Query 028357
Match_columns 210
No_of_seqs 162 out of 288
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 98.9 4.7E-09 1.6E-13 84.8 7.2 60 149-209 13-73 (154)
2 2p6y_A Hypothetical protein VC 98.8 3.7E-09 1.3E-13 84.2 6.1 55 154-209 2-57 (142)
3 2dt4_A Hypothetical protein PH 98.5 3E-08 1E-12 78.7 3.1 49 155-203 10-58 (143)
4 2h6l_A Hypothetical protein; N 98.5 5.1E-08 1.7E-12 77.6 3.3 49 155-203 10-58 (146)
5 3htn_A Putative DNA binding pr 98.1 1.4E-06 4.8E-11 69.9 3.8 48 155-202 16-63 (149)
6 2ezd_A High mobility group pro 96.7 0.00071 2.4E-08 40.9 2.1 17 121-137 2-18 (26)
7 3hwu_A Putative DNA-binding pr 96.1 0.0049 1.7E-07 49.0 4.2 45 156-200 14-58 (147)
8 4dyq_A Gene 1 protein; GP1, oc 71.4 1.2 4.1E-05 34.4 1.0 14 88-101 3-16 (140)
9 1t3g_A X-linked interleukin-1 70.3 2.1 7.1E-05 33.8 2.1 28 161-188 51-78 (159)
10 2j67_A TOLL like receptor 10; 55.7 4.1 0.00014 32.9 1.3 28 161-188 74-101 (178)
11 1fyx_A TOLL-like receptor 2; b 53.4 4.3 0.00015 31.4 1.1 28 161-188 44-71 (149)
12 4esy_A CBS domain containing m 43.0 13 0.00046 27.8 2.4 41 151-191 21-61 (170)
13 4gqw_A CBS domain-containing p 42.0 21 0.00072 25.3 3.2 42 152-193 89-130 (152)
14 3j0a_A TOLL-like receptor 5; m 38.7 18 0.00062 34.4 3.1 28 161-188 712-739 (844)
15 4i95_A Putative uncharacterize 36.1 27 0.00093 28.4 3.3 26 180-207 36-61 (142)
16 3sl7_A CBS domain-containing p 36.1 28 0.00097 25.5 3.2 42 152-193 102-143 (180)
17 3k2v_A Putative D-arabinose 5- 31.2 30 0.001 25.0 2.6 43 149-191 29-73 (149)
18 1o50_A CBS domain-containing p 30.9 44 0.0015 24.4 3.5 40 152-192 100-139 (157)
19 2rih_A Conserved protein with 30.7 34 0.0012 24.3 2.8 40 150-189 7-46 (141)
20 3kpb_A Uncharacterized protein 27.3 42 0.0014 22.9 2.7 39 154-192 7-45 (122)
21 2yzi_A Hypothetical protein PH 26.7 61 0.0021 22.7 3.5 41 150-190 9-49 (138)
22 3h16_A TIR protein; bacteria T 26.6 27 0.00092 26.7 1.7 31 160-190 56-86 (154)
23 3nqr_A Magnesium and cobalt ef 26.5 60 0.0021 22.7 3.5 38 154-192 75-112 (127)
24 3lfr_A Putative metal ION tran 26.0 71 0.0024 22.7 3.8 40 152-192 74-113 (136)
25 3fio_A A cystathionine beta-sy 25.6 1.2E+02 0.0042 18.7 4.6 37 158-195 2-39 (70)
26 3ghd_A A cystathionine beta-sy 25.1 1.2E+02 0.004 20.2 4.6 38 158-195 2-39 (70)
27 4esy_A CBS domain containing m 24.9 40 0.0014 25.1 2.4 40 151-191 108-147 (170)
28 1pbj_A Hypothetical protein; s 23.8 63 0.0021 22.1 3.1 38 153-191 6-43 (125)
29 3jtf_A Magnesium and cobalt ef 23.7 68 0.0023 22.5 3.3 37 154-191 75-111 (129)
30 3i8n_A Uncharacterized protein 23.6 72 0.0025 22.4 3.4 38 154-192 78-115 (130)
31 2js7_A Myeloid differentiation 23.2 5.6 0.00019 31.3 -2.9 28 161-188 54-82 (160)
32 3k2v_A Putative D-arabinose 5- 21.9 68 0.0023 23.1 3.0 37 152-188 99-135 (149)
33 2ef7_A Hypothetical protein ST 21.1 79 0.0027 22.0 3.2 41 152-192 71-111 (133)
34 2o16_A Acetoin utilization pro 21.1 1.3E+02 0.0045 21.9 4.5 38 153-191 83-120 (160)
35 2rih_A Conserved protein with 20.6 1.2E+02 0.0043 21.3 4.2 40 152-192 75-114 (141)
36 3ub2_A TOLL/interleukin-1 rece 20.6 4 0.00014 31.8 -4.2 29 160-188 47-75 (146)
37 3oi8_A Uncharacterized protein 20.3 1.2E+02 0.0039 22.2 4.1 37 154-191 109-145 (156)
38 3kpb_A Uncharacterized protein 20.1 70 0.0024 21.8 2.7 42 152-193 66-107 (122)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=98.85 E-value=4.7e-09 Score=84.78 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=52.6
Q ss_pred CCCCCceeEEEEeCCCchHHHHHHhhhh-cCCceEEEecCCCceeeEEecCCCCCCCceEEe
Q 028357 149 SAGMGFTPHVITVAVGEDIAMKLLSFSQ-QGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209 (210)
