Query 028356
Match_columns 210
No_of_seqs 235 out of 664
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 2.3E-39 7.9E-44 260.6 14.1 135 3-142 15-152 (152)
2 2cri_A Vesicle-associated memb 100.0 9.2E-37 3.2E-41 243.9 19.2 124 4-131 12-136 (147)
3 1z9l_A Vesicle-associated memb 100.0 5.6E-36 1.9E-40 233.9 17.4 122 1-126 4-127 (128)
4 1msp_A MSP, major sperm protei 100.0 5.5E-34 1.9E-38 222.6 16.6 118 5-126 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 7E-29 2.4E-33 189.4 14.7 104 7-124 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 3.1E-28 1E-32 187.6 15.8 106 5-124 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.4 7.5E-07 2.6E-11 67.7 8.1 75 11-91 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.2 5.6E-06 1.9E-10 61.2 7.8 71 4-74 7-81 (112)
9 3qbt_B Inositol polyphosphate 98.1 1.9E-05 6.5E-10 61.8 10.7 70 4-73 24-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.00026 9E-09 63.3 10.2 71 4-74 27-104 (366)
11 2qsv_A Uncharacterized protein 96.7 0.0071 2.4E-07 50.0 8.7 68 7-75 3-71 (220)
12 2qsv_A Uncharacterized protein 96.3 0.022 7.4E-07 47.0 9.4 67 6-74 119-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 94.5 0.71 2.4E-05 39.2 12.7 107 7-127 30-146 (257)
14 2co7_B SAFB chaperone, putativ 92.7 1 3.5E-05 37.2 10.5 84 7-96 14-102 (221)
15 1klf_A FIMC chaperone, chapero 92.4 3.8 0.00013 33.4 13.9 109 7-127 2-117 (205)
16 2xg5_A PAPD, chaperone protein 92.3 1.8 6.2E-05 35.6 11.4 107 7-127 2-117 (218)
17 4ay0_A Chaperone protein CAF1M 91.8 4.8 0.00016 33.1 13.5 107 7-127 14-127 (218)
18 4djm_A DRAB; chaperone, PILI; 91.3 1.7 5.7E-05 36.5 10.2 84 7-96 24-112 (239)
19 1l4i_A SFAE protein; periplasm 90.3 6.3 0.00022 32.0 13.8 109 7-127 2-117 (206)
20 2r39_A FIXG-related protein; s 89.0 2.2 7.4E-05 31.4 8.1 51 24-74 33-84 (118)
21 3gfu_C Chaperone protein FAEE; 88.3 9.9 0.00034 31.5 13.6 105 7-127 2-113 (224)
22 2jee_A YIIU; FTSZ, septum, coi 83.5 1.4 4.7E-05 31.2 4.1 34 172-205 31-64 (81)
23 3rfr_A PMOB; membrane, oxidore 81.9 5.4 0.00018 36.1 8.3 64 7-73 284-368 (419)
24 1yew_A Particulate methane mon 80.0 13 0.00044 33.2 10.0 65 7-73 250-336 (382)
25 3zy7_A AP-1 complex subunit ga 75.3 5.7 0.00019 29.7 5.6 67 23-93 30-102 (122)
26 2oqq_A Transcription factor HY 74.7 5.2 0.00018 24.7 4.2 33 173-205 8-40 (42)
27 2akf_A Coronin-1A; coiled coil 74.7 2.3 7.7E-05 24.3 2.4 23 185-207 2-24 (32)
28 1hlo_A Protein (transcription 74.4 3.8 0.00013 28.3 4.1 28 177-204 52-79 (80)
29 1am9_A Srebp-1A, protein (ster 73.9 5.6 0.00019 27.7 4.9 30 177-206 45-74 (82)
30 2dgc_A Protein (GCN4); basic d 71.4 4.1 0.00014 27.1 3.5 32 175-206 30-61 (63)
31 1a93_B MAX protein, coiled coi 71.3 9.4 0.00032 22.5 4.6 27 181-207 6-32 (34)
32 2jee_A YIIU; FTSZ, septum, coi 70.2 6.3 0.00022 27.8 4.4 34 172-205 10-43 (81)
33 1gd2_E Transcription factor PA 69.0 7 0.00024 26.7 4.3 44 163-206 19-67 (70)
34 1t2k_D Cyclic-AMP-dependent tr 68.1 7 0.00024 25.5 4.1 30 176-205 30-59 (61)
35 1nkp_B MAX protein, MYC proto- 67.8 9.3 0.00032 26.3 4.9 29 179-207 51-79 (83)
36 1nkp_B MAX protein, MYC proto- 67.5 9.5 0.00032 26.3 4.9 31 177-207 42-72 (83)
37 1nlw_A MAD protein, MAX dimeri 66.3 10 0.00035 26.3 4.9 28 179-206 51-78 (80)
38 1jnm_A Proto-oncogene C-JUN; B 66.2 9 0.00031 25.1 4.4 33 175-207 22-54 (62)
39 1gyu_A Adapter-related protein 66.1 13 0.00043 28.5 5.8 67 24-94 49-121 (140)
40 1dh3_A Transcription factor CR 65.9 6.4 0.00022 25.4 3.5 29 177-205 24-52 (55)
41 1t2k_D Cyclic-AMP-dependent tr 65.6 9.5 0.00032 24.9 4.4 33 175-207 22-54 (61)
42 1iu1_A Gamma1-adaptin; coated 65.1 16 0.00055 28.0 6.3 67 24-94 55-127 (146)
43 3m91_A Proteasome-associated A 64.6 11 0.00037 24.2 4.3 35 173-207 14-48 (51)
44 3hnw_A Uncharacterized protein 64.4 8.1 0.00028 29.6 4.4 33 175-207 103-135 (138)
45 3idu_A Uncharacterized protein 64.4 22 0.00076 26.6 6.8 69 20-97 31-100 (127)
46 1ci6_A Transcription factor AT 63.6 11 0.00037 24.9 4.4 33 175-207 23-55 (63)
47 2wuj_A Septum site-determining 62.8 14 0.00049 23.8 4.8 29 178-206 23-51 (57)
48 1nlw_A MAD protein, MAX dimeri 62.4 13 0.00045 25.7 4.8 30 177-206 42-71 (80)
49 3s9g_A Protein hexim1; cyclin 61.8 9.1 0.00031 27.9 3.9 26 181-206 64-89 (104)
50 1go4_E MAD1 (mitotic arrest de 61.6 14 0.00049 26.9 5.0 32 176-207 13-44 (100)
51 1dh3_A Transcription factor CR 60.6 14 0.00049 23.7 4.4 26 182-207 22-47 (55)
52 2wt7_A Proto-oncogene protein 59.9 14 0.00047 24.3 4.4 30 177-206 25-54 (63)
53 2wuj_A Septum site-determining 57.9 9.3 0.00032 24.8 3.2 34 172-205 24-57 (57)
54 3m9b_A Proteasome-associated A 57.2 6.2 0.00021 33.5 2.7 34 174-207 60-93 (251)
55 1nkp_A C-MYC, MYC proto-oncoge 57.0 19 0.00064 25.3 4.9 27 180-206 57-83 (88)
56 1hjb_A Ccaat/enhancer binding 55.8 16 0.00056 25.9 4.4 36 172-207 33-68 (87)
57 2oxj_A Hybrid alpha/beta pepti 55.4 28 0.00097 20.3 4.6 27 177-203 3-29 (34)
58 2huh_A Putative DNA mismatch r 55.4 33 0.0011 26.7 6.5 64 25-96 29-93 (147)
59 1kd8_A GABH AIV, GCN4 acid bas 55.3 30 0.001 20.5 4.8 29 177-205 3-31 (36)
60 1gd2_E Transcription factor PA 55.3 14 0.00049 25.1 3.9 31 177-207 31-61 (70)
61 2z5i_A TM, general control pro 54.3 24 0.00081 22.5 4.6 34 176-209 13-46 (52)
62 3m48_A General control protein 53.8 13 0.00045 21.7 3.0 23 180-202 5-27 (33)
63 1gu4_A CAAT/enhancer binding p 52.9 20 0.00068 24.8 4.4 36 172-207 33-68 (78)
64 2yy0_A C-MYC-binding protein; 52.8 28 0.00095 22.3 4.8 31 177-207 21-51 (53)
65 3c3g_A Alpha/beta peptide with 52.0 25 0.00084 20.5 3.9 24 179-202 4-27 (33)
66 1fmh_A General control protein 51.5 24 0.00084 19.9 3.7 23 184-206 3-25 (33)
67 1go4_E MAD1 (mitotic arrest de 50.8 22 0.00077 25.8 4.5 26 181-206 11-36 (100)
68 2zvf_A Alanyl-tRNA synthetase; 50.8 18 0.0006 27.8 4.3 35 173-207 23-57 (171)
69 3isy_A Bsupi, intracellular pr 50.6 40 0.0014 25.1 6.1 47 1-53 2-49 (120)
70 2l5g_A GPS2 protein, G protein 50.6 28 0.00097 20.8 4.1 24 178-201 11-34 (38)
71 1jnm_A Proto-oncogene C-JUN; B 49.9 8.1 0.00028 25.3 1.9 36 171-206 25-60 (62)
72 1uo4_A General control protein 49.6 25 0.00087 20.6 3.7 19 188-206 7-25 (34)
73 2oxj_A Hybrid alpha/beta pepti 49.2 29 0.00098 20.3 3.9 24 184-207 3-26 (34)
74 1nkp_A C-MYC, MYC proto-oncoge 47.8 28 0.00097 24.3 4.6 29 177-205 47-75 (88)
75 1uii_A Geminin; human, DNA rep 47.4 26 0.0009 24.6 4.3 25 179-203 50-74 (83)
76 2xzz_A Protein-glutamine gamma 47.4 75 0.0026 22.7 7.5 62 13-75 9-75 (102)
77 2w6b_A RHO guanine nucleotide 47.0 37 0.0013 22.0 4.6 26 181-206 9-34 (56)
78 3e38_A Two-domain protein cont 46.3 28 0.00095 30.4 5.3 64 26-96 270-333 (343)
79 4fm3_A Uncharacterized hypothe 46.3 34 0.0012 24.8 4.9 39 169-207 58-96 (98)
80 3w03_C DNA repair protein XRCC 46.0 20 0.00067 29.0 3.9 28 179-206 149-176 (184)
81 2e9g_A AP-1 complex subunit ga 43.8 11 0.00039 28.3 2.1 42 23-64 39-84 (131)
82 1dip_A Delta-sleep-inducing pe 42.9 42 0.0015 23.1 4.6 29 175-203 15-43 (78)
83 3mud_A DNA repair protein XRCC 42.5 28 0.00095 27.8 4.3 34 175-208 135-168 (175)
84 1p4u_A ADP-ribosylation factor 42.5 38 0.0013 26.2 5.0 65 26-94 57-131 (153)
85 3kin_B Kinesin heavy chain; mo 41.5 42 0.0014 24.7 4.9 30 178-207 85-114 (117)
86 3hn9_A Lamin-B1; structural ge 41.3 50 0.0017 24.5 5.4 41 26-67 25-71 (123)
87 2wt7_A Proto-oncogene protein 40.9 43 0.0015 21.8 4.4 35 172-206 27-61 (63)
88 2w6a_A ARF GTPase-activating p 40.9 76 0.0026 20.9 6.2 31 175-205 27-57 (63)
89 2dgc_A Protein (GCN4); basic d 39.3 47 0.0016 21.8 4.4 27 181-207 29-55 (63)
90 2wq1_A General control protein 38.7 57 0.002 18.9 4.6 26 178-203 3-28 (33)
91 2bni_A General control protein 38.5 48 0.0016 19.4 3.7 25 178-202 4-28 (34)
92 1wlq_A Geminin; coiled-coil; 2 38.5 35 0.0012 24.0 3.8 25 179-203 42-66 (83)
93 3vta_A Cucumisin; subtilisin-l 38.1 1.4E+02 0.0047 27.8 9.0 51 23-73 538-591 (621)
94 2wt7_B Transcription factor MA 37.3 58 0.002 23.1 4.9 28 179-206 52-79 (90)
95 2wt7_B Transcription factor MA 35.9 52 0.0018 23.4 4.4 23 183-205 49-71 (90)
96 1ifr_A Lamin A/C; immunoglobul 35.2 59 0.002 24.1 4.9 41 26-66 19-65 (121)
97 2g30_A AP-2 complex subunit be 34.7 42 0.0014 28.1 4.5 52 21-73 54-111 (258)
98 3mtu_E Head morphogenesis prot 34.3 43 0.0015 23.2 3.6 35 174-208 36-70 (77)
99 1jcd_A Major outer membrane li 34.2 66 0.0023 20.5 4.3 33 175-207 11-43 (52)
100 3c3f_A Alpha/beta peptide with 33.2 74 0.0025 18.5 4.6 27 177-203 3-29 (34)
101 2yy0_A C-MYC-binding protein; 33.0 66 0.0023 20.4 4.2 26 173-198 24-49 (53)
102 2w83_C C-JUN-amino-terminal ki 32.7 69 0.0024 22.1 4.5 27 178-204 33-59 (77)
103 3viq_B Mating-type switching p 32.6 55 0.0019 23.1 4.0 28 178-205 4-31 (85)
104 1ci6_A Transcription factor AT 32.1 65 0.0022 21.0 4.2 35 171-205 26-60 (63)
