++.++..+.. |+..+..... ..++|+++|+||+|+...... ....... ++...+
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC
T ss_pred HhcCCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe
Confidence 999999999999999999999988 4444432211 137899999999999765321 1111111 114467
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 152 CLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++++++||+++.|++++|++|.+.+.+..
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999987654
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=7.5e-32 Score=190.41 Aligned_cols=157 Identities=22% Similarity=0.371 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++|.++.+....++.+... ..+. ...+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888876666666332 2233 345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHHHH
Q 028353 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 169 (210)
++++.++..+.. |+..+.......+.|+++|+||+|+.... ..+++.... ...+++++++||+++.|++++|
T Consensus 77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999998887 55555433334678999999999996542 222222211 1234579999999999999999
Q ss_pred HHHHHHHHc
Q 028353 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999988754
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.6e-30 Score=188.28 Aligned_cols=157 Identities=22% Similarity=0.304 Sum_probs=126.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.+.+||+++|++|||||||++++.++.+..+.++.+.+. ..+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 356799999999999999999999998876666666543 3445555 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCeEEEEcc
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA 159 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 159 (210)
|+|++++.++..+.. |+..+.......++|+++|+||+|+.. ....+++.+.... .++++++|||
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999887 655554433346799999999999975 3455555555432 3467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028353 160 KTRVNVQQCFEELVLK 175 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~ 175 (210)
++|.|++++|+++.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999753
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=7.5e-31 Score=191.20 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=120.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.+.++|+++|++|||||||+++|.++.+....++.+.+. ..+.+++ +.+.+|||||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 346899999999999999999999988866656666554 3445555 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------hCCeE
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----------------YGCLF 154 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 154 (210)
|+|++++.++..+.. |+..+.......++|+++|+||+|+.. .+..+++..++.. .++++
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999888 655554433346799999999999975 4556666666542 24579
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 028353 155 IECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
++|||++|.|++++|+++.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=6.5e-30 Score=184.21 Aligned_cols=161 Identities=23% Similarity=0.361 Sum_probs=126.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||++++.++......++.+.+.. .+.++ ...+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5679999999999999999999998885455556664433 33343 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (210)
|+|++++.++..+.. |+..+.......++|+++|+||+|+..... .++...... ..+++++++||+++.|++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999887 555444333346799999999999965432 233332222 235679999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.1e-31 Score=193.29 Aligned_cols=161 Identities=22% Similarity=0.355 Sum_probs=118.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
....+||+++|++|||||||+++|.++.+....++.+.. ...+.. ..+.+.+||+||++.+...+..+++.+|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 356799999999999999999999988876544444422 222333 4478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNV 165 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i 165 (210)
+|+|++++.++..+.. |+..+.......++|+++|+||+|+.... ..+++.... ...+++++++||+++.|+
T Consensus 102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 9999999999999887 55555433334579999999999996542 222222211 122457999999999999
Q ss_pred HHHHHHHHHHHHc
Q 028353 166 QQCFEELVLKILD 178 (210)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (210)
+++|++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998743
No 88
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=4.5e-31 Score=190.81 Aligned_cols=162 Identities=21% Similarity=0.307 Sum_probs=126.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||+++|.++.+....++.+.... .+..+ .+.+.+|||||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 4679999999999999999999998887665556664433 33333 5789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 166 (210)
|+|+++++++..... |+..+.......++|+++|+||+|+..... .+++... +...+++++++||+++.|++
T Consensus 96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 999999999998887 444443333346799999999999965422 1222221 12235579999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028353 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+++.+.+.+..
T Consensus 173 ~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 173 EGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987654
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.9e-30 Score=186.28 Aligned_cols=164 Identities=22% Similarity=0.322 Sum_probs=124.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||+++|.++.+....++.+.+.. .+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4579999999999999999999998887654456654433 333443 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (210)
|+|+++++++..+.. |+..+.......+.|+++|+||+|+... ...+++..... ..+++++++||+++.|++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 999999999999988 6655554333467999999999999653 23344443332 235689999999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 028353 167 QCFEELVLKILDTPSL 182 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~ 182 (210)
++|++|.+.+.+....
T Consensus 167 ~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEH 182 (187)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998665543
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.4e-30 Score=187.00 Aligned_cols=162 Identities=22% Similarity=0.324 Sum_probs=122.7
Q ss_pred cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
........+||+++|++|||||||+++|.++.+....++.+.+.. .+.+++ +.+.+||+||++.+...+..+++.+
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 344556789999999999999999999999988555556665543 333443 7899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCC
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKT 161 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~ 161 (210)
|++++|+|++++.++..+.. |+..+.......++|+++|+||+|+... ...+++.... ...+++++++||++
T Consensus 90 d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 99999999999999999888 5444443223467999999999999653 2333333332 12345799999999
Q ss_pred CCCHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLK 175 (210)
Q Consensus 162 ~~~i~~~~~~l~~~ 175 (210)
+.|++++|++|.+.
T Consensus 167 g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 167 GEGLCQGLEWMMSR 180 (181)
T ss_dssp TBTHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHhh
Confidence 99999999999764
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.6e-31 Score=191.00 Aligned_cols=161 Identities=25% Similarity=0.334 Sum_probs=123.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|++|||||||+++|.++.+....++.+.+. ..+.++ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999887655445555433 334444 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 166 (210)
|+|++++.++..+.. |+..+.......++|+++|+||+|+..... .+++.... ...+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999998877 554443323346789999999999975432 22222221 1234579999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+++.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.1e-30 Score=188.84 Aligned_cols=161 Identities=22% Similarity=0.321 Sum_probs=124.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+|+|++|||||||+++|.++.+... .++.+.++.. + ....+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 35679999999999999999999999888643 3466665543 2 23457899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN 164 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 164 (210)
++|+|++++.++..+.. |+..+.......++|+++|+||+|+.... ..++...... ..+++++++||+++.|
T Consensus 95 i~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence 99999999999999888 55444432334679999999999996542 2222222111 2345799999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028353 165 VQQCFEELVLKILD 178 (210)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (210)
++++|++|.+.+.+
T Consensus 172 v~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 172 IDITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987744
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=182.63 Aligned_cols=162 Identities=21% Similarity=0.268 Sum_probs=123.3
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCC-CCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
......+||+++|++|||||||+++|.+.. +.. ..++.+. ....+.+++ +.+.+||+||++.+...+..+++.+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 344577999999999999999999999887 333 3335553 333444443 6899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEcc
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSA 159 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 159 (210)
|++++|+|++++.++..+.. |+..+...... .++|+++|+||+|+... ...+++..+.. ..+++++++||
T Consensus 92 d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence 99999999999999999887 55544433222 57899999999999653 33445555543 23568999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028353 160 KTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~ 177 (210)
+++.|++++|++|.+.+.
T Consensus 169 ~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTBTHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998774
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.4e-28 Score=179.25 Aligned_cols=166 Identities=45% Similarity=0.772 Sum_probs=142.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
++.++|+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999998876554 47777777777888999999999999999988888888899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (210)
+|+|+.+..++..+.. |+..+... ...+.|+++|+||+|+...+....++++.++...++.++++||+++.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 83 LVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999988877 76666543 235689999999999976666777788899999999999999999999999999
Q ss_pred HHHHHHHcC
Q 028353 171 ELVLKILDT 179 (210)
Q Consensus 171 ~l~~~~~~~ 179 (210)
++.+.+.+.
T Consensus 161 ~l~~~~~~~ 169 (199)
T 2f9l_A 161 NILTEIYRI 169 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=5.1e-29 Score=194.80 Aligned_cols=165 Identities=28% Similarity=0.528 Sum_probs=141.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|+|||||++++.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 456999999999999999999999888765554 554443 455678889999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.++..+...|...+.... .++|+++|+||+|+... +.+..+++..++...++ +++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 99999999999998755888777643 37899999999998543 45677888999999997 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028353 158 SAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
||++|.|++++|+++.+.+++.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999998754
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-30 Score=187.59 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=123.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||++++.++.+....++.+.... .+.++ ...+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5679999999999999999999998887555556664433 33444 3789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (210)
|+|++++.++..+.. |+..+.......++|+++|+||+|+.+. ...+++...... .+++++++||+++.|++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 999999999999887 5555544333567999999999999654 233333333221 23479999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=4.1e-30 Score=186.98 Aligned_cols=168 Identities=21% Similarity=0.210 Sum_probs=119.0
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccch---h
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLT---S 80 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~---~ 80 (210)
.....+..+.+||+++|++|||||||++++.+............+.......+. +..+.+.+||++|++.+.... .
T Consensus 11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ---------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 444566778899999999999999999988865333211122222233333333 566889999999999887765 7
Q ss_pred hcccCccEEEEEEECCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHH---
Q 028353 81 SYYRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE-------RVVTKKEGINFAR--- 148 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~--- 148 (210)
.+++++|++|+|||+++. +++..+.. |+..+.. ...++|+++|+||+|+... +.+..+....++.
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 899999999999999997 44455444 4444432 2457999999999998542 3445556677777
Q ss_pred -HhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 149 -EYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 149 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
..++++++|||++ .|++++|..+++.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6688999999999 99999999999875
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=4.1e-32 Score=198.68 Aligned_cols=164 Identities=29% Similarity=0.527 Sum_probs=135.3
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 34678999999999999999999999888765544 443333 4445667778889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-eEE
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFI 155 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~ 155 (210)
+++|||++++.++..+...|+..+.... .++|+++|+||+|+.... .+..+++..++...++ +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 9999999999999998744877776532 378999999999996543 4555667788888887 899
Q ss_pred EEccCCCCCHHHHHHHHHHHH
Q 028353 156 ECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
++||++|.|++++|+++.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998765
No 99
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=2.7e-28 Score=176.73 Aligned_cols=167 Identities=46% Similarity=0.791 Sum_probs=143.4
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
..+.++.++|+++|++|||||||++++.+..+...+ ++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 344567899999999999999999999998876544 4788778778888899999999999999998888888888999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
+++++|+|..+..+++.+.. |+..+... ...+.|+++++||.|+.+......++++.++...++.++++|++++.|++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999888776 66655542 23568999999999997666677788899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028353 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
++|+++.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.2e-29 Score=185.42 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=117.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-chhhcccCccE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRT-LTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~ 88 (210)
....+||+++|++|||||||+++|+++.+...+++....+.. +.+++. .+.+.+|||||++.+.. .+..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356799999999999999999999999887766655544433 555544 68899999999998887 78888999999
Q ss_pred EEEEEECCCcc-cHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHH----------------
Q 028353 89 IIMVYDVTRRD-TFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVT--KKEGINFAR---------------- 148 (210)
Q Consensus 89 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~---------------- 148 (210)
+++|||+++.. ++.....+|...+... ....++|+++|+||+|+....... .+.......
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4666666566655442 234578999999999996543221 111111111
Q ss_pred -----------------Hh--CCeEEEEccCCC------CCHHHHHHHHHHH
Q 028353 149 -----------------EY--GCLFIECSAKTR------VNVQQCFEELVLK 175 (210)
Q Consensus 149 -----------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~ 175 (210)
.. +++|++|||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=2.6e-29 Score=180.97 Aligned_cols=164 Identities=21% Similarity=0.365 Sum_probs=120.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCC-CCCCceeeeEEEEEEE---CCeEEEEEEEeCCCccccccchhhcccCcc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD--NFEE-LSPTIGVDFKVKYVDV---GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~--~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
.+||+++|++|||||||+++|.+. .+.. +.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 3433 3346666655544433 345678999999999998888888899999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCe----EEEEcc
Q 028353 88 GIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---KKEGINFAREYGCL----FIECSA 159 (210)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa 159 (210)
++++|||++++ .++..+.. |+..+... ..+.|+++|+||+|+.....+. .+....++...+++ ++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 99999999998 47888877 77776653 2478999999999997554332 23345555566776 999999
Q ss_pred CCCC-CHHHHHHHHHHHHHcCC
Q 028353 160 KTRV-NVQQCFEELVLKILDTP 180 (210)
Q Consensus 160 ~~~~-~i~~~~~~l~~~~~~~~ 180 (210)
+++. +++++++.+.+.+.+..
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC-
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 9997 99999999999886543
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=194.93 Aligned_cols=161 Identities=20% Similarity=0.350 Sum_probs=119.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+|+|++|||||||+++|.++.+....+|.+..+. .++...+.+.+|||||++.+...+..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~----~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE----EEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE----EEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3568999999999999999999998887654444443332 223345789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (210)
|||++++.++..+..+|...+.. ....++|++||+||+|+..... .+++..... ..+++++++||+++.|++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 99999999999998855555443 3345799999999999975432 222222221 224579999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028353 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|++|.+.+.++
T Consensus 316 el~~~l~~~l~~~ 328 (329)
T 3o47_A 316 EGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=2.2e-28 Score=201.03 Aligned_cols=163 Identities=23% Similarity=0.336 Sum_probs=126.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|.+|||||||+++|+++.+....+|.+.++.. +....+.+.+|||+|++.+...+..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999887766777765543 22345789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (210)
|||++++.++..+.. |+..+.......++|+|||+||+|+.... ..++...... ..+++++++||++|.|++
T Consensus 396 V~D~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 396 VVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECcchhHHHHHHH-HHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 999999999999988 44444333344679999999999996542 2222222111 123469999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028353 167 QCFEELVLKILDTPS 181 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~ 181 (210)
++|++|.+.+.+...
T Consensus 473 ~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999998754443
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=9e-29 Score=186.86 Aligned_cols=167 Identities=23% Similarity=0.286 Sum_probs=120.7
Q ss_pred ccccceeeEEEEEcCC---------CCcHHHHHHHHhcC---CCCCCCC-Cc-eeeeEEEE--------------EEECC
Q 028353 8 QQEFDYLFKLLMIGDS---------GVGKSSLLLSFTSD---NFEELSP-TI-GVDFKVKY--------------VDVGG 59 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~---------~~GKstli~~l~~~---~~~~~~~-~~-~~~~~~~~--------------~~~~~ 59 (210)
.......+||+++|++ |||||||+++|.++ .+...+. +. +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3445677999999999 99999999999984 4433332 22 22222111 11456
Q ss_pred eEEEEEEEe-----------------------CCCccccccchhhccc---------------------CccEEEEEEEC
Q 028353 60 KKLKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDV 95 (210)
Q Consensus 60 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~ 95 (210)
..+.+.+|| ++|++.+...+..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 778999999 5666666677777776 79999999999
Q ss_pred CCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCeEEEEccCCCCCHHHHHHHH
Q 028353 96 TRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 96 ~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
+++ .+++.+.. |+..+.......++|+++|+||+|+...+.+ +++..++.. .+++++++||+++.|++++|.+|
T Consensus 173 t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 173 SRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp BC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 998 99999887 7777765433457999999999999654443 566777766 47899999999999999999999
Q ss_pred HHHHH
Q 028353 173 VLKIL 177 (210)
Q Consensus 173 ~~~~~ 177 (210)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98874
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=6e-27 Score=167.27 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=118.1
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....++|+++|++|||||||+++|.++.+...+ ++.+.++....+.+++. .+.+||+||++.+...+...+..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 356789999999999999999999988876543 34444444444555654 567999999999999998899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-------C--CeEEEEccC
Q 028353 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-------G--CLFIECSAK 160 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~ 160 (210)
++|+|++++........ + ..+ ...++|+++|+||+|+... ..++........ + ++++++||+
T Consensus 83 i~v~d~~~~~~~~~~~~-l-~~~----~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEA-I-NHA----KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEEETTCCCCHHHHHH-H-HHH----GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEEECCCCCcHHHHHH-H-HHH----HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 99999998654333322 2 222 2346899999999999653 222233222222 2 579999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 028353 161 TRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++.|++++|++|.+.+...+.
