Query 028356
Match_columns 210
No_of_seqs 235 out of 664
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 8.8E-29 1.9E-33 209.1 16.1 136 1-138 3-141 (218)
2 COG5066 SCS2 VAMP-associated p 100.0 3.7E-28 8E-33 202.8 13.1 118 7-126 3-121 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 9.4E-24 2E-28 159.2 12.8 103 7-110 2-106 (109)
4 PF14874 PapD-like: Flagellar- 98.6 6.9E-07 1.5E-11 66.5 11.5 70 5-74 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.1 0.0074 1.6E-07 46.2 10.4 107 7-126 2-117 (122)
6 PF14646 MYCBPAP: MYCBP-associ 94.7 0.24 5.2E-06 46.2 9.5 63 13-75 238-313 (426)
7 PRK09918 putative fimbrial cha 94.4 0.53 1.1E-05 40.5 10.4 104 7-126 26-134 (230)
8 PRK11385 putativi pili assembl 93.8 2.9 6.3E-05 36.2 13.9 106 7-126 28-145 (236)
9 PRK09926 putative chaperone pr 93.8 0.82 1.8E-05 39.7 10.4 86 6-96 26-121 (246)
10 PF07610 DUF1573: Protein of u 93.8 0.45 9.7E-06 30.5 6.6 43 28-71 2-45 (45)
11 PRK15249 fimbrial chaperone pr 93.5 0.9 2E-05 39.7 10.2 86 6-96 29-125 (253)
12 PRK15299 fimbrial chaperone pr 93.3 2.4 5.3E-05 36.3 12.5 85 6-96 23-115 (227)
13 PF11614 FixG_C: IG-like fold 93.1 0.56 1.2E-05 35.6 7.4 50 25-74 34-85 (118)
14 PRK15211 fimbrial chaperone pr 93.0 2.7 5.9E-05 36.2 12.3 84 7-96 24-113 (229)
15 PRK15295 fimbrial assembly cha 93.0 2.8 6.1E-05 35.9 12.4 84 7-96 21-111 (226)
16 PRK15246 fimbrial assembly cha 92.3 1.8 3.9E-05 37.4 10.3 85 7-96 12-106 (233)
17 PRK15290 lfpB fimbrial chapero 91.5 6.4 0.00014 34.3 12.8 109 7-127 39-155 (243)
18 PRK15192 fimbrial chaperone Bc 90.2 5.3 0.00012 34.6 11.1 82 7-96 24-119 (234)
19 PRK15208 long polar fimbrial c 89.4 5.6 0.00012 34.1 10.6 85 6-96 22-112 (228)
20 COG3121 FimC P pilus assembly 87.7 10 0.00022 32.7 11.1 84 7-96 29-119 (235)
21 PRK15188 fimbrial chaperone pr 87.4 7.8 0.00017 33.4 10.2 108 7-126 29-142 (228)
22 PF06280 DUF1034: Fn3-like dom 87.1 2.2 4.8E-05 32.1 6.0 54 21-74 7-81 (112)
23 PRK15195 fimbrial chaperone pr 87.1 6.9 0.00015 33.6 9.7 84 7-96 27-116 (229)
24 PF10482 CtIP_N: Tumour-suppre 86.1 1.2 2.6E-05 34.5 4.0 30 176-205 90-119 (120)
25 PRK15254 fimbrial chaperone pr 85.8 11 0.00024 32.7 10.4 85 7-96 18-110 (239)
26 PRK15422 septal ring assembly 85.5 1.4 3.1E-05 32.0 3.8 35 171-205 28-62 (79)
27 PRK15218 fimbrial chaperone pr 83.4 25 0.00055 30.2 11.4 105 7-126 20-137 (226)
28 TIGR03079 CH4_NH3mon_ox_B meth 82.2 3.5 7.6E-05 38.1 5.9 54 20-73 280-354 (399)
29 smart00809 Alpha_adaptinC2 Ada 81.6 9.8 0.00021 27.7 7.3 54 21-74 17-74 (104)
30 PRK15224 pili assembly chapero 81.2 30 0.00064 30.0 11.1 80 9-96 32-118 (237)
31 PRK15233 putative fimbrial cha 80.5 20 0.00043 31.3 9.8 80 9-96 44-130 (246)
32 PF10633 NPCBM_assoc: NPCBM-as 79.6 3.4 7.4E-05 29.0 4.0 57 21-77 4-64 (78)
33 PRK15285 putative fimbrial cha 78.9 41 0.0009 29.4 11.3 83 9-96 29-119 (250)
34 COG3074 Uncharacterized protei 78.9 3.7 8E-05 29.3 3.8 34 171-204 28-61 (79)
35 PF06005 DUF904: Protein of un 78.3 6.1 0.00013 28.1 4.9 29 177-205 27-55 (72)
36 PRK15274 putative periplasmic 78.1 47 0.001 29.2 11.5 83 9-96 30-120 (257)
37 PRK15253 putative fimbrial ass 77.3 48 0.001 28.8 11.4 81 8-96 36-128 (242)
38 PF05377 FlaC_arch: Flagella a 76.9 7.4 0.00016 26.4 4.7 30 177-206 2-31 (55)
39 PF04977 DivIC: Septum formati 75.9 7.2 0.00016 27.0 4.8 31 177-207 19-49 (80)
40 PF02183 HALZ: Homeobox associ 75.6 7.3 0.00016 25.2 4.3 30 177-206 7-36 (45)
41 PF06005 DUF904: Protein of un 74.9 7.5 0.00016 27.6 4.6 33 172-204 8-40 (72)
42 PF05506 DUF756: Domain of unk 72.9 15 0.00033 26.4 6.0 41 24-71 20-65 (89)
43 PF00927 Transglut_C: Transglu 72.4 17 0.00037 26.8 6.4 55 20-74 13-77 (107)
44 PF06156 DUF972: Protein of un 69.5 15 0.00033 28.0 5.5 35 172-206 19-53 (107)
45 PF02883 Alpha_adaptinC2: Adap 68.9 20 0.00043 26.7 6.1 53 21-73 23-79 (115)
46 PRK00888 ftsB cell division pr 67.8 12 0.00025 28.4 4.6 30 177-206 29-58 (105)
47 PF07716 bZIP_2: Basic region 67.6 12 0.00025 24.7 4.0 30 175-204 25-54 (54)
48 COG3074 Uncharacterized protei 66.9 11 0.00023 27.0 3.8 35 172-206 8-42 (79)
49 PF04744 Monooxygenase_B: Mono 66.3 30 0.00066 32.1 7.7 65 7-73 249-335 (381)
50 KOG1962 B-cell receptor-associ 65.4 8.5 0.00018 33.1 3.7 38 171-208 175-212 (216)
51 PRK13169 DNA replication intia 65.2 21 0.00045 27.5 5.5 34 173-206 20-53 (110)
52 PF11611 DUF4352: Domain of un 64.5 37 0.0008 25.1 6.8 52 22-73 36-101 (123)
53 PF06156 DUF972: Protein of un 64.0 15 0.00032 28.1 4.5 35 172-206 12-46 (107)
54 PF06030 DUF916: Bacterial pro 63.9 56 0.0012 25.2 7.9 28 16-43 21-48 (121)
55 PRK15422 septal ring assembly 63.6 16 0.00034 26.6 4.3 35 172-206 8-42 (79)
56 PRK10884 SH3 domain-containing 63.5 12 0.00025 31.9 4.2 35 172-206 122-156 (206)
57 PF02753 PapD_C: Pili assembly 61.9 7.2 0.00016 26.5 2.3 43 28-70 1-44 (68)
58 TIGR02745 ccoG_rdxA_fixG cytoc 61.0 61 0.0013 30.7 8.9 68 23-92 347-416 (434)
59 PF12690 BsuPI: Intracellular 59.9 53 0.0011 23.6 6.6 22 24-45 2-23 (82)
60 TIGR02209 ftsL_broad cell divi 59.8 22 0.00048 25.1 4.6 32 176-207 25-56 (85)
61 PF01166 TSC22: TSC-22/dip/bun 59.4 28 0.00061 23.9 4.7 30 175-204 14-43 (59)
62 smart00340 HALZ homeobox assoc 59.3 20 0.00044 23.0 3.7 20 186-205 9-28 (44)
63 PF14775 NYD-SP28_assoc: Sperm 58.3 23 0.0005 24.2 4.2 31 175-205 26-56 (60)
64 KOG3119 Basic region leucine z 56.6 19 0.00041 31.8 4.5 36 172-207 212-247 (269)
65 PF00553 CBM_2: Cellulose bind 56.0 33 0.00071 25.3 5.2 52 22-73 13-84 (101)
66 smart00338 BRLZ basic region l 55.2 25 0.00054 23.8 4.0 26 179-204 30-55 (65)
67 PRK15308 putative fimbrial pro 54.7 1.4E+02 0.0031 25.8 10.7 83 7-97 18-118 (234)
68 PF13473 Cupredoxin_1: Cupredo 53.4 78 0.0017 23.1 6.8 52 8-71 31-82 (104)
69 smart00637 CBD_II CBD_II domai 53.3 81 0.0018 22.5 6.9 48 24-71 8-75 (92)
70 PF10224 DUF2205: Predicted co 53.1 27 0.00058 25.4 4.1 36 169-204 24-59 (80)
71 PF09738 DUF2051: Double stran 52.9 33 0.00072 30.9 5.5 37 170-206 86-122 (302)
72 PF02183 HALZ: Homeobox associ 52.1 34 0.00073 22.1 4.0 35 172-206 9-43 (45)
73 PF03173 CHB_HEX: Putative car 51.8 20 0.00042 29.4 3.6 34 40-73 69-104 (164)
74 PF04999 FtsL: Cell division p 51.7 37 0.00081 24.7 4.8 31 177-207 37-67 (97)
75 PF12709 Kinetocho_Slk19: Cent 49.6 34 0.00074 25.3 4.2 27 181-207 48-74 (87)
76 PF05753 TRAP_beta: Translocon 49.3 1E+02 0.0022 25.5 7.6 54 20-74 36-98 (181)
77 TIGR03752 conj_TIGR03752 integ 49.0 30 0.00065 33.1 4.7 32 175-206 59-90 (472)
78 smart00338 BRLZ basic region l 48.6 52 0.0011 22.2 4.8 34 172-205 30-63 (65)
79 PF00170 bZIP_1: bZIP transcri 48.1 40 0.00087 22.7 4.2 29 177-205 28-56 (64)
80 TIGR00219 mreC rod shape-deter 47.9 42 0.0009 29.8 5.3 33 174-206 72-108 (283)
81 PRK13169 DNA replication intia 47.8 40 0.00087 25.9 4.5 34 173-206 13-46 (110)
82 PF00170 bZIP_1: bZIP transcri 47.4 59 0.0013 21.9 4.9 35 171-205 29-63 (64)
83 PRK14127 cell division protein 45.6 52 0.0011 25.3 4.8 30 177-206 32-61 (109)
84 PRK13922 rod shape-determining 44.2 58 0.0013 28.2 5.6 35 172-206 73-110 (276)
85 PF07716 bZIP_2: Basic region 43.9 61 0.0013 21.2 4.4 29 179-207 22-50 (54)
86 PF04728 LPP: Lipoprotein leuc 42.5 64 0.0014 21.9 4.3 32 176-207 11-42 (56)
87 KOG4005 Transcription factor X 42.2 1.9E+02 0.0041 25.5 8.2 30 175-204 90-119 (292)
88 TIGR02449 conserved hypothetic 41.3 55 0.0012 22.9 4.0 29 178-206 24-52 (65)
89 PF08606 Prp19: Prp19/Pso4-lik 39.9 34 0.00073 24.3 2.8 26 177-202 45-70 (70)
90 PF14796 AP3B1_C: Clathrin-ada 39.1 1.7E+02 0.0037 23.6 7.1 49 23-71 86-138 (145)
91 PF07334 IFP_35_N: Interferon- 38.9 53 0.0012 23.7 3.7 21 185-205 3-23 (76)
92 KOG4673 Transcription factor T 38.4 40 0.00087 34.0 3.9 34 176-209 410-443 (961)
93 smart00340 HALZ homeobox assoc 37.4 75 0.0016 20.4 3.8 25 179-203 9-33 (44)
94 PF07705 CARDB: CARDB; InterP 37.4 1.4E+02 0.003 20.8 5.9 55 20-74 17-72 (101)
95 PF09738 DUF2051: Double stran 36.2 44 0.00096 30.1 3.7 24 183-206 220-243 (302)
96 PF10498 IFT57: Intra-flagella 35.6 83 0.0018 29.0 5.4 37 171-207 283-319 (359)
97 COG4467 Regulator of replicati 35.4 1.1E+02 0.0023 23.7 5.0 29 177-205 24-52 (114)
98 PRK10265 chaperone-modulator p 35.0 89 0.0019 23.2 4.6 30 178-207 67-96 (101)
99 KOG4196 bZIP transcription fac 34.7 92 0.002 24.8 4.7 28 179-206 78-105 (135)