105 1ic2_A Tropomyosin alpha chain 32.1 65 0.0022 21.9 4.4 34 174-207 26-59 (81)
106 3twe_A Alpha4H; unknown functi 32.0 64 0.0022 17.4 3.4 18 189-206 8-25 (27)
107 2xdj_A Uncharacterized protein 32.0 84 0.0029 21.8 4.9 29 178-206 23-51 (83)
108 3q4f_C DNA repair protein XRCC 31.5 54 0.0018 26.4 4.3 28 177-204 156-183 (186)
109 3w03_C DNA repair protein XRCC 31.1 56 0.0019 26.3 4.4 33 175-207 152-184 (184)
110 2qdq_A Talin-1; dimerisation d 31.1 90 0.0031 19.8 4.5 27 178-204 11-37 (50)
111 3jt0_A Lamin-B1; structural ge 30.7 61 0.0021 24.9 4.4 42 26-67 38-84 (144)
112 2iaa_C Azurin; quinoprotein, t 30.3 64 0.0022 23.9 4.4 64 5-71 10-98 (128)
113 2l5g_B Putative uncharacterize 30.1 97 0.0033 18.9 4.3 27 178-204 5-31 (42)
114 1yyc_A LEA protein, putative l 30.0 2E+02 0.0068 22.5 7.7 51 23-73 63-119 (174)
115 2w6a_A ARF GTPase-activating p 30.0 79 0.0027 20.9 4.1 33 174-206 19-51 (63)
116 2ccw_A Azurin II, AZN-2; elect 29.9 38 0.0013 25.2 3.0 64 6-72 12-100 (129)
117 2aze_B Transcription factor E2 29.9 76 0.0026 23.0 4.6 30 176-205 7-36 (106)
118 4hci_A Cupredoxin 1; structura 29.8 1.3E+02 0.0045 20.4 6.5 52 8-71 24-75 (100)
119 1wm3_A Ubiquitin-like protein 29.8 45 0.0015 21.8 3.1 21 27-47 3-23 (72)
120 4h22_A Leucine-rich repeat fli 29.1 1E+02 0.0035 22.4 5.1 30 173-202 7-36 (103)
121 2lll_A Lamin-B2; immunoglobuli 29.1 73 0.0025 24.3 4.6 42 26-67 34-81 (139)
122 1kd8_B GABH BLL, GCN4 acid bas 29.0 92 0.0032 18.4 4.9 28 177-204 3-30 (36)
123 3nmd_A CGMP dependent protein 28.9 88 0.003 21.3 4.5 27 181-207 39-65 (72)
124 2wvr_A Geminin; DNA replicatio 28.8 62 0.0021 26.4 4.3 25 179-203 119-143 (209)
125 1t6f_A Geminin; coiled-coil, c 28.0 91 0.0031 18.4 3.8 24 179-202 11-34 (37)
126 2eqb_B RAB guanine nucleotide 27.9 1.1E+02 0.0038 22.0 5.1 15 192-206 43-57 (97)
127 1c7s_A Beta-N-acetylhexosamini 26.9 1.3E+02 0.0043 29.7 6.9 49 24-72 40-110 (858)
128 3mnm_A ADP-ribosylation factor 26.0 1.9E+02 0.0066 21.1 7.9 50 22-71 31-86 (123)
129 2zxx_A Geminin; coiled-coil, c 25.9 74 0.0025 22.1 3.7 26 179-204 38-63 (79)
130 2io0_B Small ubiquitin-related 25.9 61 0.0021 22.5 3.4 22 26-47 6-27 (91)
131 2hy6_A General control protein 25.1 1.1E+02 0.0037 17.8 4.4 26 178-203 4-29 (34)
132 3ra3_B P2F; coiled coil domain 24.7 60 0.002 17.7 2.4 12 194-205 5-16 (28)
133 2zqm_A Prefoldin beta subunit 24.7 88 0.003 22.1 4.2 35 173-207 75-109 (117)
134 3q8t_A Beclin-1; autophagy, AT 24.6 1.3E+02 0.0043 21.3 4.9 30 177-206 20-49 (96)
135 3ndz_E Endoglucanase D; cellot 24.6 2E+02 0.0067 20.6 6.5 51 22-72 15-86 (107)
136 1zxa_A CGMP-dependent protein 24.4 1.1E+02 0.0038 20.5 4.2 25 183-207 26-50 (67)
137 1qhq_A Protein (auracyanin); e 24.4 59 0.002 23.8 3.3 62 7-72 28-113 (140)
138 3azd_A Short alpha-tropomyosin 24.0 36 0.0012 20.1 1.6 29 177-205 6-34 (37)
139 4ath_A MITF, microphthalmia-as 24.0 93 0.0032 21.8 4.0 26 178-203 35-60 (83)
140 3i6s_A Subtilisin-like proteas 23.9 3.2E+02 0.011 25.6 9.0 51 24-74 560-613 (649)
141 1jcd_A Major outer membrane li 23.8 1.3E+02 0.0045 19.1 4.3 29 176-204 5-33 (52)
142 1deb_A APC protein, adenomatou 23.8 1.2E+02 0.0039 19.4 4.0 21 181-201 30-50 (54)
143 3m9b_A Proteasome-associated A 23.8 76 0.0026 26.7 4.1 32 172-203 65-96 (251)
144 3u1c_A Tropomyosin alpha-1 cha 23.4 1.3E+02 0.0046 21.3 4.9 34 174-207 29-62 (101)
145 2v66_B Nuclear distribution pr 23.3 1.3E+02 0.0043 22.2 4.8 27 178-204 31-57 (111)
146 3iyn_Q Protein IX, PIX, hexon- 23.3 1.6E+02 0.0055 22.2 5.4 32 175-206 98-129 (140)
147 1uii_A Geminin; human, DNA rep 23.3 1.5E+02 0.0052 20.7 4.9 31 177-207 41-71 (83)
148 2v4h_A NF-kappa-B essential mo 23.3 80 0.0027 23.3 3.6 22 186-207 87-108 (110)
149 3tnu_B Keratin, type II cytosk 23.2 95 0.0033 22.9 4.2 24 178-201 39-62 (129)
150 2wg5_A General control protein 23.1 82 0.0028 22.7 3.7 21 181-201 13-33 (109)
151 1uix_A RHO-associated kinase; 22.9 1.4E+02 0.0049 20.2 4.6 13 176-188 19-31 (71)
152 1ufg_A Lamin A, nuclear lamin; 22.7 1.3E+02 0.0045 23.1 5.1 41 26-66 50-96 (151)
153 1nwp_A Azurin; electron transp 22.1 72 0.0025 23.6 3.3 65 5-72 11-100 (128)
154 2jxx_A Nfatc2-interacting prot 22.0 1.1E+02 0.0039 21.6 4.2 27 21-47 21-48 (97)
155 1zme_C Proline utilization tra 21.9 1.1E+02 0.0038 19.3 3.9 23 183-205 45-67 (70)
156 1klf_A FIMC chaperone, chapero 21.9 1.4E+02 0.0049 23.7 5.3 39 27-69 139-177 (205)
157 1bxv_A Plastocyanin; copper pr 21.6 1.3E+02 0.0045 19.6 4.4 54 6-69 13-66 (91)
158 1gmj_A ATPase inhibitor; coile 21.5 1.5E+02 0.005 20.8 4.5 20 188-207 50-69 (84)
159 1xo8_A AT1G01470; structural g 21.2 1.9E+02 0.0067 21.8 5.7 49 24-72 41-95 (151)
160 3mq7_A Bone marrow stromal ant 21.2 1.3E+02 0.0044 22.5 4.4 19 184-202 73-91 (121)
161 1fxk_A Prefoldin; archaeal pro 21.1 1.3E+02 0.0046 20.7 4.5 36 173-208 70-105 (107)
162 3s9g_A Protein hexim1; cyclin 21.0 1.1E+02 0.0037 22.2 3.9 28 176-203 66-93 (104)
163 3vmx_A Voltage-gated hydrogen 20.9 1.4E+02 0.0047 18.8 3.9 31 173-203 9-39 (48)
164 1l8d_A DNA double-strand break 20.8 1.2E+02 0.0042 21.3 4.3 32 175-206 71-102 (112)
165 2io1_B Small ubiquitin-related 20.8 88 0.003 21.8 3.4 23 25-47 7-29 (94)
166 2j5u_A MREC protein; bacterial 20.7 86 0.0029 26.0 3.8 30 177-206 28-60 (255)
167 3o0l_A Uncharacterized protein 20.5 2E+02 0.0068 20.8 5.4 36 20-55 36-73 (112)
168 2d07_B Ubiquitin-like protein 20.3 92 0.0031 21.5 3.4 24 24-47 16-39 (93)
169 3hnw_A Uncharacterized protein 20.3 1.3E+02 0.0044 22.7 4.5 9 178-186 78-86 (138)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=2.3e-39 Score=260.65 Aligned_cols=135 Identities=32% Similarity=0.491 Sum_probs=124.7
Q ss_pred CCCceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCC
Q 028356 3 TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 3 ~~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~ 81 (210)
.+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 8999999999999999999999999999999999999999999999999999999999999753 2
Q ss_pred CCCCeEEEEEEecC--CCCCccchhHHhhcccCCCeeeEEEeEEEEeCCCCCCCCCCCCCCCC
Q 028356 82 QCKDKFLLQSVKTN--DGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEG 142 (210)
Q Consensus 82 ~~kDKFlVqs~~~~--~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~p~~~~s~~~~~~~~~ 142 (210)
.|+|||+||++.++ ++++..|+. ++|++..+..++++||||+|+.|++|+|++.+|.++|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~ 152 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG 152 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence 68999999999999 666777885 8999888888999999999999999999999998765
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=9.2e-37 Score=243.94 Aligned_cols=124 Identities=31% Similarity=0.600 Sum_probs=113.1
Q ss_pred CCceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCC
Q 028356 4 GELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQ 82 (210)
Q Consensus 4 ~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~ 82 (210)
+++|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|||||++|+|.||++++|.|+|+++. .+++++
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~p~~~ 90 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YDPNEK 90 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CCTTCC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CCcccc
Confidence 579999997 999999999999999999999999999999999999999999999999999999999999985 345678
Q ss_pred CCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeCCCCC
Q 028356 83 CKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQP 131 (210)
Q Consensus 83 ~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~p~~~ 131 (210)
|+|||+||++.++++.+ |+ .++|++..+..++++||||+|+.|++.
T Consensus 91 ~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp SCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred CCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 99999999999998653 56 589988888889999999999987654
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=5.6e-36 Score=233.86 Aligned_cols=122 Identities=31% Similarity=0.603 Sum_probs=110.8
Q ss_pred CC-CCCceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCC
Q 028356 1 MS-TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP 78 (210)
Q Consensus 1 m~-~~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p 78 (210)
|+ .+++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|+|+++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 44 3579999997 9999999999999999999999999999999999999999999999999999999999999853 4
Q ss_pred CCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 79 PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 79 ~~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
++++|+|||+||++.++++.+ |+ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 556899999999999998653 56 5899988888899999999996