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999998866543
No 106
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=5.6e-27 Score=181.47 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=133.9
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc----------c
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR----------T 77 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~----------~ 77 (210)
.+....-.|+++|.+|||||||+|+|++.++....+.++++........... ...+.+|||||..... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4556778999999999999999999999988766665555554444433333 6789999999985543 4
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFI 155 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 155 (210)
.+..++..+|++++|+|+++..+...... |...+.. .++|+++|+||+|+........+....+....+ .+++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 55667889999999999999988877655 6666654 468999999999997445555566677777765 6799
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCCcccc
Q 028353 156 ECSAKTRVNVQQCFEELVLKILDTPSLLAE 185 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~ 185 (210)
++||++|.|++++|+++.+.+.+....++.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~ 189 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGEPLFPE 189 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence 999999999999999999999777665544
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=3.4e-27 Score=175.42 Aligned_cols=165 Identities=18% Similarity=0.058 Sum_probs=113.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSS 81 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~ 81 (210)
...++|+|+|++|||||||+++|++..+.. ..+....+.....+... ...+.+|||||.... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 457999999999999999999999887641 11111122222222223 367999999998321 111233
Q ss_pred cccCccEEEEEEECCCcccHHHHH-HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhC--CeEE
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLS-DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYG--CLFI 155 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~ 155 (210)
++..+|++++|+|++++.++.... ..|+..+... ..++|+++|+||+|+...+.+..+ ....++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 467889999999999988865221 1244444431 247899999999999766555443 4566666666 8899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 156 ECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++||++|.|++++|++|.+.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=2.2e-27 Score=183.73 Aligned_cols=164 Identities=23% Similarity=0.332 Sum_probs=127.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC----CCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhcc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL----SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-----RTLTSSYY 83 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~ 83 (210)
..+||+++|++|||||||+++|+++..... .+|.+..+.. +.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 358999999999999999999998743322 2244444432 33334 688999999999887 67788889
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC---Ce
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES--ERV----VTKKEGINFAREYG---CL 153 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~ 153 (210)
+++|++|+|||++++.+++.+.. |...+... ....++|+++|+||+|+.. .+. +..+++..++..++ ++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 99999999999999999998876 55444332 1245799999999999976 333 55577888998887 68
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 154 FIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++++||++ .++.++|..+++.+....+
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li~~~~ 184 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLIPNMS 184 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred EEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence 99999999 8999999999887755443
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=4.7e-27 Score=170.32 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=111.5
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRT 77 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 77 (210)
.+....++|+++|++|||||||+++|.+..+. ...++.+.+.....+..++ .+.+||||| .+.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence 34467899999999999999999999988753 3444666666555555544 589999999 555666
Q ss_pred chhhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHH-HHHHhC
Q 028353 78 LTSSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGIN-FAREYG 151 (210)
Q Consensus 78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~ 151 (210)
.+..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.....+.. +++.. +....+
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence 666666665 9999999999988876643 2233332 5689999999999976544332 22222 222346
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 152 CLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
.+++++||+++.|++++|+++.+.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999998773
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=6.8e-27 Score=165.42 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=109.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR-- 84 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~-- 84 (210)
.++|+++|++|||||||+++|.+..+.. ..++.+.......+.+++ ..+.+|||||...+.. ....+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 5899999999999999999999876532 222323333333444444 5789999999877642 3344454
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (210)
.+|++++|+|+++.+. ... |...+.. .++|+++|+||+|+...+.+.. ++..++...+++++++||++|.|
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred CCCEEEEEecCCchhH---hHH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence 7999999999987543 333 5544443 3689999999999854333322 35677888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028353 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
++++|+++.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2e-27 Score=171.52 Aligned_cols=159 Identities=22% Similarity=0.268 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhcc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG-----------QERFRTLTSSYY 83 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~~ 83 (210)
+||+++|++|||||||+++|.+..+...+ .++.+.....+... .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK-RPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSS-STTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCC-CCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 69999999999999999999988765432 22333333444443 589999999 455666666677
Q ss_pred cC-ccEEEEEEECCCcccHHHHHHHHHHH--------HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-
Q 028353 84 RG-AQGIIMVYDVTRRDTFTNLSDVWAKE--------IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL- 153 (210)
Q Consensus 84 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (210)
+. ++++++|+++.+..++..+...|... +.......++|+++|+||+|+.... .+....++..++.+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCG
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhh
Confidence 76 77777777777777887764446542 2222234578999999999997654 55677888888764
Q ss_pred ------EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 154 ------FIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++++||++|.|++++|+++.+.+.+.++
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999999876553
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=3.2e-27 Score=165.95 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRG 85 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 85 (210)
.||+++|++|+|||||++++.+..+..... ..........+..++. .+.+||+||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999887543333 3333334444555554 688999999876 33455667899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCC
Q 028353 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 164 (210)
+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.. +++..++ ..++ +++++||+++.|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 999999999998755433 213333332 468999999999996542 2333444 5677 799999999999
Q ss_pred HHHHHHHHHHHH
Q 028353 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=2.9e-28 Score=187.54 Aligned_cols=168 Identities=19% Similarity=0.213 Sum_probs=124.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC----CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccE
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEE----LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQG 88 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~ 88 (210)
||+++|+.|||||||++++.++.++. ..+|.+.++.. ++ ..+.+++|||+|++.+.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988664433 23466655543 22 347899999999999864 35788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHHH----hCCeEEE
Q 028353 89 IIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE-------RVVTKKEGINFARE----YGCLFIE 156 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~ 156 (210)
+|+|||+++. .++.. .+|...+... ...+++|++++|||+|+... +.+..++++++++. .+++|++
T Consensus 76 ~IlV~Ditd~-~~~~~-~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAI-TNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEECCCSSC-TTHHH-HHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEECCch-HHHHH-HHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998 33333 3254433321 12467999999999999754 34556666777775 5788999
Q ss_pred EccCCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028353 157 CSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (210)
|||++ .+|.++|..+++.+..+.+.++.....+.
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~~ 187 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNLI 187 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGGG
T ss_pred eccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998 58999999999998877766665544443
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=7.1e-26 Score=163.90 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=117.6
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRTL 78 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 78 (210)
.+....+||+++|++|||||||+++|++..+....++.+.+........+. .+.+||+|| .+.+...
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 344567899999999999999999999988766666766666555444443 478999999 4555555
Q ss_pred hhhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHHhC-C
Q 028353 79 TSSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKKEGINFAREYG-C 152 (210)
Q Consensus 79 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~-~ 152 (210)
+..+++.+ |++++|+|+++..+..... +...+.. .++|+++|+||+|+.... ....+++..++...+ +
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 56665554 9999999998875544331 2233332 268999999999996443 233445556665534 6
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 153 LFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+++++||+++.|++++|+++.+.+.+
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 89999999999999999999998743
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.5e-26 Score=174.69 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=116.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch------hhcc--
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT------SSYY-- 83 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~-- 83 (210)
...++|+++|++|||||||+++|++..+. ....++.++......+......+.+||+||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 45789999999999999999999987653 11233444444444443344789999999987766532 4444
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
..+|++++|+|+++.++... |...+. ..++|+++|+||+|+...+.+.. +...++..++++++++||++|.
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~----~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLY----LLLEIL----EMEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHH----HHHHHH----TTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred cCCCEEEEEeCCCchhhHHH----HHHHHH----hcCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence 58999999999998654432 333333 24789999999999854333332 3677888889999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028353 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++|+++.+.+..
T Consensus 153 gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 153 GLEELKEKIVEYAQK 167 (258)
T ss_dssp THHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998753
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=1.7e-26 Score=191.14 Aligned_cols=166 Identities=22% Similarity=0.285 Sum_probs=125.3
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE------E--EECCeEEEEEEEeCCCccccccchh
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY------V--DVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~------~--~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
.....+||+++|.+|||||||+++|++..+...+. +.+.++.... + ..++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 35678999999999999999999999988755443 6666555331 1 1233467899999999999999999
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
.+++.+|++|+|+|+++.+ .... |+..+..+. .+.|+++|+||+|+.....+..+++..++...+++++++||+
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~ 190 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCK 190 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-
T ss_pred HHccCCcEEEEEEeCCCch---hHHH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecC
Confidence 9999999999999998653 3444 777777653 468999999999998777778888888888889999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 028353 161 TRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~ 181 (210)
+|.|++++|.++.+.+.+...
T Consensus 191 ~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 191 NGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ----CTTHHHHHHHHHTCTTS
T ss_pred cccCHHHHHHHHHHHHhcccc
Confidence 999999999999999977654
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=6.8e-26 Score=163.30 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=115.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc-
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR- 84 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 84 (210)
..++|+++|++|||||||+++|.+..+. ...++.........+..++ ..+.+|||||...+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 5689999999999999999999986542 2223333334444444444 678999999987764 23445554
Q ss_pred -CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 85 -GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
.+|++++|+|.++ ++.... |...+.. .+.|+++|+||+|+.....+. .....++...+++++++||+++.
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLY-LTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCEEEEEecchh---HHHHHH-HHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 5899999999885 444444 5555443 568999999999985433332 34677788889999999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028353 164 NVQQCFEELVLKILDTP 180 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~ 180 (210)
|++++|+++.+.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999986654
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=2.3e-26 Score=163.85 Aligned_cols=152 Identities=22% Similarity=0.188 Sum_probs=109.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSY 82 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 82 (210)
..++|+++|++|||||||+++|.+..+.... +.....+....+.+++. .+.+|||||....... ....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987653322 23333344455566654 4789999998653221 1235
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (210)
++.+|++++|+|+++..++... . |...+.... ..++|+++|+||+|+...... ++...+.+++++||+++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~-~-~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA-E-IWPEFIARL-PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTG 150 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH-H-HCHHHHHHS-CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTC
T ss_pred HHhCCEEEEEEECCCCCCHHHH-H-HHHHHHHhc-ccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCC
Confidence 7899999999999998887633 3 555555432 356899999999998432111 11124678999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028353 163 VNVQQCFEELVLKI 176 (210)
Q Consensus 163 ~~i~~~~~~l~~~~ 176 (210)
.|++++|+++.+.+
T Consensus 151 ~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 151 EGVDVLRNHLKQSM 164 (172)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.9e-26 Score=174.16 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=115.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc--
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR-- 84 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-- 84 (210)
+.++|+++|++|||||||+++|++.... ....++.++......+.. ...+.+|||||...+. ..+..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 4589999999999999999999987532 223445566555556665 6779999999987765 34455554
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (210)
.+|++++|+|+++.++.. . |...+.. .++|+++|+||+|+.....+. .+...++..++++++++||++|.|
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---Y-LTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---H-HHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCEEEEEecCCchHhHH---H-HHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 699999999999865432 2 4444432 478999999999985433333 345677888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028353 165 VQQCFEELVLKIL 177 (210)
Q Consensus 165 i~~~~~~l~~~~~ 177 (210)
++++|+++.+.+.
T Consensus 151 i~el~~~i~~~~~ 163 (272)
T 3b1v_A 151 VDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.6e-25 Score=165.70 Aligned_cols=166 Identities=17% Similarity=0.105 Sum_probs=114.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcc----------ccc
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQE----------RFR 76 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~----------~~~ 76 (210)
.+....++|+|+|++|+|||||+++|++.. ........+.+.......+. .....+.+|||||.. .+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 344567999999999999999999999887 33444455555554444544 445679999999943 223
Q ss_pred cchhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHH--
Q 028353 77 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFARE-- 149 (210)
Q Consensus 77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-- 149 (210)
..+..+++. +|++++|+|+++..+.... . |...+.. .++|+++|+||+|+....... .+........
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~-~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELDR-R-MIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH-H-HHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 344444444 8899999999986553322 2 4444443 568999999999996543321 1222233333
Q ss_pred -----hCCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 150 -----YGCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 150 -----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.+.+++++||+++.|++++|++|.+.+....
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4567999999999999999999999885443
No 121
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=2.6e-25 Score=171.34 Aligned_cols=167 Identities=19% Similarity=0.153 Sum_probs=116.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhcc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYY 83 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~ 83 (210)
.+..+|+++|++|||||||+|+|++.++......++++.......+......+.+|||||... +.......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 455689999999999999999999998865544333333322222333457899999999765 344555678
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
+.+|++++|+|++++.+... .++...+... ..++|+++|+||+|+........+.+..+ ....+++++||+++.
T Consensus 85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDER 158 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHH
T ss_pred hcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCC
Confidence 99999999999998765543 2233445432 24689999999999965433112222222 112469999999999
Q ss_pred CHHHHHHHHHHHHHcCCCccc
Q 028353 164 NVQQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~ 184 (210)
|++++++++.+.+.+....++
T Consensus 159 gv~~l~~~l~~~l~~~~~~y~ 179 (301)
T 1wf3_A 159 QVAELKADLLALMPEGPFFYP 179 (301)
T ss_dssp HHHHHHHHHHTTCCBCCCSSC
T ss_pred CHHHHHHHHHHhcccCCCCCC
Confidence 999999999988766555443
No 122
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=1.4e-24 Score=176.43 Aligned_cols=156 Identities=17% Similarity=0.070 Sum_probs=99.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccch--------hhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLT--------SSY 82 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 82 (210)
..++|+++|++|+|||||+|+|++.........++++. ....+.+++ +.+.+|||||...+...+ ...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 46899999999999999999999886544443333333 334445554 579999999987655433 346
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (210)
+..+|++++|+|++++.++..... +...+... .++|+++|+||+|+........ ..+......+++++||+++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg 382 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALNG 382 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCC
Confidence 789999999999999988865433 44444332 2689999999999976654422 2233332478999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028353 163 VNVQQCFEELVLKIL 177 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~ 177 (210)
.|++++|++|.+.+.
T Consensus 383 ~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 383 DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BSHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999986
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=3.5e-25 Score=167.01 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhcc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----------LTSSYY 83 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~ 83 (210)
.+|+++|.+|||||||+++|++..+. ...+....+.....+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999987642 12223333334444444553 789999999876653 445556
Q ss_pred --cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 84 --RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
..+|++++|+|+++.++...+. ..+. ..++|+++|+||+|+........ ....+....+++++++||++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~ 150 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK 150 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence 8899999999999865544332 2222 34789999999999854332211 23456777899999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLK 175 (210)
Q Consensus 162 ~~~i~~~~~~l~~~ 175 (210)
|.|++++|+++.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999887
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=4.4e-25 Score=168.13 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=113.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY-- 83 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~-- 83 (210)
+.++|+++|++|||||||+++|++..+.. ..++.+.+.....+...+ ..+.+||+||...+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 35899999999999999999999876521 222333333344444444 4589999999877665 444555
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
..+|++++|+|+++.+. ... |...+.. ...+|+++|+||+|+......... ...+...++++++++||+++.
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLF-LTLELFE---MEVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHH-HHHHHHH---TTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred cCCcEEEEEecCCcchh---hHH-HHHHHHh---cCCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence 68999999999998532 222 2222222 123899999999998543322222 567778889999999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028353 164 NVQQCFEELVLKILDTP 180 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~ 180 (210)
|++++|+++.+.+.+..
T Consensus 152 gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 152 GVEELKRMIALMAEGKV 168 (271)
T ss_dssp THHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999886554
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1e-25 Score=171.75 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=110.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----------LTSSY 82 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~ 82 (210)
..++|+++|++|||||||+|+|++..+. ....++.+.......+......+.+|||||...+.. .+..+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEE-EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcc-cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3589999999999999999999987642 222333333333333332335688999999876652 12222
Q ss_pred --ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 83 --YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
...+|++++|+|+++.++...+ ...+.. .++|+++|+||+|+........ ....+....+++++++||+
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYL----TLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHH----HHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCG
T ss_pred HhhcCCCEEEEEecCCChHHHHHH----HHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcC
Confidence 2789999999999986544333 333332 2689999999999854332221 2456777889999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 028353 161 TRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (210)
+|.|++++|+++.+.+.+.
T Consensus 152 ~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999998876544
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=8.9e-25 Score=176.71 Aligned_cols=162 Identities=18% Similarity=0.126 Sum_probs=114.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQE----------RFRTLT 79 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 79 (210)
+..+||+++|++|||||||+++|++..+.......+++ .....+..++. .+.+|||||+. .+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999988764333323333 33334455554 48999999973 232222
Q ss_pred h-hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-H----HhCCe
Q 028353 80 S-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-R----EYGCL 153 (210)
Q Consensus 80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~ 153 (210)
. ..++.+|++++|+|++++.+++... |...+. ..++|+++|+||+|+.+.+....++..... . ..+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence 2 3678899999999999998887753 555544 257899999999999765544333332222 2 23678
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 154 FIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
++++||++|.|++++|+.+.+.+.+...
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998876543
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=4.1e-25 Score=162.97 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=104.4
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A 86 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 86 (210)
....++|+++|++|+|||||+++|.+..+.........+. ..+.....+.+||+||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4567999999999999999999999888654221111111 111144678999999999998888888776 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCeEEE
Q 028353 87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVT------KKEGINFAREYGCLFIE 156 (210)
Q Consensus 87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~ 156 (210)
|++++|+|++ ++.++..... |+..+.... ...++|+++|+||+|+.....+. .+++..++...++++++
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 162 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE 162 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999 8889988887 444443322 24679999999999997665543 45567777777888999
Q ss_pred EccCCCCC
Q 028353 157 CSAKTRVN 164 (210)
Q Consensus 157 ~Sa~~~~~ 164 (210)
+||+++.+
T Consensus 163 ~Sa~~~~~ 170 (218)
T 1nrj_B 163 VERKINEE 170 (218)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99998874
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=1.9e-24 Score=175.66 Aligned_cols=165 Identities=19% Similarity=0.128 Sum_probs=120.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRTL 78 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 78 (210)
....++|+++|.+|+|||||+++|++........ ....+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 3567999999999999999999999776432223 2222333344555554 789999999 4555444
Q ss_pred hh-hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-----CC
Q 028353 79 TS-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-----GC 152 (210)
Q Consensus 79 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~ 152 (210)
.. .+++.+|++++|+|+++..+.... . |...+.. .++|+++|+||+|+...+....++..+.+... ++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~-~-~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDK-R-IAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA 343 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHH-H-HHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence 33 367889999999999986654332 2 5554443 56899999999999877666666666666655 57
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028353 153 LFIECSAKTRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
+++++||++|.|++++|.++.+.+.+.....
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~ 374 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKASENHSLRV 374 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence 8999999999999999999999886655443
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=1.9e-23 Score=161.08 Aligned_cols=165 Identities=19% Similarity=0.119 Sum_probs=113.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhcc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLTSSYY 83 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 83 (210)
+..+|+++|++|+|||||+++|++..+......++++.......+......+.+|||||.. .+.......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4458999999999999999999988765433333333322222222334678999999986 2334456678
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (210)
+.+|++++|+|+++ -+ .....+...+. ..+.|+++++||+|+........+.+..+....+. .++++||+++
T Consensus 87 ~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 87 GDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred hcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 89999999999977 32 22221222222 35689999999999875222233444555555665 6999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccc
Q 028353 163 VNVQQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~~~ 184 (210)
.|++++++++.+.+.+....++
T Consensus 160 ~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp TTHHHHHHHHHTTCCBCCCSSC
T ss_pred CCHHHHHHHHHHhCCcCCCCCC
Confidence 9999999999988766554443
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=4.3e-25 Score=176.67 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=112.3
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--eeEEEEEEECCeEEEEEEEeCCCccccccc-------h
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--DFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------T 79 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~ 79 (210)
.+....++|+|+|++|+|||||+++|++..+.......+. ......+.+.+. ..+.+|||||+..+... +
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 4556789999999999999999999998887543333333 333444444443 27899999998876544 3
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
..++..+|++++|+|++... .... |...+.. .++|+++|+||+|+...... +....+....+++++++||
T Consensus 108 ~~~l~~aD~vllVvD~~~~~---~~~~-~l~~l~~----~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSA 177 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPTP---YEDD-VVNLFKE----MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSA 177 (423)
T ss_dssp HHHHTSCSEEEEECSSSCCH---HHHH-HHHHHHH----TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSS
T ss_pred HHHHhcCCEEEEEEeCCChH---HHHH-HHHHHHh----cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEEC
Confidence 44788999999999993322 2222 6666654 27899999999999766544 4556666677889999999
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 028353 160 KTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (210)
+++.|++++|++|.+.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999998554
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=5.2e-23 Score=162.38 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=114.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSS 81 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~ 81 (210)
...++|+++|++|||||||+++|.+..... ..+..........+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876421 11211111222222222 45789999999754221 1123
Q ss_pred cccCccEEEEEEECCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 82 YYRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
+...+|++++|+|+++.. ++..... |+..+.... .+.|+++|+||+|+.....+ +++..++...+++++++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence 445689999999999876 6666666 666665532 27899999999999755432 4456666777899999999
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 028353 160 KTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (210)
++|.|++++++++.+.+.+.