100 PF05308 Mito_fiss_reg: Mitoch 33.9 59 0.0013 28.5 4.0 25 177-201 117-141 (253)
101 KOG0972 Huntingtin interacting 33.5 55 0.0012 29.7 3.7 38 170-207 289-326 (384)
102 KOG4196 bZIP transcription fac 33.4 1.1E+02 0.0024 24.3 5.0 24 183-206 75-98 (135)
103 COG4026 Uncharacterized protei 33.1 66 0.0014 28.1 4.0 36 172-207 132-167 (290)
104 PRK09039 hypothetical protein; 32.9 65 0.0014 29.3 4.2 36 171-206 126-161 (343)
105 TIGR02449 conserved hypothetic 32.9 1.3E+02 0.0028 21.0 4.8 32 173-204 5-36 (65)
106 PF09640 DUF2027: Domain of un 32.5 82 0.0018 25.9 4.3 66 24-96 18-83 (162)
107 PF10342 GPI-anchored: Ser-Thr 32.4 1.7E+02 0.0038 20.3 7.2 58 12-70 15-77 (93)
108 cd04766 HTH_HspR Helix-Turn-He 32.2 98 0.0021 22.2 4.4 33 174-207 58-90 (91)
109 PF14197 Cep57_CLD_2: Centroso 32.1 66 0.0014 22.5 3.3 19 188-206 46-64 (69)
110 COG4467 Regulator of replicati 31.3 95 0.0021 24.0 4.2 34 173-206 13-46 (114)
111 PF13815 Dzip-like_N: Iguana/D 31.2 78 0.0017 24.2 3.8 31 174-204 86-116 (118)
112 PF14197 Cep57_CLD_2: Centroso 30.8 1.4E+02 0.003 20.9 4.7 28 175-202 40-67 (69)
113 KOG4191 Histone acetyltransfer 30.6 98 0.0021 29.7 5.0 33 175-207 401-433 (516)
114 PF04728 LPP: Lipoprotein leuc 30.5 1.4E+02 0.0031 20.2 4.5 28 177-204 5-32 (56)
115 PF13591 MerR_2: MerR HTH fami 30.4 73 0.0016 22.8 3.4 26 178-203 59-84 (84)
116 PF11461 RILP: Rab interacting 30.3 74 0.0016 21.9 3.2 21 186-206 7-27 (60)
117 KOG0860 Synaptobrevin/VAMP-lik 30.2 2.3E+02 0.005 22.1 6.2 37 172-208 54-90 (116)
118 TIGR02656 cyanin_plasto plasto 30.2 1.7E+02 0.0037 21.2 5.4 59 6-70 11-75 (99)
119 PF07407 Seadorna_VP6: Seadorn 30.0 64 0.0014 29.7 3.6 20 173-192 44-63 (420)
120 PF13205 Big_5: Bacterial Ig-l 29.9 2E+02 0.0044 20.3 7.3 56 13-71 26-84 (107)
121 PRK15249 fimbrial chaperone pr 29.9 1.2E+02 0.0027 26.3 5.3 42 27-69 177-219 (253)
122 PF00631 G-gamma: GGL domain; 29.8 50 0.0011 22.7 2.3 18 190-207 3-20 (68)
123 COG3937 Uncharacterized conser 29.8 75 0.0016 24.4 3.4 23 185-207 86-108 (108)
124 PF08776 VASP_tetra: VASP tetr 29.4 89 0.0019 19.8 3.1 26 176-207 12-37 (40)
125 COG3121 FimC P pilus assembly 29.3 1.1E+02 0.0023 26.3 4.8 43 26-70 165-209 (235)
126 PRK10884 SH3 domain-containing 29.0 92 0.002 26.4 4.2 32 173-204 137-168 (206)
127 PF08172 CASP_C: CASP C termin 29.0 2.9E+02 0.0064 24.1 7.5 42 161-202 85-127 (248)
128 KOG4005 Transcription factor X 28.0 84 0.0018 27.7 3.8 37 170-206 78-114 (292)
129 PF05103 DivIVA: DivIVA protei 28.0 1.4E+02 0.003 22.5 4.8 28 179-206 22-49 (131)
130 PF11906 DUF3426: Protein of u 27.9 2.5E+02 0.0054 21.7 6.4 52 22-73 68-136 (149)
131 PF07558 Shugoshin_N: Shugoshi 27.6 76 0.0016 20.4 2.7 29 178-206 17-45 (46)
132 PF01920 Prefoldin_2: Prefoldi 27.5 1.2E+02 0.0026 21.8 4.2 36 172-207 66-101 (106)
133 PF14802 TMEM192: TMEM192 fami 27.3 1.8E+02 0.004 25.2 5.9 28 180-207 207-234 (236)
134 PF12325 TMF_TATA_bd: TATA ele 26.8 2.3E+02 0.0049 22.0 5.8 19 183-201 38-56 (120)
135 PF02403 Seryl_tRNA_N: Seryl-t 26.6 2.4E+02 0.0051 20.7 5.7 33 175-207 67-99 (108)
136 PF06483 ChiC: Chitinase C; I 26.6 78 0.0017 26.5 3.3 26 36-72 116-141 (180)
137 cd06409 PB1_MUG70 The MUG70 pr 26.4 43 0.00092 24.6 1.5 22 39-60 2-25 (86)
138 smart00605 CW CW domain. 26.4 82 0.0018 22.7 3.1 22 27-48 58-80 (94)
139 PF08277 PAN_3: PAN-like domai 26.3 98 0.0021 20.7 3.3 19 24-42 53-71 (71)
140 PF03980 Nnf1: Nnf1 ; InterPr 26.2 1.6E+02 0.0034 21.9 4.7 28 180-207 78-105 (109)
141 PF08172 CASP_C: CASP C termin 26.0 1.1E+02 0.0023 26.8 4.2 33 172-204 90-122 (248)
142 PF02344 Myc-LZ: Myc leucine z 26.0 1.6E+02 0.0034 17.7 4.2 22 185-206 4-25 (32)
143 COG1470 Predicted membrane pro 25.8 6.2E+02 0.013 24.6 10.7 100 5-126 380-483 (513)
144 PRK10722 hypothetical protein; 25.6 1.3E+02 0.0028 26.4 4.6 32 176-207 159-194 (247)
145 PRK00888 ftsB cell division pr 25.6 99 0.0021 23.3 3.5 32 172-203 31-62 (105)
146 PF14988 DUF4515: Domain of un 25.4 2.1E+02 0.0045 24.2 5.8 39 168-206 163-201 (206)
147 PRK10803 tol-pal system protei 25.3 1.2E+02 0.0026 26.5 4.4 30 178-207 57-86 (263)
148 PF14054 DUF4249: Domain of un 25.2 3E+02 0.0065 23.5 7.0 49 24-73 61-110 (298)
149 PF03168 LEA_2: Late embryogen 25.2 1.9E+02 0.004 20.1 4.8 46 27-72 1-52 (101)
150 PRK15361 pathogenicity island 25.1 2.4E+02 0.0053 23.8 5.9 32 178-209 39-70 (195)
151 PF08912 Rho_Binding: Rho Bind 24.9 2E+02 0.0043 20.4 4.6 19 173-191 15-33 (69)
152 PF04576 Zein-binding: Zein-bi 24.9 1.4E+02 0.0031 22.4 4.1 28 175-202 31-58 (94)
153 PF01486 K-box: K-box region; 24.7 1.5E+02 0.0033 21.6 4.3 31 176-206 69-99 (100)
154 PF01763 Herpes_UL6: Herpesvir 24.6 2.5E+02 0.0055 27.6 6.8 34 174-207 369-402 (557)
155 KOG1769 Ubiquitin-like protein 24.6 92 0.002 23.6 3.1 26 24-49 19-44 (99)
156 PF10883 DUF2681: Protein of u 24.6 1.2E+02 0.0026 22.4 3.7 18 179-196 27-44 (87)
157 PF04977 DivIC: Septum formati 24.3 1.1E+02 0.0024 20.8 3.3 29 173-201 22-50 (80)
158 TIGR02338 gimC_beta prefoldin, 24.2 1.4E+02 0.003 22.3 4.1 37 172-208 71-107 (110)
159 PF04111 APG6: Autophagy prote 24.1 1.3E+02 0.0027 27.1 4.5 32 175-206 57-88 (314)
160 KOG3646 Acetylcholine receptor 23.9 84 0.0018 30.2 3.3 66 13-88 100-170 (486)
161 PF11175 DUF2961: Protein of u 23.8 2.1E+02 0.0045 24.9 5.5 38 5-44 40-83 (237)
162 KOG3865 Arrestin [Signal trans 23.8 1.1E+02 0.0024 28.1 4.0 70 1-74 190-277 (402)
163 PF05377 FlaC_arch: Flagella a 23.6 1.7E+02 0.0038 19.7 3.9 32 173-204 5-36 (55)
164 PF10226 DUF2216: Uncharacteri 23.5 1.5E+02 0.0033 25.1 4.4 30 176-205 42-71 (195)
165 COG1792 MreC Cell shape-determ 23.1 1.4E+02 0.003 26.5 4.5 25 182-206 83-107 (284)
166 PRK09926 putative chaperone pr 22.8 2.5E+02 0.0054 24.2 5.9 43 26-70 173-217 (246)
167 PRK05771 V-type ATP synthase s 22.7 1.3E+02 0.0027 29.7 4.5 32 175-206 93-124 (646)
168 PRK15192 fimbrial chaperone Bc 22.5 2.2E+02 0.0047 24.6 5.4 40 27-70 163-203 (234)
169 PF05529 Bap31: B-cell recepto 22.5 1.2E+02 0.0026 24.8 3.7 22 183-204 169-190 (192)
170 TIGR02894 DNA_bind_RsfA transc 22.5 1.9E+02 0.0041 23.8 4.7 31 177-207 99-129 (161)
171 PF11382 DUF3186: Protein of u 22.4 1E+02 0.0023 27.5 3.6 26 182-207 32-57 (308)
172 PF12808 Mto2_bdg: Micro-tubul 22.1 1.9E+02 0.0042 19.2 3.9 25 178-202 25-49 (52)
173 PRK10378 inactive ferrous ion 22.0 4.2E+02 0.0091 24.7 7.5 59 26-90 53-116 (375)
174 PLN02678 seryl-tRNA synthetase 22.0 2.1E+02 0.0046 27.2 5.7 33 175-207 71-103 (448)
175 PF15188 CCDC-167: Coiled-coil 21.9 86 0.0019 23.1 2.4 27 174-200 42-68 (85)
176 PF04111 APG6: Autophagy prote 21.8 1.6E+02 0.0034 26.5 4.6 6 187-192 55-60 (314)
177 PF07795 DUF1635: Protein of u 21.8 1.2E+02 0.0027 26.0 3.7 31 175-205 33-63 (214)
178 PRK09413 IS2 repressor TnpA; R 21.7 1.4E+02 0.003 22.6 3.7 22 182-203 78-99 (121)
179 PRK15246 fimbrial assembly cha 21.7 2.3E+02 0.0049 24.4 5.4 39 27-69 154-192 (233)
180 PF14077 WD40_alt: Alternative 21.3 1.2E+02 0.0027 19.8 2.7 24 179-202 15-38 (48)
181 PF11414 Suppressor_APC: Adeno 21.1 2E+02 0.0044 20.9 4.2 26 182-207 7-32 (84)
182 PTZ00454 26S protease regulato 21.1 2.2E+02 0.0048 26.4 5.6 35 173-207 27-61 (398)
183 PRK15295 fimbrial assembly cha 21.0 1.9E+02 0.0041 24.7 4.7 39 27-69 158-197 (226)
184 PF05600 DUF773: Protein of un 20.9 1.6E+02 0.0034 28.5 4.6 38 171-208 456-493 (507)
185 KOG2391 Vacuolar sorting prote 20.9 6E+02 0.013 23.6 8.0 59 7-70 33-100 (365)
186 PF00932 LTD: Lamin Tail Domai 20.8 1.4E+02 0.0031 21.9 3.5 42 26-69 26-70 (116)
187 PF06305 DUF1049: Protein of u 20.6 1.2E+02 0.0026 20.2 2.9 21 186-206 45-65 (68)
188 TIGR03752 conj_TIGR03752 integ 20.5 1.4E+02 0.003 28.7 4.1 25 179-203 70-94 (472)
189 PRK02119 hypothetical protein; 20.2 2.7E+02 0.0059 19.6 4.7 31 175-205 23-53 (73)
190 cd00890 Prefoldin Prefoldin is 20.1 1.9E+02 0.0042 21.5 4.2 34 174-207 93-126 (129)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.8e-29 Score=209.11 Aligned_cols=136 Identities=46% Similarity=0.718 Sum_probs=120.4
Q ss_pred CCCCCceEEeC-CeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCC
Q 028356 1 MSTGELLSIEP-LELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 1 m~~~~lL~i~P-~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~ 79 (210)
|+.+.+|.|+| .+|.|.+++.+++.+.|+|+|+++.++|||||||+|++|||||+.|+|.||++++|.|.+|++...|.
