Query 028354
Match_columns 210
No_of_seqs 142 out of 336
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 10:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 3.9E-29 8.5E-34 208.2 15.2 123 85-207 1-133 (198)
2 TIGR02116 toxin_Txe_YoeB toxin 74.6 9 0.0002 27.7 5.1 33 106-139 17-49 (80)
3 PF05973 Gp49: Phage derived p 54.5 44 0.00095 24.3 5.5 42 105-146 7-50 (91)
4 PF06251 Caps_synth_GfcC: Caps 50.9 14 0.0003 31.9 2.7 65 82-148 53-130 (229)
5 KOG0426 Ubiquitin-protein liga 40.4 1.5E+02 0.0031 24.8 6.9 89 22-121 59-160 (165)
6 PF14834 GST_C_4: Glutathione 39.5 40 0.00087 27.2 3.5 40 97-140 33-72 (117)
7 PF12283 Protein_K: Bacterioph 39.0 84 0.0018 22.0 4.5 36 84-122 5-41 (56)
8 cd03715 RT_ZFREV_like RT_ZFREV 39.0 65 0.0014 26.9 4.9 43 100-142 5-56 (210)
9 cd01645 RT_Rtv RT_Rtv: Reverse 37.6 73 0.0016 26.9 5.0 43 100-142 5-55 (213)
10 TIGR00053 addiction module tox 34.2 39 0.00085 24.5 2.5 33 107-139 23-55 (89)
11 PF14869 DUF4488: Domain of un 33.0 2.4E+02 0.0051 23.3 7.0 41 133-179 2-44 (133)
12 PF12644 DUF3782: Protein of u 32.2 59 0.0013 22.3 3.0 36 82-123 8-43 (64)
13 PHA00097 K protein K 30.4 1.4E+02 0.003 20.9 4.5 36 84-122 5-41 (56)
14 KOG1513 Nuclear helicase MOP-3 30.0 42 0.0009 35.7 2.7 35 82-121 774-808 (1300)
15 PF07240 Turandot: Stress-indu 25.9 1.5E+02 0.0032 22.6 4.4 37 88-124 12-48 (85)
16 PF05015 Plasmid_killer: Plasm 23.9 3.1E+02 0.0067 20.4 6.2 31 92-122 10-40 (93)
17 COG3880 Modulator of heat shoc 23.3 1.2E+02 0.0025 26.2 3.8 40 82-127 136-175 (176)
18 TIGR02683 upstrm_HI1419 probab 21.9 2.1E+02 0.0047 21.1 4.7 35 105-142 18-52 (95)
19 PF07278 DUF1441: Protein of u 21.8 1.2E+02 0.0026 25.4 3.5 37 84-120 103-139 (152)
20 KOG0421 Ubiquitin-protein liga 21.8 1.3E+02 0.0028 25.5 3.7 32 77-108 24-55 (175)
21 PF07624 PSD2: Protein of unkn 20.8 1.5E+02 0.0033 21.3 3.5 23 101-123 37-59 (76)
22 PF14357 DUF4404: Domain of un 20.1 1.4E+02 0.0031 22.3 3.3 23 100-122 15-37 (85)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.96 E-value=3.9e-29 Score=208.19 Aligned_cols=123 Identities=39% Similarity=0.627 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCceEEEEEecccccccc---cCCceeeee
Q 028354 85 KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTSQSILQT---QRPRFLRSV 160 (210)
Q Consensus 85 ~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt~~P~~s-~lL~G~W~LlYTTs~~~lg~---~~~p~l~vG 160 (210)
+++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+..+... ...+++++|
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~ 80 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG 80 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence 46999999999999999999999999999999999999999999998 99999999999999998853 556778899
Q ss_pred ceEEEEeCCCCeEEEeee---CCCcc---eEEeEEEEeCCCeEEEEEeeeEEe
Q 028354 161 RNYQAINVDTLRAQNMES---GPFFN---QVTADLTPLNSRKVAVQFDYFKIG 207 (210)
Q Consensus 161 ~i~Q~ID~~~~rv~NvV~---~p~~~---~V~A~fe~~s~kRV~V~Fe~~~I~ 207 (210)
+|||+||.+++++.|+|. ||+.. .+.|++++.+++|+.|+|+++.++
T Consensus 81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~ 133 (198)
T PF04755_consen 81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLK 133 (198)
T ss_pred ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEc
Confidence 999999999999999999 45433 789999999999999999999875
No 2
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=74.61 E-value=9 Score=27.67 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEE
Q 028354 106 PEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWE 139 (210)
Q Consensus 106 ~~qr~~IeelI~eLEalNPt~~P~~s~lL~G~W~ 139 (210)
++.+++|.++|++|+ .||.+.......|.|.|.