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999988554
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=1.4e-23 Score=170.62 Aligned_cols=152 Identities=20% Similarity=0.184 Sum_probs=111.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhh
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE-RFRT--------LTSS 81 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~ 81 (210)
..++|+++|.||+|||||+|+|++.+...... ....+.....+.+++ ..+.+|||||.. .+.. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 34899999999999999999999886543333 223333344455555 468999999987 5432 2345
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
.+..+|++++|+|++++.+++... ++..+ .++|+++|+||+|+... ...+++..+. ..+.+++++||++
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAkt 388 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALK 388 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGG
T ss_pred HhhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCC
Confidence 678999999999999988876542 22222 36899999999999653 3334444432 2346899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028353 162 RVNVQQCFEELVLKIL 177 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~ 177 (210)
+.|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999865
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=9.4e-23 Score=163.32 Aligned_cols=166 Identities=16% Similarity=0.104 Sum_probs=116.6
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-------------------EEEECCeEEEEEEEeCC
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK-------------------YVDVGGKKLKLAIWDTA 70 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~D~~ 70 (210)
.....++|+++|++++|||||+++|++............+.... ..........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 45667999999999999999999999754432111111111000 00001233789999999
Q ss_pred CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH
Q 028353 71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR 148 (210)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~ 148 (210)
|++.+...+...+..+|++++|+|+++..++..... |+..+... ...|+++|+||+|+.+.... ..+++..+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876766666 55555432 22589999999999754322 1222333332
Q ss_pred Hh---CCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 149 EY---GCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 149 ~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.. +++++++||++|.|+++++++|.+.+...
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 22 56899999999999999999999877443
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=2.2e-23 Score=168.71 Aligned_cols=153 Identities=24% Similarity=0.280 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccc---------cccchhhcc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSYY 83 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 83 (210)
.+|+++|.||||||||+|+|++.....+..+++.+.. ...+..++. .+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 4799999999999999999998876544444554433 334444554 578999999654 233456678
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHhCC-eEEEEccCC
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG-INFAREYGC-LFIECSAKT 161 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 161 (210)
+.+|++++|+|+.++.+.... . +...+.. .++|+++|+||+|+... . ..+. .++. ..++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~-~-i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE-S-LADFLRK----STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH-H-HHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHH-H-HHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 999999999999987665432 1 2222322 36899999999998422 1 1222 3333 4666 689999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028353 162 RVNVQQCFEELVLKILDT 179 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (210)
|.|++++++++.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999988754
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=5.1e-24 Score=172.28 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhcccCc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSSYYRGA 86 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~ 86 (210)
.+|+++|.+|||||||+++|.+..+..+..+++.+.......+......+.+|||||.. .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998877666777877766666666666789999999975 4555667788999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCH
Q 028353 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNV 165 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 165 (210)
|++++|+|+.++.+.... . +...+. ..++|+++|+||+|+...... ..++. ..+. +++++||++|.|+
T Consensus 84 d~il~vvD~~~~~~~~d~-~-~~~~l~----~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADE-E-VAKILY----RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp SEEEEEEETTTCSCHHHH-H-HHHHHT----TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred CEEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence 999999999988776542 1 333333 357899999999998643211 11122 3455 6899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028353 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
.++++++.+.+.+.
T Consensus 153 ~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 153 GDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999988643
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=5.2e-23 Score=160.72 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhcc---c
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER----FRTLTSSYY---R 84 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~ 84 (210)
.+|+|+|.++||||||+++|++.... ..++ |...+.. .+.+++ ...+.+||+||... ...+...++ .
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 36889999999999999999977542 2222 2222222 233333 24689999999533 233434444 4
Q ss_pred CccEEEEEEECCC---cccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEc
Q 028353 85 GAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECS 158 (210)
Q Consensus 85 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S 158 (210)
.+|++|+|+|+++ ..++..+.. |...+..+.. ..++|+++|+||+|+.... +....+...+. .+++++|
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCS
T ss_pred hccEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEE
Confidence 5999999999998 778888876 7777776532 2578999999999986432 34455666655 6799999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCC
Q 028353 159 AKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
|+++.|+++++.+|.+.+.+.+.
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCCcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999999866543
No 137
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=151.54 Aligned_cols=168 Identities=12% Similarity=0.134 Sum_probs=106.5
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceee--eEEEEEEECCeEEEEEEEeCCCcc-----------
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVD--FKVKYVDVGGKKLKLAIWDTAGQE----------- 73 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~----------- 73 (210)
+.+....+||+++|++|||||||+++|++..+.... +..+.+ .....+..++ ..+.+|||||..
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~ 100 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSK 100 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHH
Confidence 444567899999999999999999999988774332 222233 3333344444 468999999943
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHH-HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------HHHHHHH
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN-LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------KKEGINF 146 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~ 146 (210)
.+...+...++.+|++++|+|+++...... ....+...+.. ....|+++|+||+|+.....+. .+.+..+
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE---RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH---HHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh---hccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 333444455678899999999986544221 11112222221 2346999999999986544333 2356778
Q ss_pred HHHhCCeEEEEccCCC-----CCHHHHHHHHHHHHHcCC
Q 028353 147 AREYGCLFIECSAKTR-----VNVQQCFEELVLKILDTP 180 (210)
Q Consensus 147 ~~~~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~ 180 (210)
....+..++.+++..+ .++.++|..+.+.+.++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 8888888888887754 689999999988886643
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=2.8e-22 Score=166.53 Aligned_cols=159 Identities=23% Similarity=0.282 Sum_probs=112.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--CC---------CC---CCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDN--FE---------EL---SPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~--~~---------~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~ 73 (210)
+..||+|+|++++|||||+++|+... .. .. ....+.++......+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998532 11 00 012233333222222 5567899999999999
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 153 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (210)
.+...+...++.+|++|+|+|+++..+...... |..... .++|+++|+||+|+.... ..+...++....+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCC
Confidence 999988899999999999999999888777666 554432 468999999999997653 223345555556664
Q ss_pred ---EEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 154 ---FIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 154 ---~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
++++||++|.|++++++++.+.+...
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 89999999999999999999987543
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.3e-21 Score=156.93 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=105.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLKLAI 66 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 66 (210)
...++|+++|++++|||||+++|++... .... + |....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4579999999999999999999985432 2111 1 3333332222211 1 1 1378999
Q ss_pred EeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHH
Q 028353 67 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGI 144 (210)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~ 144 (210)
||+||++.+...+...+..+|++|+|+|++++........ .+..+.. ....|+++++||+|+..... ...+++.
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988877777888999999999997542222222 2222222 12247999999999975443 2345566
Q ss_pred HHHHH---hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 145 NFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 145 ~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.++.. .+++++++||+++.|+++++++|.+.+...
T Consensus 162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 66654 367899999999999999999999877543
No 140
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=3.5e-22 Score=156.54 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=96.8
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
.+.+.+||++|++.+...|..++++++++|+|+|+++ ..++..... |+..+.......++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence 5789999999999999999999999999999999999 456888777 55555443334679999999999
Q ss_pred CCCCCc---------------eecHHHHHHHHH-----------HhCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 131 DKESER---------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 131 Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|+.... ....+++..++. ..++.+++|||+++.||.++|+++.+.+++.
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 984222 256777888876 3467799999999999999999999998754
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.1e-22 Score=153.85 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=105.1
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CC--ceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PT--IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------- 78 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------- 78 (210)
+....++|+|+|++|||||||+++|++....... .. .........+..++ ..+.+|||||.......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 3456799999999999999999999987743322 22 22222223333333 56899999997654321
Q ss_pred ---hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEe-CCCCCCCceecH-------HHHHHH
Q 028353 79 ---TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGN-KVDKESERVVTK-------KEGINF 146 (210)
Q Consensus 79 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~ 146 (210)
....++.+|++++|+|+++..... ..+...+... ......|.++|+| |+|+.... +.. .++..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence 223578899999999998622221 1122233222 1122356666666 99997432 222 234445
Q ss_pred HHHhCCe---E--EEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 147 AREYGCL---F--IECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 147 ~~~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
....+.. + +++||+++.|++++|.+|.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5555543 2 78999999999999999999998765
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=7.4e-22 Score=163.76 Aligned_cols=161 Identities=21% Similarity=0.275 Sum_probs=115.0
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCC--CCC---------CC---CCceeeeE----EEEEEE-CCeEEEEEEEeCCC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE---------LS---PTIGVDFK----VKYVDV-GGKKLKLAIWDTAG 71 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~--~~~---------~~---~~~~~~~~----~~~~~~-~~~~~~~~l~D~~g 71 (210)
.+...+|+++|+.++|||||+++|+... +.. .. ...+.++. ...+.. ++..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3567899999999999999999997521 110 00 01222221 122221 55678999999999
Q ss_pred ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028353 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (210)
+..+...+...++.+|++|+|+|+++..+.+.... |..... .++|+++|+||+|+.... ..+...++....+
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg 154 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG 154 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence 99999888888999999999999999988877766 544332 468999999999997543 2223445555556
Q ss_pred C---eEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 152 C---LFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 152 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
. +++++||++|.|++++|+++.+.+...
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 5 389999999999999999999988543
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=4.3e-22 Score=162.45 Aligned_cols=161 Identities=15% Similarity=0.086 Sum_probs=111.6
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCC----CC--CCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccchh
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN----FE--ELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~----~~--~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
......++|+++|++++|||||+++|++.. .. ......+.+. ....+.+++ ..+.+||+||++.+...+.
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHH
Confidence 334567999999999999999999999776 11 1111112221 112233333 6799999999999888888
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCeE
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREY----GCLF 154 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~ 154 (210)
..+..+|++++|+|+++...-+... ++..+.. .++|+++|+||+|+.+.... ..+++..++... +.++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGE--HMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHH--HHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHhhCCEEEEEEecCCCccHHHHH--HHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 8899999999999999853322222 2222222 35788999999999753221 234455555555 5689
Q ss_pred EEEccCCCCCHHHHHHHHHHHHH
Q 028353 155 IECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
+++||++|.|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999875
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=4.6e-23 Score=166.87 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=103.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT--------SS 81 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~ 81 (210)
...++|+++|++|+|||||+|+|++..+..... ....++....+.+++ ..+.+|||||...+...+ ..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 356899999999999999999999876543333 333333333445555 467999999976544322 33
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (210)
.+..+|++++|+|++++.+.... . |+..+. ..|+++|+||+|+....... ....+. .+.+++++||++
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l~------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAkt 367 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQ-E-IYEQVK------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQ 367 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHH-H-HHHHHT------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTT
T ss_pred hhhcCCEEEEEeccCCCCCHHHH-H-HHHhcc------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCC
Confidence 57889999999999998776552 2 444443 26999999999997554332 111111 356799999999
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 028353 162 RVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~ 180 (210)
+.|+++++++|.+.+....
T Consensus 368 g~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 368 KQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TBSHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHHhccC
Confidence 9999999999999886543
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=1.8e-21 Score=157.19 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=107.0
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------------------CCCCceeeeEEEEEEECC
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------------------------LSPTIGVDFKVKYVDVGG 59 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 59 (210)
+....++|+++|++++|||||+++|++..-.. .....+.+.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 44567999999999999999999996432100 001234455444445555
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc---HH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCC
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDK 132 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl 132 (210)
....+.+|||||++.+...+...++.+|++|+|+|+++... |+ .... .+.... ..++| +++|+||+|+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCCC
Confidence 66789999999999999888888999999999999998642 11 1111 111222 23566 8999999998
Q ss_pred CCCc------eecHHHHHHHHHHhC------CeEEEEccCCCCCHHHHHH
Q 028353 133 ESER------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 133 ~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 170 (210)
.... ....++...++...+ ++++++||++|.|++++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5321 112233444554444 4799999999999999665
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=1.6e-21 Score=156.51 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=112.1
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEE
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLK 63 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~ 63 (210)
......++|+++|++++|||||+++|++... .... . |....+....+.. + + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 3456779999999999999999999985432 1111 1 3332332222211 0 1 1378
Q ss_pred EEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHH
Q 028353 64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKK 141 (210)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 141 (210)
+.+||+||++.+.......+..+|++|+|+|+++......... .+..+... ...|+++|+||+|+..... ...+
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHH
Confidence 9999999999888877777888999999999997542222222 11222221 1257899999999975432 2234
Q ss_pred HHHHHHHH---hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 142 EGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 142 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
++..++.. .+++++++||+++.|+++++++|.+.+..
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 45555543 36789999999999999999999987654
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=1.9e-22 Score=164.95 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=101.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC--C----------------------------CCCCCceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF--E----------------------------ELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...+||+++|++++|||||+++|++... . ......+.++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3569999999999999999999975411 0 001123444444444555566
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHH------HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN------LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
..+.||||||++.+...+...++.+|++|+|+|++++.++.. ... ....... ....|++||+||+|+.+.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~---~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS---LGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHHH---cCCCcEEEEEECcCcccc
Confidence 789999999999999999999999999999999998754321 111 2222221 122469999999999764
Q ss_pred ceecHHH----HHHHHHHh-----CCeEEEEccCCCCCHHH
Q 028353 136 RVVTKKE----GINFAREY-----GCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 136 ~~~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 167 (210)
.....++ +..+.... +++++++||++|.|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 3333333 33333333 45799999999999875
No 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.3e-21 Score=147.00 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=106.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSSY 82 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~ 82 (210)
...+||+++|.+|||||||+|+|++........ +.+.+..............+.+|||||.. .+.......
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 567999999999999999999999887654332 33333333323332234678999999952 222222222
Q ss_pred ----ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHh
Q 028353 83 ----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVT------KKEGINFAREY 150 (210)
Q Consensus 83 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~ 150 (210)
.+.+|++++|+|+++..... ..+...+.... ...+.|+++++||.|+....... .+....+...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 38999999999998532221 11233333211 11257999999999996542111 13457777778
Q ss_pred CCeEEEEccCC-----CCCHHHHHHHHHHHHHcCCC
Q 028353 151 GCLFIECSAKT-----RVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 151 ~~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~~~~ 181 (210)
+..++.+++.. +.|+++++..+.+.+.++..
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 88887777665 47999999999998876433
No 149
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=1.2e-21 Score=151.53 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=95.8
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
..+.+.+||++|++.++..|..++++++++|+|+|++ +..++..... |...+.......++|+++++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence 3478999999999999999999999999999999665 5667777777 4444443344467999999999
Q ss_pred CCCCCCc----------------eecHHHHHHHHH----------HhCCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028353 130 VDKESER----------------VVTKKEGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 130 ~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
+|+...+ ..+.+++..++. ..++.+++|||+++.||+.+|..+.+.+++..
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 9985332 356777777743 34567899999999999999999999998754
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=6.7e-22 Score=160.03 Aligned_cols=162 Identities=22% Similarity=0.201 Sum_probs=109.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQERFRTL----------- 78 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------- 78 (210)
...++|+++|++|||||||+++|++.......+.++++ .....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35699999999999999999999988753333333333 22344555665 5789999997432211
Q ss_pred -hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-HHH----HhCC
Q 028353 79 -TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-FAR----EYGC 152 (210)
Q Consensus 79 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~----~~~~ 152 (210)
....++.+|++++|+|+++..+..... +...+. ..++|+++|+||+|+.+.+....++... +.. ..++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 329 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence 123467789999999999877765431 223232 3568999999999997654433333222 222 2357
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 153 LFIECSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
+++++||++|.|++++|+.+.+.+.+...