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=5.5e-34 Score=222.59 Aligned_cols=118 Identities=20% Similarity=0.371 Sum_probs=107.5
Q ss_pred CceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCC
Q 028356 5 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQC 83 (210)
Q Consensus 5 ~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~ 83 (210)
..|.|+|. +|.|++|+++.++|.|+|+|+|+++||||||||+|++|||||++|+|.||+++.|.|+||++.+.|++ ..
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~-~~ 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED-LN 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-CS
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-cC
Confidence 57999997 89999999999999999999999999999999999999999999999999999999999998766655 35
Q ss_pred CCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028356 84 KDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 84 kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
+|||+|||+.++++.+ +|+..+||.++ ..+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 9999999999998874 68888888653 3589999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=7e-29 Score=189.44 Aligned_cols=104 Identities=22% Similarity=0.360 Sum_probs=89.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCCCCe
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDK 86 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~kDK 86 (210)
|.|+|.+|.|.++ ..+|.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++ + .++||
T Consensus 3 L~i~P~~l~F~~~---~~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAA---GVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETT---CEEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCC---CCeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 7999999999987 3479999999999999999999999999999999999999999999999985 2 47999
Q ss_pred EEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEE
Q 028356 87 FLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI 124 (210)
Q Consensus 87 FlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~ 124 (210)
|+||++.++++. .|. .++|++... .++.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 355 589988654 455666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=3.1e-28 Score=187.65 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=92.7
Q ss_pred CceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCCC
Q 028356 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCK 84 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~k 84 (210)
.++.++|.+|.|+++ +.++.|+|+|+++.+||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 579999999999976 4689999999999999999999999999999999999999999999999986 2 479
Q ss_pred CeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEE
Q 028356 85 DKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI 124 (210)
Q Consensus 85 DKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~ 124 (210)
|||+||++.++++. .|. .++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 99999999999753 244 489988655 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=7.5e-07 Score=67.67 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCCCCeEEE
Q 028356 11 PLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLL 89 (210)
Q Consensus 11 P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~kDKFlV 89 (210)
|..|.|.. +.+......|.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|... . .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~--g--~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSV--G--DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSS--B--CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCC--c--cEEEEEEE
Confidence 66788866 456778899999999999999999974 46999999999999999999999998631 1 24455555
Q ss_pred EE
Q 028356 90 QS 91 (210)
Q Consensus 90 qs 91 (210)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=5.6e-06 Score=61.22 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCceEEeCCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeecCC---CcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNP---KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT~P---~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
+..+.+++..|.|-. ..+...++.++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 467889998888876 35677889999999999999999964221 469999999999999999999999985
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.15 E-value=1.9e-05 Score=61.77 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCceEEeCCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeec------CCCcEEEeCCCeeeCCCCEEEEEEEecc
Q 028356 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT------~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~ 73 (210)
..-+.+++.+|.|-- .+....++.|+|+|++.-+.-|++.-. .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 356888889999985 467788999999999999999999853 3456899999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.64 E-value=0.00026 Score=63.31 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=59.5
Q ss_pred CCceEEeCCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeecC------CCcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTN------PKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT~------P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
..-+.|++.+|.|-- .+....+..|+|+|++.-++.|++.... +.-+.|.|..|.|.||+++.|.|++.-.
T Consensus 27 ~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 27 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp -CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 356889999999965 5778899999999999999999997542 2226799999999999999999998754
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.68 E-value=0.0071 Score=49.96 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=58.4
Q ss_pred eEEeCCeeeEecc-CCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCc
Q 028356 7 LSIEPLELKFPFE-LKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 7 L~i~P~eL~F~~~-~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~ 75 (210)
|+++|..+.|.-- .+......++++|.++.++-++.-.. |..+.+++..+.|.||++..|.|++.+..
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 8899999999873 34556789999999999999997644 88888899999999999999999998753
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.30 E-value=0.022 Score=47.02 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=56.1
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEE-EEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccC
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAF-KVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaF-KVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~ 74 (210)
.+.++ ..+.|-.-.+....+.++|+|.++.++.+ +|+|++ +...+.++.+.|.||++..|.|++.+.
T Consensus 119 ~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 119 VMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred EEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 46677 77777632267788999999999999988 888765 789999999999999999999999975
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=94.49 E-value=0.71 Score=39.16 Aligned_cols=107 Identities=15% Similarity=0.233 Sum_probs=69.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC----------CCcEEEeCCCeeeCCCCEEEEEEEeccCcc
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN----------PKKYCVRPNTGIVLPRSTCDIIVTMQAQKE 76 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~----------P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~ 76 (210)
|.|.|..++|+.. .....|+|+|.++.++.-.+-..+ ..-|.|-|+.-.|+||+...|.|..... .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5677788888864 335899999999988766554322 1249999999999999999999987754 3
Q ss_pred CCCCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028356 77 APPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 77 ~p~~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
+|.|.. --|-+..-.+|+.... + ...=......+|++-|.+
T Consensus 106 LP~DrE--Slf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP 146 (257)
T 3q48_A 106 LPTDRE--SLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRP 146 (257)
T ss_dssp CCSSSC--EEEEEEEEEECCC-----------------CCEEEEEEEEEEC
T ss_pred CCCCce--eEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEec
Confidence 565533 3455555555543210 0 001123457888888883
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=92.73 E-value=1 Score=37.21 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=60.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC-----CCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN-----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~ 81 (210)
|.|.+..+.|+... ....|+|.|.++.++.-.+.... ..-|.|-|+.-.|+||+...|.|..... .+|.|.