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~~~ 49 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKPEPLKGDLS 49 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCcccCCCCCC
Confidence 567889999999887 566642233344555443
No 3
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=54.49 E-value=44 Score=24.35 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CceEEEEEeccc
Q 028354 105 TPEDQQRVEQIARKLEGVNPTKEPLKSDLL--NGKWELIYTTSQ 146 (210)
Q Consensus 105 s~~qr~~IeelI~eLEalNPt~~P~~s~lL--~G~W~LlYTTs~ 146 (210)
++..+++|...++.|+..+|...+-....| +|-|||......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 567889999999999888855443333344 699999997664
No 4
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=50.93 E-value=14 Score=31.94 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC-------------CCCCCCCCceEEEEEeccccc
Q 028354 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE-------------PLKSDLLNGKWELIYTTSQSI 148 (210)
Q Consensus 82 ~~~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt~~-------------P~~s~lL~G~W~LlYTTs~~~ 148 (210)
...++.|++|+..++.... ....+..+.+..++++|+....+.+ +...++|+|..+|.....+..
T Consensus 53 ~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L~ggd~L~vP~rp~~ 130 (229)
T PF06251_consen 53 AEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNPLLEGGDRLYVPPRPNT 130 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS-B-ECEEEEE-----SE
T ss_pred HHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCCcCCCCcEEEECCCCCE
Confidence 4678888898877776544 4456778889999999988765443 223588999999999888774
No 5
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=1.5e+02 Score=24.84 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=57.9
Q ss_pred cccCCCCCCCC--ceeeeeeeecCCCCccceeecCCccccCC----ccccccccceecccccccCcccHHHHHHHHHHHh
Q 028354 22 QFSTPQLLFPP--RVSFSYFPTKLNNNYQNNRNLSSSEYYHS----SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAI 95 (210)
Q Consensus 22 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wr~~~s~~pa~~~~~~~~~~lK~~LL~ai 95 (210)
.|-+.-||-|+ +.+-.+|--+.--+.++||.+.-+...+| ..+.+|.-. +.++..--.++..+
T Consensus 59 ~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPV-----------QSvEKILLSV~SML 127 (165)
T KOG0426|consen 59 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPV-----------QSVEKILLSVVSML 127 (165)
T ss_pred ecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChH-----------HHHHHHHHHHHHHH
Confidence 47777788777 45557788888888999998776554444 234445221 23344444445566
Q ss_pred ccCC--CCCCCCH-----HHHHHHHHHHHHHHh
Q 028354 96 APLD--RGAEATP-----EDQQRVEQIARKLEG 121 (210)
Q Consensus 96 agt~--RG~~as~-----~qr~~IeelI~eLEa 121 (210)
+.-+ .|..++. ++|.+.+++++.|-.
T Consensus 128 aEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 128 AEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666 4666654 889999999888754
No 6
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=39.52 E-value=40 Score=27.18 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=23.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEEE
Q 028354 97 PLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWEL 140 (210)
Q Consensus 97 gt~RG~~as~~qr~~IeelI~eLEalNPt~~P~~s~lL~G~W~L 140 (210)
...+....+++.+++|++|+...|.+-+.. .+-|.|+|-.
T Consensus 33 ~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g----~~~LFGewsI 72 (117)
T PF14834_consen 33 RGARKPPLSEAAQAAAQKLIAVAERLLADG----GPNLFGEWSI 72 (117)
T ss_dssp S--------HHHHHHHHHHHHHHHHHTTT------SSTTSS--H
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhccC----CCCccccchH
Confidence 444567789999999999999999987543 3449999953
No 7
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=39.03 E-value=84 Score=22.01 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHHHHHHhc
Q 028354 84 AKVLKEELLEAIAPLDR-GAEATPEDQQRVEQIARKLEGV 122 (210)
Q Consensus 84 ~~~lK~~LL~aiagt~R-G~~as~~qr~~IeelI~eLEal 122 (210)
..-+|++||-+..+.+| |+-+-. ++|.....+||.+
T Consensus 5 ~tli~qellll~yelnrsgllven---e~i~~~l~~le~l 41 (56)
T PF12283_consen 5 TTLIKQELLLLTYELNRSGLLVEN---EEIQSQLKQLEKL 41 (56)
T ss_pred HHHHHHHHHHHHHHhccccccccc---HHHHHHHHHHHHH
Confidence 45689999999999998 776643 4566677777764
No 8
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=38.98 E-value=65 Score=26.90 Aligned_cols=43 Identities=12% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCC-----CCCCc-eEEEEE
Q 028354 100 RGAEATPEDQQRVEQIARKLEGVN---PTKEPLKS-----DLLNG-KWELIY 142 (210)
Q Consensus 100 RG~~as~~qr~~IeelI~eLEalN---Pt~~P~~s-----~lL~G-~W~LlY 142 (210)
+....++++++++.+.|++|+..+ |...|-.+ +.=+| +||++.
