BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028354
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic
OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1
Length = 242
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 141/210 (67%), Gaps = 21/210 (10%)
Query: 1 MALSSSSSSLCLHSATVLS-GSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYY 59
MAL S CL + ++S + F+ L F+ PTKL + + +R
Sbjct: 1 MALPS-----CLKTGALMSPATGFNFSGSLMKSDSGFAV-PTKLQSTRKGDRE------- 47
Query: 60 HSSASQKWRASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIA 116
+ +A SF PAFL + A K LK+ELLEAI PL+RGA A+P+DQ R++Q+A
Sbjct: 48 ----RLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103
Query: 117 RKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNM 176
RK+E VNPTKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QNM
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNM 163
Query: 177 ESGPFFNQVTADLTPLNSRKVAVQFDYFKI 206
E+ PF+N VT D+ PLNS+KVAV+ FKI
Sbjct: 164 ETWPFYNSVTGDIKPLNSKKVAVKLQVFKI 193
>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic
OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1
Length = 234
Score = 181 bits (458), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 107/137 (78%)
Query: 70 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPL 129
+V FP + K LK EL+EAI PL+RGA A+P+DQ ++Q+ARK+E VNPTKEPL
Sbjct: 48 AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPL 107
Query: 130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADL 189
KSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q ME+ PF+N VT DL
Sbjct: 108 KSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSVTGDL 167
Query: 190 TPLNSRKVAVQFDYFKI 206
TPLNS+ VAV+ FKI
Sbjct: 168 TPLNSKTVAVKLQVFKI 184
>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic
OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1
Length = 273
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQ-RVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
+KEEL EA+ ++RG D++ +E + + LE NPT EP D + G W+LIY+T
Sbjct: 86 IKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYST 145
Query: 145 SQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLN 193
++L ++R + +R++ ++ D L+ ++ G + + D+ LN
Sbjct: 146 I-TVLGSKRTKL--GLRDFVSLG-DLLQQIDIAQGKTVHVLKFDVRGLN 190
>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP2 PE=2 SV=1
Length = 319
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
LK +L EA+ +RG A+ E + V ++ +LE NPT P ++ LLNGKW L YT+
Sbjct: 95 LKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSF 154
Query: 146 QSIL----QTQRPRFLRSVRNYQAINVDTLRAQNME--SGPFFN---QVTADLTPLNSRK 196
+ P+ ++ Q I+ + QN SGP A + ++
Sbjct: 155 SQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKR 214
Query: 197 VAVQFDYFKIG 207
V ++FD IG
Sbjct: 215 VQIKFDEGIIG 225
>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica
campestris GN=PAP2 PE=1 SV=1
Length = 319
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSD-LLNGKWEL 140
++ +VLK L++++ DRG A+ E + + + +LE NPT P + LLNGKW L
Sbjct: 90 EETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWIL 149
Query: 141 IYTT 144
YT+
Sbjct: 150 AYTS 153
>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu
GN=PAP PE=2 SV=1
Length = 323
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
LK+ L+++ DRG AT E + + ++ +LE NPT P ++ LLN KW L+YT+
Sbjct: 99 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTS 157
>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic
OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1
Length = 409
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 90 ELLEAIAPL-DRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTT 144
+L++A+ + RG A+P+ VE + LEG+ + P SDL+ G+W L++TT
Sbjct: 77 KLIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTT 132
>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1
Length = 358
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
LK L++ + + G A E + V + +LE NPT P++ DLLNG W L+YT S
Sbjct: 135 LKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEPDLLNGNWVLLYTAS 194
Query: 146 QSIL 149
+L
Sbjct: 195 SELL 198
>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast
OS=Cucumis sativus GN=CHRC PE=1 SV=1
Length = 322
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
LK+ L+++ DRG + + + + ++ +LE NPT P ++ LLNGKW L YTT
Sbjct: 99 LKKALVDSFYGTDRGLRVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTF 158
Query: 146 QSI--LQTQRPRFLRSVRNYQAINVDTLRAQNME--SGPF 181
+ L ++ ++ Q I+ + L QN SGP
Sbjct: 159 AGLFPLLSRNLPLVKVEEISQTIDSENLTVQNSVQFSGPL 198
>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic
OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1
Length = 318
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 69 ASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEP 128
++VS + ++ + LK L +++ DRG + + + + ++ +LE NPT P
Sbjct: 76 STVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAP 135
Query: 129 LKSD-LLNGKWELIYTTSQSI--LQTQRPRFLRSVRNY-QAINVDTLRAQNME--SGPFF 182
++ LLNGKW L YT+ + L ++R L V Q I+ D+ QN +GPF
Sbjct: 136 NEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFS 195
Query: 183 N---QVTADLTPLNSRKVAVQFDYFKIG 207
A + ++V ++F+ IG
Sbjct: 196 TTSFSTNAKFEIRSPKRVQIKFEQGVIG 223
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic
OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1
Length = 310
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSD-LLNGKWELIYTT 144
LK L++++ DRG A+ E + + + +LE NPT P ++ LLNGKW L YT+
Sbjct: 86 LKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTS 144
>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic
OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1
Length = 239
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 91 LLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTT 144
LL +A D G +PE + V Q+A +L+ KEP+K+ L+ G WE++Y +
Sbjct: 72 LLSKVANSDGGVTLSPEQHKEVAQVAGELQKYC-VKEPVKNPLIFGDWEVVYCS 124
>sp|Q7XBW5|PAP3_ORYSJ Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP3 PE=3 SV=1
Length = 374
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLK-SDLLNGKWELIYTTS 145
LK L++ + D G A+ E + V ++ +LE NPT EP++ + LL G W LIYT
Sbjct: 149 LKRCLVDTVYGSDLGFRASSEVRGEVLELVTQLEATNPTPEPVQATHLLAGNWILIYTAY 208
Query: 146 QSIL 149
+L
Sbjct: 209 SELL 212
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
Length = 326
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 86 VLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
+LK++L +++ +RG A+ E + + ++ +LE NP P ++ LLNGKW L YT+
Sbjct: 101 LLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTS 160
Query: 145 SQS---ILQTQRPRFLRSVRNYQAINVDTLRAQN--MESGPFFN---QVTADLTPLNSRK 196
+L +R Q I+ ++ QN + +GP A + ++
Sbjct: 161 FSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKR 220
Query: 197 VAVQFDYFKIG 207
V ++F+ IG
Sbjct: 221 VQIKFEEGIIG 231
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1
Length = 326
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 86 VLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
+LK++L +++ +RG A+ E + + ++ +LE NP P ++ LLNGKW L YT+
Sbjct: 101 LLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTS 160
Query: 145 SQS---ILQTQRPRFLRSVRNYQAINVDTLRAQN--MESGPFFN---QVTADLTPLNSRK 196
+L +R Q I+ ++ QN + +GP A + ++
Sbjct: 161 FSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKR 220
Query: 197 VAVQFDYFKIG 207
V ++F+ IG
Sbjct: 221 VQIKFEEGIIG 231
>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica
campestris GN=PAP1 PE=1 SV=1
Length = 327
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSD-LLNGKWELIYTT 144
LK L ++ DRG A+ E + + ++ +LE NP P ++ LLNGKW L+YT+
Sbjct: 103 LKRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVYTS 161
>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic
OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1
Length = 376
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYT 143
LK L +++ + G +A E + V ++ +LE +NPT PL++ +LL+G W L+YT
Sbjct: 153 LKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYT 210
>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica
campestris GN=PAP3 PE=2 SV=1
Length = 360
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
LK L + + + G A E + V +I +LE +NPT+ P+++ +LL+G W L+YT
Sbjct: 137 LKRCLADTVYGTELGFRAGSEVRAEVLEIVNQLEALNPTQAPVENPELLDGNWVLLYTAF 196
Query: 146 QSIL 149
+L
Sbjct: 197 SELL 200
>sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic
OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1
Length = 284
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 88 KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE--PLKSDLLNGKWELIYTTS 145
K +LL A+ RG AT + + +E+ +EG N +E P+K L+G W L YT++
Sbjct: 64 KHDLLRAVQDTQRGLTATSDQRSIIEEALVTVEGFNGGEEIDPVK---LDGTWRLQYTSA 120
Query: 146 QSIL 149
++
Sbjct: 121 PDVV 124
>sp|Q03GG4|SYL_PEDPA Leucine--tRNA ligase OS=Pediococcus pentosaceus (strain ATCC 25745
/ 183-1w) GN=leuS PE=3 SV=1
Length = 805
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 66 KWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDR---GAEATPEDQQRVEQIARKLE-- 120
+W S +F +++ D K+ E+LL+ P+D GAE + L
Sbjct: 493 QWAGSSWYFLRYVDPKNDQKIADEDLLKEWLPVDLYVGGAEHAVLHLLYARFWHKVLYDL 552
Query: 121 GVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180
GV PTKEP + + G +I ++ + + + + DTLR M GP
Sbjct: 553 GVVPTKEPFQKLVNQG---MILGSNHEKMSKSKGNVVNPDDIVERFGADTLRLYEMFMGP 609
Query: 181 FFNQVTADLTPLN-SRK 196
V LN SRK
Sbjct: 610 LTESVAWSEDGLNGSRK 626
>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic
OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 98 LDRGAEATPEDQQRVEQIARKLEGVN-PTKEPLKSDLLNGKWELIYTTS 145
L+RG A+ +D +R E A++LE P D L GKW L+Y+++
Sbjct: 98 LNRGLVASVDDLERAEVAAKELETAGGPVDLTDDLDKLQGKWRLLYSSA 146
>sp|P23445|FLII_BACSU Flagellum-specific ATP synthase OS=Bacillus subtilis (strain 168)
GN=fliI PE=3 SV=2
Length = 438
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 42 KLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFP---AFLNKGKDAKVLKEELLEAIAPL 98
+L + YQN+ +L + Y +S++ ++ F+P FL +G D L EE + A+ L
Sbjct: 374 ELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDEPALLEESIAALTSL 433
>sp|Q9XW87|LONP2_CAEEL Lon protease homolog 2, peroxisomal OS=Caenorhabditis elegans
GN=Y75B8A.4 PE=3 SV=1
Length = 773
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 69 ASVSFFPAFLNKGKDAKVLKEEL---LEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPT 125
A V ++N+ KDA LK ++ LEA P+D P + +VEQ+ KL + +
Sbjct: 185 ARVEMCIKWMNEKKDANTLKLKVPNSLEASFPVDGKKRKIPNVKNQVEQLEEKLNAIEFS 244
Query: 126 KE 127
E
Sbjct: 245 DE 246
>sp|Q86AY4|Y2340_DICDI TNF receptor-associated factor family protein DDB_G0272340
OS=Dictyostelium discoideum GN=DDB_G0272340 PE=3 SV=2
Length = 449
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 31 PPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVS 72
P +V FS+ LN ++ NR L+S+ +H+ WR+ ++
Sbjct: 376 PSKVQFSF--ELLNKDFTRNRKLASTNIFHTENKWGWRSFIN 415
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,301,260
Number of Sequences: 539616
Number of extensions: 2846034
Number of successful extensions: 8632
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 8600
Number of HSP's gapped (non-prelim): 49
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)