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 67888889998652 46799999999887765553321 1259999999999999999999988763 466653
Q ss_pred CCCCeEEEEEEecCC
Q 028356 82 QCKDKFLLQSVKTND 96 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~ 96 (210)
. .-|-+..-.+|+
T Consensus 90 E--slf~lnv~eIPp 102 (221)
T 2co7_B 90 E--TLQWVCIKAVPP 102 (221)
T ss_dssp C--EEEEEEEEEECC
T ss_pred e--EEEEEEeecCCC
Confidence 3 344444444443
No 15
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=92.42 E-value=3.8 Score=33.35 Aligned_cols=109 Identities=11% Similarity=0.182 Sum_probs=69.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEEEeec-----CCCcEEEeCCCeeeCCCCEEEEEEEe-ccCccCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKVKTT-----NPKKYCVRPNTGIVLPRSTCDIIVTM-QAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~V~Vtl-q~~~~~p~ 79 (210)
+.|++..+.|+.. .....|+|.|.++. ++.-.+-.. ...-|.|-|+.-.|+||+...|.|.. .+. .+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 5677888999875 34689999999987 765554322 12359999999999999999999988 653 4666
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028356 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|.. .-|-+....+|+.....+ ....=......+|++-|.+
T Consensus 78 DrE--slf~lnv~eIPp~~~~~~------~~n~lqia~r~riKlFyRP 117 (205)
T 1klf_A 78 DRE--SLFWMNVKAIPSMDKSKL------TENTLQLAIISRIKLYYRP 117 (205)
T ss_dssp SSC--EEEEEEEEEECCCCTTST------TSCEEEEEEEEEEEEEEEC
T ss_pred Cce--EEEEEEeEecCCCCcccc------CCceEEEEeeeeeeEEEcc
Confidence 533 344444444554211000 0000012446788888873
No 16
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=92.33 E-value=1.8 Score=35.64 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=70.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEEEeecC-------CCcEEEeCCCeeeCCCCEEEEEEEeccC-ccC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKVKTTN-------PKKYCVRPNTGIVLPRSTCDIIVTMQAQ-KEA 77 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~-~~~ 77 (210)
+.|++..+.|+.. .....|+|+|.++. ++.-.+.... ..-|.|-|+.-.|+||+...|.|...+. ..+
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 5677888999875 34679999999987 7665554322 2349999999999999999999988762 246
Q ss_pred CCCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028356 78 PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 78 p~~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|.|.. .-|-+....+|+... + .. .=......+|++-|.+
T Consensus 79 P~DrE--Slf~lnv~eIPp~~~--~--~n-----~lqia~r~rIKlFyRP 117 (218)
T 2xg5_A 79 PQDRE--SLFYFNLREIPPRSE--K--AN-----VLQIALQTKIKLFYRP 117 (218)
T ss_dssp CSSSC--EEEEEEEEEECCCCC--C--TT-----EEEEEEEEEEEEEEEC
T ss_pred CCCce--EEEEEEeecCCCCCC--C--Cc-----eEEEEehheeeEEEcC
Confidence 76633 344444444454211 1 00 0022457788888873
No 17
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=91.77 E-value=4.8 Score=33.14 Aligned_cols=107 Identities=9% Similarity=0.084 Sum_probs=65.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec-------CCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~ 79 (210)
+.|.-..++|+.. .....|+|+|.++.++.-..... ...-|.|-|+.-.|+||+...|.|...+. .+|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5666778888864 33678999999998865554321 11249999999999999999999988764 3565
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028356 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|.. .-|-+....+|+...... . .=......+|++-|.+
T Consensus 90 DRE--Slf~lnv~eIPp~~~~~~---n-----~lqia~r~rIKlFyRP 127 (218)
T 4ay0_A 90 DKE--SLKWLCVKGIPPKDEDIW---V-----DVQFAINNCIKLLVRP 127 (218)
T ss_dssp SSC--EEEEEEEEEECC----------------------CEEEEEEEC
T ss_pred CcE--EEEEEEEEecCCCCcccc---c-----eeEEEEEEEEEEEEcC
Confidence 522 335555555554211000 0 0112346678888873
No 18
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=91.26 E-value=1.7 Score=36.46 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=58.0
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec-----CCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-----NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~ 81 (210)
|.|.+..++|+.. .....|+|+|.++.++.-.+-.. ...-|.|-|+.-.|+||+...|.|..... .+|.|.
T Consensus 24 v~l~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPA---SSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTT---SSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 5688888998864 24579999999988765443321 12349999999999999999999987654 356553
Q ss_pred CCCCeEEEEEEecCC
Q 028356 82 QCKDKFLLQSVKTND 96 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~ 96 (210)
. .-|-+....+|+
T Consensus 100 E--Slf~lnv~eIPp 112 (239)
T 4djm_A 100 E--SLQWICVKGIPP 112 (239)
T ss_dssp C--EEEEEEEEEECC
T ss_pred e--EEEEEEEEecCC
Confidence 3 334444444443
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=90.34 E-value=6.3 Score=31.98 Aligned_cols=109 Identities=10% Similarity=0.171 Sum_probs=68.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCC-CeEEEEEeecC-----CCcEEEeCCCeeeCCCCEEEEEEE-eccCccCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKTTN-----PKKYCVRPNTGIVLPRSTCDIIVT-MQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~-~~VaFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~V~Vt-lq~~~~~p~ 79 (210)
+.|++..+.|+.. .....|+|+|.++ .++.-.+-..+ ..-|.|-|+.-.|+||+...|.|. ... ..+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677888899875 3468999999986 77665553321 234999999999999999999998 654 24666
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028356 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|...--.|-|..++..+... ++ . ..=......+|++-|.+
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~--~-----n~lqia~r~riKlFyRP 117 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG--E-----NYLQFAIVSRIKLLYRP 117 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEEC
T ss_pred CceEEEEEEeecCCCCcccc-cC--C-----ceEEEEhhheeeEEEec
Confidence 63333344444444322110 00 0 01123467889998883
No 20
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=88.95 E-value=2.2 Score=31.45 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCcEEEe-CCCeeeCCCCEEEEEEEeccC
Q 028356 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-PNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr-P~~GiI~P~~s~~V~Vtlq~~ 74 (210)
-.+.|+|.|++.++..|.++-.....+.+. |..=.|.||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 458999999999999999998775446554 554578899988888887654
No 21
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=88.28 E-value=9.9 Score=31.46 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=65.3
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEEE--eecC----CCcEEEeCCCeeeCCCCEEEEEEEeccCccCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKV--KTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFKV--KTT~----P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~ 79 (210)
+.++...+.|+.. .....|+|+|.++. ++.-.+ .... ..-|.|-|+.-.|+||+...|.|..... .+|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4566678888864 34589999999875 443222 2211 2249999999999999999999987753 3565
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028356 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 80 ~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|.. .-|-+....+|+.... ..=......+|++-|.+
T Consensus 78 DRE--Slf~lnv~eIPp~~~~----------n~Lqiair~rIKLFyRP 113 (224)
T 3gfu_C 78 DKE--SVYWLNLQDIPPALEG----------SGIAVALRTKLKLFYRP 113 (224)
T ss_dssp SSC--EEEEEEEEEECCCCSS----------SBCCEEEEEEEEEEEEC
T ss_pred Cce--EEEEEEeecCCCCCCC----------CeEEEEEEEEeeEEEcc
Confidence 533 3344444444442110 01123456778887773
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.52 E-value=1.4 Score=31.19 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=18.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+++.+...+.+....+...|..+.++|++|++|.
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444444444555555555666666676664
No 23
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=81.91 E-value=5.4 Score=36.05 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=47.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEE--------------------E-eCCCeeeCCCCEE
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYC--------------------V-RPNTGIVLPRSTC 65 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~--------------------V-rP~~GiI~P~~s~ 65 (210)
+.++-..-+|.- .++...-.|+++|+++++|-+.==+|+.-+|. + .|+ -|.||++.
T Consensus 284 V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETr 360 (419)
T 3rfr_A 284 VTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESK 360 (419)
T ss_dssp CEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEE
T ss_pred eEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcce
Confidence 444444456664 47888999999999999998886666666654 1 223 59999999
Q ss_pred EEEEEecc
Q 028356 66 DIIVTMQA 73 (210)
Q Consensus 66 ~V~Vtlq~ 73 (210)
+|+|+.+.
T Consensus 361 t~~V~a~d 368 (419)
T 3rfr_A 361 EIVVKIQD 368 (419)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeeh
Confidence 99999885
No 24
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=80.03 E-value=13 Score=33.21 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=47.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEE----------------------EeCCCeeeCCCCE
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYC----------------------VRPNTGIVLPRST 64 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~----------------------VrP~~GiI~P~~s 64 (210)
+.++-..-.|.- .++...-.++++|+++.+|-..==+|+.-+|. |.|+ .-|.||++
T Consensus 250 V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PGET 327 (382)
T 1yew_A 250 VSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPGET 327 (382)
T ss_dssp EEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTTCE
T ss_pred eEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCCce
Confidence 344444455554 47888999999999999999886677666663 2232 34899999
Q ss_pred EEEEEEecc
Q 028356 65 CDIIVTMQA 73 (210)
Q Consensus 65 ~~V~Vtlq~ 73 (210)
.+|.|+.+.
T Consensus 328 r~~~v~a~d 336 (382)
T 1yew_A 328 RTVDVTASD 336 (382)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEeeh
Confidence 999999885
No 25
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=75.26 E-value=5.7 Score=29.67 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=43.9
Q ss_pred eeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCC--CCEEEEEEEeccCccCCCCCCCCCeEEEEEEe
Q 028356 23 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLP--RSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVK 93 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P--~~s~~V~Vtlq~~~~~p~~~~~kDKFlVqs~~ 93 (210)
...-.++.+|.+..+| -|.+..-.|+-|.++ |..| .|.| +..++=.+.+.... ....+=|+.|.+..
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~ 102 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNW 102 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEE
Confidence 3566788889987666 788888899987766 7776 6888 65555444443321 11345566666654
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.73 E-value=5.2 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=23.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+..+..++......|++-.+.+..+|+-|||=|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 334455666677777777777778888888854
No 27
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=74.69 E-value=2.3 Score=24.34 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 028356 185 SKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 185 ~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++|+||...+..-.++||+-++|
T Consensus 2 srlee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666554
No 28
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.45 E-value=3.8 Score=28.26 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+..+..+|..|.++...+.+++..|++|
T Consensus 52 L~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 52 LDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999999999987
No 29
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.87 E-value=5.6 Score=27.65 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.++..+|..|..+...|.+++..|++++.