T Consensus 5 ~~~~~~~~~~~~~~~~v~~ll~~G~I~~~~s~~~sp~~~V~Kk~g~~~R~~v 56 (210)
T cd03715 5 KQYPLPREAREGITPHIQELLEAGILVPCQSPWNTPILPVKKPGGNDYRMVQ 56 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeECCCCCCCCceEEEEeCCCCcceEEE
Confidence 455678999999999999999876 44333333 33478 999975
No 9
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=37.57 E-value=73 Score=26.86 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCC-----CCCCceEEEEE
Q 028354 100 RGAEATPEDQQRVEQIARKLEGVN---PTKEPLKS-----DLLNGKWELIY 142 (210)
Q Consensus 100 RG~~as~~qr~~IeelI~eLEalN---Pt~~P~~s-----~lL~G~W~LlY 142 (210)
|....++++++.|.+.|++|-..+ |...|-.+ +.=+|+||++.
T Consensus 5 ~~~p~~~~~~~~~~~~i~~ll~~g~I~~~~s~~~sp~~~v~K~~g~~R~~~ 55 (213)
T cd01645 5 KQWPLTEEKLEALTELVTEQLKEGHIEPSTSPWNTPVFVIKKKSGKWRLLH 55 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCceecCCCCCcCcEEEEEcCCCCeEEEe
Confidence 556788999999999999998875 33334333 34479999985
No 10
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=34.20 E-value=39 Score=24.50 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEE
Q 028354 107 EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWE 139 (210)
Q Consensus 107 ~qr~~IeelI~eLEalNPt~~P~~s~lL~G~W~ 139 (210)
.++++|.+++++|...+|.|.......|.|.|.
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~~ 55 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPWK 55 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCcC
Confidence 456788888988887555544333335555543
No 11
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=32.96 E-value=2.4e+02 Score=23.30 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCceEEEE-Eecc-cccccccCCceeeeeceEEEEeCCCCeEEEeeeC
Q 028354 133 LLNGKWELI-YTTS-QSILQTQRPRFLRSVRNYQAINVDTLRAQNMESG 179 (210)
Q Consensus 133 lL~G~W~Ll-YTTs-~~~lg~~~~p~l~vG~i~Q~ID~~~~rv~NvV~~ 179 (210)
-|.|.|+|. |-+. +++-+ -++.+.++-+|.. +|+..|+.-.
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g-----~l~~~~~lKilS~-Dgtf~Ni~~~ 44 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPG-----KLKPSNVLKILSD-DGTFVNITMI 44 (133)
T ss_pred CceEEEEEEEEeecCcccCc-----eEeecccEEEEcC-CCcEEEEEEe
Confidence 378999999 4333 33211 1334455555544 4678887553
No 12
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=32.23 E-value=59 Score=22.29 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 028354 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVN 123 (210)
Q Consensus 82 ~~~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalN 123 (210)
++..++|++|-+..+. +++++.+.|++.++.|.+.+
T Consensus 8 ~~i~a~~e~l~~~~~~------lt~e~~~~l~~~~~al~~~~ 43 (64)
T PF12644_consen 8 DEIMATKEELEELEER------LTKEDKKRLEEYIDALGARW 43 (64)
T ss_pred HHHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHHh
Confidence 4667778877777655 78999999999999998754
No 13
>PHA00097 K protein K
Probab=30.41 E-value=1.4e+02 Score=20.92 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHHHHHHhc
Q 028354 84 AKVLKEELLEAIAPLDR-GAEATPEDQQRVEQIARKLEGV 122 (210)
Q Consensus 84 ~~~lK~~LL~aiagt~R-G~~as~~qr~~IeelI~eLEal 122 (210)
..-++++||-+..+.+| |+-+-. ++|.....+||.+
T Consensus 5 ttli~qelllltyelnrsgllven---eeiqs~lk~le~l 41 (56)
T PHA00097 5 TTLILQELLLLTYELNRSGLLVEN---EEIQSQLKKLEKL 41 (56)
T ss_pred hHHHHHHHHHHHHhhccccceecc---HHHHHHHHHHHHH
Confidence 34589999999999998 776644 4566666677764
No 14
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=30.04 E-value=42 Score=35.70 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHh
Q 028354 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121 (210)
Q Consensus 82 ~~~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEa 121 (210)
+.++++|++||+.|..++|-+++ .-+++||++|-.