Q Consensus 149 s~g~~ftPHVItV~~GEDV~~kI~sFaq-qg~raICILSA~GaVSnVTLRQP~ssGgtvTYE 209 (210)
+....+++|+|++.+||||.++|..||+ ++-++.|||++.|++++|+||+++... +++||
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~ 73 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLT 73 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEE
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecC
Confidence 4567899999999999999999999996 566799999999999999999998865 55553
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=98.84 E-value=3.7e-09 Score=84.24 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=48.9
Q ss_pred ceeEEEEeCCCchHHHHHHhhhhc-CCceEEEecCCCceeeEEecCCCCCCCceEEe
Q 028357 154 FTPHVITVAVGEDIAMKLLSFSQQ-GPRAICVLSANGAISTATLRQPSSSGGSVTYE 209 (210)
Q Consensus 154 ftPHVItV~~GEDV~~kI~sFaqq-g~raICILSA~GaVSnVTLRQP~ssGgtvTYE 209 (210)
|++|+|++.+||||.++|..||++ +-++.|||++.|++++|+||+|+... +++||
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~ 57 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVS 57 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEEC
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecC
Confidence 789999999999999999999986 55689999999999999999999865 45553
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=98.55 E-value=3e-08 Score=78.70 Aligned_cols=49 Identities=10% Similarity=0.204 Sum_probs=43.6
Q ss_pred eeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCCCCC
Q 028357 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG 203 (210)
Q Consensus 155 tPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~ssG 203 (210)
++|+|++.+||||.++|..||++.....|++++.|++++|+||+++...
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~ 58 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEK 58 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTT
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCcc
Confidence 6999999999999999999999877666667999999999999987654
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=98.50 E-value=5.1e-08 Score=77.60 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=42.7
Q ss_pred eeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCCCCC
Q 028357 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG 203 (210)
Q Consensus 155 tPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~ssG 203 (210)
++|+|++.+||||.++|..||++.....|++++.|++++|+||+++...
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~ 58 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEK 58 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCC
Confidence 5999999999999999999998766544445999999999999987765
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=98.13 E-value=1.4e-06 Score=69.88 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=44.1
Q ss_pred eeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCCCC
Q 028357 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSS 202 (210)
Q Consensus 155 tPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~ss 202 (210)
+.++|.+.+||||.++|..||++.....|++++.|++++|+||+++..
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~ 63 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPK 63 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTT
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCC
Confidence 689999999999999999999998888888899999999999997553
No 6
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.74 E-value=0.00071 Score=40.94 Aligned_cols=17 Identities=59% Similarity=0.954 Sum_probs=14.9
Q ss_pred CcCcCCCCCCCCCCCCc
Q 028357 121 PTQKRGRGRPPGTGRKQ 137 (210)
Q Consensus 121 ~~~KR~RGRP~GS~nK~ 137 (210)
+..||+||||.|||||.