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~ 82 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP 82 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence 35678999999 58999999999999999999999999999999999999999999999999999999999999877789
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccC--CCeeeEEEeEEEEeCCCCCCCCCCCC
Q 028356 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA--GHVVEECKLRVIYVSPPQPPSPVPEG 138 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~--~~~v~e~KLrv~~~~p~~~~s~~~~~ 138 (210)
+++|+|||+||++.++.+ +..++ .++|.... +..+.+.+++|.|+.|+.+++....+
T Consensus 83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 141 (218)
T KOG0439|consen 83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKL 141 (218)
T ss_pred hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccccc
Confidence 999999999999999986 33344 36776655 78899999999999988877666544
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=3.7e-28 Score=202.77 Aligned_cols=118 Identities=36% Similarity=0.625 Sum_probs=107.4
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCC-CCCCCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP-PDMQCKD 85 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p-~~~~~kD 85 (210)
+.|+|. +.|..|+....++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 456664 56777999999999999999999999999999999999999999999999999999999998887 7999999
Q ss_pred eEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 86 KFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 86 KFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
|||||+...+...+-.|+ .++|....+.-+++.||||+|.
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvys 121 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYS 121 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEee
Confidence 999999999987777788 4899887777799999999998
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.91 E-value=9.4e-24 Score=159.24 Aligned_cols=103 Identities=40% Similarity=0.644 Sum_probs=82.1
Q ss_pred eEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCCCC
Q 028356 7 LSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKD 85 (210)
Q Consensus 7 L~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~kD 85 (210)
|.|+|. .|.|.+++++...+.|+|+|+++.+||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789998 79999999999999999999999999999999999999999999999999999999999997654433 2399
Q ss_pred eEEEEEEecCCCCC-ccchhHHhhcc
Q 028356 86 KFLLQSVKTNDGTT-AKDINAEMFNK 110 (210)
Q Consensus 86 KFlVqs~~~~~~~~-~~di~~~~f~k 110 (210)
||+|+++.++++.. .++....+|+.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~ 106 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKN 106 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHH
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhc
Confidence 99999999987653 32333456654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.64 E-value=6.9e-07 Score=66.51 Aligned_cols=70 Identities=23% Similarity=0.420 Sum_probs=61.4
Q ss_pred CceEEeCCeeeEecc-CCCeeeEEEEEEeCCCCeEEEEEeecC--CCcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 5 ELLSIEPLELKFPFE-LKKQISCSLQLSNKTDNYVAFKVKTTN--PKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~-~~k~~~~~l~L~N~s~~~VaFKVKTT~--P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
..|.++|.+|.|-.- .+......|+|+|.+..+..|+|+.-. ...|.|.|..|+|.||.+..+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 468999999999874 567788999999999999999997543 5689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.14 E-value=0.0074 Score=46.24 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=71.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC---C------CcEEEeCCCeeeCCCCEEEEEEEeccCccC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN---P------KKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~---P------~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~ 77 (210)
|.|.|..+.|... .....++|+|.++.++.+.+.... . ..|.|-|+.-.|.||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788999998863 347899999999999999987664 1 2699999999999999999999 5433 33
Q ss_pred CCCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 78 PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 78 p~~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
|.+. -..|.|....+|......+ .+..-.....+.++|.|.
T Consensus 77 ~~~~--E~~yrl~~~~iP~~~~~~~------~~~~v~i~~~~~i~v~~r 117 (122)
T PF00345_consen 77 PIDR--ESLYRLSFREIPPSEAENE------SKNGVQIALRYSIPVFYR 117 (122)
T ss_dssp -SSS---EEEEEEEEEEESCCTTSS------SSSEEEEEEEEEEEEEEE
T ss_pred CCCc--eEEEEEEEEEEeccccccc------ccceEEEEEEEEEEEEEC
Confidence 4432 2344554444444321000 011112355777887776
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.69 E-value=0.24 Score=46.22 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=52.8
Q ss_pred eeeEeccCCCeeeEEEE-EEeCCCCeEEEEEeecC------------CCcEEEeCCCeeeCCCCEEEEEEEeccCc
Q 028356 13 ELKFPFELKKQISCSLQ-LSNKTDNYVAFKVKTTN------------PKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 13 eL~F~~~~~k~~~~~l~-L~N~s~~~VaFKVKTT~------------P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~ 75 (210)
.|.|....+......|. |.|.+...|-|..+--. ...|......|+|.||++..|.|++++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68898877766666666 99999999999976433 45799999999999999999999999863
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.44 E-value=0.53 Score=40.46 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=68.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCC-----CcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNP-----KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P-----~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~ 81 (210)
|.+.|..+.|... .....++|.|.++.++......... .-|.|-|+.-.|+||+...|.|.+.. ..|.|.
T Consensus 26 v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~dr 100 (230)
T PRK09918 26 MVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLNT 100 (230)
T ss_pred EEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCCe
Confidence 6677888888863 4568999999999877666544221 35999999999999999999998874 245442
Q ss_pred CCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 82 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
---|.+....+|+.... +..=......++++-|.
T Consensus 101 --Es~f~l~v~~IP~~~~~---------~~~l~ia~r~~iklfyR 134 (230)
T PRK09918 101 --EHLLRVSFEGVPPKPGG---------KNKVVMPIRQDLPVLIQ 134 (230)
T ss_pred --eEEEEEEEEEcCCCCCC---------CCEEEEEEEeEEEEEEe
Confidence 22355555555542110 00012244567787776
No 8
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=93.85 E-value=2.9 Score=36.22 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=67.6
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec------------CCCcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT------------~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
|.+++..+.|+.. .....++|.|.++.+..-..... ...-|.|-|+.--|+|++...|.|.....
T Consensus 28 v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~ 104 (236)
T PRK11385 28 VVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTES 104 (236)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECCC
Confidence 5677778888863 45789999999998744333211 11349999999999999999999998753
Q ss_pred ccCCCCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 75 KEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 75 ~~~p~~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
..+|.|.. .-|-+....+|+....+ . .=......+|++-|.
T Consensus 105 ~~LP~DRE--Slf~lnv~~IPp~~~~~----n-----~L~iair~riKLFyR 145 (236)
T PRK11385 105 DILPVDRE--TLFELSIASVPSGKVEN----Q-----SVKVAMRSVFKLFWR 145 (236)
T ss_pred CCCCCCce--EEEEEEEEecCCCcCCC----c-----eEEEEEEeeEEEEEc
Confidence 24666532 34445555555421100 0 012245677787776
No 9
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=93.80 E-value=0.82 Score=39.72 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=60.7
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCC----------cEEEeCCCeeeCCCCEEEEEEEeccCc
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPK----------KYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~----------~Y~VrP~~GiI~P~~s~~V~Vtlq~~~ 75 (210)
-|.|.|..++|+.. .....|+|.|.++.++.-..-...-+ -|.|-|+.--|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 37788888998863 45789999999998876665443211 399999999999999999999987532
Q ss_pred cCCCCCCCCCeEEEEEEecCC
Q 028356 76 EAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 76 ~~p~~~~~kDKFlVqs~~~~~ 96 (210)
.+|.|.. --|-+....+|+
T Consensus 103 ~lP~DrE--Slf~lnv~eIP~ 121 (246)
T PRK09926 103 ALPKDRE--SVFWFNVLEVPP 121 (246)
T ss_pred CCCCCce--EEEEEEeeecCC
Confidence 3565422 224444444444
No 10
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=93.78 E-value=0.45 Score=30.47 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=35.5
Q ss_pred EEEEeCCCCeE-EEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEe
Q 028356 28 LQLSNKTDNYV-AFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 28 l~L~N~s~~~V-aFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtl 71 (210)
++++|.++.++ ..+|+| +=+-..+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 67999999777 556665 56788888889999999999999874
No 11
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=93.50 E-value=0.9 Score=39.66 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=58.6
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC------C-----CcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN------P-----KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~------P-----~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
-|.|.|..++|+.. .....|+|.|.++.++....-+.. | .-|.|-|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 37788888998854 356899999999887655543211 1 139999999999999999999998752
Q ss_pred ccCCCCCCCCCeEEEEEEecCC
Q 028356 75 KEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 75 ~~~p~~~~~kDKFlVqs~~~~~ 96 (210)
...|.|.. --|-+....+|+
T Consensus 106 ~~lP~DRE--Slf~lnv~eIP~ 125 (253)
T PRK15249 106 KKLPQDRE--SVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCce--EEEEEEeeecCC
Confidence 23555422 224444444444
No 12
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=93.35 E-value=2.4 Score=36.28 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=59.5
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC--------CCcEEEeCCCeeeCCCCEEEEEEEeccCccC
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN--------PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~--------P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~ 77 (210)
-|.|.|..+.|+.. .....|+|.|.++.++.-..-... ..-|.|-|+.-.|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 36788888888865 346899999998876555432211 1249999999999999999999987753 35
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 028356 78 PPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 78 p~~~~~kDKFlVqs~~~~~ 96 (210)
|.|.. .-|-+....+|+
T Consensus 99 P~DrE--slf~lnv~eIP~ 115 (227)
T PRK15299 99 PEDRE--SLYWLDIKSIPS 115 (227)
T ss_pred CCcce--EEEEEEeEecCC
Confidence 65522 335555555554
No 13
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.08 E-value=0.56 Score=35.65 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=36.0
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEE-eCCCee-eCCCCEEEEEEEeccC
Q 028356 25 SCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTGI-VLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 25 ~~~l~L~N~s~~~VaFKVKTT~P~~Y~V-rP~~Gi-I~P~~s~~V~Vtlq~~ 74 (210)
.+.|+|.|+++++..|.|+...+..+.+ .|...+ |.||++..+.|.+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 4799999999999999999998888888 775554 8999999999988764
No 14
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=93.04 E-value=2.7 Score=36.24 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec------CCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT------~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~ 80 (210)
|.+++..+.|+.. .....++|.|.++.++.-..... ...-|.|-|+.-.|+||+...|.|..... .+|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677778888863 35789999999988754333221 11249999999999999999999998753 45655
Q ss_pred CCCCCeEEEEEEecCC
Q 028356 81 MQCKDKFLLQSVKTND 96 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~ 96 (210)
.. .-|-+....+|+
T Consensus 100 RE--Slf~lnv~~IP~ 113 (229)
T PRK15211 100 RE--SLFWLNVQEIPP 113 (229)
T ss_pred ce--EEEEEEEEEcCC
Confidence 32 334444445554
No 15
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=93.00 E-value=2.8 Score=35.95 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=57.4
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC-------CCcEEEeCCCeeeCCCCEEEEEEEeccCccCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN-------PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~ 79 (210)
|.+.+..+.|+.. .....|+|.|.++.++.-..-... ..-|.|-|+.-.|+||+...|.|..... .+|.
T Consensus 21 i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP~ 96 (226)
T PRK15295 21 IVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLPA 96 (226)
T ss_pred EEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 6778888888864 346899999999876432221211 2259999999999999999999988753 3555
Q ss_pred CCCCCCeEEEEEEecCC
Q 028356 80 DMQCKDKFLLQSVKTND 96 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~ 96 (210)
|.. .-|-+....+|+
T Consensus 97 DrE--slf~lnv~~IP~ 111 (226)
T PRK15295 97 DRE--SMYWLNIKGIPS 111 (226)
T ss_pred Cce--EEEEEEEEEcCC
Confidence 422 235555555554
No 16
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=92.32 E-value=1.8 Score=37.41 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=58.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec------CCC----cEEEeCCCeeeCCCCEEEEEEEeccCcc
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NPK----KYCVRPNTGIVLPRSTCDIIVTMQAQKE 76 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT------~P~----~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~ 76 (210)
|.|.+..+.|+.. .....|+|.|.++.++.-..-.. .|. -|.|-|+.-.|+|++...|.|.......