T Consensus 774 er~~~mkeeLL~kverLg~~LP~-----NTLDqLIdelGG 808 (1300)
T KOG1513|consen 774 ERVERMKEELLDKVERLGRELPP-----NTLDQLIDELGG 808 (1300)
T ss_pred HHHHHHHHHHHHHHHHhcccCCc-----chHHHHHHHhCC
Confidence 44678999999999999988876 567888888843
No 15
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=25.86 E-value=1.5e+02 Score=22.60 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=30.4
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 028354 88 KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNP 124 (210)
Q Consensus 88 K~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNP 124 (210)
-++|++.-.....-+..++++|+++++.|.+-+..|-
T Consensus 12 i~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~ 48 (85)
T PF07240_consen 12 IQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN 48 (85)
T ss_pred HHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3567776666666678899999999999999999884
No 16
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=23.95 E-value=3.1e+02 Score=20.38 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=19.0
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHHHHHhc
Q 028354 92 LEAIAPLDRGAEATPEDQQRVEQIARKLEGV 122 (210)
Q Consensus 92 L~aiagt~RG~~as~~qr~~IeelI~eLEal 122 (210)
|+.+...++-....++-...+...+++|++.
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa 40 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAA 40 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhC
Confidence 3444444444445566677777777777765
No 17
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=23.35 E-value=1.2e+02 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 028354 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE 127 (210)
Q Consensus 82 ~~~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt~~ 127 (210)
..+.+||++|-++|..-+- |+.+.|.+-|..|++.++..+
T Consensus 136 ~~I~~L~e~Lq~~i~~Eef------EeAA~iRDqIr~Lk~k~~~dd 175 (176)
T COG3880 136 RKIIALKEALQDLIEREEF------EEAAVIRDQIRALKAKNGGDD 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCC
Confidence 4678899999999987643 778899999999999987764
No 18
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=21.91 E-value=2.1e+02 Score=21.13 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEEEEE
Q 028354 105 TPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIY 142 (210)
Q Consensus 105 s~~qr~~IeelI~eLEalNPt~~P~~s~lL~G~W~LlY 142 (210)
++..+.+|...++.|+. .+ .|.--++-+|-|+|++
T Consensus 18 d~~~~~kI~~~i~~l~~-g~--~~~~K~l~~~~~ElR~ 52 (95)
T TIGR02683 18 DPRAKARILARIDRLAL-GN--FGDVKPVGEGVSELRI 52 (95)
T ss_pred CHHHHHHHHHHHHHHhc-cC--CCCccCCCCCcEEEEe
Confidence 45678899999999985 22 2322244556788877
No 19
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.78 E-value=1.2e+02 Score=25.41 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 028354 84 AKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120 (210)
Q Consensus 84 ~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLE 120 (210)
+..+++.|..+---+.|....+|++..++.++|+.|-
T Consensus 103 ~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR 139 (152)
T PF07278_consen 103 AKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLR 139 (152)
T ss_pred HHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4455666666666677889999999999999998874
No 20
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.76 E-value=1.3e+02 Score=25.48 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=25.5
Q ss_pred cccCcccHHHHHHHHHHHhccCCCCCCCCHHH
Q 028354 77 FLNKGKDAKVLKEELLEAIAPLDRGAEATPED 108 (210)
Q Consensus 77 ~~~~~~~~~~lK~~LL~aiagt~RG~~as~~q 108 (210)
+-+...-..+|..+|+.+..+..+|+.|-|+.
T Consensus 24 v~~~~~V~KRLq~ELm~Lmms~~~gISAFP~~ 55 (175)
T KOG0421|consen 24 VVDGHSVTKRLQSELMGLMMSNTPGISAFPES 55 (175)
T ss_pred cccCchHHHHHHHHHHHHHhcCCCCcccCcCc
Confidence 34445556789999999999999999887654
No 21
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=20.84 E-value=1.5e+02 Score=21.30 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC
Q 028354 101 GAEATPEDQQRVEQIARKLEGVN 123 (210)
Q Consensus 101 G~~as~~qr~~IeelI~eLEalN 123 (210)
|......|+..|+++++++++.+
T Consensus 37 GR~~~~~D~~~i~~i~~~~~~~~ 59 (76)
T PF07624_consen 37 GRPLEFSDRCEIDRIVEAFKANG 59 (76)
T ss_pred CCCCCcchHHHHHHHHHHHHHcC
Confidence 55666889999999999998765
No 22
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=20.14 E-value=1.4e+02 Score=22.27 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc
Q 028354 100 RGAEATPEDQQRVEQIARKLEGV 122 (210)
Q Consensus 100 RG~~as~~qr~~IeelI~eLEal 122 (210)
....+++++|+.+.++++++|..
T Consensus 15 ~~~~ld~~~~~~L~~l~~dIe~~ 37 (85)
T PF14357_consen 15 QNPPLDEETRAELSSLDDDIEAQ 37 (85)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777763
Done!