T Consensus 2 ptpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKG 18 (26)
T ss_dssp CSCCCCSSCCTTCCCCS
T ss_pred CCCcCCCCCcCcccccC
Confidence 34799999999999995
No 7
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=96.09 E-value=0.0049 Score=48.99 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=40.6
Q ss_pred eEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCC
Q 028357 156 PHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS 200 (210)
Q Consensus 156 PHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~ 200 (210)
-.++.+.+||||.+.|..||++..-.-+++++-|++++++|+-.+
T Consensus 14 ~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~ 58 (147)
T 3hwu_A 14 GYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYD 58 (147)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeec
Confidence 378999999999999999999998877888999999999999543
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=71.39 E-value=1.2 Score=34.45 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=6.3
Q ss_pred cccCCCCCCCCCCC
Q 028357 88 VKRKRGRPRKYGPD 101 (210)
Q Consensus 88 ~KkKRGRPRKY~pd 101 (210)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 38999999999886
No 9
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=70.26 E-value=2.1 Score=33.83 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=25.6
Q ss_pred eCCCchHHHHHHhhhhcCCceEEEecCC
Q 028357 161 VAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (210)
Q Consensus 161 V~~GEDV~~kI~sFaqqg~raICILSA~ 188 (210)
..+|++|++.|..--++..+.|+|||.|
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 5689999999999999999999999964
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=55.67 E-value=4.1 Score=32.91 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=25.8
Q ss_pred eCCCchHHHHHHhhhhcCCceEEEecCC
Q 028357 161 VAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (210)
Q Consensus 161 V~~GEDV~~kI~sFaqqg~raICILSA~ 188 (210)
+.+|++|.+.|..--++..+.|+|||.|
T Consensus 74 ~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 74 FDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp CCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred CCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 6789999999999999999999999975
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=53.43 E-value=4.3 Score=31.44 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.8
Q ss_pred eCCCchHHHHHHhhhhcCCceEEEecCC
Q 028357 161 VAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (210)
Q Consensus 161 V~~GEDV~~kI~sFaqqg~raICILSA~ 188 (210)
+.+|+++.+.|..--++..+.|+|||.+
T Consensus 44 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 44 FIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp CCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred CCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 6789999999999999999999999965
No 12
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=43.01 E-value=13 Score=27.79 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=36.0
Q ss_pred CCCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCce
Q 028357 151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (210)
Q Consensus 151 g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaV 191 (210)
..-|++.+++|.+.+.|.+.+-.+.+++-.++.|+..+|.+
T Consensus 21 ~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~l 61 (170)
T 4esy_A 21 RDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHL 61 (170)
T ss_dssp GGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCE
T ss_pred HHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccE
Confidence 34577889999999999999999999999999999988754
No 13
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=42.02 E-value=21 Score=25.30 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.9
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceee
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIST 193 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSn 193 (210)
.-+++.+++|...+++.+.+-.|.+++-+.++|+..+|.+--
T Consensus 89 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~G 130 (152)
T 4gqw_A 89 DLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVG 130 (152)
T ss_dssp HHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEE
T ss_pred HhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEE
Confidence 345667788999999999888899999999999998876543
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=38.71 E-value=18 Score=34.37 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=26.0
Q ss_pred eCCCchHHHHHHhhhhcCCceEEEecCC
Q 028357 161 VAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (210)
Q Consensus 161 V~~GEDV~~kI~sFaqqg~raICILSA~ 188 (210)
..+|++|++.|..--++..|.|||||.+
T Consensus 712 ~~~G~~~~~~i~~~i~~sr~~i~vls~~ 739 (844)
T 3j0a_A 712 FVPGENRIANIQDAIWNSRKIVCLVSRH 739 (844)
T ss_dssp CCSSSCHHHHHHHHHHHSSEEEEEECTT
T ss_pred cCCCchHHHHHHHHHHHhCeEEEEeccc
Confidence 5689999999999999999999999976
No 15
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=36.06 E-value=27 Score=28.36 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=20.5
