Query 028354
Match_columns 210
No_of_seqs 142 out of 336
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 59.3 66 0.0023 25.6 9.9 46 131-180 9-54 (142)
2 2a6s_A Toxin YOEB; YEFM, antit 56.9 35 0.0012 22.8 6.2 20 106-126 21-40 (84)
3 4gzv_A Hypothetical protein; A 56.7 73 0.0025 25.4 10.3 48 129-180 7-54 (142)
4 1z8m_A Conserved hypothetical 48.8 13 0.00046 25.2 3.0 34 110-143 25-70 (88)
5 2kvu_A MKL/myocardin-like prot 44.5 59 0.002 23.2 5.8 41 81-127 28-68 (75)
6 3g5o_B Uncharacterized protein 43.9 26 0.00088 25.3 4.0 21 105-126 34-55 (102)
7 3oei_C RELK (toxin RV3358); to 43.4 28 0.00094 25.6 4.1 19 106-125 33-51 (96)
8 1qbj_A Protein (double-strande 36.6 51 0.0017 23.2 4.5 56 85-143 9-72 (81)
9 1wmi_A RELE, hypothetical prot 30.8 50 0.0017 21.7 3.5 20 106-126 20-39 (90)
10 3p42_A Predicted protein; beta 25.8 52 0.0018 27.7 3.5 65 82-148 52-129 (236)
11 1qgp_A Protein (double strande 25.4 69 0.0024 22.0 3.5 52 86-140 14-73 (77)
12 1oyi_A Double-stranded RNA-bin 23.7 45 0.0015 24.0 2.3 42 80-123 11-58 (82)
13 2khe_A Toxin RELE, toxin-like 22.0 1.3E+02 0.0043 19.5 4.3 22 105-126 19-42 (89)
14 3fsi_A RT, reverse transcripta 21.6 52 0.0018 27.0 2.6 42 101-142 40-90 (255)
15 1uxc_A FRUR (1-57), fructose r 21.5 1.3E+02 0.0044 20.0 4.2 31 90-120 16-46 (65)
16 3bpq_B Toxin RELE3; protein to 21.2 1.4E+02 0.0049 19.4 4.5 18 106-123 18-35 (88)
17 2doa_A RNA polymerase II elong 21.0 54 0.0018 24.8 2.4 34 88-125 28-61 (104)
18 3op9_A PLI0006 protein; struct 20.6 1.3E+02 0.0044 21.0 4.3 32 88-125 83-114 (114)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=59.26 E-value=66 Score=25.62 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=30.2
Q ss_pred CCCCCceEEEEEecccccccccCCceeeeeceEEEEeCCCCeEEEeeeCC
Q 028354 131 SDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180 (210)
Q Consensus 131 s~lL~G~W~LlYTTs~~~lg~~~~p~l~vG~i~Q~ID~~~~rv~NvV~~p 180 (210)
..-|.|.|+|..--+.. .+-+.-|+.+..+.+|..| |+..|+.-.|
T Consensus 9 ~~~L~GvWQ~C~y~s~~---pd~~g~L~psn~lKIlSdD-gtF~Ni~m~~ 54 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSEN---PDIPGVLKPSNTFKVLSDD-GRIVNFTIRP 54 (142)
T ss_dssp CCSCCEEEEEEEEECSS---TTSCCEEEEEEEEEEECTT-SEEEEEECCT
T ss_pred cccceeEeEEEEEecCC---CCCceEeccCccEEEEcCC-CcEEEEEEec
Confidence 34599999998754432 2223345667777777655 6999987654
No 2
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=56.94 E-value=35 Score=22.85 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 028354 106 PEDQQRVEQIARKLEGVNPTK 126 (210)
Q Consensus 106 ~~qr~~IeelI~eLEalNPt~ 126 (210)
....+.|.++++.|+. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 4456888899988865 6654
No 3
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=56.69 E-value=73 Score=25.35 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=28.5
Q ss_pred CCCCCCCceEEEEEecccccccccCCceeeeeceEEEEeCCCCeEEEeeeCC
Q 028354 129 LKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180 (210)
Q Consensus 129 ~~s~lL~G~W~LlYTTs~~~lg~~~~p~l~vG~i~Q~ID~~~~rv~NvV~~p 180 (210)
....-|.|.|++.+--+... +.+.-++.+..+.+|..| |+..|++-.+
T Consensus 7 ~~~~~L~GvWQ~c~y~~~~~---~~~~~l~~s~~~KIlS~D-gtF~N~~m~~ 54 (142)
T 4gzv_A 7 FKAADLKGIWQLCHYVSESP---DVPGALKPSNTFKVLSDD-GRIVNFTIIP 54 (142)
T ss_dssp GGSCCCCEEEEEEEEEESST---TSCCEEEEEEEEEEECTT-SEEEEEECCT
T ss_pred cccccceEEeEEeeEeecCC---CCCceEeecCceEEECCC-CcEEEEEEeC
Confidence 34467999999985333221 111224456677777655 6888886443
No 4
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=48.81 E-value=13 Score=25.24 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCCCC-----CCCC-------CCCCceEEEEEe
Q 028354 110 QRVEQIARKLEGVNPTKE-----PLKS-------DLLNGKWELIYT 143 (210)
Q Consensus 110 ~~IeelI~eLEalNPt~~-----P~~s-------~lL~G~W~LlYT 143 (210)
..|.++++.|...||.+. |+.. =-+.|.|+|+|.