T Consensus 45 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 45 LRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999998765
No 30
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=71.37 E-value=4.1 Score=27.13 Aligned_cols=32 Identities=6% Similarity=0.117 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
....++...+..|+.|...|..++..|++++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45668888888888888889889888888764
No 31
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=71.29 E-value=9.4 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 181 RALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+..+.....+++.+..||..|++++-|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 346677888899999999999998744
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.25 E-value=6.3 Score=27.76 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=28.2
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.+..+...+...|.-|..|...|.++|..|.+|.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999998877764
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.05 E-value=7 Score=26.67 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHhhhhhh-----hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 163 AARAFTERI-----EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 163 ~~~~~~~~~-----~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+-+.|.++. ++..+..++......|..|...|++++..|+.|+.
T Consensus 19 AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 19 AQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555432 23333444444444445555555556666666654
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.07 E-value=7 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
...++...-..|..|...|.+++..|++.|
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444443
No 35
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=67.77 E-value=9.3 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+...+..|..|.+.+.++|..|+++|..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556777777777777777643
No 36
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=67.54 E-value=9.5 Score=26.28 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+..+..+|..|.++...+.++...|++|...
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999988653
No 37
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=66.33 E-value=10 Score=26.27 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+.....+|..|+..+..++..|+++|.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555566666666666654
No 38
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.19 E-value=9 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
....++...+..|+.|...|..+...|+.|+.+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777653
No 39
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=66.12 E-value=13 Score=28.46 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=41.1
Q ss_pred eeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCC--EEEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028356 24 ISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRS--TCDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 24 ~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~--s~~V~Vtlq~~~~~p~~~~~kDKFlVqs~~~ 94 (210)
..-.++.+|.+..+| -|.+.--.|+-|.++ |..| .|.|+. .++-.+.+..... .+.+=|+.|.+..-
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~----~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 121 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCEEEEEEEEET
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 556778899887655 788888889987776 6666 577733 3443343332111 12455666666553
No 40
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=65.87 E-value=6.4 Score=25.43 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
..++...+..|+.|-..|.+++..|++++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777776654
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.58 E-value=9.5 Score=24.86 Aligned_cols=33 Identities=9% Similarity=-0.009 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
....++...+..|+.+...|..+...|+.|+.+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888764
No 42
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=65.11 E-value=16 Score=28.02 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=41.1
Q ss_pred eeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCC--EEEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028356 24 ISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRS--TCDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 24 ~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~--s~~V~Vtlq~~~~~p~~~~~kDKFlVqs~~~ 94 (210)
..-.++.+|.+..+| -|.+.--.|+-|.++ |..| .|.|+. .++-.+.+..... .+.+=|+.|.+..-
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~----~~lklR~klsY~~~ 127 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 127 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCCEEEEEEEET
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 555678899887655 788888889987776 6666 577743 3333333332111 13456677766553
No 43
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=64.57 E-value=11 Score=24.18 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=27.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++.....+.+.=.+|.+-...+++|..+|++|++.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667778888999999999999999875
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.39 E-value=8.1 Score=29.63 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.++.++.+.+.+|.+|.+.+..++.+|+.||..
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666677777777777777666653
No 45
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=64.36 E-value=22 Score=26.64 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCCeeeEEEEEEeCCCCe-EEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCCCCeEEEEEEecCCC
Q 028356 20 LKKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDG 97 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~-VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~kDKFlVqs~~~~~~ 97 (210)
.++.+...++++|.+... =+|+|+-...+...-.-..+ |.||++.+|.++..+.. ...+.|..++-+.+
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 367788999999998755 58999876666655443334 99999999999886531 24566766666554
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.60 E-value=11 Score=24.95 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
....++...+..|+.+...|..+...|+.|+.+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777776543
No 47
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.84 E-value=14 Score=23.83 Aligned_cols=29 Identities=7% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.|.-+.+..+.++...+.++|..|++++.
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666654
No 48
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.44 E-value=13 Score=25.72 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.+|..+|..|+++...+.+++..|+.|..
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999988754
No 49
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.78 E-value=9.1 Score=27.94 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 181 RALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
-+.|..|..|...|+.+|+.|++|-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888887643
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.56 E-value=14 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+..+...|..|+.|++.|++++..|.-+|+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999998888876
No 51
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=60.62 E-value=14 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 182 ALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+++..|+.+...|..+|..|++++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998863
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.88 E-value=14 Score=24.32 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..++...+..|+.+...|..+...|++|+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666665543
No 53
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=57.94 E-value=9.3 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=24.1
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+-++=++++...+..|..|...|.+++..|+++|
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445567888889999999999999999998764
No 54
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.22 E-value=6.2 Score=33.45 Aligned_cols=34 Identities=26% Similarity=0.171 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.....+.+...+|.++.+.+++|+.+|++|+++
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677788888888888888888865
No 55
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.05 E-value=19 Score=25.30 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 180 ARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+......|..+.+.+.++|+.|+++|.
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556667778888888765
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=55.78 E-value=16 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=26.8
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.-+.+..++...+..|+.|-..|..++..|++|+.+
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677778888888888888888888888753
No 57
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=55.43 E-value=28 Score=20.34 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+.++...+..|-.|...|..+..+||.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455666777777777777777777764
No 58
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=55.39 E-value=33 Score=26.65 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=49.0
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEE-EEeccCccCCCCCCCCCeEEEEEEecCC
Q 028356 25 SCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDII-VTMQAQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 25 ~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~-Vtlq~~~~~p~~~~~kDKFlVqs~~~~~ 96 (210)
...+-|.|.|+.++.|-.-+..-+.+.++ ..|.|.|+.++.|. +.+... ..--+|.||.+....
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~ 93 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKD 93 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcC
Confidence 45788999999999999988888888777 68999999888774 333322 234678888877765
No 59
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.34 E-value=30 Score=20.48 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+.++...+..|-.+...|-.+..+||..|
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44666777777778888888888887765
No 60
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.31 E-value=14 Score=25.07 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.++...|..|+.+...+..+|..|++++..
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888888887754
No 61
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=54.30 E-value=24 Score=22.49 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLWTGL 209 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
...++.+.|-.|+++.......+..++++|+.-+
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567888888999999888999999999998754
No 62
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=53.80 E-value=13 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028356 180 ARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
+...+..|-.|...|..+..+|+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444444444
No 63
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.90 E-value=20 Score=24.85 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=28.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.-+.+..++...+..|+.|-..|..++..|++|+.+
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888888888999999888888754
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.79 E-value=28 Score=22.26 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+..+......|..+...|.+++..|+.+|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455667777777777777788888877753
No 65
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=52.05 E-value=25 Score=20.47 Aligned_cols=24 Identities=0% Similarity=0.113 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
++...+..|-.+...|..|..+||
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344455555555555555555554
No 66
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=51.46 E-value=24 Score=19.93 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028356 184 ISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+..|++|...+..+|-+|.||..
T Consensus 3 vaqlekevaqaeaenyqleqeva 25 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVA 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566777777777777777753
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.82 E-value=22 Score=25.85 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 181 RALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
...+.+|.++.+.|..++.+|+++.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888888888764
No 68
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=50.80 E-value=18 Score=27.81 Aligned_cols=35 Identities=6% Similarity=0.115 Sum_probs=28.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++.+..++...|.+|.+|...+..++.+|++++..
T Consensus 23 Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 23 LRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp TTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444588899999999999999999999988753
No 69
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=50.61 E-value=40 Score=25.13 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=29.2
Q ss_pred CCCCCc-eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEe
Q 028356 1 MSTGEL-LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVR 53 (210)
Q Consensus 1 m~~~~l-L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr 53 (210)
|..|.| +.|+|.. .+....-.|+|+|.++.++-+-..+.--=.|.|+
T Consensus 2 ~~~~~l~~~v~~~~------~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~ 49 (120)
T 3isy_A 2 MENQEVVLSIDAIQ------EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVY 49 (120)
T ss_dssp --CCSEEEEEEEEE------CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEE
T ss_pred ccccEEEEEEeecc------CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEE
Confidence 444444 5566554 3457788999999999999887765322244444
No 70
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.60 E-value=28 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
.|...+|++|.++..+|.++..+|
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888887776654
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.93 E-value=8.1 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=23.0
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.++.....++...-..|..+...|.+++..|++.|.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777777777777777777654
No 72
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=49.62 E-value=25 Score=20.56 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028356 188 KDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 188 ~~E~~~~~~~~~~L~~el~ 206 (210)
++.-..++.+|..|++|+.
T Consensus 7 EdKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3333344444444444443
No 73
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.25 E-value=29 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 184 ISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+.|++--..|.++|..|+.|..+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 356777778888888888888765
No 74
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.77 E-value=28 Score=24.34 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+.+|..+|..|+++...+.++...|+++-
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n 75 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888887777764
No 75
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.44 E-value=26 Score=24.64 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
++-..|..|.+|...+.++|..|+.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888774
No 76
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=47.38 E-value=75 Score=22.70 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=42.4
Q ss_pred eeeEecc--CCCeeeEEEEEEeCCC---CeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCc
Q 028356 13 ELKFPFE--LKKQISCSLQLSNKTD---NYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 13 eL~F~~~--~~k~~~~~l~L~N~s~---~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~ 75 (210)
.+....+ .++...+.++++|+-+ ..+.|.|--..-.+=... ..|-|.||+++.+.+.+.|..
T Consensus 9 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 9 SLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp EEEESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCS
T ss_pred EEEECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCc
Confidence 3444443 4678899999999966 555788764433222111 237799999999999999864
No 77
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=47.01 E-value=37 Score=22.02 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 181 RALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+..+-.|..|.+.|.++|++|++-|+
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665443
No 78
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=46.29 E-value=28 Score=30.39 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCCCCCCeEEEEEEecCC
Q 028356 26 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~~~kDKFlVqs~~~~~ 96 (210)
-.+.|+|.++- -|.++-+.+..|.+.+..=-|+|+++.++.|.+.... + ...=+|-|.-+.+-+
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~ 333 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGI--K---GGDVNFEVTNFIVAP 333 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTC--C---CCEEEEEEEEEEEET
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEeccccc--c---ceEEEEEeeeeeecC
Confidence 58888998875 5778889999999999999999999999998876432 1 234567666554433
No 79
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=46.28 E-value=34 Score=24.76 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=30.7
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 169 ~~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+-.+++..+.++.....+-.+..+.+.+-++.|||||..
