Query 028354
Match_columns 210
No_of_seqs 142 out of 336
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 16:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028354.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028354hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 48.7 7.2 0.00052 33.7 4.2 42 101-142 21-73 (427)
2 d1ztwa1 e.8.1.2 (A:24-278) MML 24.0 24 0.0018 27.5 3.1 43 100-142 39-90 (255)
3 d1qpza1 a.35.1.5 (A:2-58) Puri 20.0 36 0.0026 21.1 2.7 18 103-120 26-43 (57)
4 d1o75a2 b.1.20.1 (A:333-414) T 20.0 12 0.00089 24.8 0.4 22 184-205 53-74 (82)
5 d2gyc31 a.108.1.1 (3:2-48) Rib 19.8 34 0.0025 20.9 2.4 30 88-126 3-32 (47)
6 d2hsga1 a.35.1.5 (A:2-58) Gluc 19.5 37 0.0027 21.0 2.7 18 103-120 27-44 (57)
7 d1hara_ e.8.1.2 (A:) HIV-1 rev 19.4 51 0.0037 25.3 4.2 42 101-142 23-75 (216)
8 d2q22a1 d.365.1.1 (A:8-138) Un 19.2 38 0.0027 24.6 3.1 60 81-142 25-87 (131)
9 d1wmia1 d.298.1.2 (A:1-88) Hyp 17.9 51 0.0037 21.2 3.3 23 105-128 19-41 (88)
10 d2ov9a1 d.38.1.5 (A:7-209) Hyp 17.2 90 0.0066 23.4 5.2 42 84-125 24-65 (203)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=48.67 E-value=7.2 Score=33.73 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCC-----CCCCCCCCC------CceEEEEE
Q 028354 101 GAEATPEDQQRVEQIARKLEGVNPT-----KEPLKSDLL------NGKWELIY 142 (210)
Q Consensus 101 G~~as~~qr~~IeelI~eLEalNPt-----~~P~~s~lL------~G~W~LlY 142 (210)
--..+++++++|.++|++|+..+-. ..|-.++.+ .|+||++-
T Consensus 21 q~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 21 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 4467899999999999999998733 345555443 39999985
No 2
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=24.00 E-value=24 Score=27.50 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCCCC-----C-CceEEEEE
Q 028354 100 RGAEATPEDQQRVEQIARKLEGVN---PTKEPLKSDL-----L-NGKWELIY 142 (210)
Q Consensus 100 RG~~as~~qr~~IeelI~eLEalN---Pt~~P~~s~l-----L-~G~W~LlY 142 (210)
|-...++++++++.+.|++|...+ |...|-.++. = .|+||++-
T Consensus 39 ~~~~~~~~~~~~l~~~i~~ll~~G~I~p~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 39 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTSEEEECCSCBCCEEECCSSSSCCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhceeeecCCCcccccccccccccceEEEee
Confidence 344578899999999999999886 3333444422 2 47899986
No 3
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.98 E-value=36 Score=21.10 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028354 103 EATPEDQQRVEQIARKLE 120 (210)
Q Consensus 103 ~as~~qr~~IeelI~eLE 120 (210)
.++++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999999884
No 4
>d1o75a2 b.1.20.1 (A:333-414) Tp47 lipoprotein, middle and C-terminal domains {Treponema pallidum [TaxId: 160]}
Probab=19.96 E-value=12 Score=24.78 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.0
Q ss_pred eEEeEEEEeCCCeEEEEEeeeE
Q 028354 184 QVTADLTPLNSRKVAVQFDYFK 205 (210)
Q Consensus 184 ~V~A~fe~~s~kRV~V~Fe~~~ 205 (210)
...|+|+|-.+..|+|+|++++
T Consensus 53 vlsadftpgteytvevrfkefg 74 (82)
T d1o75a2 53 VLSADFTPGTEYTVEVRFKEFG 74 (82)
T ss_dssp EEEEEECTTCEEEEEEECSSSC
T ss_pred eeccccCCCceEEEEEEeeccc
Confidence 5689999999999999999763
No 5
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=19.78 E-value=34 Score=20.86 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=23.4
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 028354 88 KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126 (210)
Q Consensus 88 K~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt~ 126 (210)
|+++|++|+... --+|-+||..+|......
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhCcc
Confidence 788999998763 367889999999876544
No 6
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=19.50 E-value=37 Score=21.03 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028354 103 EATPEDQQRVEQIARKLE 120 (210)
Q Consensus 103 ~as~~qr~~IeelI~eLE 120 (210)
.++++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 479999999999999984
No 7
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=19.38 E-value=51 Score=25.28 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCC-----CCCCCCCCC-----Cc-eEEEEE
Q 028354 101 GAEATPEDQQRVEQIARKLEGVNPT-----KEPLKSDLL-----NG-KWELIY 142 (210)
Q Consensus 101 G~~as~~qr~~IeelI~eLEalNPt-----~~P~~s~lL-----~G-~W~LlY 142 (210)
--..+++++++|.+.|++|+..+-. ..|-.++.+ +| +||+.-
T Consensus 23 ~ypl~~~~~~~l~~~i~~ll~~G~I~~~~s~s~~~sPv~~v~Kk~g~k~R~~v 75 (216)
T d1hara_ 23 QWPLTAAKIAALVAICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWAKLV 75 (216)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTSEEECCTTCCCBCCEEEC-------CCEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCcEEECCCCCCCcceEEEEEeCCCCcceeec
Confidence 3467889999999999999998633 234444332 45 599874
No 8
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=19.17 E-value=38 Score=24.64 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=36.5
Q ss_pred cccHHHHHHHHHHHhccCCC---CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEEEEE
Q 028354 81 GKDAKVLKEELLEAIAPLDR---GAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIY 142 (210)
Q Consensus 81 ~~~~~~lK~~LL~aiagt~R---G~~as~~qr~~IeelI~eLEalNPt~~P~~s~lL~G~W~LlY 142 (210)
..+++.++++|...+...+. |+.|...+ ++|+ ++..+++.-.-+.+.+.+..+|-=-|-|
T Consensus 25 ~~q~~~L~~eL~~~~~~adw~tiGImA~s~~-~Ai~-ALrs~~~~~~~~~~~d~~~~~G~VfLK~ 87 (131)
T d2q22a1 25 PSEKESVRRALILITKLSDYQILGICADTAD-EGLL-AMKTYSHALGYEVPIDLPVVEGPVYIKL 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEEEESSHH-HHHH-HHHHHHHHTTCCCC-CCCCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCHH-HHHH-HHHHHHHHhCCCccCCCCCCCCcEEEEe
Confidence 34789999999999999996 88876544 3333 4444444444444555544445333333
No 9
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.92 E-value=51 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCC
Q 028354 105 TPEDQQRVEQIARKLEGVNPTKEP 128 (210)
Q Consensus 105 s~~qr~~IeelI~eLEalNPt~~P 128 (210)
.+..+.+|.+.+++|+. ||.+.|
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~~ 41 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPRE 41 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCHH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcCC
Confidence 46778888888888764 665543
No 10
>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=17.22 E-value=90 Score=23.38 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 028354 84 AKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPT 125 (210)
Q Consensus 84 ~~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt 125 (210)
..+.-++|.+++..++-+-..-.+..++|++++++|+...+.
T Consensus 24 ~~~a~R~l~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 65 (203)
T d2ov9a1 24 ATDAARRVVDALLRTDRGNANLERVAEELNSIAGHLEEHAPA 65 (203)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhhccccC
Confidence 445667899999999887777778889999999999987543
Done!