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999988766543
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=1.9e-22 Score=163.98 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=105.5
Q ss_pred ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC--------ccccccch
Q 028353 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG--------QERFRTLT 79 (210)
Q Consensus 8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~ 79 (210)
+.......+|+++|.+|||||||+++|++..+.....+++.+.......+......+.+||||| ++.+...+
T Consensus 17 ~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 17 RGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred ChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 3444556899999999999999999999988776666788887777777777777899999999 55666677
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEc
Q 028353 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECS 158 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 158 (210)
..+++.+|++|+|+|..+..+... ..+...+. ..++|+++|+||+|+..... ...++ ...+. .++++|
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~iS 165 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CCS-GGGSSSSEEECC
T ss_pred HhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhh----hHHHH-HHcCCCceEEee
Confidence 778899999999999887554433 21333333 36789999999999853321 11111 12333 478999
Q ss_pred cCCCCCHHHHHHHHHHHHHc
Q 028353 159 AKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~ 178 (210)
|++|.|+.++++++.+.+.+
T Consensus 166 A~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGG
T ss_pred cccccchHHHHHHHHhhccc
Confidence 99999999999999887654
No 152
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=2.3e-21 Score=156.60 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=104.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC---CCC---------C-CC-------------------ceeeeEEEEEEECC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---EEL---------S-PT-------------------IGVDFKVKYVDVGG 59 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~---~~~---------~-~~-------------------~~~~~~~~~~~~~~ 59 (210)
...+||+++|++++|||||+++|++... ... . .+ .+.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4669999999999999999999986541 110 0 01 12222222223334
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCCCce-
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKESERV- 137 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~- 137 (210)
....+.+|||||++.+...+...+..+|++|+|+|+++....+.. . ++..+.. .+. |+++|+||+|+.....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~-~l~~~~~----~~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-R-HSYIASL----LGIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEEECTTTTTSCHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH----cCCCeEEEEEEcCcCCcccHH
Confidence 456799999999999988888889999999999999987643332 2 3333332 233 6899999999975321
Q ss_pred -e--cHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHH
Q 028353 138 -V--TKKEGINFAREYG-----CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 138 -~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 169 (210)
. ..++...++...+ ++++++||++|.|+++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 1 2345566667777 679999999999998853
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=7.8e-22 Score=150.36 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=93.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-C--------CCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-L--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER------- 74 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 74 (210)
....++|+++|.+|+|||||+|+|++..... . .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 3467999999999999999999988765432 2 22444444444454455667999999999632
Q ss_pred cccch-------hhcc-------------cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 75 FRTLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 ~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
+..+. ..++ ..+|+++++++.+.......-.. ++..+.. ++|+++|+||+|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~-~l~~l~~-----~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE-FMKRLHE-----KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHH-HHHHHTT-----TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHH-HHHHHhc-----cCCEEEEEeccCCCC
Confidence 11111 1111 23789999998776332222222 4444432 789999999999864
Q ss_pred Cceec--HHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 135 ERVVT--KKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 135 ~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
..... .+.+.......+++++++|++++.|+++++.+|.+.+
T Consensus 159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 43322 2344555667789999999999999999999988754
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.8e-22 Score=158.17 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=92.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER 74 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 74 (210)
...++|+|+|++|+|||||+++|++.... ..+ ++.+.......+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45789999999999999999998765432 111 23333333333344566778999999998 55
Q ss_pred cccchh-------hcccCc-------------cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 75 FRTLTS-------SYYRGA-------------QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
+..++. .+++.+ ++++++++.+ ..++..+...|+..+ ..++|+|+|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence 555554 333332 3455555432 344555543344433 35789999999999976
Q ss_pred CceecH--HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028353 135 ERVVTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 135 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+.+.. +++..++...+++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 554443 466677777789999999999999 88999999988776554
No 155
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=7.7e-21 Score=148.93 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=91.3
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
..+.+.+||++|++.+...|..++++++++|+|||++ +..+++.... |...+.......++|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5789999999999999999999999999999999998 7788988887 5555544333467999999999
Q ss_pred CCCCCCce---------------------ecHHHHHHHHHH----------------hCCeEEEEccCCCCCHHHHHHHH
Q 028353 130 VDKESERV---------------------VTKKEGINFARE----------------YGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 130 ~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
+|+...+. ...+++..++.. ..+.+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99842211 124566666443 12346899999999999999999
Q ss_pred HHHHHc
Q 028353 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+++
T Consensus 340 ~~~I~~ 345 (354)
T 2xtz_A 340 DETLRR 345 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=6.9e-22 Score=162.45 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=86.3
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CCCC---CCceeeeEEEEEEECCeEEEEEEE
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------------EELS---PTIGVDFKVKYVDVGGKKLKLAIW 67 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 67 (210)
.+.....+|+|+|++|+|||||+++|+.... .... ...+.++......+....+.++||
T Consensus 8 ~~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~li 87 (528)
T 3tr5_A 8 KQTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLL 87 (528)
T ss_dssp HHHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEE
T ss_pred hhhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEE
Confidence 3456778999999999999999999962110 0000 001222222223333345789999
Q ss_pred eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
||||+..+...+...++.+|++|+|+|+++..+...... |.. +. ..++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCccc
Confidence 999999999999999999999999999999877766544 432 22 346899999999999643
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=3.8e-21 Score=151.96 Aligned_cols=146 Identities=8% Similarity=0.029 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
+|+++|++++|||||+++|+ ..+.+.......+......+.+|||||++.+.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 12232222333444455679999999999988777778899999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEe-CCCCCCCceecH--HHHHHHHHHh---CCeEEE--EccCC---CC
Q 028353 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGN-KVDKESERVVTK--KEGINFAREY---GCLFIE--CSAKT---RV 163 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~ 163 (210)
+. ..+..... +...+.. .++|. ++++| |+|+ +.+.... +++..++... .+++++ +||++ +.
T Consensus 93 ~~-g~~~qt~e-~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 PQ-GLDAHTGE-CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp TT-CCCHHHHH-HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred CC-CCcHHHHH-HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 54 34444444 4444432 34676 88888 9998 4432222 4455555443 368999 99999 99
Q ss_pred CHHHHHHHHHHHHHc
Q 028353 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++++.|.+.+..
T Consensus 166 gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 166 GVDELKARINEVAEK 180 (370)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccc
Confidence 999999999988753
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=5.1e-22 Score=160.42 Aligned_cols=157 Identities=20% Similarity=0.232 Sum_probs=104.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC----------------------------CCceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS----------------------------PTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 61 (210)
...+||+++|++++|||||+++|++. .+.... ...+.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999864 222100 012223332223344455
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhh---ccCCC-CcEEEEEeCCCCCCCc-
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY---STNQD-CIKLLVGNKVDKESER- 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~-~p~ivv~nK~Dl~~~~- 136 (210)
..+.+|||||++.+...+...++.+|++|+|+|+++ .+|+.... |......+ ....+ .|+++++||+|+....
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 789999999999999888889999999999999998 56664332 11111110 11123 3689999999997521
Q ss_pred -----eecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHHH
Q 028353 137 -----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 137 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (210)
....+++..++...+ ++++++||++|.|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 122455667777665 6799999999999986654
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=3.6e-21 Score=153.79 Aligned_cols=159 Identities=17% Similarity=0.131 Sum_probs=112.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC-------CCCCC--------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD-------NFEEL--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
..+||+++|++++|||||+++|++. .+... ....+.+.......+......+.+|||||++.+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 3589999999999999999999863 11110 00233344433344544556789999999999888
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHhC--
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREYG-- 151 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-- 151 (210)
.+...++.+|++|+|+|+++....+.... | ..+.. .++| +++++||+|+..... ...+++..++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88888999999999999998765443332 3 33332 3678 689999999974221 12345666776665
Q ss_pred ---CeEEEEccCCCCC----------HHHHHHHHHHHHH
Q 028353 152 ---CLFIECSAKTRVN----------VQQCFEELVLKIL 177 (210)
Q Consensus 152 ---~~~~~~Sa~~~~~----------i~~~~~~l~~~~~ 177 (210)
++++++||+++.| +.++++.+.+.+.
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 8888888877664
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=2.4e-21 Score=155.34 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=113.4
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCCC--------CCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD--------NFEELS--------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
....++|+++|++++|||||+++|++. .+.... ...+.++......++.....+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999863 221110 0233444444444555557789999999999
Q ss_pred cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHh
Q 028353 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREY 150 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~ 150 (210)
+...+...++.+|++|+|+|+++...... .. |+..+.. .++| +++++||+|+..... ...+++..++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 98888888999999999999998765433 33 4444432 3578 889999999974221 1223456666666
Q ss_pred C-----CeEEEEccCCCCC------------------HHHHHHHHHHHHH
Q 028353 151 G-----CLFIECSAKTRVN------------------VQQCFEELVLKIL 177 (210)
Q Consensus 151 ~-----~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~ 177 (210)
+ ++++++||+++.| +.++++.+.+.+.
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 5 6799999999987 6677777666553
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=3.6e-20 Score=145.95 Aligned_cols=163 Identities=19% Similarity=0.110 Sum_probs=106.4
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhhc
Q 028353 14 LFK-LLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSY 82 (210)
Q Consensus 14 ~~k-i~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~ 82 (210)
.++ |+++|++|+|||||+++|++..+.. ..+....+.....+.+++ ..+.+|||+|... +... ...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence 345 9999999999999999999876521 112222223445566666 4678999999622 1222 224
Q ss_pred ccCccEEEEEEECCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHh---CCeEEE
Q 028353 83 YRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREY---GCLFIE 156 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~ 156 (210)
+..+|++++|+|++++. ....... |...+... ...+.|+++|+||+|+...... ..+.+..++... +.++++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 67899999999999876 4444433 55555442 2356899999999998654311 112233344444 236899
Q ss_pred EccCCCCCHHHHHHHHHHHHHcCCC
Q 028353 157 CSAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
+||+++.|+++++++|.+.+.....
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred EECCCCcCHHHHHHHHHHHhcccCC
Confidence 9999999999999999998765543
No 162
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=4.1e-21 Score=150.96 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=87.8
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
.+.+.+||++|++.+...|..++++++++|+|+|+++ ..++..... |...+.......++|+|+++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEECh
Confidence 4789999999999999999999999999999999999 778888887 44444433334679999999999
Q ss_pred CCCCCc----------------eecHHHHHHHHH-----------HhCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 131 DKESER----------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 131 Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|+.... ....+++..++. ..++.+++|||+++.||+++|+++.+.+++.
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 984221 145667776652 3356799999999999999999999988653
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=7.4e-23 Score=167.75 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=110.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+..+|+++|++++|||||+++|.+..+.... ++.+.++....+..+ ....+.||||||++.+...+...++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4678999999999999999999876543222 222222222222221 22368999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHH---HHHh--CCeEEEEccCCCCCH
Q 028353 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINF---AREY--GCLFIECSAKTRVNV 165 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i 165 (210)
|+|+++......... |. .+. ..++|+++++||+|++...... ..+...+ +..+ .++++++||++|.|+
T Consensus 82 VVDa~dg~~~qt~e~-l~-~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 82 VVAADDGVMKQTVES-IQ-HAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp ECBSSSCCCHHHHHH-HH-HHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEECCCCccHHHHHH-HH-HHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999999776655443 32 222 3568999999999996433211 1111111 1111 357999999999999
Q ss_pred HHHHHHHHHHHH
Q 028353 166 QQCFEELVLKIL 177 (210)
Q Consensus 166 ~~~~~~l~~~~~ 177 (210)
+++|+++...+.
T Consensus 156 ~eLle~I~~l~~ 167 (537)
T 3izy_P 156 MALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHhhh
Confidence 999999998764
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.9e-21 Score=162.53 Aligned_cols=152 Identities=15% Similarity=0.129 Sum_probs=102.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------------------------------CceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------------------------------TIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 61 (210)
...+||+++|++++|||||+++|++........ ..|.++......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 456899999999999999999998663321110 02333332233334455
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cH---HHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKES 134 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~ 134 (210)
..+.||||||++.+...+...++.+|++|+|+|++++. ++ ..... ...... ..+ .|+|||+||+|+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLAS----SLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHH----TTTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHH----HcCCCeEEEEEecccccc
Confidence 68999999999999988889999999999999999742 11 11111 111111 223 45999999999976
Q ss_pred Cceec----HHHHHHHHHHhC-----CeEEEEccCCCCCHHHH
Q 028353 135 ERVVT----KKEGINFAREYG-----CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 135 ~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (210)
..... .+++..++...+ ++++++||++|.|+.++
T Consensus 320 ~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 320 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 33222 233344444443 57999999999999876
No 165
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=8e-21 Score=147.41 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=93.6
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
..+.+.+||++|++.++..|..++++++++|+|||++ +..++..... |...+.......++|+++++||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEEC
Confidence 4578999999999999999999999999999999998 6788888877 4444443344567999999999
Q ss_pred CCCCCCc---------------eecHHHHHHHHHHh---------------------------CCeEEEEccCCCCCHHH
Q 028353 130 VDKESER---------------VVTKKEGINFAREY---------------------------GCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 130 ~Dl~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~Sa~~~~~i~~ 167 (210)
+|+...+ ....+++..++... .+.++++||++..||+.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 9984211 01355555554332 36689999999999999
Q ss_pred HHHHHHHHHHc
Q 028353 168 CFEELVLKILD 178 (210)
Q Consensus 168 ~~~~l~~~~~~ 178 (210)
+|..+.+.+++
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=1.2e-20 Score=156.93 Aligned_cols=157 Identities=20% Similarity=0.133 Sum_probs=105.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYV------------DVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~~ 75 (210)
+..+|+++|++++|||||+++|++..+....+ +.+..+..... .++.....++||||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765433221 22211110000 00011125899999999999
Q ss_pred ccchhhcccCccEEEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-------------
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------- 139 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------- 139 (210)
...+...++.+|++|+|+|+++. .+++.+. .+. ..++|+++++||+|+.......
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99888889999999999999994 4443332 122 2568999999999986432110
Q ss_pred ----H------HHHHHHHHHh---------------CCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 140 ----K------KEGINFAREY---------------GCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 140 ----~------~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
. .+........ .++++++||++|.|++++++++...+..
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 0111111222 2379999999999999999999987753
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.5e-21 Score=139.87 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=86.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A 86 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 86 (210)
....++|+++|++|||||||+++|.+..+.........+. ..+...+.+.+||+||+..+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4567999999999999999999999887644221111111 111144678999999999888777777665 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCce
Q 028353 87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERV 137 (210)
Q Consensus 87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~ 137 (210)
|++++|+|++ +..++..+..++...+.... ...++|+++|+||+|+.....
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 9999999999 88888888773333333211 235799999999999975543
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=2.2e-21 Score=157.83 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=90.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC----------------------C------CCCceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE----------------------L------SPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~----------------------~------~~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|++++|||||+++|+.. .+.. . ....+.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 56799999999999999999999742 1110 0 0011222222111222234
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCc-
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESER- 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~- 136 (210)
..+.+|||||++.|...+...+..+|++|+|+|+++.. +|+...+ +...+.. ....++| ++|++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~-~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVL-ARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHH-HHHTTCSSEEEEEECTTSTTCSS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHH-HHHcCCCEEEEEEECccCCCccc
Confidence 67899999999999988888899999999999999863 2221111 2222211 1124576 89999999995421
Q ss_pred -----eecHHHHHHHHHHh-------CCeEEEEccCCCCCHHHHH
Q 028353 137 -----VVTKKEGINFAREY-------GCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 137 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~ 169 (210)
....+++..++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11233456666655 4569999999999998765
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=4e-20 Score=160.85 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=110.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC-------CCCC--------CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD-------NFEE--------LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|++. .+.. ...+.+.++....+.++.....+.+|||||++.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 356799999999999999999999863 1100 1113444443333444555678999999999999
Q ss_pred ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC
Q 028353 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG 151 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 151 (210)
...+...++.+|++|+|+|+++....+. .. ++..+.. .++| +||++||+|+...... ..+++..++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rE-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HH-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HH-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 8888888999999999999998754333 23 3333332 3577 7899999999753221 2345666776665
Q ss_pred -----CeEEEEccCCC--------CCHHHHHHHHHHHHH
Q 028353 152 -----CLFIECSAKTR--------VNVQQCFEELVLKIL 177 (210)
Q Consensus 152 -----~~~~~~Sa~~~--------~~i~~~~~~l~~~~~ 177 (210)
++++++||++| .|+.++++.|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 57999999999 457888888776553
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=2.4e-21 Score=157.29 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=101.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCC----------------C------C------CceeeeEEEEEEECCeE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEEL----------------S------P------TIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~----------------~------~------~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|++++|||||+++|++. .+... . . ..+.+.......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45699999999999999999999864 11100 0 0 01222222222334455
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cHH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES 134 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (210)
..+.+|||||++.+...+...+..+|++|+|+|+++.. +|+ .... +..... ..++| +++|+||+|+..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~----~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence 68999999999999988888999999999999999763 221 2222 222222 23455 899999999963
Q ss_pred Cce----ecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHH
Q 028353 135 ERV----VTKKEGINFAREYG-----CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 135 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (210)
... ...+++..++...+ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 12344556666665 67999999999998754
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=5.8e-22 Score=161.21 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=103.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.+..+|+++|++++|||||+++|.+..+.... +....+.... .+......++||||||++.+...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~--~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY--HVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC--CCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE--EEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 35678999999999999999999865443211 1111111111 22222346899999999999999888899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHHH--HHHHHHHhC--CeEEEEccCCCCC
Q 028353 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKKE--GINFAREYG--CLFIECSAKTRVN 164 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~~ 164 (210)
+|+|+++....+.... | .... ..++|+++++||+|++... .+..+. ...+...++ ++++++||++|.|
T Consensus 80 LVVda~~g~~~qT~e~-l-~~~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEA-I-QHAK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEEETTTBSCTTTHHH-H-HHHH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EEeecccCccHHHHHH-H-HHHH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999998543222222 2 1121 3468999999999996432 111100 000111222 6899999999999
Q ss_pred HHHHHHHHHH
Q 028353 165 VQQCFEELVL 174 (210)
Q Consensus 165 i~~~~~~l~~ 174 (210)
++++|+++..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999864
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.6e-19 Score=132.16 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=101.7
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTL 78 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~ 78 (210)
+.....+|+++|++|||||||+++|.+..+ ..+.++.+.+.....+.+++ .+.+||+||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 445668999999999999999999998774 33344666555433343333 478999999742 1212
Q ss_pred hhhcc---cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhC--
Q 028353 79 TSSYY---RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYG-- 151 (210)
Q Consensus 79 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~-- 151 (210)
...++ ..++++++++|++++.+..... +...+. ..+.|+++++||+|+..... ...+.+..++...+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 22233 5789999999999876653211 222222 24678999999999864321 11344555555544
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 152 CLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+.++++||+++.|++++++++.+.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999887643
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=2.5e-20 Score=143.66 Aligned_cols=159 Identities=21% Similarity=0.150 Sum_probs=101.0
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCce----------------------eeeE------------
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----PTIG----------------------VDFK------------ 51 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-----~~~~----------------------~~~~------------ 51 (210)
....++|+|+|.+|||||||+++|++..+.+.. ..++ .+..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999998874211 1121 0000
Q ss_pred -----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhcccCccEEE-EEEECCCcccHHHHH
Q 028353 52 -----------VKYVDVG-GKKLKLAIWDTAGQER-------------FRTLTSSYYRGAQGII-MVYDVTRRDTFTNLS 105 (210)
Q Consensus 52 -----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 105 (210)
...+.+. .....+.+|||||... +...+..+++.++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000 0125799999999642 3345556777887666 799998765544332
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hC-CeEEEEccCCCCCHHHHHHHHHH
Q 028353 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE--YG-CLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
. |...+. ..+.|+++|+||+|+........+........ .+ .+++++||+++.|++++++++.+
T Consensus 183 ~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp H-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred H-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 2 333333 35689999999999965543222222110001 12 35889999999999999999887
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.80 E-value=5.2e-21 Score=159.42 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=82.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCe
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGK 60 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
....++|+++|++++|||||+++|++.... ......+.+.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999642100 00002234444444444555
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cH---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (210)
...+.||||||+..+...+...+..+|++|+|+|++++. .+ ..... .+..+. ..++| +|||+||+|+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~----~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLR----ALGISEIVVSVNKLDLM 328 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHH----HSSCCCEEEEEECGGGG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHH----HcCCCeEEEEEeccccc
Confidence 678999999999999988888899999999999998643 11 11111 222222 23455 89999999996
Q ss_pred CCceec----HHHHHHHH-HHhCC-----eEEEEccCCCCCHH
Q 028353 134 SERVVT----KKEGINFA-REYGC-----LFIECSAKTRVNVQ 166 (210)
Q Consensus 134 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 166 (210)
...... .+++..+. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 522211 22334444 33344 69999999999998
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.80 E-value=5.4e-19 Score=145.43 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=81.6
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------CCCCceeeeEEEEEEECCeEEEEEEEe
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE---------------------LSPTIGVDFKVKYVDVGGKKLKLAIWD 68 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D 68 (210)
+.....+|+++|++|+|||||+++|+...... .....+.++......+....+.+++||
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liD 88 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLD 88 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEEC
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEE
Confidence 34567999999999999999999998631100 001222222222223333457899999
Q ss_pred CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
|||+..+...+...++.+|++|+|+|+++...... .. +... ....++|+++++||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~----~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEV----TRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHH----HTTTTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHH----HHHcCCCEEEEEcCcCCccc
Confidence 99999988888888999999999999998754322 22 2222 22457899999999998643
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=8.2e-19 Score=132.78 Aligned_cols=123 Identities=19% Similarity=0.170 Sum_probs=82.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc-------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR------- 84 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~------- 84 (210)
...++|+++|++|+|||||+++|++..+.......+.+.......+......+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3679999999999999999999998876444443333332222222223458999999998776554333332
Q ss_pred --CccEEEEEEECCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCC
Q 028353 85 --GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 85 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~ 135 (210)
.+|++++|++++... +......|+..+.... .....|+++|+||+|+...