T Consensus 58 EqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 58 EQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666677788888888888888999999999999854
No 80
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=46.00 E-value=20 Score=28.96 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
=+...+..|.++...+.++|++|++|..
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666654
No 81
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.77 E-value=11 Score=28.26 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=29.9
Q ss_pred eeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCCE
Q 028356 23 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRST 64 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~s 64 (210)
...-.++.+|.+..+| -|.+.--.|+-|.++ |..| .|.|+..
T Consensus 39 ~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 39 LLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTC
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCC
Confidence 3556778899987655 788888888876655 6656 5878554
No 82
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=42.85 E-value=42 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.262 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+..+.+...|..|.+..+.|..||.-||+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888888888888875
No 83
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=42.48 E-value=28 Score=27.85 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWTG 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
....++.+.|..|+++.....+++..+++||+..
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999764
No 84
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=42.46 E-value=38 Score=26.16 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=38.9
Q ss_pred EEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCCE------EEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028356 26 CSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRST------CDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 26 ~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~s------~~V~Vtlq~~~~~p~~~~~kDKFlVqs~~~ 94 (210)
-.++.+|.+..+| -|.+..-.|+-|.++ |..| .|.|+.. ++-.+.+..... ...+=|+.|.+..-
T Consensus 57 i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~n~~~----~~l~LR~klsY~~~ 131 (153)
T 1p4u_A 57 VVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPLK----EKVRLRYKLTFALG 131 (153)
T ss_dssp EEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEECTTC----CCCCEEEEEEEEET
T ss_pred EEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 3667789887655 788888888877776 6556 4667543 443443332211 13455666666553
No 85
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=41.51 E-value=42 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.++...+.++.++...+.++.+.|+.||.+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788888888899999999999875
No 86
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=41.33 E-value=50 Score=24.51 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=29.4
Q ss_pred EEEEEEeCCCCeEE---EEEeecCCC---cEEEeCCCeeeCCCCEEEE
Q 028356 26 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGIVLPRSTCDI 67 (210)
Q Consensus 26 ~~l~L~N~s~~~Va---FKVKTT~P~---~Y~VrP~~GiI~P~~s~~V 67 (210)
..++|.|++++.+. |+++-...+ .| .-|..=+|.||.+++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y-~Fp~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSY-KYTSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEE-ECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEE-EcCCCcEECCCCEEEE
Confidence 47899999987774 788755443 34 4466669999988664
No 87
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.90 E-value=43 Score=21.84 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=22.4
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++......+...-..|..|...|.++...|++-|.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666677777777777777766553
No 88
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=40.89 E-value=76 Score=20.92 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.+..++.+.=..|.+|..-+....++||.|-
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 3455555555666666666666666666653
No 89
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.34 E-value=47 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 181 RALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+.+..|+.+...|..+|..|+.|+..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999998764
No 90
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=38.69 E-value=57 Score=18.89 Aligned_cols=26 Identities=4% Similarity=0.009 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.++...|..|..+...+..|..+|+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556666666666666666666654
No 91
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=38.52 E-value=48 Score=19.37 Aligned_cols=25 Identities=0% Similarity=0.181 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.++...+..|-.+...+..+..+||
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3444555555555555555555554
No 92
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=38.52 E-value=35 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
++-..|..+.+|+..+.++|..|+.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888764
No 93
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=38.06 E-value=1.4e+02 Score=27.82 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=38.4
Q ss_pred eeeEEEEEEeCCCCeEEEEEeecCCCc--EEEeCCCeee-CCCCEEEEEEEecc
Q 028356 23 QISCSLQLSNKTDNYVAFKVKTTNPKK--YCVRPNTGIV-LPRSTCDIIVTMQA 73 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~VaFKVKTT~P~~--Y~VrP~~GiI-~P~~s~~V~Vtlq~ 73 (210)
..+..-+++|.+...-.|+++.+.|.- -.|.|..=.+ ..+++..++|++..
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 344556899999999999999988874 4566876655 46788888888764
No 94
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.26 E-value=58 Score=23.15 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++......|..|+..+.+++..+++|++
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555444443
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.94 E-value=52 Score=23.42 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028356 183 LISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.+..|+.|...+..|...|++|+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444
No 96
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=35.18 E-value=59 Score=24.10 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.8
Q ss_pred EEEEEEeCCCCeE---EEEEeecC---CCcEEEeCCCeeeCCCCEEE
Q 028356 26 CSLQLSNKTDNYV---AFKVKTTN---PKKYCVRPNTGIVLPRSTCD 66 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~---P~~Y~VrP~~GiI~P~~s~~ 66 (210)
..++|.|.+++.+ .|+++-.. +..-+.-|..=+|.||.+++
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vt 65 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT 65 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEE
Confidence 4789999988766 47877552 22344467777899999765
No 97
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=34.74 E-value=42 Score=28.11 Aligned_cols=52 Identities=17% Similarity=0.385 Sum_probs=35.6
Q ss_pred CCeeeEEEEEEeCCCCeE-EEEEeecCCCcEEEeCC----C-eeeCCCCEEEEEEEecc
Q 028356 21 KKQISCSLQLSNKTDNYV-AFKVKTTNPKKYCVRPN----T-GIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~VrP~----~-GiI~P~~s~~V~Vtlq~ 73 (210)
+.++.-.|+++|.+..++ -|.|+- +.+.|-+-|. . .-|.||+++++.|-+..
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQf-NkNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~~ 111 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQF-NKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNT 111 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEE-CCBTTCCEESSCCCCCSCBCTTCEEEEEEEEES
T ss_pred CCEEEEEEEEecCCccceeeeEEEE-cccccCcccCccccCCCccCCCCcEEEEEeeec
Confidence 457788999999998765 444443 2333433442 2 45999999999998764
No 98
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=34.33 E-value=43 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=28.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTG 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+..|--..+.|-.|+++.....+++..++++|+..
T Consensus 36 ~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 36 RVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455667789999999999999999999998764
No 99
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.21 E-value=66 Score=20.50 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+..++...|..|..+.+.++.+.+.-+.|-.|
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777655
No 100
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.17 E-value=74 Score=18.52 Aligned_cols=27 Identities=0% Similarity=0.019 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+.++...+..|-.+...|..+..+||.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344555566666666666666666554
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.05 E-value=66 Score=20.42 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=14.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQN 198 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~ 198 (210)
++...+++.+.+..|+++...+..+.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666665555443
No 102
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=32.73 E-value=69 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.++.+.+-.|+.|+..+..++..+++=
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356677777888888888777777664
No 103
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.57 E-value=55 Score=23.08 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+.+.+.|..|.+++..+.++...++.+|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777777777777777766554
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.11 E-value=65 Score=21.00 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=22.9
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.++.....++...-..|..+...|..++..|++-|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666677777777777777777776644
No 105
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.10 E-value=65 Score=21.91 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..++.++.....++.+|..++...++.|..+|++
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777777777664
No 106
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.99 E-value=64 Score=17.42 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028356 189 DEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 189 ~E~~~~~~~~~~L~~el~ 206 (210)
.|...+.+..++||..|-
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444555566666554
No 107
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.95 E-value=84 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.++...|..|..|...|+.+++.++.++.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35555666666666666666666665554
No 108
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.53 E-value=54 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
..-....|..|+.+...|.+||++|++|
T Consensus 156 i~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 156 ICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455668888888888888999999887
No 109
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.15 E-value=56 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.+.++.+.+..|++|-+.|.++-.+.+++|++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457788889999999999999999998888864
No 110
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=31.13 E-value=90 Score=19.81 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.++...|.+++.|...++.....+|+.
T Consensus 11 i~Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 11 IAAQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778999999999999998888874
No 111
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=30.67 E-value=61 Score=24.86 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=28.8
Q ss_pred EEEEEEeCCCCeE---EEEEeecCCCc--EEEeCCCeeeCCCCEEEE
Q 028356 26 CSLQLSNKTDNYV---AFKVKTTNPKK--YCVRPNTGIVLPRSTCDI 67 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~P~~--Y~VrP~~GiI~P~~s~~V 67 (210)
..++|.|++++.+ .|+|+=...+. .+.-|..=+|.||.+++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 4789999998777 46776443322 245566669999988664
No 112
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=30.28 E-value=64 Score=23.88 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=37.8
Q ss_pred CceEEeCCeeeEeccCCCeeeEEEEEEeCCCCe-----EEEEEeecC-------------C-CcEE------EeCCCeee
Q 028356 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------P-KKYC------VRPNTGIV 59 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~-----VaFKVKTT~-------------P-~~Y~------VrP~~GiI 59 (210)
+-+.++|.+|..+.. ...-.|+++|....+ --|-+-+.. + ..|. +--..++|
T Consensus 10 d~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 86 (128)
T 2iaa_C 10 DSMQFNTKSIVVDKT---CKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVI 86 (128)
T ss_dssp TTSCBSCSEEEECTT---CSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CCceEecCEEEEecC---CcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceee
Confidence 345677777776432 234589999998643 344444321 0 0111 11125678
Q ss_pred CCCCEEEEEEEe
Q 028356 60 LPRSTCDIIVTM 71 (210)
Q Consensus 60 ~P~~s~~V~Vtl 71 (210)
.||++..|+++.
T Consensus 87 ~pGes~~vtf~~ 98 (128)
T 2iaa_C 87 GGGETDSVTFDV 98 (128)
T ss_dssp CTTCEEEEEEES
T ss_pred CCCCEEEEEEec
Confidence 999999999875
No 113
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.11 E-value=97 Score=18.94 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+|+.+.|.++-.|.....++...||..