T Consensus 12 v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~~ 88 (233)
T PRK15246 12 VNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQQ 88 (233)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCCC
Confidence 6788888898863 45689999999988654333111 111 4999999999999999999999875334
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 028356 77 APPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 77 ~p~~~~~kDKFlVqs~~~~~ 96 (210)
+|.|.. --|-+....+|+
T Consensus 89 LP~DRE--Slf~lnv~~IP~ 106 (233)
T PRK15246 89 LATDRE--SLFWLNIYQIPP 106 (233)
T ss_pred CCCCce--EEEEEEEEEcCC
Confidence 565422 235555555554
No 17
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=91.48 E-value=6.4 Score=34.26 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=68.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCC-CeEEEEEeec--C-C----CcEEEeCCCeeeCCCCEEEEEEEeccCccCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKTT--N-P----KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP 78 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~-~~VaFKVKTT--~-P----~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p 78 (210)
|.+++..+.|+.. .....++|.|.++ .++.-..-.. + . .-|.|-|+.--|+||+...|.|.......+|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6777788888863 4567999999986 4555544333 1 0 1499999999999999999999987532356
Q ss_pred CCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028356 79 PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 79 ~~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
.|.. .-|-+....+|+....++ .+ .=......+|++-|.+
T Consensus 116 ~DRE--Slf~lnv~eIPp~~~~~~--~n-----~L~iair~rIKlFyRP 155 (243)
T PRK15290 116 DDRE--SVFWLNIKNIPPSASNKA--TN-----SLEIAVKTRIKLFWRP 155 (243)
T ss_pred CCee--EEEEEEEEEcCCCCcccc--cc-----eEEEEEEEeeeEEEec
Confidence 6522 345555555554211000 00 0123456778888873
No 18
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=90.23 E-value=5.3 Score=34.58 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=57.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec----------C----CCcEEEeCCCeeeCCCCEEEEEEEec
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT----------N----PKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT----------~----P~~Y~VrP~~GiI~P~~s~~V~Vtlq 72 (210)
|.++...+.|+.. .....++|.|.++.+ |=|++. . ..-|.|-|+.--|+|++...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5677777888863 456899999999886 555541 1 11399999999999999999999987
Q ss_pred cCccCCCCCCCCCeEEEEEEecCC
Q 028356 73 AQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 73 ~~~~~p~~~~~kDKFlVqs~~~~~ 96 (210)
.. .+|.|.. --|-+....+|+
T Consensus 99 ~~-~LP~DRE--Slf~lnv~~IPp 119 (234)
T PRK15192 99 GA-PLPADRE--SLFTLSIAAIPS 119 (234)
T ss_pred CC-CCCCcce--EEEEEEEEecCC
Confidence 53 3565522 334455555554
No 19
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=89.43 E-value=5.6 Score=34.13 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=56.5
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCC--eEEEEEeec-CC---CcEEEeCCCeeeCCCCEEEEEEEeccCccCCC
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDN--YVAFKVKTT-NP---KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~--~VaFKVKTT-~P---~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~ 79 (210)
-|.+.|..+.|+.. .....|+|.|.++. ++.+..-.. .. .-|.|-|+.--|+|++...|.|..... .+|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888998864 34689999999863 343332222 11 239999999999999999999987643 3455
Q ss_pred CCCCCCeEEEEEEecCC
Q 028356 80 DMQCKDKFLLQSVKTND 96 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~ 96 (210)
|.. --|-+-...+|+
T Consensus 98 DrE--Slf~lnv~eIP~ 112 (228)
T PRK15208 98 DRE--SVYWINVKAIPA 112 (228)
T ss_pred Cee--EEEEEEEEEcCC
Confidence 422 224444444544
No 20
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.70 E-value=10 Score=32.73 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=64.2
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec-------CCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~ 79 (210)
+.|.+..+.|+.. .....|+|.|.++.++.-.+..- ....|.|-|+.-.|+||+...|.|...+. ..|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 5667778888865 34689999998889998886544 23459999999999999999999999986 4666
Q ss_pred CCCCCCeEEEEEEecCC
Q 028356 80 DMQCKDKFLLQSVKTND 96 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~ 96 (210)
| .-.-|-+..-.+|+
T Consensus 105 d--rEslf~lnv~eIPp 119 (235)
T COG3121 105 D--RESLFRLNVDEIPP 119 (235)
T ss_pred C--ceeEEEEEeeecCC
Confidence 5 33556666666655
No 21
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=87.44 E-value=7.8 Score=33.41 Aligned_cols=108 Identities=10% Similarity=0.235 Sum_probs=66.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC--eEEEEE-eecC---CCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN--YVAFKV-KTTN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~--~VaFKV-KTT~---P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~ 80 (210)
|.+.+..+.|+.. .....++|+|.+++ ++.... .... ..-|.|-|+.--|+||+...|.|..... ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6778888888863 44689999999864 332221 1111 1249999999999999999999998753 35655
Q ss_pred CCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 81 MQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
.. .-|-+....+|+.... +. .+..=......+|++-|.
T Consensus 105 RE--Slf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyR 142 (228)
T PRK15188 105 RE--SVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIR 142 (228)
T ss_pred ce--EEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEEC
Confidence 22 3344444555542110 00 000012245677887777
No 22
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=87.14 E-value=2.2 Score=32.07 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCeeeEEEEEEeCCCCeEEEEEeec-----C---CCcEE--Ee-----------CCCeeeCCCCEEEEEEEeccC
Q 028356 21 KKQISCSLQLSNKTDNYVAFKVKTT-----N---PKKYC--VR-----------PNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~VaFKVKTT-----~---P~~Y~--Vr-----------P~~GiI~P~~s~~V~Vtlq~~ 74 (210)
++..+..|+|+|.+++.+.|++.-. . ...|. +. |..=.|.||++.+|.|++.+.
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3446789999999999999998755 1 12222 11 122257889999999988864
No 23
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=87.07 E-value=6.9 Score=33.64 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=55.2
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC--eEEEEEeecC----CCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN--YVAFKVKTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~--~VaFKVKTT~----P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~ 80 (210)
|.|++..+.|+.. .....++|.|.++. +++..--.+. ..-|.|-|+.--|+||+...|.|..... .+|.|
T Consensus 27 i~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAAD 102 (229)
T ss_pred EEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6788888888854 23489999999864 4433211111 1359999999999999999999998753 34554
Q ss_pred CCCCCeEEEEEEecCC
Q 028356 81 MQCKDKFLLQSVKTND 96 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~ 96 (210)
.. .-|-+....+|+
T Consensus 103 rE--Slf~Lnv~eIP~ 116 (229)
T PRK15195 103 RE--SLFWMNVKAIPS 116 (229)
T ss_pred ee--EEEEEEeeecCC
Confidence 22 224444444444
No 24
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=86.08 E-value=1.2 Score=34.53 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
......+.|..|+.|++.|.++|.+|+.||
T Consensus 90 s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 90 SHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 334456689999999999999999999997
No 25
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=85.83 E-value=11 Score=32.68 Aligned_cols=85 Identities=9% Similarity=0.123 Sum_probs=55.5
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCC-CeEEEEEee--cC---CCcEEEeCCCeeeCCCCEEEEEEEecc--CccCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKT--TN---PKKYCVRPNTGIVLPRSTCDIIVTMQA--QKEAP 78 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~-~~VaFKVKT--T~---P~~Y~VrP~~GiI~P~~s~~V~Vtlq~--~~~~p 78 (210)
+.+++..+.|+.. .....++|.|.++ .++.-..-. .. ..-|.|-|+.--|+||+...|.|.... ...+|
T Consensus 18 v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~lP 94 (239)
T PRK15254 18 VNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP 94 (239)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCCC
Confidence 5677778888863 4568999999976 354333221 11 124999999999999999999998763 22455
Q ss_pred CCCCCCCeEEEEEEecCC
Q 028356 79 PDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 79 ~~~~~kDKFlVqs~~~~~ 96 (210)
.|.. .-|-+....+|+
T Consensus 95 ~DRE--Slf~lnv~~IP~ 110 (239)
T PRK15254 95 QDRE--TLFWFNVRGVPP 110 (239)
T ss_pred CCce--EEEEEEEEEcCC
Confidence 5422 334444444444
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.46 E-value=1.4 Score=31.97 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=23.6
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.+++++...+...+..+...|..|.++|++||+|.
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45555656666666666666777778888888764
No 27
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=83.44 E-value=25 Score=30.19 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=64.6
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee--cCC----------CcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT--TNP----------KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT--T~P----------~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
|.+.-+.+.|+.. ....+++|.|.++.+ |-|++ ... ..|.|-|+.-.|+|++...+.|.....
T Consensus 20 i~l~~TRvIy~~~---~~~~si~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~ 94 (226)
T PRK15218 20 IYIYGTRIIYPAQ---KKDITVQLMNDGKRS--SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN 94 (226)
T ss_pred EEeCceEEEEcCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC
Confidence 3444456777753 446789999999876 44433 111 149999999999999999999998753
Q ss_pred ccCCCCCCCCCeEEEEEEecCCCCCccchhHHhhcccC-CCeeeEEEeEEEEe
Q 028356 75 KEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEECKLRVIYV 126 (210)
Q Consensus 75 ~~~p~~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~-~~~v~e~KLrv~~~ 126 (210)
.+|.|. ---|-+....+|+..+..+ ... =......+|++-|.
T Consensus 95 -~LP~DR--ESlfwlnv~~IPp~~~~~~-------~~n~L~iairtrIKLfYR 137 (226)
T PRK15218 95 -NLPGDR--ESLFYLNVLDIPPNSDENK-------DKNIIKFALQNRIKLIYR 137 (226)
T ss_pred -CCCcce--eEEEEEEEEEcCCCCCCcC-------cCcEEEEEeeeEEEEEEc
Confidence 466552 2345555555665211000 000 12244677888787
No 28
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=82.18 E-value=3.5 Score=38.15 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=40.4
Q ss_pred CCCeeeEEEEEEeCCCCeEEEEEeec------CC-CcEEEeCCCe--------------eeCCCCEEEEEEEecc
Q 028356 20 LKKQISCSLQLSNKTDNYVAFKVKTT------NP-KKYCVRPNTG--------------IVLPRSTCDIIVTMQA 73 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~VaFKVKTT------~P-~~Y~VrP~~G--------------iI~P~~s~~V~Vtlq~ 73 (210)
.++..+-.++++|.++++|-.+==+| || ..|...|++. -|.||++.+|.|..|.
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 36778889999999999998874444 44 4444555443 2789999999999874
No 29
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=81.64 E-value=9.8 Score=27.71 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCeeeEEEEEEeCCCCeEE-EEEeecCCCcEEEe--CCCe-eeCCCCEEEEEEEeccC
Q 028356 21 KKQISCSLQLSNKTDNYVA-FKVKTTNPKKYCVR--PNTG-IVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~Va-FKVKTT~P~~Y~Vr--P~~G-iI~P~~s~~V~Vtlq~~ 74 (210)
.......+...|.+..+|- |.+.-..|+-+.++ |..| .|.||+.+...+.+...
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 3467788999999998884 88888888877766 5544 79999887777777653
No 30
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=81.19 E-value=30 Score=30.04 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=54.3
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee----cC---CCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCC
Q 028356 9 IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT----T~---P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~ 81 (210)
++-..+.|+.. .....|+|.|.++.+ |-|++ .. ..-|.|-|+.-.|+|++...|.|..... .+|.|.
T Consensus 32 l~~TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~DR 105 (237)
T PRK15224 32 LGATRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 105 (237)
T ss_pred eCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCCce
Confidence 33346777752 356899999998876 55554 11 1249999999999999999999998743 466552
Q ss_pred CCCCeEEEEEEecCC
Q 028356 82 QCKDKFLLQSVKTND 96 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~ 96 (210)
. --|-+....+|+
T Consensus 106 E--SlFwlnv~~IPp 118 (237)
T PRK15224 106 E--TLQWVCIKAVPP 118 (237)
T ss_pred e--EEEEEEEEEcCC
Confidence 2 334444455554
No 31
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=80.47 E-value=20 Score=31.35 Aligned_cols=80 Identities=13% Similarity=0.092 Sum_probs=53.3
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee----cC---CCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCC
Q 028356 9 IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT----T~---P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~ 81 (210)
++-..+.|+.. .....|+|.|.++.+ |-|++ .. ..-|.|-|+.-.|+|++...|.|..... .+|.|.