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987754 4333323666565432 2223599999999999544
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.9e-18 Score=146.02 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=83.2
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.....+|+|+|++|+|||||+++|++........ ..+.++......+....+.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 4567899999999999999999998433211000 01223333333333346789999999999
Q ss_pred ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
.+...+...++.+|++++|+|+++....... . +...+.. .++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHHH----ccCCEEEEecCCchh
Confidence 9888888899999999999999887554433 2 3333332 468999999999986
No 178
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=3.7e-18 Score=129.77 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=84.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh-------h--c
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS-------S--Y 82 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~--~ 82 (210)
...++|+++|.+|+|||||+++|++..+.......+.+.....+.+......+.+|||||...+..... . .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 357999999999999999999999888654444444444444444444456799999999866543221 1 1
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCc
Q 028353 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~ 136 (210)
...+|++++|+|++.. ++......|+..+.... ....+|+++|+||+|+...+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3478999999998763 34433333666665432 12236999999999996554
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=2.6e-18 Score=145.63 Aligned_cols=120 Identities=17% Similarity=0.231 Sum_probs=83.8
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC------------C---CCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE------------L---SPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~--~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
.+.....+|+|+|++|+|||||+++|+.. .+.. . ....+.+.......+....+.+++|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 34567899999999999999999999832 1100 0 00112222211222222357899999999
Q ss_pred ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
+..+...+...++.+|++|+|+|+++..+...... |.. +. ..++|+++|+||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~-~~----~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQ-AE----KYKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHH-HH----HTTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHH-HH----HcCCCEEEEEECCCccc
Confidence 99988888889999999999999999888776654 543 22 24689999999999864
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=1.4e-18 Score=147.28 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=108.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--------------eeE--------------------------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--------------DFK-------------------------- 51 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~--------------~~~-------------------------- 51 (210)
...++|+|+|++|+|||||+|+|++.........+++ +..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4579999999999999999999998876544332221 000
Q ss_pred ---------------EEEEEECCeE--EEEEEEeCCCccc---cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHH
Q 028353 52 ---------------VKYVDVGGKK--LKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKE 111 (210)
Q Consensus 52 ---------------~~~~~~~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 111 (210)
...+..+... ..+.+|||||... ....+..++..+|++++|+|++++.+...... |...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence 0000000000 2589999999654 33455677889999999999999887766544 5444
Q ss_pred HhhhccCCCCcEEEEEeCCCCCCCceecHH----------HHHHH----H-HH--------hCCeEEEEccC--------
Q 028353 112 IDLYSTNQDCIKLLVGNKVDKESERVVTKK----------EGINF----A-RE--------YGCLFIECSAK-------- 160 (210)
Q Consensus 112 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~Sa~-------- 160 (210)
+. ..+.|+++|+||+|+.....+..+ .+... . .. ...+++++||+
T Consensus 226 l~----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IK----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TT----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HH----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 43 236789999999998543311110 11111 1 11 12369999999
Q ss_pred ------CCCCHHHHHHHHHHHHHcCC
Q 028353 161 ------TRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 161 ------~~~~i~~~~~~l~~~~~~~~ 180 (210)
++.|+++++..+.+.+.+..
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred CchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998876543
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=8.9e-18 Score=134.06 Aligned_cols=160 Identities=23% Similarity=0.226 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchh---hccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----RTLTS---SYYR 84 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~~ 84 (210)
..|+++|++|||||||++.|++.... ..++ +...+ .-.+..++ ...+.+||+||.... ..+.. ..+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 35789999999999999999977431 1122 12222 12223332 246889999996431 11212 2245
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (210)
.++.+++++|++ ...+..+.. |...+..+.. -...|.++|+||+|+... ...+.........+.+++.+||+++.
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 799999999998 556666655 4444443321 124789999999998654 33344455555667899999999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 028353 164 NVQQCFEELVLKILDTPS 181 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~ 181 (210)
|+++++++|.+.+.+.+.
T Consensus 311 gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 311 GLPALKEALHALVRSTPP 328 (416)
T ss_dssp THHHHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 999999999999987654
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=3.3e-18 Score=132.75 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=99.9
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----Ccee-eeEEE-------------------------------
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGV-DFKVK------------------------------- 53 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~-~~~~~------------------------------- 53 (210)
.....+|+|+|++|+|||||+++|++..+.+... .++. .....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3456899999999999999999999887622111 1100 00000
Q ss_pred ---------------------EEE-ECCeEEEEEEEeCCCccc-------------cccchhhcccCccEEEEEEECCCc
Q 028353 54 ---------------------YVD-VGGKKLKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRR 98 (210)
Q Consensus 54 ---------------------~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~ 98 (210)
.+. .......+.+|||||... +...+..++..+|++++|+|+++.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 011124689999999653 334556678899999999997543
Q ss_pred ccH-HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC---C---CCCHHHHHHH
Q 028353 99 DTF-TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK---T---RVNVQQCFEE 171 (210)
Q Consensus 99 ~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~ 171 (210)
... ..... +...+. ..+.|+++|+||+|+........+.+.......+..++++++. + +.|+.+++..
T Consensus 181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211 11111 333332 3578999999999996554322222221111122456666655 4 7899999999
Q ss_pred HHHHHHcCCC
Q 028353 172 LVLKILDTPS 181 (210)
Q Consensus 172 l~~~~~~~~~ 181 (210)
+.+.+.....
T Consensus 256 ~~~~~~~~~~ 265 (315)
T 1jwy_B 256 EILYFKNHPI 265 (315)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHhCCCc
Confidence 9888866543
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=5.2e-19 Score=136.26 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=88.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC-CCCCCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD-NFEELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER 74 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 74 (210)
...++|+++|++|+|||||+++|.+. .++... ++.........+..++....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 333221 11111111112222344578999999997 44
Q ss_pred cccchh-------hccc-------------CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 75 FRTLTS-------SYYR-------------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
+..... .+++ .+++++++.+.+. .+++.... ..+... ...+++++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l--~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI--HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH--TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH--HhcCCEEEEEEeCCCCC
Confidence 443332 2222 2334555555432 12333321 222222 24579999999999975
Q ss_pred Ccee--cHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028353 135 ERVV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+.+ ..+++..++...+++++++||+++ |++++|.++.+.+.+..+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 4433 346778888899999999999999 9999999999999765543
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=1e-17 Score=142.02 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=83.7
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhc--CCCCCC---CC------------CceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL---SP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~--~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+.....+|+|+|++|+|||||+++|+. +.+... .. ..+.+.......+....+.+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 456679999999999999999999984 222100 00 1112221111222223478999999999
Q ss_pred cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
..+...+...++.+|++|+|+|+++..+...... |.. +.. .++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCcccc
Confidence 9988888888999999999999999887766544 543 322 46899999999998643
No 185
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=135.90 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=84.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CC--------CceeeeEEEEEEECCeEEEEEEEeCCCccccc------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SP--------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------ 76 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------ 76 (210)
...++|+|+|++|+|||||++.|++..+... .. +.........+...+....+++||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 4568899999999999999999998766321 11 11111111111113334578999999965431
Q ss_pred -c------------------chhhcccCccEEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 77 -T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 77 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
. +...++..+++.+++|..... .++......|+..+. .++|+|+|+||+|+...+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence 1 123345555555555554432 344444323555443 368999999999997655
Q ss_pred eecH--HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028353 137 VVTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
.+.. +.+..++...+++++++|++++.+++++|..+...+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 5544 667788888899999999999999998887776543
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=1.4e-18 Score=137.23 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=101.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee---e-eE-------------------------------------
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV---D-FK------------------------------------- 51 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~---~-~~------------------------------------- 51 (210)
...+|+|+|++|||||||+++|++..+.+......+ + ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999876332221100 0 00
Q ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcccc-------------ccchhhcccCccEEEEEEECCCcccHHHHH
Q 028353 52 ------------VKYVDV-GGKKLKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLS 105 (210)
Q Consensus 52 ------------~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 105 (210)
...+.+ ......+.+|||||...+ ......++.++|++|+|+|..+.......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~- 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence 000000 011235899999997665 44566778999999999987665433222
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028353 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (210)
|+..+.. ....+.|+++|+||+|+........+....+....+.+|++++++.+.++++.+.+.
T Consensus 192 --~~~l~~~-~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 --AIKISRE-VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp --HHHHHHH-SCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred --HHHHHHH-hcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 3333333 234568999999999997655444444444444556789999999998887765543
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=5e-17 Score=137.98 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=84.0
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC------------CCC---CceeeeEEE--EEEE-----CCeEEEE
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE------------LSP---TIGVDFKVK--YVDV-----GGKKLKL 64 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~--~~~~------------~~~---~~~~~~~~~--~~~~-----~~~~~~~ 64 (210)
.+..+..+|+|+|+.++|||||+++|+.. .+.. ..+ ..+.+.... .+.. ++..+.+
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 34567789999999999999999999742 1111 000 112222222 1222 2234889
Q ss_pred EEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 65 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
+||||||+..+...+...++.+|++|+|+|+++......... |.. .. ..++|+++|+||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~-~~----~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQ-AN----KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEeCCCccc
Confidence 999999999988888889999999999999998866554433 432 22 34689999999999854
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=2.4e-18 Score=136.97 Aligned_cols=84 Identities=29% Similarity=0.352 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD-------------------VGG-KKLKLAIWDTAG 71 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g 71 (210)
++|+++|.||||||||+|+|++.... ..++ |...+.....+. +++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987621 1222 222222221111 122 247899999999
Q ss_pred ccc----cccchh---hcccCccEEEEEEECCCc
Q 028353 72 QER----FRTLTS---SYYRGAQGIIMVYDVTRR 98 (210)
Q Consensus 72 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 98 (210)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 222222 457899999999999885
No 189
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.71 E-value=1.6e-17 Score=131.68 Aligned_cols=123 Identities=20% Similarity=0.155 Sum_probs=96.2
Q ss_pred EEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcE
Q 028353 54 YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIK 123 (210)
Q Consensus 54 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ 123 (210)
.+.++ .+.+.+||++|++.+...|..++++++++|+|||+++ ..+|..+.. |+..+.......++|+
T Consensus 211 ~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 211 KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCE
T ss_pred EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeE
Confidence 34444 3789999999999999999999999999999999999 889999888 6666654334567999
Q ss_pred EEEEeCCCCCCCce---e---------------------------cHHHHHHHH-----HH--------hCCeEEEEccC
Q 028353 124 LLVGNKVDKESERV---V---------------------------TKKEGINFA-----RE--------YGCLFIECSAK 160 (210)
Q Consensus 124 ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 160 (210)
+||+||+|+...+. . ..+++..++ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999843221 1 134555553 21 24568899999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 028353 161 TRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (210)
++.||+++|.++.+.+++.
T Consensus 368 d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=1.5e-17 Score=128.23 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=103.0
Q ss_pred HHHHHHhcCCCC-CCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc-cHHHHH
Q 028353 29 SLLLSFTSDNFE-ELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLS 105 (210)
Q Consensus 29 tli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 105 (210)
+|+.++..+.|. ..+ +|.+..+. ..+..++ .+.+||+ ++.+..++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888886 444 57885443 2222222 6899999 8889999999999999999999999987 677666
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEccCCCCCHHHHHHHHH
Q 028353 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
. |+..+.. .++|+++|+||+|+.+.+.+ +++..++..++ .+++++||+++.|++++|.++.
T Consensus 106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 6 7776653 47899999999999754432 45667777777 8999999999999999998764
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=2.4e-16 Score=130.27 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=85.6
Q ss_pred cccceeeEEEEEcCCCCcHHHHHHHHhcC---------------------CCCCCCCCceeeeEEEEEEECCeEEEEEEE
Q 028353 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD---------------------NFEELSPTIGVDFKVKYVDVGGKKLKLAIW 67 (210)
Q Consensus 9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (210)
.+..+.-||+|+|+.++|||||..+|+.. ++.+....-+.++......+.+..+.++|+
T Consensus 26 ~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlI 105 (548)
T 3vqt_A 26 REAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLL 105 (548)
T ss_dssp HHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEE
T ss_pred hcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEE
Confidence 34457789999999999999999999621 111111123333333333444456789999
Q ss_pred eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
||||+..|.......++-+|++|+|+|+...-.-+.... |.... ..++|.++++||+|.+..
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a~-----~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVCR-----MRATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCCEEEEEECTTSCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHHH-----HhCCceEEEEecccchhc
Confidence 999999999999999999999999999999876655444 54333 357899999999998543
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=1e-16 Score=118.14 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=95.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-Cceee--------------eEEEEEEE----------------CCeE
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVD--------------FKVKYVDV----------------GGKK 61 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~--------------~~~~~~~~----------------~~~~ 61 (210)
...+|+++|++|||||||+++|.......... ....+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999998653211100 00000 00011111 1123
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK 141 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (210)
+.+.+|||+|...... .+....+.+++|+|+.+...... . +... .+.|+++|+||+|+........+
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~~--~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVE--K-HPEI-------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHH--H-CHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhhh--h-hhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence 5678999998511111 11125688999999887643211 1 1111 13688999999998543223455
Q ss_pred HHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028353 142 EGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 142 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
++..++... +.+++++||++|.|++++|+++.+.+.+.
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 555565554 47899999999999999999999987543
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.67 E-value=4.6e-17 Score=128.24 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=70.7
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 140 (210)
.+.+.||||||... .....+..+|++++|+|....+....+.. ...+.|+++|+||+|+........
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~----------~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK----------GVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT----------TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH----------hHhhcCCEEEEECCCCcChhHHHH
Confidence 36789999999533 23344588999999999887655433211 012358999999999854322211
Q ss_pred --HHHHHHHHH-------hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 141 --KEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 141 --~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
++....... ++.+++++||++|.|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111111111 15789999999999999999999988754
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.65 E-value=3e-18 Score=126.78 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=90.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE------------EEEEEEC-Ce------------------
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK------------VKYVDVG-GK------------------ 60 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~------------~~~~~~~-~~------------------ 60 (210)
...+|+|+|++|||||||+++|....+...+. +.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 56899999999999999999999775544222 2222221 1111111 10
Q ss_pred -EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028353 61 -KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT 139 (210)
Q Consensus 61 -~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (210)
...+.++|++|.-... ..+-...+..+.++|+......... +... ...|.++|+||+|+.......
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~-------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGI-------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHH-------HTTCSEEEEECGGGHHHHTCC
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhH-------hhcCCEEEEeccccCchhHHH
Confidence 1134455555521100 0011123445566664332211100 1111 135789999999986443345
Q ss_pred HHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 140 KKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 140 ~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.+++..++... +++++++||++|.|++++|+++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 56666666654 5789999999999999999999988754
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=7e-15 Score=115.10 Aligned_cols=143 Identities=21% Similarity=0.197 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQERFR 76 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~ 76 (210)
++|+++|.||||||||+++|++..+. ..++ |...+... +.+++. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~--v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEE--EecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999999987631 2222 33332222 233332 1579999999976543
Q ss_pred ----cc---hhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHH----------------------------
Q 028353 77 ----TL---TSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKE---------------------------- 111 (210)
Q Consensus 77 ----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~---------------------------- 111 (210)
.+ ....++.+|++++|+|+++. +.+..+.. +..+
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~ 159 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEAK 159 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence 22 22347899999999999863 22222221 1111
Q ss_pred ------------Hh-------------------hhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 112 ------------ID-------------------LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 112 ------------~~-------------------~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
+. .+.....+|+++++|+.|.........+.+..++...+.+++++||+
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 11 11122358999999999864322234566788888889999999965
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=1.5e-17 Score=131.02 Aligned_cols=158 Identities=21% Similarity=0.163 Sum_probs=92.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----Ccee----------------------eeE-------------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGV----------------------DFK------------- 51 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~----------------------~~~------------- 51 (210)
....+|+|+|.+|||||||+++|++.++.+... .++. ++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999988742211 1110 000
Q ss_pred ----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhcccCc-cEEEEEEECCCcccHHHHHH
Q 028353 52 ----------VKYVDVG-GKKLKLAIWDTAGQER-------------FRTLTSSYYRGA-QGIIMVYDVTRRDTFTNLSD 106 (210)
Q Consensus 52 ----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~ 106 (210)
...+.+. .....+.||||||... +..+...++... +++++|.|++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0000000 1135699999999532 233444555555 45555666654322222111
Q ss_pred HHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CeEEEEccCCCCCHHHHHHHHHH
Q 028353 107 VWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN--FAREYG-CLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 107 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
+...+ ...+.|+++|+||+|+.+........... +....+ .+++++||+++.|++++++++.+
T Consensus 189 -i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 -VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred -HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22222 24578999999999996543311111110 001123 24788999999999999998876
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=1.3e-15 Score=131.61 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=86.6
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCC------------CCCC-----C--CCceeeeEEEEEE------------EC
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------FEEL-----S--PTIGVDFKVKYVD------------VG 58 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~------------~~~~-----~--~~~~~~~~~~~~~------------~~ 58 (210)
......||+|+|++++|||||+++|+... +... . .|.........+. .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 34567899999999999999999998641 1110 0 0222222222232 24
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
+..+.++||||||+..+...+...++.+|++|+|+|+++..++..... |.... ..++|+++|+||+|+.