Q ss_pred ceEEEecCCCceeeEEecCCCCCCCceE
Q 028357 180 RAICVLSANGAISTATLRQPSSSGGSVT 207 (210)
Q Consensus 180 raICILSA~GaVSnVTLRQP~ssGgtvT 207 (210)
...=|||..|++.|+++++ .++.++|
T Consensus 36 n~lKIlSdDgtF~Ni~m~~--~~~aiIt 61 (142)
T 4i95_A 36 NTFKVLSDDGRIVNFTIRP--GTDAIIT 61 (142)
T ss_dssp EEEEEECTTSEEEEEECCT--TSCCEEE
T ss_pred ccEEEEcCCCcEEEEEEec--CCCcEEE
Confidence 3677999999999999993 3565554
No 16
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=36.05 E-value=28 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=35.4
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceee
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIST 193 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSn 193 (210)
.-+++.+++|...+++.+.+-.|.+.+-+.++|+..+|.+--
T Consensus 102 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vG 143 (180)
T 3sl7_A 102 DLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIG 143 (180)
T ss_dssp HHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEE
T ss_pred HHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEE
Confidence 446677899999999999888899999999999998876543
No 17
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=31.20 E-value=30 Score=25.01 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=36.8
Q ss_pred CCCCCcee--EEEEeCCCchHHHHHHhhhhcCCceEEEecCCCce
Q 028357 149 SAGMGFTP--HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (210)
Q Consensus 149 s~g~~ftP--HVItV~~GEDV~~kI~sFaqqg~raICILSA~GaV 191 (210)
.+..-|++ .+++|.+.+.+.+.+-.|.+++...+.|+..+|.+
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~ 73 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNI 73 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBE
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcE
Confidence 45567888 89999999999999999999999999999987653
No 18
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=30.92 E-value=44 Score=24.38 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=33.8
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCcee
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIS 192 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVS 192 (210)
.-+++ +++|.+.+++.+.+-.|.+++-+.+.|+..+|.+-
T Consensus 100 ~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~v 139 (157)
T 1o50_A 100 EIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIV 139 (157)
T ss_dssp HHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred HHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEE
Confidence 34667 89999999999999999999999999998777543
No 19
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=30.67 E-value=34 Score=24.32 Aligned_cols=40 Identities=3% Similarity=-0.021 Sum_probs=34.0
Q ss_pred CCCCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCC
Q 028357 150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANG 189 (210)
Q Consensus 150 ~g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~G 189 (210)
++.-|++.+++|.+.+.+.+.+-.|.+++...+.|+..+|
T Consensus 7 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~ 46 (141)
T 2rih_A 7 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN 46 (141)
T ss_dssp GGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE
T ss_pred HHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC
Confidence 4455677899999999999988889888888999998876
No 20
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=27.29 E-value=42 Score=22.95 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=32.5
Q ss_pred ceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCcee
Q 028357 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIS 192 (210)
Q Consensus 154 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVS 192 (210)
|++.+++|.+.+.+.+.+-.|.+++...+.|+..+|.+-
T Consensus 7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~ 45 (122)
T 3kpb_A 7 LSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLV 45 (122)
T ss_dssp CCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEE
T ss_pred hCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEE
Confidence 456788899999999888889988889999998777543
No 21
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=26.68 E-value=61 Score=22.71 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=34.1
Q ss_pred CCCCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCc
Q 028357 150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGA 190 (210)
Q Consensus 150 ~g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~Ga 190 (210)
++.-|++.+++|.+.+.+.+.+-.|.+++...+.|+..+|.
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~ 49 (138)
T 2yzi_A 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGN 49 (138)
T ss_dssp GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 44557788999999999999888898888889999986654
No 22
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=26.62 E-value=27 Score=26.73 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=26.3
Q ss_pred EeCCCchHHHHHHhhhhcCCceEEEecCCCc
Q 028357 160 TVAVGEDIAMKLLSFSQQGPRAICVLSANGA 190 (210)
Q Consensus 160 tV~~GEDV~~kI~sFaqqg~raICILSA~Ga 190 (210)
.+..|+++...|..--++....|+|||.+=.