T Consensus 44 l~~TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DR 117 (246)
T PRK15233 44 LGTTRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNE 117 (246)
T ss_pred eCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCc
Confidence 33345666643 356899999988776 44443 11 1249999999999999999999998753 456552
Q ss_pred CCCCeEEEEEEecCC
Q 028356 82 QCKDKFLLQSVKTND 96 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~ 96 (210)
. --|-+....+|+
T Consensus 118 E--Slfwlnv~~IPp 130 (246)
T PRK15233 118 E--SLYWLCVKGVPP 130 (246)
T ss_pred e--EEEEEEEEEcCC
Confidence 2 235555555555
No 32
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=79.56 E-value=3.4 Score=28.98 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCeeeEEEEEEeCCCCeE-EEEEeecCCCcEE--EeCCC-eeeCCCCEEEEEEEeccCccC
Q 028356 21 KKQISCSLQLSNKTDNYV-AFKVKTTNPKKYC--VRPNT-GIVLPRSTCDIIVTMQAQKEA 77 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~--VrP~~-GiI~P~~s~~V~Vtlq~~~~~ 77 (210)
+......++++|.+..++ ..++.-..|.-+. +.|.. +-|.||++..+.+.+.+...+
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 345678899999987553 3555555688777 55553 479999999999999875433
No 33
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=78.90 E-value=41 Score=29.36 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=51.5
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEE--EeecCCC----cEEEeCCCeeeCCCCEEEEEEEecc-CccCCCC
Q 028356 9 IEPLELKFPFELKKQISCSLQLSNKTDN-YVAFK--VKTTNPK----KYCVRPNTGIVLPRSTCDIIVTMQA-QKEAPPD 80 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFK--VKTT~P~----~Y~VrP~~GiI~P~~s~~V~Vtlq~-~~~~p~~ 80 (210)
++-+.+.|+.. .....++|.|.++. ++.-. |...... -|.|-|+.-.|+||+...|.|...+ ...+|.|
T Consensus 29 l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 33346777753 45689999999865 43322 2211211 3999999999999999999999764 2335554
Q ss_pred CCCCCeEEEEEEecCC
Q 028356 81 MQCKDKFLLQSVKTND 96 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~ 96 (210)
.. -=|-+....+|+
T Consensus 106 RE--Slfwlnv~~IPp 119 (250)
T PRK15285 106 RE--TLFYYNVREIPP 119 (250)
T ss_pred ce--EEEEEEEEEcCC
Confidence 22 234444444444
No 34
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.86 E-value=3.7 Score=29.26 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=21.0
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.+++++...+...++.+..-|.+|.++|++|++|
T Consensus 28 eELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 28 EELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555556666666666666667666665
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.31 E-value=6.1 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
..++...-..|.+|+..|.++|++|++|-
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555666666653
No 36
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=78.11 E-value=47 Score=29.16 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=52.3
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEEE--eecC----CCcEEEeCCCeeeCCCCEEEEEEEecc-CccCCCC
Q 028356 9 IEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKV--KTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQA-QKEAPPD 80 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFKV--KTT~----P~~Y~VrP~~GiI~P~~s~~V~Vtlq~-~~~~p~~ 80 (210)
++-+.+.|+.. .....|+|.|.++. ++.-.. -... ..-|.|-|+.--|+|++...|.|...+ ...+|.|
T Consensus 30 l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D 106 (257)
T PRK15274 30 PDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD 106 (257)
T ss_pred eCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc
Confidence 33346777753 44689999999865 433222 1111 124999999999999999999999775 2345554
Q ss_pred CCCCCeEEEEEEecCC
Q 028356 81 MQCKDKFLLQSVKTND 96 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~ 96 (210)
.. --|-+....+|+
T Consensus 107 RE--SlFwlNv~eIPp 120 (257)
T PRK15274 107 RE--SLFYFNVREIPP 120 (257)
T ss_pred ee--EEEEEEEEEcCC
Confidence 22 234444444454
No 37
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=77.31 E-value=48 Score=28.79 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=53.9
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee--cC------C----CcEEEeCCCeeeCCCCEEEEEEEeccCc
Q 028356 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT--TN------P----KKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 8 ~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT--T~------P----~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~ 75 (210)
.++-+.+.|+.. ....+++|.|.++.+ |-|++ .. | .-|.|-|+.-.|+|++...|.|.....
T Consensus 36 ~l~~TRvIy~~~---~k~~sv~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~- 109 (242)
T PRK15253 36 VIYGTRVIYPAE---KKEVVVQLVNQGEQA--SLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN- 109 (242)
T ss_pred EeCceEEEEeCC---CceEEEEEEcCCCCc--EEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-
Confidence 334446777753 356789999999876 44443 11 1 249999999999999999999987653
Q ss_pred cCCCCCCCCCeEEEEEEecCC
Q 028356 76 EAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 76 ~~p~~~~~kDKFlVqs~~~~~ 96 (210)
.+|.|. --=|-+....+|+
T Consensus 110 ~LP~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 110 SLPDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred CCCcce--eEEEEEEEEEcCC
Confidence 466552 2334445555554
No 38
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.91 E-value=7.4 Score=26.39 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+|+...+.++.-..+.++.||+.|+.+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777777777777665
No 39
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.86 E-value=7.2 Score=26.98 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+..+.+.+..|+.+...+.++|.+|++|+..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777654
No 40
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.62 E-value=7.3 Score=25.17 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.-+.+....|..+-++|.++|+.|+.|+.
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666554
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.89 E-value=7.5 Score=27.64 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=23.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.+..++..|...|..|+.|...|.++|..|.+|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e 40 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEE 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455677788888888888888887775555443
No 42
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=72.89 E-value=15 Score=26.42 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=30.9
Q ss_pred eeEEEEEEeCCCCeEEEEEee-----cCCCcEEEeCCCeeeCCCCEEEEEEEe
Q 028356 24 ISCSLQLSNKTDNYVAFKVKT-----TNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKT-----T~P~~Y~VrP~~GiI~P~~s~~V~Vtl 71 (210)
..-.|+|.|.+...+.|.|.. ..|..|. |.||++..+.+-+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~-------v~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYT-------VAAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEE-------ECCCCEEEEEEee
Confidence 367899999999999999997 3344454 4557777777766
No 43
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=72.45 E-value=17 Score=26.78 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=39.4
Q ss_pred CCCeeeEEEEEEeCCCCe--------EEEEEeecCCC--cEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 20 LKKQISCSLQLSNKTDNY--------VAFKVKTTNPK--KYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~--------VaFKVKTT~P~--~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
.++.....++++|+++.+ .++-|-=|.-. ....+-..+-|.||++..+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 577889999999999877 55555544332 25677889999999999999999875
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.47 E-value=15 Score=28.04 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=24.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+-..+.++...+..|.+|-..|+-+|..||+-|.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777777778877777654
No 45
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=68.90 E-value=20 Score=26.66 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=36.0
Q ss_pred CCeeeEEEEEEeCCCCeEE-EEEeecCCCc--EEEeCC-CeeeCCCCEEEEEEEecc
Q 028356 21 KKQISCSLQLSNKTDNYVA-FKVKTTNPKK--YCVRPN-TGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~Va-FKVKTT~P~~--Y~VrP~-~GiI~P~~s~~V~Vtlq~ 73 (210)
.....-.+...|++..++- |.+.-..|+. ..+.|. ...|.|+..+.-.+.+..
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 5567789999999998875 7777666664 555566 459999988877666655
No 46
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.82 E-value=12 Score=28.40 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.++.+.+..++.|...+.++|..|+.|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666654
No 47
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=67.62 E-value=12 Score=24.68 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
....++...+..|+.|...|.+++..|++|
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566667777777777777777777765
No 48
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.89 E-value=11 Score=26.98 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=27.4
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+..+...+...|.-|.-|...|.+.|+.|++|.-
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 34456778888888888888888888888887753
No 49
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=66.34 E-value=30 Score=32.12 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=40.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcE----------------------EEeCCCeeeCCCCE
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGIVLPRST 64 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y----------------------~VrP~~GiI~P~~s 64 (210)
+.++-..-.|.- .++...-.|+++|+++++|-..==+|+.-+| .|.|+ +-|.||++
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 444444455664 4788899999999999999887544444333 23333 46899999
Q ss_pred EEEEEEecc
Q 028356 65 CDIIVTMQA 73 (210)
Q Consensus 65 ~~V~Vtlq~ 73 (210)
.+|.|+++.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999874
No 50
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.38 E-value=8.5 Score=33.09 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=32.5
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTG 208 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
...+++...+.++...+..|-+.|.+++++||.+++.|
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 34556777788899999999999999999999999876
No 51
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=65.18 E-value=21 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=25.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+-..+.++.+.+..|-||-..|.-+|..||.-|.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888888888887765
No 52
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=64.54 E-value=37 Score=25.08 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=33.2
Q ss_pred CeeeEEEEEEeCCCCeEE-----EEEeecCCCcEEEeC---------CCeeeCCCCEEEEEEEecc
Q 028356 22 KQISCSLQLSNKTDNYVA-----FKVKTTNPKKYCVRP---------NTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~Va-----FKVKTT~P~~Y~VrP---------~~GiI~P~~s~~V~Vtlq~ 73 (210)
+-+.-.++|+|.++.++. |++.+.+-..|.... ..+-|.||.++...|.+.-
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 446679999999998876 788877767777554 3478999999999888864
No 53
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.01 E-value=15 Score=28.09 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=29.4
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+..++.++.+.+..|......+.++|..|+-|..
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888999999999999999999998864
No 54
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=63.87 E-value=56 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=23.2
Q ss_pred EeccCCCeeeEEEEEEeCCCCeEEEEEe
Q 028356 16 FPFELKKQISCSLQLSNKTDNYVAFKVK 43 (210)
Q Consensus 16 F~~~~~k~~~~~l~L~N~s~~~VaFKVK 43 (210)
+....+....-.|+|+|.+++.+-|+|.
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 3345667788899999999999999986
No 55
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.59 E-value=16 Score=26.59 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=30.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+..+...|...|.-|.-|...+.++|..|.+|..
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999999854
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.54 E-value=12 Score=31.90 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=20.4
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+++.++.+....++.|.+|...|.+|+..+|.|++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666553
No 57
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=61.87 E-value=7.2 Score=26.51 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=26.4
Q ss_pred EEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCEEEEEEE
Q 028356 28 LQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 28 l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~Vt 70 (210)
|++.|+|..+|.|- ++....++=..-...++|.|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 68999999999886 44443333222344449999998886654
No 58
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=61.00 E-value=61 Score=30.65 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=45.3
Q ss_pred eeeEEEEEEeCCCCeEEEEEeecCCCcEEEe-C-CCeeeCCCCEEEEEEEeccCccCCCCCCCCCeEEEEEE
Q 028356 23 QISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-P-NTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 92 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr-P-~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~kDKFlVqs~ 92 (210)
.-...++|.|++.++..|.++........+. + +.=.|.||+..++.|++........ ..++.|.+...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v~ 416 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRAY 416 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEEE
Confidence 3458999999999988888887755544443 2 2448999999998888775422211 23455555443
No 59
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=59.94 E-value=53 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=13.2
Q ss_pred eeEEEEEEeCCCCeEEEEEeec
Q 028356 24 ISCSLQLSNKTDNYVAFKVKTT 45 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT 45 (210)
+.-.|+|+|.++++|-+...|-
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sg 23 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSG 23 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS
T ss_pred EEEEEEEEeCCCCeEEEEeCCC
Confidence 3456777887777777766543
No 60
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=59.79 E-value=22 Score=25.08 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
........+.+++.+...+..+|.+|+.|...
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888653
No 61
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.44 E-value=28 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+..+-+...|..|.+..+.+..||.-||+-
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677888888988888888899888873
No 62
>smart00340 HALZ homeobox associated leucin zipper.
Probab=59.27 E-value=20 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028356 186 KLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el 205 (210)
-|..--++|.++|++||.|+
T Consensus 9 ~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666555
No 63
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=58.30 E-value=23 Score=24.20 Aligned_cols=31 Identities=29% Similarity=0.244 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
++|-++...-.+|-.|..+|.+||..||.=|
T Consensus 26 ~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 26 KRYNKVLLDRAALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788889999999999999998654
No 64
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.56 E-value=19 Score=31.76 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=30.8
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..+.+..|....+..|+.|.+.|+.++.+|++||..
T Consensus 212 ~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 212 KRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788889999999999999999999999863
No 65
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=56.00 E-value=33 Score=25.30 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=35.8
Q ss_pred CeeeEEEEEEeCCCCeE-EEEEeecCC-----------------CcEEEeCC--CeeeCCCCEEEEEEEecc
Q 028356 22 KQISCSLQLSNKTDNYV-AFKVKTTNP-----------------KKYCVRPN--TGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~V-aFKVKTT~P-----------------~~Y~VrP~--~GiI~P~~s~~V~Vtlq~ 73 (210)
......|+|+|.++.+| .++|.=+-| ..|.|+|. .+.|.||+++.+-+....
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 34556899999888775 355443333 46888876 479999999887666544
No 66
>smart00338 BRLZ basic region leucin zipper.
Probab=55.20 E-value=25 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++...+..|+.|...|..++..|++|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 67
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=54.67 E-value=1.4e+02 Score=25.81 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=59.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee---cCC---------------CcEEEeCCCeeeCCCCEEEEE
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT---TNP---------------KKYCVRPNTGIVLPRSTCDII 68 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT---T~P---------------~~Y~VrP~~GiI~P~~s~~V~ 68 (210)
|.|.|-.+.+... .+....++|+|.++.+..++|+. ++| ..-.+-|..-+|.||++-.|.
T Consensus 18 l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IR 95 (234)
T PRK15308 18 MLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVR 95 (234)
T ss_pred EEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEE
Confidence 6788877776532 24568999999999888777642 232 236788999999999999999
Q ss_pred EEeccCccCCCCCCCCCeEEEEEEecCCC
Q 028356 69 VTMQAQKEAPPDMQCKDKFLLQSVKTNDG 97 (210)
Q Consensus 69 Vtlq~~~~~p~~~~~kDKFlVqs~~~~~~ 97 (210)
|..... + + .-.-|.|...++++.
T Consensus 96 li~lg~---~-~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 96 VISLQA---P-E--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEcCC---C-C--cEEEEEEEEEecCCc
Confidence 886652 2 2 235677777777753
No 68
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=53.39 E-value=78 Score=23.09 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=33.0
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEe
Q 028356 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 8 ~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtl 71 (210)
.++|+++..+. + ....|.++|.+.....|-+.. +.+ ...|.||++..+.++-
T Consensus 31 ~f~P~~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKA--G--QPVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEET--T--CEEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcC--C--CeEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcC
Confidence 57788777654 2 335699999998888887776 111 2679999999988853
No 69
>smart00637 CBD_II CBD_II domain.