T Consensus 25 ~~~~~~i~~l~~~~p~~~~~~~~~L~G~~~g~~~~ri~~dyrliY~ 70 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYL 70 (88)
T ss_dssp HHHHHHHHHHTTSCCCCGGGCCEECSGGGTTSEECCSSTTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCcccCCCCcccCCCCCeEEEEECCCEEEEEE
Confidence 568888888865566542 3321 123566777774
No 5
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=44.51 E-value=59 Score=23.22 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 028354 81 GKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE 127 (210)
Q Consensus 81 ~~~~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt~~ 127 (210)
...+.+||++|-. ||+.++--..+-|++|.+.++..++.+.
T Consensus 28 klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~~ 68 (75)
T 2kvu_A 28 DMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVPG 68 (75)
T ss_dssp TSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCSS
T ss_pred HCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCCC
Confidence 4578899997764 7887766666777777777777665543
No 6
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=43.90 E-value=26 Score=25.29 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCC
Q 028354 105 TPEDQQRVEQIA-RKLEGVNPTK 126 (210)
Q Consensus 105 s~~qr~~IeelI-~eLEalNPt~ 126 (210)
.+..+++|.+.| ++|+ .||.+
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~ 55 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLR 55 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTT
T ss_pred CHHHHHHHHHHHHHHHH-hCccc
Confidence 456778898988 7785 57764
No 7
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=43.37 E-value=28 Score=25.57 Aligned_cols=19 Identities=11% Similarity=0.406 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 028354 106 PEDQQRVEQIARKLEGVNPT 125 (210)
Q Consensus 106 ~~qr~~IeelI~eLEalNPt 125 (210)
+..+++|.++|++|+ .||-
T Consensus 33 k~~~krI~~~I~~l~-~nP~ 51 (96)
T 3oei_C 33 RKTARRITRLIGEIQ-RDPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHHHHH-hCCC
Confidence 466789999999987 4775
No 8
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=36.64 E-value=51 Score=23.19 Aligned_cols=56 Identities=11% Similarity=0.256 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCCCCCCCCCCceEEEEEe
Q 028354 85 KVLKEELLEAIAPLDRGAEATPE--------DQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYT 143 (210)
Q Consensus 85 ~~lK~~LL~aiagt~RG~~as~~--------qr~~IeelI~eLEalNPt~~P~~s~lL~G~W~LlYT 143 (210)
.+..++||+++....-|-.++.. .|..|...+..||..+-...--. =.|.|++.-.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~---~~~~W~i~~~ 72 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS---SSCEEEEC--
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCeeEEeCc
Confidence 35677888888876655555532 26789999999998764321101 1289988643
No 9
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=30.77 E-value=50 Score=21.66 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 028354 106 PEDQQRVEQIARKLEGVNPTK 126 (210)
Q Consensus 106 ~~qr~~IeelI~eLEalNPt~ 126 (210)
+..+++|.+.++.|+. ||..
T Consensus 20 ~~~~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 20 KAHYRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp HHHHHHHHHHHHHHTT-CSCC
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 5566788888888854 5644
No 10
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=25.83 E-value=52 Score=27.66 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC-------------CCCCCCCCceEEEEEeccccc
Q 028354 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE-------------PLKSDLLNGKWELIYTTSQSI 148 (210)
Q Consensus 82 ~~~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt~~-------------P~~s~lL~G~W~LlYTTs~~~ 148 (210)
+..++.|++||+.++.... ....++.+.+..++++|+...++.+ |...+.|+|...|..-..+.+
T Consensus 52 ~~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~n~~L~~gd~L~iP~r~~t 129 (236)
T 3p42_A 52 AKALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVT 129 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGGSCBCCEEEEEECCCCCSE
T ss_pred HHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCCCCccCCCCEEEECCCCCE
Confidence 3456788888888754431 1223567789999999999886653 223478999999888777664
No 11
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.40 E-value=69 Score=21.99 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCCCCCCCCCCceEEE
Q 028354 86 VLKEELLEAIAPLDRGAEATPE--------DQQRVEQIARKLEGVNPTKEPLKSDLLNGKWEL 140 (210)
Q Consensus 86 ~lK~~LL~aiagt~RG~~as~~--------qr~~IeelI~eLEalNPt~~P~~s~lL~G~W~L 140 (210)
+..+++|+++.....|-.++.. .+..|...+..||..+-...-... .|.|++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~---~~~W~i 73 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT---PPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSS---SCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC---CCceEe
Confidence 3457788888877754444432 257899999999987633221111 288876
No 12
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.70 E-value=45 Score=23.98 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=30.4
Q ss_pred CcccHHHHHHHHHHHhccCCCCCCCCH------HHHHHHHHHHHHHHhcC
Q 028354 80 KGKDAKVLKEELLEAIAPLDRGAEATP------EDQQRVEQIARKLEGVN 123 (210)
Q Consensus 80 ~~~~~~~lK~~LL~aiagt~RG~~as~------~qr~~IeelI~eLEalN 123 (210)
++.+....++++|+.+.. +|+.+.+ -.+..|...+..||..+
T Consensus 11 ~d~~~~~~~~~IL~lL~~--~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 11 DERSNAEIVCEAIKTIGI--EGATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp --CCSHHHHHHHHHHHSS--STEEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456888999999999994 5533322 13678999999999865
No 13
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=22.03 E-value=1.3e+02 Score=19.51 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHH--hcCCCC
Q 028354 105 TPEDQQRVEQIARKLE--GVNPTK 126 (210)
Q Consensus 105 s~~qr~~IeelI~eLE--alNPt~ 126 (210)
.+..+++|.+.|++|. ..+|..