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~-----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDRA 163 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHH-----HcCCCeEEEEECCCcc
Confidence 457899999999999999999999999999999999999988877654 54332 2468999999999985
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=7.4e-16 Score=127.47 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=80.9
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCe-------E-------------------
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGK-------K------------------- 61 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~------------------- 61 (210)
......+|+|+|.+|+|||||+|+|++..+. .....+.++.... +..+.. .
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE-EECCSSSEEECCC------------------CC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE-EEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 3456789999999999999999999998764 2222221111110 000000 0
Q ss_pred --------------EEEEEEeCCCccc-----------cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhc
Q 028353 62 --------------LKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS 116 (210)
Q Consensus 62 --------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 116 (210)
..+.||||||... +...+..++..+|++++|+|+++......... |+..+.
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~--- 215 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALR--- 215 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTT---
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHH---
Confidence 2589999999764 33455667889999999999988654444444 544443
Q ss_pred cCCCCcEEEEEeCCCCCCCc
Q 028353 117 TNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 117 ~~~~~p~ivv~nK~Dl~~~~ 136 (210)
..+.|+++|+||+|+....
T Consensus 216 -~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 216 -GHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -TCGGGEEEEEECGGGSCHH
T ss_pred -hcCCCEEEEEECCCccCHH
Confidence 3457999999999986543
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=6.1e-16 Score=130.16 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CC------------CCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD--NF------------EELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~--~~------------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
.||+|+|+.++|||||..+|+.. .. .+..+ .-|.++......+...++.++|+|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47999999999999999999621 11 11110 123444444445566677899999999999999
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.....++-+|++|+|+|+...-.-+.... |..... .++|.++++||+|.+.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v-~~~a~~-----~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRIL-FHALRK-----MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHH-HHHHHH-----HTCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHH-HHHHHH-----cCCCeEEEEecccccc
Confidence 99999999999999999998765444332 543333 3578899999999753
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=1.8e-14 Score=113.36 Aligned_cols=149 Identities=19% Similarity=0.143 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECC-------------------eEEEEEEEeCCCc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGG-------------------KKLKLAIWDTAGQ 72 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~ 72 (210)
++|+++|.||||||||+++|++... ...++ |...+.... .+.. ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 6899999999999999999997642 12222 222222222 2221 2357999999997
Q ss_pred ccccc----c---hhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHH-----------------------
Q 028353 73 ERFRT----L---TSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEI----------------------- 112 (210)
Q Consensus 73 ~~~~~----~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~----------------------- 112 (210)
....+ + ....++.+|++++|+|+++. +.+..+.. +...+
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~ 158 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADR 158 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccch
Confidence 65421 2 23347899999999999862 12221111 10000
Q ss_pred ----------------hh-------------------hccCCCCcEEEEEeCCCCC--CC-ceecHHHHHHHHHHhCCeE
Q 028353 113 ----------------DL-------------------YSTNQDCIKLLVGNKVDKE--SE-RVVTKKEGINFAREYGCLF 154 (210)
Q Consensus 113 ----------------~~-------------------~~~~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~ 154 (210)
.. +.....+|+++++|+.|.. +. .....+.+..++...+.++
T Consensus 159 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~v 238 (368)
T 2dby_A 159 ERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEV 238 (368)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeE
Confidence 00 0012247999999999742 22 1345667788888889999
Q ss_pred EEEccCCCCCHH
Q 028353 155 IECSAKTRVNVQ 166 (210)
Q Consensus 155 ~~~Sa~~~~~i~ 166 (210)
+++||+...++.
T Consensus 239 v~iSAk~E~el~ 250 (368)
T 2dby_A 239 VVVSARLEAELA 250 (368)
T ss_dssp EEECHHHHHHHH
T ss_pred EEeechhHHHHH
Confidence 999988743333
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.57 E-value=3.7e-14 Score=120.81 Aligned_cols=124 Identities=13% Similarity=0.128 Sum_probs=84.3
Q ss_pred CcccccccceeeEEEEEcCCCCcHHHHHHHHhcC--------C------CCCC---CCCceeeeEE--EEEEEC-----C
Q 028353 4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD--------N------FEEL---SPTIGVDFKV--KYVDVG-----G 59 (210)
Q Consensus 4 ~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~--------~------~~~~---~~~~~~~~~~--~~~~~~-----~ 59 (210)
.++...+.++.-||+|+|+.++|||||..+|+.. . +.+. ...-+.++.. ..+.+. .
T Consensus 3 ~m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~ 82 (709)
T 4fn5_A 3 HMARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQY 82 (709)
T ss_dssp ---CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCS
T ss_pred CCCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCC
Confidence 4555566788899999999999999999998621 1 1111 1122333322 222222 2
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028353 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (210)
..+.++|+|||||..|.......++-+|++|+|+|+...-.-+...- |..... .++|.++++||+|.+
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~-----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANK-----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH-----HTCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHH-----cCCCeEEEEcccccc
Confidence 36899999999999999999999999999999999998766554433 544433 368999999999975
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.57 E-value=4.3e-15 Score=112.15 Aligned_cols=113 Identities=16% Similarity=-0.001 Sum_probs=70.7
Q ss_pred EEEEEEeCCCccccccchh------hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.+|||||......... ..+.. +++++++|+............+...... ....+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEeccccccc
Confidence 5789999999865443211 23456 8999999987554433332211111111 11235799999999998644
Q ss_pred ceecHHHHHH----------------------------HHHHhC--CeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 136 RVVTKKEGIN----------------------------FAREYG--CLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 136 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
... +++.. ++...+ .+++++||+++.|++++++++.+.+..
T Consensus 187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 321 11111 123333 479999999999999999999987753
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=112.63 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=62.2
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028353 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK 141 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (210)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+....... .
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i------l~~~~ivVlNK~Dl~~~~~~~-~ 232 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI------IEMADLVAVTKSDGDLIVPAR-R 232 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHHH-H
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH------HhcCCEEEEeeecCCCchhHH-H
Confidence 56789999995322 2344678999999999987643322211 11 135789999999985321110 1
Q ss_pred HHHHHHH----------HhCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 142 EGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 142 ~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
....+.. ....+++.+||+++.|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1122211 12456899999999999999999988763
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=2.9e-15 Score=117.32 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=65.7
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 140 (210)
.+.+.+|||||...... .....+|++++|+|++....+..+.. .. .+.|.++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~----~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK----GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH----HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH----hh------hcccCEEEEECCCCCChHHHHH
Confidence 35789999999654332 24578999999999976543221110 00 1357899999999864322211
Q ss_pred --HHHHHHHHHh-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 141 --KEGINFAREY-------GCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 141 --~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
++........ ..+++++||+++.|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222221221 356899999999999999999998764
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.2e-14 Score=109.35 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=90.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------chhhccc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-------LTSSYYR 84 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~ 84 (210)
.-..+|+++|.||||||||+|+|++... .....+++|.......+...+.++.++|+||...... .....++
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3457999999999999999999998653 2223333443333333323345688899999533221 1233567
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC--------ceecHHHHHHHHHHhCCeEE
Q 028353 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE--------RVVTKKEGINFAREYGCLFI 155 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~ 155 (210)
.+|++++|+|++++..-... +...+... ..-...|.+++.||.|.... .....+++..+...+.+..-
T Consensus 149 ~ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred hcCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 89999999999987433222 22222221 11234677899999997321 23445566666555554322
Q ss_pred EEccCCCCCHHHHHH
Q 028353 156 ECSAKTRVNVQQCFE 170 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~ 170 (210)
++--..+.+.+++.+
T Consensus 226 pv~~~~nv~eddl~d 240 (376)
T 4a9a_A 226 EIAFRCDATVDDLID 240 (376)
T ss_dssp EEEECSCCCHHHHHH
T ss_pred CeeecccCCHHHHHH
Confidence 333334445555443
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.45 E-value=2.2e-13 Score=115.42 Aligned_cols=158 Identities=20% Similarity=0.141 Sum_probs=96.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee-----------------------------------------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF----------------------------------------- 50 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~----------------------------------------- 50 (210)
....+|+|+|.+++|||||+|+|++..+.+......+.+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 456799999999999999999999987632221111100
Q ss_pred -----------EEEEEEECCeEEEEEEEeCCCcccc-------------ccchhhcc-cCccEEEEEEECCCcccHHHHH
Q 028353 51 -----------KVKYVDVGGKKLKLAIWDTAGQERF-------------RTLTSSYY-RGAQGIIMVYDVTRRDTFTNLS 105 (210)
Q Consensus 51 -----------~~~~~~~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 105 (210)
....+...+ ...+.|+||||.... ......++ ..+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000011111 124789999995431 11222233 5789999999998764433322
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-H-HHHhC-CeEEEEccCCCCCHHHHHHHHHHH
Q 028353 106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-F-AREYG-CLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (210)
. +...+. ..+.|+++|+||+|+............. . ....+ .+++.+||+++.|++++++.+.+.
T Consensus 208 ~-ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp H-HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred H-HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2 333333 4578999999999996554332221110 0 00112 357889999999999999998873
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=7.9e-13 Score=101.78 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=76.8
Q ss_pred ccccccchhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHHHHH
Q 028353 72 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINFARE 149 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~ 149 (210)
++.+..+.+.+++++|++++|+|++++. ++..+.. |+..+.. .++|+++|+||+|+.+...+. .++...++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~ 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 4566677778899999999999999986 7877666 7766553 578999999999996543322 4455666777
Q ss_pred hCCeEEEEccCCCCCHHHHHHHHH
Q 028353 150 YGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (210)
.+.+++++||+++.|+++++..+.
T Consensus 141 ~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 141 AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHhhcc
Confidence 789999999999999999987753
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=1.6e-13 Score=107.18 Aligned_cols=104 Identities=8% Similarity=0.056 Sum_probs=63.5
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028353 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 140 (210)
.+.+.|+||+|..... ......+|.+++|+|+...+....+.. .+. ..+.++++||.|+........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~------~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF------ELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH------HHCSEEEEECCSTTCCHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh------ccccEEEEEchhccCchhHHH
Confidence 3568999999965322 233568999999999875432211111 011 235577789999743322222
Q ss_pred HHHHHHHHHh----------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 141 KEGINFAREY----------GCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 141 ~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
.....+.... ..+++.+||+++.|++++++.|.+.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223332211 356899999999999999999988653
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=96.21 Aligned_cols=106 Identities=9% Similarity=-0.032 Sum_probs=69.7
Q ss_pred CCccccccchhhcccCccEEEEEEECCCcccHHHHHHHH---HHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHHH
Q 028353 70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVW---AKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGIN 145 (210)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~ 145 (210)
+|+..++++|..++.++|++|||+|.+|.+.++ ....+ ...+.......++|++|++||. |++.. +...++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence 378889999999999999999999999987655 33324 2222221112578999999995 67533 44444433
Q ss_pred HHHH----hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 146 FARE----YGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 146 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.... ....+..|||.+|+|+.+.++||.+.+.+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 3221 23458999999999999999999877643
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=4.4e-11 Score=94.75 Aligned_cols=88 Identities=22% Similarity=0.211 Sum_probs=58.0
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~ 72 (210)
......+|+++|++|||||||+|.|++..... .++........-.+.+.+. ...+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 34556899999999999999999999876422 2232222222223334431 135889999994
Q ss_pred cc-------cccchhhcccCccEEEEEEECCC
Q 028353 73 ER-------FRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 73 ~~-------~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
.. +...+...++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 22234455789999999999864
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.26 E-value=4.9e-12 Score=95.01 Aligned_cols=107 Identities=9% Similarity=-0.028 Sum_probs=74.6
Q ss_pred CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHH---HHHhhhccCCCCcEEEEEeC-CCCCCCceecHHHHH
Q 028353 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA---KEIDLYSTNQDCIKLLVGNK-VDKESERVVTKKEGI 144 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 144 (210)
.+|+..++++|..++.++|++|||+|.+|.+.++ ....+. ..+.......++|++|++|| .|++.. +...++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence 4578889999999999999999999999998765 322232 23322111367899999996 687543 4444433
Q ss_pred HHHHH----hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028353 145 NFARE----YGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 145 ~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+.... ....+..|||.+|+|+.+.++|+.+.+.+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 33221 23448999999999999999999988743
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.24 E-value=6.6e-12 Score=99.25 Aligned_cols=91 Identities=23% Similarity=0.217 Sum_probs=51.5
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCcc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQE 73 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~ 73 (210)
.....++|+++|.+|||||||+++|++..+. ..++..........+.+.+. ...+.+||+||..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 3355689999999999999999999987652 12221111122222333332 2358999999976
Q ss_pred cccc-------chhhcccCccEEEEEEECCCccc
Q 028353 74 RFRT-------LTSSYYRGAQGIIMVYDVTRRDT 100 (210)
Q Consensus 74 ~~~~-------~~~~~~~~~d~~i~v~d~~~~~s 100 (210)
...+ .+...++.+|++++|+|+.+..+
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 5433 44567889999999999986543
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.10 E-value=1.6e-11 Score=96.93 Aligned_cols=141 Identities=15% Similarity=0.148 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC-----CCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD-----NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS 81 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~ 81 (210)
.+|+++|.+|+|||||+|+|++. ........+++|.....+.++.. +.++||||....... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 57999999999999999999975 22223334455555555555543 788999995432211 111
Q ss_pred cc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028353 82 YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
++ ...+.++++++......+..+. . +. .....+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~--~---l~-~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLA--R---LD-YIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HhcccccCceEEEEcCCceEEECCEE--E---EE-EccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 22 5679999999985432111111 0 11 123456899999999998544333 23334555566776666666
Q ss_pred CCCCCH
Q 028353 160 KTRVNV 165 (210)
Q Consensus 160 ~~~~~i 165 (210)
.+..++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 554443
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.96 E-value=8.2e-11 Score=92.86 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TS 80 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~ 80 (210)
.+|+++|.+|+|||||+|+|++.. .......+++|.....+.+... +.++||||....... ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998753 2222335566665555655543 789999995432211 11
Q ss_pred hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028353 81 SY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (210)
.+ ....+.++++++......+..+. . +. .....+.|+++++||.|....... ......+.+..+..+.+.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---~d-~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA--R---FD-YVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE--E---EE-EecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 11 35678889999875332211110 0 11 123456899999999998543322 2223444455566555444
Q ss_pred c
Q 028353 159 A 159 (210)
Q Consensus 159 a 159 (210)
+
T Consensus 311 ~ 311 (368)
T 3h2y_A 311 P 311 (368)
T ss_dssp H
T ss_pred h
Confidence 3
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=1.8e-09 Score=86.12 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=72.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECC--eEEEEEEEeCCCccccc----------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGG--KKLKLAIWDTAGQERFR---------- 76 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~---------- 76 (210)
...++++|+|++|+|||||++.|.+..+..... ..+.......+.... ....++++|++|.....
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 345679999999999999999999875422111 122222222222222 23478899998743210
Q ss_pred ----cch----hh---------cccC--ccE-EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 77 ----TLT----SS---------YYRG--AQG-IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 77 ----~~~----~~---------~~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
..+ .. .+.. +|+ ++++.|+..+-+-..+. ++..+ ..++|+|+|.||+|.....
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die--ilk~L-----~~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV--TMKKL-----DSKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH--HHHHT-----CSCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH--HHHHH-----hhCCCEEEEEcchhccchH
Confidence 001 01 1112 233 55566665544333321 22222 2578999999999975443
Q ss_pred eec--HHHHHHHHHHhCCeEEEEcc
Q 028353 137 VVT--KKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 137 ~~~--~~~~~~~~~~~~~~~~~~Sa 159 (210)
.+. ...+.......|++++.+|.