Probab=53.34 E-value=81 Score=22.54 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=30.7
Q ss_pred eeEEEEEEeCCCCeE-----EEEEee-------------cCCCcEEEeCC--CeeeCCCCEEEEEEEe
Q 028356 24 ISCSLQLSNKTDNYV-----AFKVKT-------------TNPKKYCVRPN--TGIVLPRSTCDIIVTM 71 (210)
Q Consensus 24 ~~~~l~L~N~s~~~V-----aFKVKT-------------T~P~~Y~VrP~--~GiI~P~~s~~V~Vtl 71 (210)
....|+|+|.++.++ .|.+-- .....|.++|. .+.|.||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 456788888766543 333211 02336999875 4899999988876655
No 70
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=53.09 E-value=27 Score=25.39 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.0
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 169 ~~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+..+++..+..+...|....+|-+.|..+|+-||+=
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888888888888763
No 71
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.88 E-value=33 Score=30.90 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=30.1
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 170 ~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..+..++|.+|+-.-..|-.|+.++.-|+.-|+.+|+
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le 122 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE 122 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888887765
No 72
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.15 E-value=34 Score=22.06 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=29.8
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.++..++.+.+.-..|..|...|+.+...|+..|.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56777888889999999999999999999887653
No 73
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=51.81 E-value=20 Score=29.44 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=26.1
Q ss_pred EEEeecCCCcEEEeCCCee--eCCCCEEEEEEEecc
Q 028356 40 FKVKTTNPKKYCVRPNTGI--VLPRSTCDIIVTMQA 73 (210)
Q Consensus 40 FKVKTT~P~~Y~VrP~~Gi--I~P~~s~~V~Vtlq~ 73 (210)
|+|.-=+-..|++.|.-|+ |.||++..|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7777778889999999997 899999999998655
No 74
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=51.69 E-value=37 Score=24.69 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+..+...+++++.|...+.++|.+|+-|..+
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667899999999999999999988654
No 75
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=49.57 E-value=34 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 181 RALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
...|..|..+.+.+.++|.+|+.+|+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999888765
No 76
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.30 E-value=1e+02 Score=25.52 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCeeeEEEEEEeCCCCeEEEEEeecC----CCcEEEeC-----CCeeeCCCCEEEEEEEeccC
Q 028356 20 LKKQISCSLQLSNKTDNYVAFKVKTTN----PKKYCVRP-----NTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~VaFKVKTT~----P~~Y~VrP-----~~GiI~P~~s~~V~Vtlq~~ 74 (210)
.++.+...++|+|.++. -||.|+=+. +..|-+.- ....|+||+++.-.+++.|.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 36778999999999887 799999877 23444321 13567777777776666653
No 77
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.99 E-value=30 Score=33.12 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.+.-+.+.+..++.|...+..+|++|++|.+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555443
No 78
>smart00338 BRLZ basic region leucin zipper.
Probab=48.56 E-value=52 Score=22.18 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=22.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
++......+.+....|..+...+..++..|++++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666667777777777777777776665
No 79
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.07 E-value=40 Score=22.70 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
..++...+..|+.|...|..++..|++++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 80
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=47.91 E-value=42 Score=29.75 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=19.0
Q ss_pred ccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Q 028356 174 QDKSTEARALISKLKDEK----NNAVQQNNKLRQDLW 206 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~----~~~~~~~~~L~~el~ 206 (210)
.+...++++++..|..+. ..+.+||++||+.|.
T Consensus 72 ~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 72 EYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444555444443332 237889999998765
No 81
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.83 E-value=40 Score=25.91 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=26.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+......+.+.+..|......++++|..|+-|..
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778888888888888889998888753
No 82
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.43 E-value=59 Score=21.87 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=24.3
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
..+.....++......|..+...|.+++..|+.|+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666777777777777777777777777664
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=45.61 E-value=52 Score=25.29 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++++......|..|...|.++|..|+++|.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555543
No 84
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=44.18 E-value=58 Score=28.23 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred hcccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKN---NAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~---~~~~~~~~L~~el~ 206 (210)
.+.+...++.+++..|+.+.. .+.+||++||+-|.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555556666655555 55667777777553
No 85
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=43.95 E-value=61 Score=21.17 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.-...+..|..+...|..+|..|++++..
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999998753
No 86
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.51 E-value=64 Score=21.91 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
...++...|..|..+.+.++.+.+..++|..|
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777655
No 87
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=42.18 E-value=1.9e+02 Score=25.53 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
..+.|+...|..|+||-..|.-+|+.||..
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776666666666543
No 88
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=41.33 E-value=55 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..+.+.+..+..||..+++.|..-++-++
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666555555554443
No 89
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=39.91 E-value=34 Score=24.33 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.+-+...|.+|..||+.++++..+||
T Consensus 45 ~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 45 HDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred HhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 34456689999999999998887764
No 90
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=39.10 E-value=1.7e+02 Score=23.57 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=34.0
Q ss_pred eeeEEEEEEeCCCCeE-EEEEeecC---CCcEEEeCCCeeeCCCCEEEEEEEe
Q 028356 23 QISCSLQLSNKTDNYV-AFKVKTTN---PKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~V-aFKVKTT~---P~~Y~VrP~~GiI~P~~s~~V~Vtl 71 (210)
-+.-.|+++|.++..+ --+|.... .-+-.--|..+.|.||+++.+.+-.
T Consensus 86 mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 86 MVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred cEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 3556899999999766 34454444 2234445889999999998876654
No 91
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=38.94 E-value=53 Score=23.68 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028356 185 SKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 185 ~~l~~E~~~~~~~~~~L~~el 205 (210)
..|++|...|.+++++|..||
T Consensus 3 ~ei~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.37 E-value=40 Score=33.97 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLWTGL 209 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
..+.+...+..++.||+.|+.|.+.|+.||...|
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l 443 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKKELAAAL 443 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 5667788999999999999999999999987654
No 93
>smart00340 HALZ homeobox associated leucin zipper.
Probab=37.42 E-value=75 Score=20.43 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
=+..-+..|++|-..|..+.+.||-
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456889999999999999999884
No 94
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=37.39 E-value=1.4e+02 Score=20.75 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=34.8
Q ss_pred CCCeeeEEEEEEeCCCCe-EEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 20 LKKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~-VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
.+....-.++|+|.+... =.|+|+-...+...-.-..+-|.||++..+.+++.+.
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 356788899999997743 4577764433333333334788999999998888864
No 95
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.24 E-value=44 Score=30.11 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 183 LISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+.+|.+|+..|.+|.++|+.+|+
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999995
No 96
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.63 E-value=83 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=32.1
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++.+++|.++...|+.++.|.+.+.+++.+.++|++.
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788888889999999999999999999999864
No 97
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=35.42 E-value=1.1e+02 Score=23.74 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
...+.+.+..|-+|-..|+=+|.+||+-|
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 33445555555666666666666666544
No 98
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=34.96 E-value=89 Score=23.23 Aligned_cols=30 Identities=33% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.++.+.|-.|-+++..|+++++.|++.|-+
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999997754
No 99
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.75 E-value=92 Score=24.82 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++.+.=..|..|.+.|.++|..++.|++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444554443
No 100
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=33.94 E-value=59 Score=28.55 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
..+|.+.|+.|+.|...|+.|+.++
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999874
No 101
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=33.48 E-value=55 Score=29.74 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=28.0
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 170 ~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++++++++..+..-+++-|++.+....+..+++||+++
T Consensus 289 lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 289 LSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777788888888888899998875
No 102
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.41 E-value=1.1e+02 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 183 LISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+=..|+.++..|.+|..+|++|+.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s 98 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENS 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666654
No 103
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.07 E-value=66 Score=28.14 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=24.1
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+++..+.++...+..+.+|+..|+.++..|+-|++.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee 167 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEE 167 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777777777777777777666543
No 104
>PRK09039 hypothetical protein; Validated
Probab=32.95 E-value=65 Score=29.34 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=29.3
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+.+..++++...|..|..|..+|+.|+..|+.+|+
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888889999999999998888888775
No 105
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.93 E-value=1.3e+02 Score=21.02 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=22.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+..+.+.+...+..|..|-..|+++...++.|
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777776665
No 106
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=32.53 E-value=82 Score=25.94 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=43.4
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCCCCeEEEEEEecCC
Q 028356 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~kDKFlVqs~~~~~ 96 (210)
.....-|.|.|+.++-|-.-+...+.|.+| +.|.|+|+..+-|.-.-... + ..-.+..||.+.-..
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e--L----N~~~~v~vQ~iAyK~ 83 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE--L----NDLERVAVQLIAYKK 83 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG--G----GG-SSEEEEEEEE-S
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH--h----hccceeEEEEEEEcC
Confidence 346778899999999999999888899998 68999999888775442221 1 123455566555443
No 107
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=32.41 E-value=1.7e+02 Score=20.28 Aligned_cols=58 Identities=7% Similarity=0.077 Sum_probs=37.6
Q ss_pred CeeeEeccCCCeeeEEEEEEeCCC--CeEEEEEeec---CCCcEEEeCCCeeeCCCCEEEEEEE
Q 028356 12 LELKFPFELKKQISCSLQLSNKTD--NYVAFKVKTT---NPKKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 12 ~eL~F~~~~~k~~~~~l~L~N~s~--~~VaFKVKTT---~P~~Y~VrP~~GiI~P~~s~~V~Vt 70 (210)
-.+.+...........|.|.|-.. ......|.+. ..+.|.+.++.+ |.++....|.|.
T Consensus 15 ~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 15 ITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIV 77 (93)
T ss_pred EEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEE
Confidence 367777654456778999998766 2233444422 237888888776 555667777777
No 108
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=32.25 E-value=98 Score=22.17 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=24.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.-...++ +.+..|.++...+.+++..||+.|-+
T Consensus 58 g~~l~~i-~~~l~l~~~~~~l~~~l~~l~~~~~~ 90 (91)
T cd04766 58 GVNLAGV-KRILELEEELAELRAELDELRARLRR 90 (91)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444 45556999999999999999998754
No 109
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.11 E-value=66 Score=22.54 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028356 188 KDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 188 ~~E~~~~~~~~~~L~~el~ 206 (210)
-.|.+.|.+++..|++||+
T Consensus 46 ~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 46 YEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 110
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=31.25 E-value=95 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+....-.+.+.|+.|..-..+++++|..||=|.+
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe 46 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENE 46 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHH
Confidence 3455667888999999999999999999998764
No 111
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.15 E-value=78 Score=24.15 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=15.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++....+...+.+|..+.....++...|++|
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555555555555
No 112
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.82 E-value=1.4e+02 Score=20.92 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.....+...+.+|.+|...+.+++..++
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666677777777766665554
No 113
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=30.56 E-value=98 Score=29.67 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+..+|..+.+.+|+.|...+.+.|++-+..|.+
T Consensus 401 dddDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~ 433 (516)
T KOG4191|consen 401 DDDDEVLAELRKLQAELKAVSAHNRKKKHDLLR 433 (516)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 457899999999999999999999998877765
No 114
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.54 E-value=1.4e+02 Score=20.21 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++++...|+.|....+.|.++...||.+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444444
No 115
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=30.38 E-value=73 Score=22.79 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.++.+.|..|-++...|.++++.||+
T Consensus 59 ~~gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 59 LEGIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 47788999999999999999999874
No 116
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=30.34 E-value=74 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028356 186 KLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+-.|||.|..+.-.||+||.
T Consensus 7 ~VL~ERNeLK~~v~~leEEL~ 27 (60)
T PF11461_consen 7 EVLQERNELKARVFLLEEELA 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666666666664
No 117
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.21 E-value=2.3e+02 Score=22.06 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=30.3
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTG 208 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
|-.++++++...-..|.+=-+.-.+.-.+|+++.+|.
T Consensus 54 ER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWk 90 (116)
T KOG0860|consen 54 ERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWK 90 (116)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888899999999884
No 118
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=30.18 E-value=1.7e+02 Score=21.25 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=32.6
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCC--CeEEEEEeecCCCcEEEeC----CCeeeCCCCEEEEEEE
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTD--NYVAFKVKTTNPKKYCVRP----NTGIVLPRSTCDIIVT 70 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~--~~VaFKVKTT~P~~Y~VrP----~~GiI~P~~s~~V~Vt 70 (210)
-+.+.|+.|++..- ..++++|.+. +.+.|-=.......-...+ +.+.+.||++..++++
T Consensus 11 ~~~F~P~~i~v~~G------~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~ 75 (99)
T TIGR02656 11 ALVFEPAKISIAAG------DTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFS 75 (99)
T ss_pred ceeEeCCEEEECCC------CEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeC
Confidence 36889998887743 2367888754 4445421111111000111 3457889999888655
No 119
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.98 E-value=64 Score=29.73 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=8.8
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKN 192 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~ 192 (210)
++....++...+.+|++|+.