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777666653
No 114
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=30.03 E-value=2e+02 Score=22.52 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=39.4
Q ss_pred eeeEEEEEEeCCCC-----eEEEEEeecCCCc-EEEeCCCeeeCCCCEEEEEEEecc
Q 028356 23 QISCSLQLSNKTDN-----YVAFKVKTTNPKK-YCVRPNTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 23 ~~~~~l~L~N~s~~-----~VaFKVKTT~P~~-Y~VrP~~GiI~P~~s~~V~Vtlq~ 73 (210)
.....|+|+|+.+. -++|.++...-.. --+-|..|.|.++++..|.|-+.-
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 35689999999774 4699999765443 467799999999999888876653
No 115
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.01 E-value=79 Score=20.85 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.-+.-..+.|..|.+=.+++.++.+.||.++.
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq 51 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIH 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 333445556777777777777777777777664
No 116
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=29.91 E-value=38 Score=25.21 Aligned_cols=64 Identities=8% Similarity=0.054 Sum_probs=37.7
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCe-----EEEEEeecC-------------CC-cEE------EeCCCeeeC
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------PK-KYC------VRPNTGIVL 60 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~-----VaFKVKTT~-------------P~-~Y~------VrP~~GiI~ 60 (210)
-+.++|.+|..+.+ ...-.|+|+|...-+ --|-|-+.. +. .|. +--...+|.
T Consensus 12 ~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 12 AMQYNVKEIVVDKS---CKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp TSCBSCSEEEECTT---CSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecceEEEecC---CCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 45667777776332 234589999998653 445554432 00 110 111246789
Q ss_pred CCCEEEEEEEec
Q 028356 61 PRSTCDIIVTMQ 72 (210)
Q Consensus 61 P~~s~~V~Vtlq 72 (210)
||++..|+++..
T Consensus 89 pGet~svtf~~~ 100 (129)
T 2ccw_A 89 GGESDSVTFDVS 100 (129)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999988763
No 117
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=29.88 E-value=76 Score=22.98 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+...+.+.+..|.++.+.|-+..+.+++.|
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777666666665
No 118
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=29.83 E-value=1.3e+02 Score=20.40 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=32.5
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEe
Q 028356 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 8 ~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtl 71 (210)
.++|++|+.+.- .+-.+.++|....+-.|-+.... ..+.+.||++..+.++.
T Consensus 24 ~F~P~~i~v~~G----~tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 24 YFNPNVITIPIN----ESTTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EEESSEEEECTT----SCEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EEeCCEEEECCC----CEEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 356666665432 34567778887666666654322 13568899988887764
No 119
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=29.79 E-value=45 Score=21.83 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=16.5
Q ss_pred EEEEEeCCCCeEEEEEeecCC
Q 028356 27 SLQLSNKTDNYVAFKVKTTNP 47 (210)
Q Consensus 27 ~l~L~N~s~~~VaFKVKTT~P 47 (210)
.|++...+...|.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 567777777888999987766
No 120
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.09 E-value=1e+02 Score=22.44 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=12.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
..+++.+|+=....|-.|+.++.=|+.-|+
T Consensus 7 vEEKyrKAMVsnAQLDNEKsal~YqVdlLK 36 (103)
T 4h22_A 7 VEEKYKKAMVSNAQLDNEKTNFMYQVDTLK 36 (103)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444444443333333
No 121
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.06 E-value=73 Score=24.27 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=29.8
Q ss_pred EEEEEEeCCCCeE---EEEEeecCCC---cEEEeCCCeeeCCCCEEEE
Q 028356 26 CSLQLSNKTDNYV---AFKVKTTNPK---KYCVRPNTGIVLPRSTCDI 67 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~P~---~Y~VrP~~GiI~P~~s~~V 67 (210)
..|+|.|.+++.+ .|+|+=...+ .-+.-|..=+|.||.+++|
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 5799999998776 4788765332 2344577778999997653
No 122
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.05 E-value=92 Score=18.35 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+.++...+..|-.+...|..+..+||.=
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4456666777777777777777777653
No 123
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.88 E-value=88 Score=21.32 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 181 RALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
...|..|+.+....-.+++.||-||+.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888899988864
No 124
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.83 E-value=62 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
++-..|..|.+|...+.++|..|+.
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888875
No 125
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=27.99 E-value=91 Score=18.41 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
++-..|..-.+|+.+|.++|..|+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334455556677777777777775
No 126
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.92 E-value=1.1e+02 Score=21.97 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 028356 192 NNAVQQNNKLRQDLW 206 (210)
Q Consensus 192 ~~~~~~~~~L~~el~ 206 (210)
..+-.++.++.+||+
T Consensus 43 ~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 43 TKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456666666665
No 127
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=26.89 E-value=1.3e+02 Score=29.74 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=35.1
Q ss_pred eeEEEEEEeCC------CCeEE--------------EEEeecCCCcEEEeCCCee--eCCCCEEEEEEEec
Q 028356 24 ISCSLQLSNKT------DNYVA--------------FKVKTTNPKKYCVRPNTGI--VLPRSTCDIIVTMQ 72 (210)
Q Consensus 24 ~~~~l~L~N~s------~~~Va--------------FKVKTT~P~~Y~VrP~~Gi--I~P~~s~~V~Vtlq 72 (210)
....|+|+|.+ +=.|. |+|..-+-..|.+.|.-++ |.||+++.|.++..
T Consensus 40 ~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~~ 110 (858)
T 1c7s_A 40 NRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVAE 110 (858)
T ss_dssp EEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEec
Confidence 45688888882 22233 4555556666888899887 99999999999754
No 128
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=26.05 E-value=1.9e+02 Score=21.09 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=35.4
Q ss_pred CeeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCC--CEEEEEEEe
Q 028356 22 KQISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPR--STCDIIVTM 71 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~--~s~~V~Vtl 71 (210)
....-.+..+|.+..+| -|.+..-.|+-|.++ |..| .|.|+ ..++=.+.+
T Consensus 31 ~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 31 SVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE
T ss_pred CeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE
Confidence 34566778889988766 799999999987766 7677 68887 444433333
No 129
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.89 E-value=74 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 179 EARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++-..|..+.+|...+.++|..|+.=
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777778888888888777653
No 130
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=25.87 E-value=61 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEEEEEeCCCCeEEEEEeecCC
Q 028356 26 CSLQLSNKTDNYVAFKVKTTNP 47 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P 47 (210)
-.|++...+...|.|||+.|.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4677887777889999988776
No 131
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.13 E-value=1.1e+02 Score=17.83 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.++...+..|-.+...|-.+..+||.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45556666666666666666666664
No 132
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.73 E-value=60 Score=17.67 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 028356 194 AVQQNNKLRQDL 205 (210)
Q Consensus 194 ~~~~~~~L~~el 205 (210)
+.|.|.+|+||+
T Consensus 5 lkqknarlkqei 16 (28)
T 3ra3_B 5 LKQKNARLKQEI 16 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhhhHHHHHH
Confidence 445555555554
No 133
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.66 E-value=88 Score=22.09 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=25.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+..+...+...|.+|++....+..+..+|+.+|-.
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888888888888888888877643
No 134
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.62 E-value=1.3e+02 Score=21.32 Aligned_cols=30 Identities=3% Similarity=0.081 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
-.++.+.+..|..|+..+-.+...++.|+.
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777776654
No 135
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=24.55 E-value=2e+02 Score=20.62 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=34.4
Q ss_pred CeeeEEEEEEeCCCCeEE-EEEeec-----------------CCCcEEEeCC--CeeeCC-CCEEEEEEEec
Q 028356 22 KQISCSLQLSNKTDNYVA-FKVKTT-----------------NPKKYCVRPN--TGIVLP-RSTCDIIVTMQ 72 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~Va-FKVKTT-----------------~P~~Y~VrP~--~GiI~P-~~s~~V~Vtlq 72 (210)
......++|+|.++.+|- ++|.=+ +-..|.|+|. .|-|.| |.++.+-+.-.
T Consensus 15 ~Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 15 SGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp SEEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred CCEEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 445678999998876653 333322 2367899875 589999 98877665543
No 136
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.40 E-value=1.1e+02 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 183 LISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.|..|+.+.+....+++.||.+|+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666677777776654
No 137
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=24.40 E-value=59 Score=23.77 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=35.5
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEe--CCCCeEEEEEeecC--------------------C--CcEEEeCCCeeeCCC
Q 028356 7 LSIEPLELKFPFELKKQISCSLQLSN--KTDNYVAFKVKTTN--------------------P--KKYCVRPNTGIVLPR 62 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N--~s~~~VaFKVKTT~--------------------P--~~Y~VrP~~GiI~P~ 62 (210)
+.++|..|++.. ..+-.|+++| .+...--|-+.... | +...+......|.||
T Consensus 28 ~~F~P~~i~v~~----G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG 103 (140)
T 1qhq_A 28 LAFAQTSLSLPA----NTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAG 103 (140)
T ss_dssp SSBSCSEEEEET----TCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTT
T ss_pred ceEeCCeEEECC----CCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCC
Confidence 445666666553 2346778889 44444444443211 0 112233445788999
Q ss_pred CEEEEEEEec
Q 028356 63 STCDIIVTMQ 72 (210)
Q Consensus 63 ~s~~V~Vtlq 72 (210)
++..+++++.
T Consensus 104 ~~~~~~~~~~ 113 (140)
T 1qhq_A 104 ESGSVTFRTP 113 (140)
T ss_dssp EEEEEEEECC
T ss_pred ceeEEEEEeC
Confidence 9999998873
No 138
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.05 E-value=36 Score=20.07 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
...+...|..|..+.+.+.++...|+.+|
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788899999999988888888887
No 139
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=24.01 E-value=93 Score=21.76 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
..+..+|..|..|...+.++..++++
T Consensus 35 ~ksvdYI~~Lq~e~~r~~e~e~r~k~ 60 (83)
T 4ath_A 35 KASVDYIRKLQREQQRAKDLENRQKK 60 (83)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888777776665443
No 140
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=23.87 E-value=3.2e+02 Score=25.63 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=39.3
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCcEE--EeCCCeee-CCCCEEEEEEEeccC
Q 028356 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYC--VRPNTGIV-LPRSTCDIIVTMQAQ 74 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~Y~--VrP~~GiI-~P~~s~~V~Vtlq~~ 74 (210)
.+..-+++|.++..-.|+++-+.|.-.. |.|..=.. ..+++....|++.+.