T Consensus 56 ~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~ 86 (154)
T 3h16_A 56 SLRPGDSLRRSIDKGLGSSRFGIVVLSTHFF 86 (154)
T ss_dssp EECTTCCHHHHHHHHHTSEEEEEEEEEHHHH
T ss_pred hCCCccHHHHHHHHHHHhCcEEEEEeCcchh
Confidence 4689999999999988888889999996633
No 23
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=26.46 E-value=60 Score=22.69 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCcee
Q 028357 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIS 192 (210)
Q Consensus 154 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVS 192 (210)
+++ +++|.+.+++.+.+-.|.+++-+.+.|+..+|.+-
T Consensus 75 m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~ 112 (127)
T 3nqr_A 75 LRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVS 112 (127)
T ss_dssp CBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEE
T ss_pred cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence 345 57899999999999999999999999998877543
No 24
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=26.04 E-value=71 Score=22.73 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCcee
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIS 192 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVS 192 (210)
.-+++ +++|.+.+++.+.+-.|.+++-+.+.|+..+|.+-
T Consensus 74 ~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lv 113 (136)
T 3lfr_A 74 KLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVA 113 (136)
T ss_dssp GTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEE
T ss_pred HHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence 44577 89999999999999999999999999998876543
No 25
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=25.61 E-value=1.2e+02 Score=18.68 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=29.2
Q ss_pred EEEeCCCchHHHHHHhhhhcCCceEEEecCCCc-eeeEE
Q 028357 158 VITVAVGEDIAMKLLSFSQQGPRAICVLSANGA-ISTAT 195 (210)
Q Consensus 158 VItV~~GEDV~~kI~sFaqqg~raICILSA~Ga-VSnVT 195 (210)
+++|.+.+.+.+.+-.|.+++-..+-|+.. |. +-=||
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt 39 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVT 39 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEE
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEE
Confidence 578999999999888888888889999887 43 33344
No 26
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=25.09 E-value=1.2e+02 Score=20.22 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=30.8
Q ss_pred EEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEE
Q 028357 158 VITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTAT 195 (210)
Q Consensus 158 VItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVT 195 (210)
+|+|.+.+-|.+.+-.+.+++-.++.|+-.+-.|-=+|
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT 39 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVT 39 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEE
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEE
Confidence 68999999999999999999999999987543344444
No 27
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=24.93 E-value=40 Score=25.08 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=34.2
Q ss_pred CCCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCce
Q 028357 151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (210)
Q Consensus 151 g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaV 191 (210)
..-|++.+++|.+.+++.+.+-.|.+++-+.+.|+- +|.+
T Consensus 108 ~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~l 147 (170)
T 4esy_A 108 SAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVP 147 (170)
T ss_dssp HHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEE
T ss_pred hhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEE
Confidence 345778899999999999999999999999999996 5544
No 28
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=23.77 E-value=63 Score=22.06 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=31.0
Q ss_pred CceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCce
Q 028357 153 GFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (210)
Q Consensus 153 ~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaV 191 (210)
.|++.+++|.+.+.+.+.+-.|.+++...+.|+. +|.+
T Consensus 6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~ 43 (125)
T 1pbj_A 6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVR 43 (125)
T ss_dssp HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEE
T ss_pred hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCee
Confidence 3566788999999999888888888888999998 6643
No 29
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=23.68 E-value=68 Score=22.54 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCce
Q 028357 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (210)
Q Consensus 154 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaV 191 (210)
+++ +++|.+.+++.+.+-.|.+++-+.+.|+..+|.+
T Consensus 75 m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~ 111 (129)
T 3jtf_A 75 VRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGI 111 (129)
T ss_dssp CBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCE
T ss_pred hCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCE
Confidence 455 7899999999998888999888899999887654
No 30
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=23.65 E-value=72 Score=22.36 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCcee
Q 028357 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIS 192 (210)
Q Consensus 154 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVS 192 (210)
+++ +++|.+.+++.+.+-.|.+++-+.+.|+..+|.+-
T Consensus 78 m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~v 115 (130)
T 3i8n_A 78 MRP-IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVL 115 (130)