T Consensus 193 E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 193 ELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHcCCcEEecCC
Confidence 321 11222223345677777764
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.89 E-value=2.3e-09 Score=87.49 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=84.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh------cCCC----CCC-CCCc-----------eeeeEEEEEE-------------
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFT------SDNF----EEL-SPTI-----------GVDFKVKYVD------------- 56 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~------~~~~----~~~-~~~~-----------~~~~~~~~~~------------- 56 (210)
.....|+|+|.+||||||++++|. +.+. .+. .+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999997 3321 000 0100 0111100000
Q ss_pred ECCeEEEEEEEeCCCcccccc-chhh---c--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeC
Q 028353 57 VGGKKLKLAIWDTAGQERFRT-LTSS---Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNK 129 (210)
Q Consensus 57 ~~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK 129 (210)
.....+.+.|+||||...... .+.. . +..+|.+++|+|+......... ...+.. .+|+ ++|+||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK 249 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence 000235689999999654321 1111 1 2278999999999876432211 122222 1464 899999
Q ss_pred CCCCCCceecHHHHHHHHHHhCCeE------------------EEEccCCCCC-HHHHHHHHHHH
Q 028353 130 VDKESERVVTKKEGINFAREYGCLF------------------IECSAKTRVN-VQQCFEELVLK 175 (210)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~ 175 (210)
.|...... .+.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99863321 1222334455553 3368888988 98888888765
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.89 E-value=7.7e-09 Score=78.19 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=72.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------C-CceeeeEEEEEEECCeE--EEEEEEeCCCccccc-------
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------P-TIGVDFKVKYVDVGGKK--LKLAIWDTAGQERFR------- 76 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~--~~~~l~D~~g~~~~~------- 76 (210)
.++++++|++|+|||||++.|++...+... + ..........+...... ..++++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999865332111 0 00001111222222222 367899999832100
Q ss_pred ---cc------------------hhhcccCccEEEEEEECC-CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 77 ---TL------------------TSSYYRGAQGIIMVYDVT-RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 77 ---~~------------------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.. -+..+..+.+.++++|.. .+-.-... . ++..+.. . +++++|.+|.|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~-~l~~L~~----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-E-FMKHLSK----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-H-HHHHHHT----T-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-H-HHHHHHh----c-CcEEEEEeccccCC
Confidence 00 011233468888999855 33222221 1 3333332 2 89999999999864
Q ss_pred Cceec--HHHHHHHHHHhCCeEEE
Q 028353 135 ERVVT--KKEGINFAREYGCLFIE 156 (210)
Q Consensus 135 ~~~~~--~~~~~~~~~~~~~~~~~ 156 (210)
..... ...+.......++.+++
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 43322 23344455566777664
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=3.3e-09 Score=83.75 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=71.6
Q ss_pred CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH----H
Q 028353 71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN----F 146 (210)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~ 146 (210)
..+.|...+..+.+.+|++++|+|++++. ..|...+..+. .++|+++|+||+|+.... ...+.... +
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYS 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHH
Confidence 34677888888888999999999999853 12555555543 368999999999996443 22233333 3
Q ss_pred HHHhCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 028353 147 AREYGC---LFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 147 ~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
+...+. +++.+||+++.|++++++.+.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 556677 799999999999999999997755
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.83 E-value=2.6e-08 Score=79.43 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=85.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceeee--EEEEEEECCeEEEEEEEeCCCcccccc----c-hhhcc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRT----L-TSSYY 83 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~----~-~~~~~ 83 (210)
....++|+|++|||||||+|.+.+...+.... ..+... ....+. ......+.+||++|...... . ....+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34589999999999999999999743221111 111111 111111 11112478899998532111 1 11123
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceec----HHHHHHHH----H
Q 028353 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVT----KKEGINFA----R 148 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~----~~~~~~~~----~ 148 (210)
...+.+++ ++...... ..+ . +...+. ..+.|+++|.||.|+. .-.... .+.+..+. .
T Consensus 147 ~~~~~~~~-lS~G~~~k-qrv-~-la~aL~----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKK-NDI-D-IAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp GGCSEEEE-EESSCCCH-HHH-H-HHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccH-HHH-H-HHHHHH----hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455554 77653221 111 1 222222 2357999999999862 111111 22233332 1
Q ss_pred HhC---CeEEEEcc--CCCCCHHHHHHHHHHHHHcCCC
Q 028353 149 EYG---CLFIECSA--KTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 149 ~~~---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
..+ ..++.+|+ .++.|++++.+.+.+.+.+.+.
T Consensus 219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 222 25788999 5666799999999988865553
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=3.8e-09 Score=80.40 Aligned_cols=59 Identities=29% Similarity=0.450 Sum_probs=38.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
...++|+++|.||+|||||+|+|.+.....+...+++|.....+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999887666666666655444444433 47899999964
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.78 E-value=2.5e-09 Score=80.53 Aligned_cols=57 Identities=18% Similarity=0.358 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
++++++|.+|+|||||+|+|.+.......++++.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999887655555666665544444332 478999999654
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=4.1e-09 Score=83.23 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=70.2
Q ss_pred CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH----
Q 028353 71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF---- 146 (210)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---- 146 (210)
.++.|.+.+..++..++++++|+|+++..+. |...+..+. .+.|+++|+||+|+..... ..+....+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s------~~~~l~~~l--~~~piilV~NK~DLl~~~~-~~~~~~~~l~~~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS------FIPGLPRFA--ADNPILLVGNKADLLPRSV-KYPKLLRWMRRM 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG------CCSSHHHHC--TTSCEEEEEECGGGSCTTC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc------hhhHHHHHh--CCCCEEEEEEChhcCCCcc-CHHHHHHHHHHH
Confidence 4677888888888899999999999997741 333333332 3689999999999965432 22333333
Q ss_pred HHHhCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 028353 147 AREYGC---LFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 147 ~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (210)
+...+. +++.+||+++.|++++++.+.+..
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 455676 689999999999999999987765
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=1.6e-08 Score=76.91 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=68.6
Q ss_pred EeCCCcc-ccccchhhcccCccEEEEEEECCCcccHHH--HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH
Q 028353 67 WDTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN--LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG 143 (210)
Q Consensus 67 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (210)
-..|||. .........+..+|+++.|+|+.++.+... +.. | + .++|.++|+||+|+.+.. ..+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~-~---l------~~kp~ilVlNK~DL~~~~--~~~~~ 71 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED-I---L------KNKPRIMLLNKADKADAA--VTQQW 71 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHH-H---C------SSSCEEEEEECGGGSCHH--HHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHH-H---H------CCCCEEEEEECcccCCHH--HHHHH
Confidence 3578875 333455667889999999999999877642 222 2 1 468999999999996531 12223
Q ss_pred HHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028353 144 INFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 144 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (210)
..+....+.+++.+||+++.|++++++.+.+.+.
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 3444456789999999999999999998877764
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=2.2e-07 Score=74.56 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=51.2
Q ss_pred EEEEEEeCCCccccccch----h--hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.++||+|........ . .....+|.+++|+|+.......... ..+.. .-.+..||.||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~----~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKE----ATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHH----SCTTEEEEEECCSSCSS
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHh----hCCCeEEEEECCCCccc
Confidence 568899999954322211 1 1123578999999988754332221 22221 11345689999998533
Q ss_pred ceecHHHHHHHHHHhCCeEEEEcc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
. ..+..+....+.|+.+++.
T Consensus 255 g----G~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 G----GGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp H----HHHHHHHHTTCCCEEEEEC
T ss_pred c----cHHHHHHHHHCCCEEEEEc
Confidence 2 2344555667889877775
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.35 E-value=3.5e-07 Score=70.16 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=61.7
Q ss_pred chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCeEE
Q 028353 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLFI 155 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 155 (210)
+.+..+.++|.+++|+|+.++..-......++.... ..++|.++|+||+|+.+... ...+....+....|.+++
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 445568899999999999987654433332433332 45788899999999976532 112344555556788999
Q ss_pred EEccCCCCCHHHHHH
Q 028353 156 ECSAKTRVNVQQCFE 170 (210)
Q Consensus 156 ~~Sa~~~~~i~~~~~ 170 (210)
.+||.++.|+++++.
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999999888776554
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.35 E-value=6.5e-07 Score=74.38 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=40.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYV--DV-GGKKLKLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~ 74 (210)
...++|+|+|.||+|||||+|+|++.... .... +.+.+.....+ .. ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 46789999999999999999999987632 2222 22323222222 11 12234688999999643
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=3e-07 Score=69.12 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=61.8
Q ss_pred CCCcccc-ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028353 69 TAGQERF-RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA 147 (210)
Q Consensus 69 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 147 (210)
.|||... .......+.++|+++.|+|+.++.+..... +. .. ++|.++|+||+|+.+... .+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~-ll---~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VD-FS---RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SC-CT---TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HH-hc---CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 4665432 234556788999999999999987654321 11 11 689999999999965321 22334445
Q ss_pred HHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028353 148 REYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (210)
...+.++ .+||+++.|+++++..+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 5667888 9999999999998876644
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.26 E-value=7.7e-07 Score=71.34 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCccc--ccc----chhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028353 61 KLKLAIWDTAGQER--FRT----LTSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 61 ~~~~~l~D~~g~~~--~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (210)
.+.+.++||||... ... ..... ....+.+++|+|+........... .+.. .-.+..||.||.|.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~----~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQ----ASPIGSVIITKMDG 250 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHH----HCSSEEEEEECGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhc----ccCCcEEEEecccc
Confidence 35678899999544 221 11111 124689999999987544333222 2221 11356789999997
Q ss_pred CCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028353 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (210)
.. ....+.......+.|+.+++. |+++
T Consensus 251 ~a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 251 TA----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp CS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred cc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 52 223455566677999888876 5443
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.17 E-value=3.2e-06 Score=67.92 Aligned_cols=85 Identities=20% Similarity=0.154 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCcccccc-ch---h--hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCC-c-EEEEEeCCCC
Q 028353 61 KLKLAIWDTAGQERFRT-LT---S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-I-KLLVGNKVDK 132 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl 132 (210)
.+.+.++||||...... .. . ..+..+|.+++|+|+..... ... ....+. ... | ..+|.||.|.
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH-----TTSCSCEEEEEECSSS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh-----hcccCCeEEEEeCCCC
Confidence 45688999999654321 11 1 11236899999999876542 211 111121 224 4 7899999997
Q ss_pred CCCceecHHHHHHHHHHhCCeEEEEc
Q 028353 133 ESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (210)
.... ..+..+....+.|+..++
T Consensus 251 ~~~~----g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 251 SAKG----GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp CSTT----HHHHHHHHHSSCCEEEEC
T ss_pred ccch----HHHHHHHHHHCCCEEEee
Confidence 5321 123445666787766654
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.11 E-value=2e-06 Score=65.78 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=54.5
Q ss_pred EEEEEEEeCCCccc--ccc-chh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCC
Q 028353 61 KLKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVD 131 (210)
Q Consensus 61 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 131 (210)
.+.+.++||||... ... ... ..+..+|.+++|+|+.... .... ....+.. ..+ ..+|.||.|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh-----hCCCCEEEEeCCC
Confidence 35688999999765 321 111 1234689999999987532 2222 1122221 244 678899999
Q ss_pred CCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028353 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (210)
.... ...+..+....+.|+..++ .|.++++
T Consensus 251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 251 GTAK----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred CCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 7432 2345566777888987776 4555443
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.09 E-value=5.7e-06 Score=69.44 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~~ 40 (210)
.|+|+|++|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999986433
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.98 E-value=2.7e-05 Score=60.92 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=55.8
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCeEEEEcc
Q 028353 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa 159 (210)
..+.++|.+++|.+. ++..-......++.... ..++|.++|+||+|+.+.... ..+.........|.+++.+||
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence 357889999988665 45443333232433332 235778999999999754321 122233444567889999999
Q ss_pred CCCCCHHHHHHH
Q 028353 160 KTRVNVQQCFEE 171 (210)
Q Consensus 160 ~~~~~i~~~~~~ 171 (210)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999987654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.92 E-value=9.6e-06 Score=62.86 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=49.6
Q ss_pred EEEEEeCCCccccccchhh------cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028353 63 KLAIWDTAGQERFRTLTSS------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (210)
.+.++|++|.......... ..-..|-.+++.|+..... +.. ....+.. ..+ .-+++.||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~-~~~~~~~---~~~-it~iilTKlD~~a~- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVE-QARQFNE---AVK-IDGIILTKLDADAR- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHH---HSC-CCEEEEECGGGCSC-
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHH-HHHHHHH---hcC-CCEEEEeCcCCccc-
Confidence 3567899996432221111 1124688899999776532 222 1122221 112 23788999996322
Q ss_pred eecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028353 137 VVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (210)
.-.+..+....+.|+..++ +|.+++
T Consensus 284 ---~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 284 ---GGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp ---CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred ---hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 2234566777899988777 555543
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.89 E-value=6.3e-07 Score=73.00 Aligned_cols=101 Identities=15% Similarity=0.069 Sum_probs=56.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccch--------hh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLT--------SS 81 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~~ 81 (210)
.....|+++|.+||||||+.++|.........++.............+......+||..|... ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999987442211111221110000000111112345788888632 22222 34
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHhh
Q 028353 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL 114 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 114 (210)
++...++.++|+|.++. +...... |...+..
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~ 147 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ 147 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh
Confidence 45567888999999987 4444443 6655554
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.83 E-value=3.3e-05 Score=62.14 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
....-|.|+|++++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4567789999999999999999985
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.59 E-value=3.6e-05 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.50 E-value=0.00043 Score=55.64 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCcccccc-chh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028353 61 KLKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (210)
.+.+.|+||||...... ... ..+..++.+++|+|+......... ...+.. ..+ .-+|.||.|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc-----cCCCeEEEEecCCCC
Confidence 35688999999654322 111 113468899999998755332211 112221 123 24789999974
Q ss_pred CCceecHHHHHHHHHHhCCeEEEE
Q 028353 134 SERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
... ..+..+....+.|+..+
T Consensus 254 ~~~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 254 ARG----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp SCC----THHHHHHHHHCCCEEEE
T ss_pred ccH----HHHHHHHHHHCCCeEEE
Confidence 221 13345555567664444
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=5.6e-05 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.47 E-value=6.5e-05 Score=53.77 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=22.7
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
+....+....--|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ------CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 333444445567899999999999999999854
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=4.9e-05 Score=58.25 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-.++|+|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998654
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.44 E-value=6.7e-05 Score=53.79 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.43 E-value=0.00012 Score=57.20 Aligned_cols=24 Identities=42% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997654
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.37 E-value=9.6e-05 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.|+++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999865
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.36 E-value=9.4e-05 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999864
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=9.2e-05 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999854
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.34 E-value=0.00048 Score=52.72 Aligned_cols=23 Identities=48% Similarity=0.732 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-.++++|++|||||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999998 54
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.34 E-value=0.0001 Score=51.56 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.31 E-value=0.00012 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.---++|+|++|||||||++.+.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33458899999999999999998653
No 249
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00014 Score=52.03 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=23.4
Q ss_pred cccccccceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
+.+.........|+|.|++||||||+.+.|..
T Consensus 11 ~~~~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 11 SSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -----CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445556677899999999999999999864
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.30 E-value=0.00012 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998653
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.27 E-value=0.00013 Score=53.09 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-.++|+|++|||||||++.+.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998643
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.00017 Score=51.21 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00015 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-|+|+|++|||||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999998653
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.22 E-value=0.00015 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999988753
No 255
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.20 E-value=0.0012 Score=52.94 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=47.5
Q ss_pred EEEEEEeCCCcccccc-chh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028353 62 LKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (210)
+.+.++||||...... ... .....+|.+++|+|+..... ... ....+.. ..+ ..-||.||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~-~a~~f~~---~l~-i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALS-VARAFDE---KVG-VTGLVLTKLDGDAR 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHH---HTC-CCEEEEESGGGCSS
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHH-HHHHHHh---cCC-ceEEEEeCcCCccc
Confidence 4688999999654321 111 11225788999999874322 212 1122221 111 24578899996422
Q ss_pred ceecHHHHHHHHHHhCCeEEEEcc
Q 028353 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa 159 (210)
. ..+..+....+.|+..+..
T Consensus 253 ~----g~alsi~~~~g~PI~flg~ 272 (425)
T 2ffh_A 253 G----GAALSARHVTGKPIYFAGV 272 (425)
T ss_dssp C----HHHHHHHHHHCCCEEEEEC
T ss_pred H----HHHHHHHHHHCCCEEEEeC
Confidence 1 2345566677888766653
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.19 E-value=0.00019 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998754
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.18 E-value=0.0002 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998654
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.18 E-value=0.00021 Score=49.64 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 028353 16 KLLMIGDSGVGKSSLLLSF 34 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l 34 (210)
-|+|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.16 E-value=0.00023 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999743
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.16 E-value=0.00022 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.14 E-value=0.00022 Score=52.11 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 262
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.14 E-value=0.00022 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998654
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.14 E-value=0.00023 Score=50.42 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.13 E-value=0.00026 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
....|+++|++|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998875
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.13 E-value=0.00031 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|++.|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.12 E-value=0.00027 Score=49.01 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 267
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.12 E-value=0.00029 Score=52.16 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
.-.|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.11 E-value=0.00027 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.10 E-value=0.00026 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
-.|+++|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.10 E-value=0.00028 Score=51.01 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
+|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999985
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.09 E-value=0.00031 Score=50.70 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
+|+|+|+|||||+|...+|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.08 E-value=0.0003 Score=50.92 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999985
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.08 E-value=0.0003 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.08 E-value=0.00029 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.08 E-value=0.00027 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999988753
No 276
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.08 E-value=0.00029 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.06 E-value=0.00034 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 278
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.05 E-value=0.00026 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988754
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.05 E-value=0.00039 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
-.|+++|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 280
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.04 E-value=0.00032 Score=52.41 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 281
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.04 E-value=0.00033 Score=52.62 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.04 E-value=0.00034 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-|++.|++||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.03 E-value=0.00038 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.03 E-value=0.00039 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.02 E-value=0.00035 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998653
No 286
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.02 E-value=0.00036 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.02 E-value=0.00038 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 288
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.00036 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 289
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.00037 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.00 E-value=0.00038 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998664
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.99 E-value=0.00038 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
=.++|+|++|+|||||++.|.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999998754
No 292
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.99 E-value=0.00039 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.99 E-value=0.00038 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|+|+|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 294
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.99 E-value=0.0004 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++++|++|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 295
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.99 E-value=0.00049 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 296
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.98 E-value=0.00037 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
=.++|+|++|||||||++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999998753
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.00044 Score=48.80 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.|+|.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 298
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.97 E-value=0.00056 Score=48.10 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
...|++.|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999986
No 299
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.97 E-value=0.00043 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999975
No 300
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.97 E-value=0.00055 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHh
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~ 35 (210)
......|+|.|++||||||+.+.|.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3455689999999999999999886
No 301
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.97 E-value=0.00045 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++++|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999875
No 302
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.96 E-value=0.00051 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~ 35 (210)
....+|+|+|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999999986
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.96 E-value=0.00042 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.95 E-value=0.00045 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-++|+|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45789999999999999999854
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.95 E-value=0.00048 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998654
No 306
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.95 E-value=0.00049 Score=48.40 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028353 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~ 35 (210)
..|+++|++||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999985
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.95 E-value=0.0006 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.....-|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456678999999999999999998754
No 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.94 E-value=0.00048 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|+++|++||||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.94 E-value=0.00044 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..--|+++|++||||||+++.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988643
No 310
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.93 E-value=0.00046 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.93 E-value=0.00064 Score=48.81 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
......|+|+|++||||||+++.|...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344578999999999999999999754
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.93 E-value=0.00028 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=14.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC
Q 028353 16 KLLMIGDSGVGKSSLLLSFT-SD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~-~~ 37 (210)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 313
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.93 E-value=0.00058 Score=52.24 Aligned_cols=24 Identities=46% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
.++++|++|||||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987654
No 314
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.92 E-value=0.00048 Score=49.77 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
+|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.92 E-value=0.00034 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 316
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0013 Score=47.87 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=46.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEE-eCCCc-cc----c-ccchhhcccC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIW-DTAGQ-ER----F-RTLTSSYYRG 85 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g~-~~----~-~~~~~~~~~~ 85 (210)
..+=|++-|+++.|||.|++++.+......... ......-.+....+-|| |.-.. .. | ..........