T Consensus 19 ~~~~~~~i~~~i~~l~~~~~~P~~ 42 (89)
T 2khe_A 19 DREVARRILRFLRERVATLEDPRS 42 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred CHHHHHHHHHHHHHhhccccCCCc
Confidence 3556677778777774 345544
No 14
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=21.61 E-value=52 Score=27.01 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCCCCC------CceEEEEE
Q 028354 101 GAEATPEDQQRVEQIARKLEGVN---PTKEPLKSDLL------NGKWELIY 142 (210)
Q Consensus 101 G~~as~~qr~~IeelI~eLEalN---Pt~~P~~s~lL------~G~W~LlY 142 (210)
-...+++++++|.+.|++|+..+ |...|-.++.+ .|+||++.
T Consensus 40 ~~~~~~~~~~~~~~~i~~ll~~G~I~~~~sp~~sp~~~V~Kk~~g~~R~~~ 90 (255)
T 3fsi_A 40 QYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTSEEEECCSCBCCBCCC-------CCCCB
T ss_pred CccCCHHHHHHHHHHHHHHHhCCeEEecCCCeECceeEeecCCCCceeEEe
Confidence 34567888999999999998875 22233333222 49999865
No 15
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.49 E-value=1.3e+02 Score=19.98 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 028354 90 ELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120 (210)
Q Consensus 90 ~LL~aiagt~RG~~as~~qr~~IeelI~eLE 120 (210)
.+-+.+.+......++++.+++|.+++++|.
T Consensus 16 TVSrvLng~~~~~~vs~et~~rI~~aa~~lg 46 (65)
T 1uxc_A 16 TASYVINGKAKQYRVSDKTVEKVMAVVREHN 46 (65)
T ss_dssp HHHHHHHTCTTTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 3344555543223688999999999998883
No 16
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=21.16 E-value=1.4e+02 Score=19.35 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 028354 106 PEDQQRVEQIARKLEGVN 123 (210)
Q Consensus 106 ~~qr~~IeelI~eLEalN 123 (210)
+..++.|.++++.++.+.
T Consensus 18 ~~~~~~i~~~i~~~~~l~ 35 (88)
T 3bpq_B 18 GHIRKRIKLIIEECQNSN 35 (88)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 556677888888887653
No 17
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=21.00 E-value=54 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=25.3
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 028354 88 KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPT 125 (210)
Q Consensus 88 K~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt 125 (210)
|.+|+.-+. .+| +++.|++.|..++.+...+||.
T Consensus 28 k~EL~~RL~--kdG--l~~~d~~~l~~iL~eVA~~~~~ 61 (104)
T 2doa_A 28 KAELLLRLQ--KDG--LTQADKDALDGLLQQVANMSAK 61 (104)
T ss_dssp HHHHHHHHH--HHC--CCHHHHHHHHHHHHHSSEECSS
T ss_pred cHHHHHHHH--HcC--CCHHHHHHHHHHHHHHHhcCCc
Confidence 345555555 345 6788999999999999999873
No 18
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=20.57 E-value=1.3e+02 Score=21.04 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 028354 88 KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPT 125 (210)
Q Consensus 88 K~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt 125 (210)
..+++..+.. .++++++.|.++++.++.+.|+
T Consensus 83 ~~~~~~~l~~------~~~~~~~~i~~~i~~i~~~~pn 114 (114)
T 3op9_A 83 LKQWLLSLNL------RSEEEIAKIKILVDTVETLYPN 114 (114)
T ss_dssp HHHHHHHGGG------SCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHHHHHHcCC
Confidence 3445556655 5789999999999999998764
Done!