T ss_dssp SEE-CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEE
T ss_pred hcC-CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEE
Confidence 345 78999999999999999999989999998877543
No 31
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=23.22 E-value=5.6 Score=31.34 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.2
Q ss_pred eCCCchHHHHHHhhhh-cCCceEEEecCC
Q 028357 161 VAVGEDIAMKLLSFSQ-QGPRAICVLSAN 188 (210)
Q Consensus 161 V~~GEDV~~kI~sFaq-qg~raICILSA~ 188 (210)
+.+|+++.+.|..--+ +..+.|+|||.+
T Consensus 54 ~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~ 82 (160)
T 2js7_A 54 VLPGTCVWSIASELIEKRCRRMVVVVSDD 82 (160)
T ss_dssp SSSSCSCCCCCGGGHHHHEEEEEEECCHH
T ss_pred CCCCCcHHHHHHHHHHHhCCEEEEEECcc
Confidence 5679999888888887 688899999864
No 32
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=21.91 E-value=68 Score=23.09 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=31.5
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCC
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~ 188 (210)
.-+++.+++|...+++.+.+-.|.+++-+.+.|+..+
T Consensus 99 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 135 (149)
T 3k2v_A 99 DVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD 135 (149)
T ss_dssp HHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT
T ss_pred HHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 3456778999999999999999999998999998765
No 33
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=21.14 E-value=79 Score=21.95 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=33.9
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCcee
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIS 192 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVS 192 (210)
.-+++.+++|...+++.+.+-.|.+++.+.+.|+..+|.+-
T Consensus 71 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~ 111 (133)
T 2ef7_A 71 EFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLK 111 (133)
T ss_dssp GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred HHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Confidence 34567788999999999888889999989999998877554
No 34
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=21.06 E-value=1.3e+02 Score=21.93 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=32.1
Q ss_pred CceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCce
Q 028357 153 GFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (210)
Q Consensus 153 ~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaV 191 (210)
.+++-+++|.+.+++.+.+-.|.+.+-+.++|+.. |.+
T Consensus 83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~l 120 (160)
T 2o16_A 83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVL 120 (160)
T ss_dssp HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEE
T ss_pred HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEE
Confidence 35567899999999999999999999889999987 644
No 35
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=20.64 E-value=1.2e+02 Score=21.25 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=32.9
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCcee
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIS 192 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVS 192 (210)
.-+++.+++|... ++.+.+-.|.+.+-+.++|+..+|.+-
T Consensus 75 ~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~ 114 (141)
T 2rih_A 75 PIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELV 114 (141)
T ss_dssp GGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred HHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEE
Confidence 3455678999999 999998889999989999999777543
No 36
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=20.55 E-value=4 Score=31.81 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=19.6
Q ss_pred EeCCCchHHHHHHhhhhcCCceEEEecCC
Q 028357 160 TVAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (210)
Q Consensus 160 tV~~GEDV~~kI~sFaqqg~raICILSA~ 188 (210)
.+.+|++|.+.|..--++..+.|+|||.|
T Consensus 47 D~~~G~~i~~~i~~aI~~Sr~~I~VlS~~ 75 (146)
T 3ub2_A 47 DATPGGAIVSELCQALSSSHCRVLLITPG 75 (146)
T ss_dssp ------CCCEEECCTTCCEEEEEEEECHH
T ss_pred cccccccHHHHHHHHHHhCCEEEEEECcc
Confidence 46788998888888888888899999865
No 37
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=20.25 E-value=1.2e+02 Score=22.22 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCce
Q 028357 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (210)
Q Consensus 154 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaV 191 (210)
+++ +++|....++.+.+-.|.+++-+.+.|+..+|.+
T Consensus 109 m~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~ 145 (156)
T 3oi8_A 109 LRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGT 145 (156)
T ss_dssp CBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSE
T ss_pred cCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCE
Confidence 456 7899999999999999999998999999887754
No 38
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=20.08 E-value=70 Score=21.80 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=33.9
Q ss_pred CCceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceee
Q 028357 152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIST 193 (210)
Q Consensus 152 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSn 193 (210)
.-+++.+++|...+++.+.+-.|.+++-+.+.|+..+|.+.-
T Consensus 66 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~G 107 (122)
T 3kpb_A 66 EIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVG 107 (122)
T ss_dssp GTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred HHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEE
Confidence 345567788999999999888899999899999998776543
Done!