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~i~-----k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~v 102 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCSSTGISIV-----KDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNV 102 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCCCCSSCEE-----EEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHT
T ss_pred CceEEEecCcccccHHHHHHHHhcccccccccc-----cCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHh
Confidence 344455559999999999999997743221111 11222223344455554 44321 11 0 0111111223
Q ss_pred ccEEEEEEECCCcccHHHHHH
Q 028353 86 AQGIIMVYDVTRRDTFTNLSD 106 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~ 106 (210)
.+++|+|++.......+.+.+
T Consensus 103 iggII~~f~~p~~~~~~~i~~ 123 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQELLHQ 123 (233)
T ss_dssp EEEEEEEECHHHHCGGGTHHH
T ss_pred cceEEEEEeCCCcchHHHHHH
Confidence 588999998666555544433
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.92 E-value=0.00048 Score=51.74 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998653
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.92 E-value=0.00055 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.91 E-value=0.00055 Score=48.80 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 320
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.91 E-value=0.00058 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.91 E-value=0.00051 Score=50.65 Aligned_cols=21 Identities=29% Similarity=0.630 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028353 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~ 35 (210)
=-++++|++|||||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999887
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.89 E-value=0.00048 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
=-++|+|++|||||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999864
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.89 E-value=0.00056 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998853
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00065 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
...|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999885
No 325
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.00061 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999764
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.87 E-value=0.00053 Score=47.85 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.86 E-value=0.0003 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
....|++.|++||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 328
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.86 E-value=0.00032 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998854
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.86 E-value=0.00054 Score=51.66 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 330
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.85 E-value=0.00059 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
...|+|.|++||||||+++.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999885
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.85 E-value=0.00067 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..+|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988643
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.84 E-value=0.00057 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999865
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.00079 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|+|.|++||||||+++.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 334
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.00093 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.....|++.|.+||||||+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.82 E-value=0.00073 Score=49.96 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.....|+|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998875
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.81 E-value=0.00071 Score=49.18 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
-|+|+|+|||||+|....|.
T Consensus 31 iI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36678999999999999886
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.80 E-value=0.00053 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++|+|++|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999999864
No 338
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.79 E-value=0.00079 Score=50.01 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=21.4
Q ss_pred ccceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 10 EFDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 10 ~~~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
+....+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344568899999999999999998854
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.79 E-value=0.00073 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
....-|++.|++||||||+++.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999964
No 340
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.79 E-value=0.00072 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
No 341
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.79 E-value=0.0026 Score=51.16 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=40.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc------------------CCCC---CCC-CCceeeeEEEEEEE---CCeEEEEEE
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTS------------------DNFE---ELS-PTIGVDFKVKYVDV---GGKKLKLAI 66 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~------------------~~~~---~~~-~~~~~~~~~~~~~~---~~~~~~~~l 66 (210)
....=|.|+|+.++|||+|+|.|+. ..|. ... .|.|...+...+.+ ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3556677999999999999995541 1221 111 15555444333322 667789999
Q ss_pred EeCCCccc
Q 028353 67 WDTAGQER 74 (210)
Q Consensus 67 ~D~~g~~~ 74 (210)
+||.|...
T Consensus 145 lDTEG~~d 152 (457)
T 4ido_A 145 MDTQGTFD 152 (457)
T ss_dssp EEECCBTC
T ss_pred EeccCCCC
Confidence 99999543
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.78 E-value=0.00085 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 343
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.78 E-value=0.00069 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
-++++|++|||||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 368999999999999999987643
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.78 E-value=0.0007 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 345
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.77 E-value=0.0008 Score=49.04 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028353 16 KLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~ 35 (210)
.|+|.|++||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 346
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.77 E-value=0.00061 Score=49.51 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
...|+|.|++||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999885
No 347
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.77 E-value=0.00078 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998653
No 348
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.76 E-value=0.00078 Score=47.18 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
...|++.|++||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999999999986
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.74 E-value=0.00099 Score=51.35 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.1
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
....+-|+|.|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988854
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.73 E-value=0.00082 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998764
No 351
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.72 E-value=0.00048 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 352
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.001 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988643
No 353
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.71 E-value=0.00078 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998753
No 354
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.71 E-value=0.00088 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46899999999999999998754
No 355
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.71 E-value=0.00087 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998754
No 356
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.70 E-value=0.0011 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|+|.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 357
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.70 E-value=0.0011 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHh
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~ 35 (210)
......|+|.|++|||||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999998775
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.00095 Score=47.62 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...|+|.|++||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.70 E-value=0.0009 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998764
No 360
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.00091 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999998754
No 361
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.70 E-value=0.0011 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
....|+|.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999764
No 362
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.69 E-value=0.001 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
...|+|.|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.68 E-value=0.00095 Score=49.69 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999863
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.67 E-value=0.0011 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..+.|+|++|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999874
No 365
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.67 E-value=0.0011 Score=48.68 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...+|+|.|++||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998863
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.67 E-value=0.0011 Score=50.74 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998763
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.66 E-value=0.00093 Score=51.16 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=46.2
Q ss_pred EEEEEeCCCcccccc------------chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028353 63 KLAIWDTAGQERFRT------------LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (210)
.+.++|++|...... +.+......+.++++.|+......... ...+... .+. .++++||.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~---~~~~~~~----~~~-t~iivTh~ 257 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ---AKKFHEA----VGL-TGVIVTKL 257 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH---HHHHHHH----HCC-SEEEEECT
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH---HHHHHHH----cCC-cEEEEECC
Confidence 356789998532211 112234457788889998765433222 1111111 122 37889999
Q ss_pred CCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028353 131 DKESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (210)
|.... .-.+..+....+.|+.++.
T Consensus 258 d~~a~----gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 258 DGTAK----GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp TSSCC----CTTHHHHHHHHCCCEEEEE
T ss_pred ccccc----ccHHHHHHHHHCCCeEEEe
Confidence 86422 1234456667788876665
No 368
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.65 E-value=0.001 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998653
No 369
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.65 E-value=0.00099 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998764
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.0011 Score=45.99 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 371
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.00073 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.1
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
......|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999864
No 372
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0012 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
....-|+++|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.64 E-value=0.0011 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.63 E-value=0.00045 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999863
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.63 E-value=0.0012 Score=46.68 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 376
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.63 E-value=0.00098 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999864
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.63 E-value=0.001 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
..--++++|++||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999998864
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.62 E-value=0.0011 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.62 E-value=0.001 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++|+|++|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.62 E-value=0.0011 Score=46.50 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 381
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.0007 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=16.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 382
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.61 E-value=0.00082 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998654
No 383
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.61 E-value=0.0013 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|++.|.+||||||+++.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.61 E-value=0.0011 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.60 E-value=0.0012 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...|+|.|.+||||||+++.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.60 E-value=0.0014 Score=45.34 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028353 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~ 35 (210)
-.|++.|.+||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999885
No 387
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.60 E-value=0.0013 Score=48.92 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028353 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~ 35 (210)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 388
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.58 E-value=0.0011 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-.++|+|++|||||||++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999865
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.58 E-value=0.0012 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
-.++|+|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.57 E-value=0.0015 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 391
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.52 E-value=0.0013 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999864
No 392
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.52 E-value=0.0013 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-++++|++|+|||||++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999998743
No 393
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.52 E-value=0.0014 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 394
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.50 E-value=0.0013 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-++|+|++|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 395
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.50 E-value=0.0018 Score=47.42 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
....-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999999865
No 396
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.49 E-value=0.0013 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346799999999999999888643
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.48 E-value=0.00081 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998764
No 398
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.48 E-value=0.0015 Score=45.77 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999864
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.48 E-value=0.0014 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-.++|+|++||||||+++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998643
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.48 E-value=0.0016 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998865
No 401
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.48 E-value=0.0016 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~ 35 (210)
..+.|+|.|++||||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.45 E-value=0.0018 Score=47.13 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 403
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.44 E-value=0.0018 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.43 E-value=0.0019 Score=48.88 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~ 35 (210)
...+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999986
No 405
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.42 E-value=0.0029 Score=42.73 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
....|++.|++|+|||++++.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34569999999999999999997653
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0017 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
..--++++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999998864
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0015 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
=.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998754
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.35 E-value=0.0018 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0019 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.34 E-value=0.0021 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
....|++.|++||||||+++.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998864
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.33 E-value=0.0021 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
=+++++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999774
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.33 E-value=0.0019 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
..--++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345689999999999999998863
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.32 E-value=0.0021 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.32 E-value=0.0022 Score=46.96 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467899999999999999998743
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.30 E-value=0.0022 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999864
No 416
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.30 E-value=0.0014 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++|+|+.|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46788999999999999999653
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.30 E-value=0.0018 Score=46.48 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.+++.||||+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888764
No 418
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.29 E-value=0.0022 Score=48.74 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.28 E-value=0.0029 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.-..|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 420
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.27 E-value=0.0017 Score=48.46 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.3
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
......|+|.|..||||||+++.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998874
No 421
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.26 E-value=0.0022 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 422
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.24 E-value=0.0023 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999754
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.22 E-value=0.003 Score=42.97 Aligned_cols=19 Identities=53% Similarity=0.711 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028353 17 LLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~ 35 (210)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999998875
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.22 E-value=0.0026 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
..-.|++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 425
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.22 E-value=0.0027 Score=48.25 Aligned_cols=26 Identities=23% Similarity=0.112 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..+.-+++.|+||+|||+|++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456788899999999999998743
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.21 E-value=0.0024 Score=50.31 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
..-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 334789999999999999999985
No 427
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0028 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998864
No 428
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.18 E-value=0.0025 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.|++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999854
No 429
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.18 E-value=0.0029 Score=45.92 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 430
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.17 E-value=0.014 Score=45.76 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
.+ .+|+|+.|+|||||++.++
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 35 4589999999999999876
No 431
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.17 E-value=0.0033 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~ 35 (210)
-.++.|+|+|||||||+...|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHH
Confidence 4689999999999999999885
No 432
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.08 E-value=0.0031 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
=-++|+|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999998864
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0049 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 434
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.07 E-value=0.0031 Score=48.54 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.+++.|++|+|||+|++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998753
No 435
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.07 E-value=0.0021 Score=43.26 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...|++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999999988754
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.06 E-value=0.0039 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=19.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~ 35 (210)
....++|.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998664
No 437
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.06 E-value=0.0047 Score=46.21 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45568999999999999999998754
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.05 E-value=0.0034 Score=50.51 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
=+++++|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999998764
No 439
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.04 E-value=0.0035 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998653
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.03 E-value=0.0045 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...-|+++|++||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999875
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.02 E-value=0.0047 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.99 E-value=0.0036 Score=47.15 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 443
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0037 Score=50.07 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..--|++.||||+|||+|++.+.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999999854
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.96 E-value=0.004 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998654
No 445
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0038 Score=50.07 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..+-.|++.||||+|||+|++.+.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34567999999999999999999854
No 446
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.96 E-value=0.004 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 447
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0054 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998754
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0045 Score=45.34 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=21.5
Q ss_pred cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 11 FDYLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 11 ~~~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
......|+|+|++||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998864
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.93 E-value=0.0048 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 450
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.91 E-value=0.0042 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.|++.|+||+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999854
No 451
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0042 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..+--|++.||||+|||+|++.+.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999854
No 452
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.0035 Score=48.72 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 028353 17 LLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~ 36 (210)
++|.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 453
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.87 E-value=0.0043 Score=47.27 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCccccccc----hhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028353 61 KLKLAIWDTAGQERFRTL----TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (210)
.+.+.++||+|....... ....+. ..+.+++|+|++.. ...+.. +...+. ..+. .-+|.||.|...
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~~~~~~----~l~~-~giVltk~D~~~ 253 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-IVKRFS----SVPV-NQYIFTKIDETT 253 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-HTTTTS----SSCC-CEEEEECTTTCS
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-HHHHHh----cCCC-CEEEEeCCCccc
Confidence 356889999996543321 112232 36788999987743 233332 222111 1122 346679999753
Q ss_pred CceecHHHHHHHHHHhCCeEEEEc
Q 028353 135 ERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~S 158 (210)
. ...+.......+.|+..++
T Consensus 254 ~----~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 S----LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp C----CHHHHHHHHTCSCCCSEEC
T ss_pred c----hhHHHHHHHHHCcCEEEEE
Confidence 2 1245666777888865554
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.0045 Score=51.18 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~~ 39 (210)
.++|+|+.|||||||++.+.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999997543
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.0042 Score=48.53 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998753
No 456
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.0043 Score=48.06 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++|.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 457
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.85 E-value=0.0054 Score=43.09 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
++|+|.++||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.85 E-value=0.006 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-.++|.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988753
No 459
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.84 E-value=0.005 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.84 E-value=0.0052 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999764
No 461
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.83 E-value=0.0051 Score=47.32 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...|++.|+||+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999753
No 462
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0046 Score=49.01 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..+--|++.||||+|||+|++.+.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34457999999999999999999754
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.80 E-value=0.0072 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998754
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.80 E-value=0.0035 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 67899999999999999888653
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.78 E-value=0.0056 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.76 E-value=0.0055 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 467
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.76 E-value=0.0054 Score=46.95 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccccccch-------hhc-----ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028353 62 LKLAIWDTAGQERFRTLT-------SSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (210)
+.+.++|+||........ ... -...+.+++|+|+... .+.+.. .. .+.. ..++ .-+|.||
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~-~~~~---~~~i-~gvVlTk 258 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AK-IFKE---AVNV-TGIILTK 258 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HH-HHHH---HSCC-CEEEEEC
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HH-HHHh---cCCC-CEEEEeC
Confidence 357889999953322111 111 1247889999998733 222222 21 1221 1222 3567899
Q ss_pred CCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028353 130 VDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (210)
.|.... .-.+..+....+.|+.++..-
T Consensus 259 ~D~~~~----gG~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 259 LDGTAK----GGITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp GGGCSC----TTHHHHHHHHHCCCEEEEECS
T ss_pred CCCccc----hHHHHHHHHHHCCCEEEEeCC
Confidence 996322 223677778889997777553
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.76 E-value=0.0056 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 469
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.75 E-value=0.0049 Score=43.99 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 470
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.74 E-value=0.0036 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999998653
No 471
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.71 E-value=0.0041 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998653
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.70 E-value=0.0059 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988863
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.70 E-value=0.0073 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=19.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~ 35 (210)
...+|+++|++|+||||+.+.|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999998764
No 474
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.69 E-value=0.0055 Score=47.82 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999865
No 475
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0051 Score=47.32 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...-.++|.|+||+|||++++.+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999998743
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.0058 Score=47.30 Aligned_cols=21 Identities=38% Similarity=0.762 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~ 37 (210)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988643
No 477
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.66 E-value=0.0063 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
-.++|.|+||+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.66 E-value=0.0024 Score=47.61 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999874
No 479
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.65 E-value=0.0067 Score=46.44 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988864
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0063 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 028353 17 LLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~~~~~ 39 (210)
++++|+.|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999987643
No 481
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.64 E-value=0.0048 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~~ 38 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999988643
No 482
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.63 E-value=0.0062 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
.-.|++.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998754
No 483
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.57 E-value=0.0072 Score=44.97 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~~ 38 (210)
...|+|.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3579999999999999999998553
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.56 E-value=0.006 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
-+++++|+||+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 485
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.56 E-value=0.007 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...|++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999644
No 486
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0068 Score=48.41 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...--|++.||||+|||+|++.+.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 34567999999999999999999854
No 487
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.55 E-value=0.0072 Score=47.29 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
....|++.|+||+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998743
No 488
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.54 E-value=0.0065 Score=50.32 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-.++++|++|+|||||++.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999988643
No 489
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.53 E-value=0.0077 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-|+|+||+|||||||...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999743
No 490
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.53 E-value=0.0073 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998743
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.52 E-value=0.0085 Score=42.93 Aligned_cols=19 Identities=53% Similarity=0.711 Sum_probs=16.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028353 17 LLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 17 i~i~G~~~~GKstli~~l~ 35 (210)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4677999999999998874
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.52 E-value=0.0068 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028353 14 LFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 14 ~~ki~i~G~~~~GKstli~~l~~ 36 (210)
.-.++|.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998874
No 493
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.52 E-value=0.0068 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028353 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~~ 37 (210)
-|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 494
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.51 E-value=0.0062 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~ 36 (210)
..-.++|.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.51 E-value=0.0072 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~~ 37 (210)
-.|+++|+||+|||+|++.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999863
No 496
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.48 E-value=0.0079 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
-|+|+|++|||||||...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.48 E-value=0.0077 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028353 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~ki~i~G~~~~GKstli~~l~~~ 37 (210)
....|+|.|++|+|||+|++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
No 498
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.46 E-value=0.006 Score=47.01 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028353 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ki~i~G~~~~GKstli~~l~~ 36 (210)
.+++.|+||+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 699999999999999999864
No 499
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.41 E-value=0.0079 Score=43.32 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028353 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~ki~i~G~~~~GKstli~~l~~ 36 (210)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999988854
No 500
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.40 E-value=0.011 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHH
Q 028353 12 DYLFKLLMIGDSGVGKSSLLLSF 34 (210)
Q Consensus 12 ~~~~ki~i~G~~~~GKstli~~l 34 (210)
.+.+|++++|...|||||+++.+
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 46799999999999999999765
Done!