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 5678889999988888999999998766 45888766 489999999988753
No 141
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.82 E-value=1.3e+02 Score=19.06 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++.++...|..|....+.|..+...|+-+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 142
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.81 E-value=1.2e+02 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028356 181 RALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L 201 (210)
...+++|+.|-..+.+-...|
T Consensus 30 S~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 30 SNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHH
Confidence 344455555544444444433
No 143
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.78 E-value=76 Score=26.72 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=25.1
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.+..+...+.+.+..+..|...|.+|+++|++
T Consensus 65 ~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 65 SLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666788888888888888888888874
No 144
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.44 E-value=1.3e+02 Score=21.26 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..+..++.....++.+|..+|...++.|..||+.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777777777764
No 145
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.31 E-value=1.3e+02 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.++...++.|..|...++..+..|+.-
T Consensus 31 ~e~~~~~~~Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 31 AQSYKQVSVLEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888777653
No 146
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=23.30 E-value=1.6e+02 Score=22.25 Aligned_cols=32 Identities=38% Similarity=0.270 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+++.-+.+++..|+.+.+.+.+|..+|++|..
T Consensus 98 d~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 98 DKLTALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999998754
No 147
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.29 E-value=1.5e+02 Score=20.67 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028356 177 STEARALISKLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.++...-.+|-++...+.+++..|++|+..
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777653
No 148
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.28 E-value=80 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028356 186 KLKDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++.+|+..|.+|+..||.++.|
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHh
Confidence 4555555666666666666544
No 149
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.19 E-value=95 Score=22.88 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 178 TEARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
.++...|+.|+-|..++..++..|
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444444433
No 150
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.12 E-value=82 Score=22.74 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028356 181 RALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L 201 (210)
.+.+..|.+|...+.+++++|
T Consensus 13 ~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 13 EDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443343333
No 151
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.87 E-value=1.4e+02 Score=20.21 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=5.0
Q ss_pred chHHHHHHHHHHH
Q 028356 176 KSTEARALISKLK 188 (210)
Q Consensus 176 ~~~e~~~~i~~l~ 188 (210)
+..++...+.++.
T Consensus 19 klk~~~ee~~~~~ 31 (71)
T 1uix_A 19 KLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 152
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=22.72 E-value=1.3e+02 Score=23.12 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=28.4
Q ss_pred EEEEEEeCCCCeE---EEEEeec-C--CCcEEEeCCCeeeCCCCEEE
Q 028356 26 CSLQLSNKTDNYV---AFKVKTT-N--PKKYCVRPNTGIVLPRSTCD 66 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT-~--P~~Y~VrP~~GiI~P~~s~~ 66 (210)
..|+|.|.+++.+ .|+|+=. . +..-+.-|..=+|.||.+++
T Consensus 50 efV~L~N~s~~~~~L~GW~L~r~vdg~~~~~y~Fp~~~~L~pg~tVt 96 (151)
T 1ufg_A 50 KFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVT 96 (151)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCCEEEECCTTCEECTTCEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEE
Confidence 4789999988766 4788643 2 22344467777899999765
No 153
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=22.10 E-value=72 Score=23.60 Aligned_cols=65 Identities=8% Similarity=0.117 Sum_probs=37.7
Q ss_pred CceEEeCCeeeEeccCCCeeeEEEEEEeCCCCe-----EEEEEeecC-------------CC-cE------EEeCCCeee
Q 028356 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------PK-KY------CVRPNTGIV 59 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~-----VaFKVKTT~-------------P~-~Y------~VrP~~GiI 59 (210)
+-+.++|.+|..+.. ...-.|+++|....+ --|-+-+.. +. .| .|--..++|
T Consensus 11 d~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 87 (128)
T 1nwp_A 11 DQMSFNTKDIAIDKS---CKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVI 87 (128)
T ss_dssp TTSCBSCSEEEECTT---CSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCB
T ss_pred CCccEecCEEEEecC---CCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeee
Confidence 345677887776322 234579999997643 444443321 00 01 011124579
Q ss_pred CCCCEEEEEEEec
Q 028356 60 LPRSTCDIIVTMQ 72 (210)
Q Consensus 60 ~P~~s~~V~Vtlq 72 (210)
.||++..|+++..
T Consensus 88 ~pGet~svtf~~~ 100 (128)
T 1nwp_A 88 GAGEKDSVTFDVS 100 (128)
T ss_dssp CTTCEEEEEEEGG
T ss_pred CCCCEEEEEEecc
Confidence 9999999998863
No 154
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=22.02 E-value=1.1e+02 Score=21.61 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=20.1
Q ss_pred CCeeeEEEEEEeCCC-CeEEEEEeecCC
Q 028356 21 KKQISCSLQLSNKTD-NYVAFKVKTTNP 47 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~-~~VaFKVKTT~P 47 (210)
.....-.|++..... ..|-||||.|.|
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~ 48 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSP 48 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSC
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCCh
Confidence 344567888888766 589999987776
No 155
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.94 E-value=1.1e+02 Score=19.31 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028356 183 LISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el 205 (210)
++..|+++...|.+++..|+..|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777776654
No 156
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=21.89 E-value=1.4e+02 Score=23.72 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=27.8
Q ss_pred EEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEE
Q 028356 27 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~V 69 (210)
.|++.|+|..+|.|-=-+.+-+.+ . .+.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999885322233333 2 37999999988764
No 157
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=21.62 E-value=1.3e+02 Score=19.60 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=29.7
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEE
Q 028356 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~V 69 (210)
-+.++|..|.+..- ..+++.|.+...-.|-+....+... ..+.+.||++..+++
T Consensus 13 ~~~f~P~~i~v~~G------d~V~~~n~~~~~H~v~~~~~~~~~~----~~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 13 MLAFEPSTIEIQAG------DTVQWVNNKLAPHNVVVEGQPELSH----KDLAFSPGETFEATF 66 (91)
T ss_dssp CSSEESSEEEECTT------CEEEEEECSSCCEEEEETTCGGGCE----EEEECSTTCEEEEEC
T ss_pred ccEEeCCEEEECCC------CEEEEEECCCCCcEEEEeCCCccCc----ccceeCCCCEEEEEe
Confidence 35677887776632 2456778765444444433111111 235788998877654
No 158
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.53 E-value=1.5e+02 Score=20.82 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 028356 188 KDEKNNAVQQNNKLRQDLWT 207 (210)
Q Consensus 188 ~~E~~~~~~~~~~L~~el~~ 207 (210)
.+|.+.-.++...|+.++++
T Consensus 50 ~~el~~h~~ei~~le~~i~r 69 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666553
No 159
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=21.18 E-value=1.9e+02 Score=21.76 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=37.5
Q ss_pred eeEEEEEEeCCCC-----eEEEEEeecCCCc-EEEeCCCeeeCCCCEEEEEEEec
Q 028356 24 ISCSLQLSNKTDN-----YVAFKVKTTNPKK-YCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 24 ~~~~l~L~N~s~~-----~VaFKVKTT~P~~-Y~VrP~~GiI~P~~s~~V~Vtlq 72 (210)
....|+|+|+.+. -++|.++...-.. --+-|..|.|.++++..|.|-+.
T Consensus 41 ~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 41 YLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp EEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred EEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 5578999999774 4689998765443 35778889999999988877654
No 160
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.17 E-value=1.3e+02 Score=22.48 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028356 184 ISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~ 202 (210)
+.+|.+|+..|.++.+..-
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 161
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.14 E-value=1.3e+02 Score=20.74 Aligned_cols=36 Identities=6% Similarity=0.148 Sum_probs=27.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTG 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+..+...+...|..|++....+..+..+|+..|-..
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555667788888888888888888888877543
No 162
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.97 E-value=1.1e+02 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 176 KSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+..++...|.+|+.|-..|+++|..-++
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555555555555555555444
No 163
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.92 E-value=1.4e+02 Score=18.76 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=18.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028356 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
++..+..+...|..|++--+...|++..|+.
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4445556666666666655556666665554
No 164
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.77 E-value=1.2e+02 Score=21.27 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028356 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
....++...+..|.++...+..+...|++++.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777654
No 165
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=20.77 E-value=88 Score=21.75 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=16.4
Q ss_pred eEEEEEEeCCCCeEEEEEeecCC
Q 028356 25 SCSLQLSNKTDNYVAFKVKTTNP 47 (210)
Q Consensus 25 ~~~l~L~N~s~~~VaFKVKTT~P 47 (210)
.-.|++...+.+.|.|||+.+.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 34677777777788888887665
No 166
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.67 E-value=86 Score=25.99 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 028356 177 STEARALISKLKD---EKNNAVQQNNKLRQDLW 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~---E~~~~~~~~~~L~~el~ 206 (210)
..++.+.+..|+. +...+.+||++||+.|.
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444443 44566778999988764
No 167
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=20.45 E-value=2e+02 Score=20.77 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=26.7
Q ss_pred CCCeeeEEEEEEeCCCCe--EEEEEeecCCCcEEEeCC
Q 028356 20 LKKQISCSLQLSNKTDNY--VAFKVKTTNPKKYCVRPN 55 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~--VaFKVKTT~P~~Y~VrP~ 55 (210)
.+........|+|.+..+ +.||+-==...-+.|.|.
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~ 73 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDE 73 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCT
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC
Confidence 345677899999998876 788876666666777654
No 168
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=20.28 E-value=92 Score=21.54 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=17.6
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCC
Q 028356 24 ISCSLQLSNKTDNYVAFKVKTTNP 47 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P 47 (210)
..-.|++...+...|.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 345677777777788888887766
No 169
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.25 E-value=1.3e+02 Score=22.73 Aligned_cols=9 Identities=11% Similarity=-0.049 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 028356 178 TEARALISK 186 (210)
Q Consensus 178 ~e~~~~i~~ 186 (210)
.++.+.+..
T Consensus 78 ~~L~~~l~~ 86 (138)
T 3hnw_A 78 DSLSLDIEN 86 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
Done!