T Consensus 44 LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 44 LKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444433
No 120
>PF13205 Big_5: Bacterial Ig-like domain
Probab=29.91 E-value=2e+02 Score=20.33 Aligned_cols=56 Identities=13% Similarity=0.295 Sum_probs=35.6
Q ss_pred eeeEeccCCC-eeeEEEEEEe--CCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEe
Q 028356 13 ELKFPFELKK-QISCSLQLSN--KTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 13 eL~F~~~~~k-~~~~~l~L~N--~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtl 71 (210)
.|.|..+.+. .....+.+.+ ....+|.+. ....+.+.+.|. +-+.||..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 4667766543 3344556644 334555555 444488889998 567888999988853
No 121
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=29.91 E-value=1.2e+02 Score=26.32 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=28.9
Q ss_pred EEEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCEEEEEE
Q 028356 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~V 69 (210)
.|+++|+|..++.|- ++....+ -.+....|+|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 499999999999876 3322122 12223458999999998875
No 122
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=29.83 E-value=50 Score=22.67 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028356 190 EKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 190 E~~~~~~~~~~L~~el~~ 207 (210)
+...+.+|+..||+||.+
T Consensus 3 ~~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER 20 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 455666777777777754
No 123
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=29.80 E-value=75 Score=24.43 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 028356 185 SKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 185 ~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..|+++.+.|.+|..+|+.++.+
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 86 DELTERVDALERQVADLENKLKR 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788899999999999998864
No 124
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=29.38 E-value=89 Score=19.80 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
-+.|.+..++++.+|+-.+ ++|||.+
T Consensus 12 IL~EvrkEl~K~K~EIIeA------~~~eL~r 37 (40)
T PF08776_consen 12 ILEEVRKELQKVKEEIIEA------IRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHhc
Confidence 4456666777776666544 5555544
No 125
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.30 E-value=1.1e+02 Score=26.32 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=32.0
Q ss_pred EEEEEEeCCCCeEEEE--EeecCCCcEEEeCCCeeeCCCCEEEEEEE
Q 028356 26 CSLQLSNKTDNYVAFK--VKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFK--VKTT~P~~Y~VrP~~GiI~P~~s~~V~Vt 70 (210)
..|++.|+|..+|.|- .-+. .++-.. -+.+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999987 3333 333333 78899999998885554
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.98 E-value=92 Score=26.44 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=16.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++....++.+.+..+..|.+.+..+|..++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555543
No 127
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.97 E-value=2.9e+02 Score=24.06 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=20.1
Q ss_pred HHHHHhhhh-hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 161 AAAARAFTE-RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.++..-|.. ..++++........+..|+.|.+.|...|.+|-
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444442 234444444445555555555555555555553
No 128
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=28.04 E-value=84 Score=27.69 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=23.9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 170 ~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+...+..-+.-.+-..+++.|...|.++|++||-|-+
T Consensus 78 RVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 78 RVAAQTARDRKKARMEEMEYEIKDLTEENEILQNEND 114 (292)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433344455667778888888888888887654
No 129
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.97 E-value=1.4e+02 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.-.+|..|..+...+.++|..|++++.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~ 49 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIE 49 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666655543
No 130
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=27.85 E-value=2.5e+02 Score=21.68 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=31.0
Q ss_pred CeeeEEEEEEeCCCCeEEE---EEe------------ecCCCcEEEeC--CCeeeCCCCEEEEEEEecc
Q 028356 22 KQISCSLQLSNKTDNYVAF---KVK------------TTNPKKYCVRP--NTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~VaF---KVK------------TT~P~~Y~VrP--~~GiI~P~~s~~V~Vtlq~ 73 (210)
....-..+|.|.++.+++| ++. +-.|..|...+ +..-|.||++..+.+.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 3444566667766655544 222 12345554443 3445999999999998874
No 131
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=27.57 E-value=76 Score=20.42 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+-+...|..|+.+...|+.+|-.||.+..
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34456778888888888888888887754
No 132
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.47 E-value=1.2e+02 Score=21.79 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=29.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+++....+.+.|.+|.+++..+..+...++.+|..
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888999999999999999999888754
No 133
>PF14802 TMEM192: TMEM192 family
Probab=27.28 E-value=1.8e+02 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 180 ARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.+.+.+..+=...|+++|.+|++++..
T Consensus 207 ~eellEkQadlI~yLk~hn~~L~~ril~ 234 (236)
T PF14802_consen 207 LEELLEKQADLIRYLKEHNARLSRRILA 234 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777788889999999998864
No 134
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.78 E-value=2.3e+02 Score=22.01 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028356 183 LISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L 201 (210)
.+.+|+.+|+.|.++.-+|
T Consensus 38 el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 135
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.62 E-value=2.4e+02 Score=20.69 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+...++.+.+..|.++...+-.+...+..++..
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666543
No 136
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=26.59 E-value=78 Score=26.49 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEec
Q 028356 36 NYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 36 ~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq 72 (210)
++|+||+ |.+.-|.||+++++.+..-
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEE
Confidence 6777776 8899999999999988753
No 137
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=26.38 E-value=43 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=15.0
Q ss_pred EEEEeecCCC--cEEEeCCCeeeC
Q 028356 39 AFKVKTTNPK--KYCVRPNTGIVL 60 (210)
Q Consensus 39 aFKVKTT~P~--~Y~VrP~~GiI~ 60 (210)
+||+|+.+-+ ||.+.|+.|+-.
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6899976555 566667777643
No 138
>smart00605 CW CW domain.
Probab=26.37 E-value=82 Score=22.69 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=14.2
Q ss_pred EEEEEeC-CCCeEEEEEeecCCC
Q 028356 27 SLQLSNK-TDNYVAFKVKTTNPK 48 (210)
Q Consensus 27 ~l~L~N~-s~~~VaFKVKTT~P~ 48 (210)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3444444 458899999866554
No 139
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=26.32 E-value=98 Score=20.68 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=12.0
Q ss_pred eeEEEEEEeCCCCeEEEEE
Q 028356 24 ISCSLQLSNKTDNYVAFKV 42 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKV 42 (210)
+...-++...+...||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 3334445555668999996
No 140
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.15 E-value=1.6e+02 Score=21.86 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 180 ARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
....+..|....+.+..+|..|.+++..
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777754
No 141
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.04 E-value=1.1e+02 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=18.6
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
=.+.+..|+.+.+.++..+...|+++..+||..
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554
No 142
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=25.97 E-value=1.6e+02 Score=17.74 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028356 185 SKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 185 ~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+|..|++.|+...++|++-|+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLe 25 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLE 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776654
No 143
>COG1470 Predicted membrane protein [Function unknown]
Probab=25.83 E-value=6.2e+02 Score=24.57 Aligned_cols=100 Identities=15% Similarity=0.263 Sum_probs=63.2
Q ss_pred CceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CC-CeeeCCCCEEEEEEEeccCccCCCC
Q 028356 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PN-TGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~-~GiI~P~~s~~V~Vtlq~~~~~p~~ 80 (210)
.+|.+.-..++-....+......+.|.|.++-++ =-|+.-..|.-+-++ |+ .--|.||++.+|.+|... |++
T Consensus 380 ~~v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v----P~~ 455 (513)
T COG1470 380 ELVKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV----PED 455 (513)
T ss_pred eeEEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc----CCC
Confidence 3444444333333445566778899999987554 345555567665554 55 456789999999999885 445
Q ss_pred CCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 81 MQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
....|++.-..+..+ .+ -++.+|||+..
T Consensus 456 a~aGdY~i~i~~ksD-q~-----------------s~e~tlrV~V~ 483 (513)
T COG1470 456 AGAGDYRITITAKSD-QA-----------------SSEDTLRVVVG 483 (513)
T ss_pred CCCCcEEEEEEEeec-cc-----------------cccceEEEEEe
Confidence 456677765555543 11 24678888876
No 144
>PRK10722 hypothetical protein; Provisional
Probab=25.64 E-value=1.3e+02 Score=26.42 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=23.5
Q ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q 028356 176 KSTEARALISKL----KDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 176 ~~~e~~~~i~~l----~~E~~~~~~~~~~L~~el~~ 207 (210)
.+++...--++| ..+.+.++||+..||.+|+.
T Consensus 159 ~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~ 194 (247)
T PRK10722 159 ALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLEL 194 (247)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 344555555677 77888899999999998863
No 145
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.55 E-value=99 Score=23.30 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
..+....++.+.+.+|..+...|.++...|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556677788888888888888888888876
No 146
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=25.42 E-value=2.1e+02 Score=24.22 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=31.3
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 168 TERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 168 ~~~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.|...+...+..+......|...+..|.++++.|++|-+
T Consensus 163 ~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~ 201 (206)
T PF14988_consen 163 RENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQW 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777788888999999999999999998854
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.30 E-value=1.2e+02 Score=26.51 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.++...|..|..|...|+.+++.++.||..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355666666666666666666666665543
No 148
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=25.24 E-value=3e+02 Score=23.50 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=36.6
Q ss_pred eeEEEEE-EeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEecc
Q 028356 24 ISCSLQL-SNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 24 ~~~~l~L-~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~ 73 (210)
..+.++| .|.......|--....++.|. .+..-.+.+|.+..+.|....
T Consensus 61 ~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~-~~~~~~~~~G~~Y~L~V~~~~ 110 (298)
T PF14054_consen 61 SGATVTIYEDGQGNEYLFEESSNNDGVYY-SSNSFRGRPGRTYRLEVETPG 110 (298)
T ss_pred CCcEEEEEeCCCcceEeecccCCCcceEE-ecccccccCCCEEEEEEEECC
Confidence 4589999 676667777766655557887 444448999999999999853
No 149
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=25.22 E-value=1.9e+02 Score=20.14 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=22.5
Q ss_pred EEEEEeCCCCeEE-----EEEeecCCCcE-EEeCCCeeeCCCCEEEEEEEec
Q 028356 27 SLQLSNKTDNYVA-----FKVKTTNPKKY-CVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 27 ~l~L~N~s~~~Va-----FKVKTT~P~~Y-~VrP~~GiI~P~~s~~V~Vtlq 72 (210)
.|+++|+....+- |.|.--.-..- ...+..+.+.|+++..|.+.+.
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~ 52 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVS 52 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEE
Confidence 3677777663322 22332222222 4455566677777766666443
No 150
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=25.14 E-value=2.4e+02 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLWTGL 209 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+|+..++..|-+-.+.+.++.+.-||||.|.+
T Consensus 39 ddii~kL~eLfKKLRDvl~~YnqkqQ~l~w~i 70 (195)
T PRK15361 39 DDIWMKLMELAKKLRDIMRSYNVEKQRLSWEL 70 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777788888899998864
No 151
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=24.95 E-value=2e+02 Score=20.40 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=8.0
Q ss_pred cccchHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEK 191 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~ 191 (210)
+..+..++...+.++.++.
T Consensus 15 L~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 15 LNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 152
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=24.85 E-value=1.4e+02 Score=22.36 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.--+|+.+.|.+|.+|+.++.=+-.+.|
T Consensus 31 sAA~EAMaMI~RLQ~EKAa~~mEA~Qy~ 58 (94)
T PF04576_consen 31 SAASEAMAMILRLQEEKAAVEMEARQYQ 58 (94)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456899999999999998765544443
No 153
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.71 E-value=1.5e+02 Score=21.64 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+..-+...|..|......+.++|..|++++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334566888888888899999999998874
No 154
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=24.64 E-value=2.5e+02 Score=27.57 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=29.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.....+....|+.|++++..+..+++.+..||.+
T Consensus 369 e~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r 402 (557)
T PF01763_consen 369 EGQINNQFDTIEDLKEENQDLEKKLRELESELSR 402 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999999999999999999876
No 155
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=92 Score=23.59 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=20.4
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCc
Q 028356 24 ISCSLQLSNKTDNYVAFKVKTTNPKK 49 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~ 49 (210)
..-.|++.+-...-+-||||.++|-+
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~Lk 44 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLK 44 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHH
Confidence 44677788866688899999998854
No 156
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.62 E-value=1.2e+02 Score=22.36 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQ 196 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~ 196 (210)
.+...+.+|.+|...+..
T Consensus 27 ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKT 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 157
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.35 E-value=1.1e+02 Score=20.83 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=22.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
.+....++...+.+|++|...+.++.+.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677888888888888888888888
No 158
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.16 E-value=1.4e+02 Score=22.35 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=29.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTG 208 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.++++...+...|..|++....+..+...+|++|...
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888899999999999999988887543
No 159
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.12 E-value=1.3e+02 Score=27.13 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=18.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..-.++.+.+.+|+.|+..+.+|...|+.|+.
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666666666666666666665543
No 160
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.89 E-value=84 Score=30.15 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=45.3
Q ss_pred eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCC--CeeeCCC---CEEEEEEEeccCccCCCCCCCCCeE
Q 028356 13 ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPN--TGIVLPR---STCDIIVTMQAQKEAPPDMQCKDKF 87 (210)
Q Consensus 13 eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~--~GiI~P~---~s~~V~Vtlq~~~~~p~~~~~kDKF 87 (210)
+|+|++. +-=+-.+.|+|.-++. +-+|=+-.|.|.-+ ++-|+|| .+|.|.||.-|+. +..|-=||
T Consensus 100 dvR~p~~--~iWkPDVLLYNSade~----FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD----~Q~C~mKF 169 (486)
T KOG3646|consen 100 DIRFPGG--NIWKPDVLLYNSADEQ----FDSTYKTNYVVYSTGSVLWVPPGIFKSSCKIDITWFPFD----DQVCYLKF 169 (486)
T ss_pred eeccCCc--cccCCceecccccccc----CCCcceeeEEEccCCeeeecCCceeeeeeEEEEEEeccc----ccEEEEEe
Confidence 4666654 4455689999997755 45566666777654 5667785 7999999999874 22565555
Q ss_pred E
Q 028356 88 L 88 (210)
Q Consensus 88 l 88 (210)
-
T Consensus 170 G 170 (486)
T KOG3646|consen 170 G 170 (486)
T ss_pred e
Confidence 3
No 161
>PF11175 DUF2961: Protein of unknown function (DUF2961); InterPro: IPR021345 This family of proteins has no known function.
Probab=23.79 E-value=2.1e+02 Score=24.92 Aligned_cols=38 Identities=29% Similarity=0.530 Sum_probs=28.1
Q ss_pred CceEEeCC---eeeEeccCCCeeeEEEEEEeCCCCeE-EE--EEee
Q 028356 5 ELLSIEPL---ELKFPFELKKQISCSLQLSNKTDNYV-AF--KVKT 44 (210)
Q Consensus 5 ~lL~i~P~---eL~F~~~~~k~~~~~l~L~N~s~~~V-aF--KVKT 44 (210)
-++.+.|. .-.|+-|+.+ +|.|+|.|.++..+ +| .|..
T Consensus 40 l~~~~~~~~~~n~y~pMPF~k--~arItl~N~~~~~~~~~~~~i~y 83 (237)
T PF11175_consen 40 LPFGVNPDGGFNCYFPMPFRK--SARITLENESDEPVSAFYYQIDY 83 (237)
T ss_pred eeEEECCCCcEEEEEecccCC--CeEEEEEeCCCCceeEEEEEEEe
Confidence 46777785 4678888864 59999999999887 44 4543
No 162
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=23.75 E-value=1.1e+02 Score=28.12 Aligned_cols=70 Identities=27% Similarity=0.387 Sum_probs=41.1
Q ss_pred CCCCCc-eEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCC-----cE----EEe------CCCe-eeCCC
Q 028356 1 MSTGEL-LSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPK-----KY----CVR------PNTG-IVLPR 62 (210)
Q Consensus 1 m~~~~l-L~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~-----~Y----~Vr------P~~G-iI~P~ 62 (210)
||.+.| |.+.=+ ||.|.++ .++..++++|+|++.| =|||...-. .| ..+ -.-| -|.||
T Consensus 190 mS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtV-KkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~Pg 265 (402)
T KOG3865|consen 190 MSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTV-KKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAPG 265 (402)
T ss_pred cCCCceEEEEEecchheecCC---ceeEEEEEecCCccee-eeeEEEeEeeceEEEEecccccceeeeeecccCCccCCC
Confidence 555333 333333 6777766 6899999999998765 355543111 11 111 2222 57788
Q ss_pred CEEEEEEEeccC
Q 028356 63 STCDIIVTMQAQ 74 (210)
Q Consensus 63 ~s~~V~Vtlq~~ 74 (210)
++..=..++-|.
T Consensus 266 stl~Kvf~l~Pl 277 (402)
T KOG3865|consen 266 STLSKVFTLTPL 277 (402)
T ss_pred CeeeeeEEechh
Confidence 887777777654
No 163
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.61 E-value=1.7e+02 Score=19.74 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=20.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+..+...+...|..++.|...+....++|.+-
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777777777766653
No 164
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=23.50 E-value=1.5e+02 Score=25.09 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
-+.+....++..-.|+..|++-|++||.|.
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedN 71 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDN 71 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777778888888888888753
No 165
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.12 E-value=1.4e+02 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 182 ALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+....+..|+.++.+||++|++.|+
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556667788899999999998875
No 166
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=22.80 E-value=2.5e+02 Score=24.20 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=28.8
Q ss_pred EEEEEEeCCCCeEEEE-EeecCC-CcEEEeCCCeeeCCCCEEEEEEE
Q 028356 26 CSLQLSNKTDNYVAFK-VKTTNP-KKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFK-VKTT~P-~~Y~VrP~~GiI~P~~s~~V~Vt 70 (210)
..|++.|+|..++.|- |+-... +.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 4599999999999765 332222 22322 3478999998888653
No 167
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.67 E-value=1.3e+02 Score=29.67 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=24.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
....++.+.+.+|.++++++.++.++|+++++
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888887765
No 168
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=22.48 E-value=2.2e+02 Score=24.59 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.1
Q ss_pred EEEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCEEEEEEE
Q 028356 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 27 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~Vt 70 (210)
.|++.|+|..+|.|- ++- +-+. + ...+.|.|.++..+.+.
T Consensus 163 ~l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~~ 203 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDWC 203 (234)
T ss_pred EEEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEecc
Confidence 399999999999885 232 2222 2 24578999998887663
No 169
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.47 E-value=1.2e+02 Score=24.83 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028356 183 LISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.+.+.+.|.+.+..|...|+.|
T Consensus 169 el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 169 ELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333344444444444443
No 170
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.46 E-value=1.9e+02 Score=23.81 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
...+...-.+|.+|...+.++|..|+.|+..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 171
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.39 E-value=1e+02 Score=27.53 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 182 ALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..+..|+++.+.++++|..|++|++.
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~ 57 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDA 57 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
No 172
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=22.11 E-value=1.9e+02 Score=19.25 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
..+.+.|.+|..|-..|..+...+|
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777666555555554443
No 173
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=22.04 E-value=4.2e+02 Score=24.68 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCc-----cCCCCCCCCCeEEEE
Q 028356 26 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK-----EAPPDMQCKDKFLLQ 90 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~-----~~p~~~~~kDKFlVq 90 (210)
..+.++|.+..+.-|-+-.. . .|--....|.||.+..+.+++.|+. ...+++ +.+|.|.
T Consensus 53 ~~f~V~N~~~~~~Efe~~~~---~-~vv~e~EnIaPG~s~~l~~~L~pGtY~~~C~~~~~~--~g~l~Vt 116 (375)
T PRK10378 53 TQFIIQNHSQKALEWEILKG---V-MVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNP--KGKLIVK 116 (375)
T ss_pred EEEEEEeCCCCcceEEeecc---c-cccccccccCCCCceEEEEecCCceEEeecCcCCCC--CceEEEe
Confidence 56777787777777665521 1 3334567899999988888887763 111222 5677775
No 174
>PLN02678 seryl-tRNA synthetase
Probab=21.97 E-value=2.1e+02 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+...++.+.+..|.+|...+..+...+++++..
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777888888888877777777654
No 175
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.92 E-value=86 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=17.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNK 200 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~ 200 (210)
.+....+...+...++|...|+++|+|
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 344455666677777777777777765
No 176
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.81 E-value=1.6e+02 Score=26.55 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.1
Q ss_pred HHHHHH
Q 028356 187 LKDEKN 192 (210)
Q Consensus 187 l~~E~~ 192 (210)
|++|..
T Consensus 55 le~Ee~ 60 (314)
T PF04111_consen 55 LEQEEE 60 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 177
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=21.78 E-value=1.2e+02 Score=25.99 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+....+...+.+-..||+.|++|.++|.-+.
T Consensus 33 eqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 33 EQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677889999999999999999988443
No 178
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.70 E-value=1.4e+02 Score=22.63 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028356 182 ALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+.+.+|..|...|..|+.-|++
T Consensus 78 ~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 78 KQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 179
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=21.67 E-value=2.3e+02 Score=24.41 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=27.5
Q ss_pred EEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEE
Q 028356 27 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~V 69 (210)
.|++.|+|..+|.|---.-.-+. + ...+|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999988632222222 2 246899999988864
No 180
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=21.32 E-value=1.2e+02 Score=19.80 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.+...++.|++|.+.|+.-|+.|=
T Consensus 15 ~l~vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 15 QLRVRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred hheeeHHHHHHHHHHHHHHhHHHH
Confidence 344567888999999988887763
No 181
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=21.15 E-value=2e+02 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 182 ALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.+..|+.|++.|.+....+..+-+|
T Consensus 7 k~mkeLEqEkd~LLqgLe~~Er~r~W 32 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLEMEERERDW 32 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46667778888888777777776665
No 182
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.12 E-value=2.2e+02 Score=26.41 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=26.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++.....+...+..|+.+++.+.++..+|+.|+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKR 61 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666778888888888888888888888764
No 183
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=21.01 E-value=1.9e+02 Score=24.70 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=28.5
Q ss_pred EEEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCEEEEEE
Q 028356 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~V 69 (210)
.|++.|+|..+|.|- ++.. -+. +. +.|.|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~-~~~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLN-SHE--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEEC-Ccc--cC-CCceECCCCccEEEc
Confidence 499999999999875 5543 222 22 358999999988864
No 184
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.89 E-value=1.6e+02 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=29.9
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTG 208 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..+..+-.++...+.+|.-..+.++++.+.||.+++.-
T Consensus 456 ~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ 493 (507)
T PF05600_consen 456 EDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEAD 493 (507)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666788888888888889999999999988764
No 185
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.87 E-value=6e+02 Score=23.59 Aligned_cols=59 Identities=27% Similarity=0.161 Sum_probs=36.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEE---------EeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEE
Q 028356 7 LSIEPLELKFPFELKKQISCSLQL---------SNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L---------~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vt 70 (210)
-++.|-...|.+..++.. --|.+ .|+.+-||.+=+--| |=+.|++-+|.|-.+..|.|.
T Consensus 33 ~sL~P~t~tf~~~Dg~s~-~ll~~~GTIp~~~~G~tYnIPV~iWlldt----yP~~pP~c~VnPT~~M~ik~~ 100 (365)
T KOG2391|consen 33 KSLRPKTDTFTHNDGRSR-LLLQLDGTIPVPYQGVTYNIPVIIWLLDT----YPYYPPICYVNPTSTMIIKVH 100 (365)
T ss_pred cccCcccceEEecCCCcc-chhhccCcccccccCCcccceEEEEeccc----CCCCCCeEEecCCchhhhHHh
Confidence 356676667776554332 12222 155566666666554 446789999999888888773
No 186
>PF00932 LTD: Lamin Tail Domain; InterPro: IPR001322 Intermediate filaments (IF) are primordial components of the cytoskeleton and the nuclear envelope []. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups, type I: acidic cytokeratins, type II: basic cytokeratins, type III: vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin, type IV: neurofilaments L, H and M, alpha-internexin and nestin, and type V: nuclear lamins A, B1, B2 and C. The lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane that may provide a framework for the nuclear envelope and may interact with chromatin. All IF proteins are structurally similar in that they consist of a central rod domain arranged in coiled-coil alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. The C-terminal domain has been charcterised for the lamins.; PDB: 3UMN_A 2KPW_A 3JT0_A 2LLL_A 1UFG_A 3GEF_D 1IFR_A 1IVT_A.
Probab=20.82 E-value=1.4e+02 Score=21.86 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCeE---EEEEeecCCCcEEEeCCCeeeCCCCEEEEEE
Q 028356 26 CSLQLSNKTDNYV---AFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~V 69 (210)
-.|.|+|.++..| .|+++-. ...|. .|..-++.||+.+.|.-
T Consensus 26 e~VEl~N~~~~~vdL~gw~L~~~-~~~~~-~~~~~~l~pg~~~~v~~ 70 (116)
T PF00932_consen 26 EWVELYNPGDSTVDLSGWKLVDS-NNTYT-FPPGTTLAPGEYVVVWT 70 (116)
T ss_dssp SEEEEEE-SSS-EEGTT-EEEEE-EEEEE---TT-EE-TTEEEEEEE
T ss_pred EEEEEEECCCCcEeeccEEEEEC-CccEE-ccCCcCcCCCCEEEEEE
Confidence 7899999999888 5777655 33333 45555666887766543
No 187
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.63 E-value=1.2e+02 Score=20.22 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028356 186 KLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~ 206 (210)
++..+..++.++.+++++|++
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555543
No 188
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.54 E-value=1.4e+02 Score=28.72 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+++..+..|..+-+.+++||++||+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 189
>PRK02119 hypothetical protein; Provisional
Probab=20.24 E-value=2.7e+02 Score=19.55 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
....++...|.+...+.+.+.++.+.|.+.|
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777776655
No 190
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.13 E-value=1.9e+02 Score=21.52 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.+...+...+.+|+++...+.++...|+.++..
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777776653
Done!