Query 028358
Match_columns 210
No_of_seqs 116 out of 177
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04520 Senescence_reg: Senes 100.0 2E-46 4.4E-51 308.5 8.7 101 103-210 47-152 (152)
2 PF09350 DUF1992: Domain of un 37.5 27 0.00059 25.7 2.1 33 177-209 12-51 (71)
3 PF11898 DUF3418: Domain of un 29.5 25 0.00054 35.2 1.0 37 154-201 248-285 (586)
4 PRK10203 hypothetical protein; 25.7 49 0.0011 27.1 1.9 43 167-209 8-56 (122)
5 PF13711 DUF4160: Domain of un 20.1 59 0.0013 23.0 1.2 41 160-204 14-56 (66)
6 PF04492 Phage_rep_O: Bacterio 14.3 85 0.0018 24.5 0.9 18 190-208 30-48 (100)
7 PF13961 DUF4219: Domain of un 10.9 54 0.0012 19.9 -0.9 11 34-44 17-27 (27)
8 PF10984 DUF2794: Protein of u 10.9 1.1E+02 0.0025 23.8 0.7 21 178-198 63-84 (85)
9 PF09924 DUF2156: Uncharacteri 10.1 1.3E+02 0.0029 26.3 0.9 15 189-203 110-124 (299)
10 KOG1350 F0F1-type ATP synthase 9.3 1.4E+02 0.003 29.4 0.7 20 178-197 220-240 (521)
No 1
>PF04520 Senescence_reg: Senescence regulator; InterPro: IPR007608 This family contains several uncharacterised proteins.
Probab=100.00 E-value=2e-46 Score=308.49 Aligned_cols=101 Identities=50% Similarity=0.769 Sum_probs=78.5
Q ss_pred CccceeeccccCccCCCCCCCCCcCCCCCCCCCCCcccccccCCCC-----CCCCCcccccCCCCCeeehhhhhhccccc
Q 028358 103 SASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYRVDSVDS-----MHDSDDERDMEMIPPHEYLAREYARSKKT 177 (210)
Q Consensus 103 ~s~r~v~~~~~~~~~~~~~~~~~~~~SaPVnIP~wsk~~r~~~~~~-----~~d~dd~~~~~~vPPHe~vaRr~ars~~~ 177 (210)
+++|+|++.. ..........++++|+|||||+|++|++...... .++++++++.+|||||||||| +.+
T Consensus 47 s~~R~~~~~~--~~~~~~~~~~~~~~SaPV~IP~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~vPPHe~~ar-----~~~ 119 (152)
T PF04520_consen 47 SSPRMIPRSP--SSGRSSSRSRKAASSAPVNIPDWSKILGSRRRRREEDDDDDDDEDDDGGEMVPPHELVAR-----RRA 119 (152)
T ss_pred CCCcccCCCC--CCcCCCCCCCccCCCCcccCcCccccccccccccccccccccccccCCccccCcHHHHhh-----hcc
Confidence 5667777654 1234455667889999999999999986433221 122234567889999999999 246
Q ss_pred cccccccCCCCccccchhhhhhhhhhhccccCC
Q 028358 178 GGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG 210 (210)
Q Consensus 178 aafSV~eG~GRTLKGRDL~rVRNAVlr~TGFle 210 (210)
++||||||+|||||||||+|||||||+||||||
T Consensus 120 ~s~Sv~eG~GRTLKGRDL~rVRNAVl~~TGFle 152 (152)
T PF04520_consen 120 ASFSVCEGVGRTLKGRDLRRVRNAVLRQTGFLE 152 (152)
T ss_pred cCcccccCCCccchhhHHHHHHHHHHhhhccCC
Confidence 679999999999999999999999999999997
No 2
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=37.46 E-value=27 Score=25.66 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=25.4
Q ss_pred ccccccccCCCCccccchh-------hhhhhhhhhccccC
Q 028358 177 TGGASVFEGVGRTLKGRDL-------RRVRDAVWSQTGFD 209 (210)
Q Consensus 177 ~aafSV~eG~GRTLKGRDL-------~rVRNAVlr~TGFl 209 (210)
...|-=+.|.|++|+=-|. .++.|-||+.+||+
T Consensus 12 ~GeFdnLpG~GKPL~~~~~~~~~~~~~~~~~~iLk~~g~l 51 (71)
T PF09350_consen 12 RGEFDNLPGAGKPLPLDDDNPYWPAEERMANRILKNAGYL 51 (71)
T ss_pred cCCccCCCCCCCCCCCCCCCcCCCHHHHHHHHhhcccCCC
Confidence 3558888999999984443 57888899888886
No 3
>PF11898 DUF3418: Domain of unknown function (DUF3418); InterPro: IPR024590 This entry represents the uncharacterised C-terminal domain of HrpA.
Probab=29.47 E-value=25 Score=35.19 Aligned_cols=37 Identities=35% Similarity=0.634 Sum_probs=30.4
Q ss_pred cccccCCCCCeeehhhhhhccccccccccccCCCCccc-cchhhhhhhh
Q 028358 154 DERDMEMIPPHEYLAREYARSKKTGGASVFEGVGRTLK-GRDLRRVRDA 201 (210)
Q Consensus 154 d~~~~~~vPPHe~vaRr~ars~~~aafSV~eG~GRTLK-GRDL~rVRNA 201 (210)
++++.+-||||--+ . |.|+...|++|. ||||..++.-
T Consensus 248 ~d~~~~~Lp~HLrm----------~-f~VvD~~Gk~la~gRdL~~L~~~ 285 (586)
T PF11898_consen 248 DDWDEERLPPHLRM----------N-FRVVDDKGKELASGRDLAALQQR 285 (586)
T ss_pred HhCCcccCCHhHEe----------E-EEEEcCCCCeecCCCCHHHHHHH
Confidence 56677889999765 2 999999999998 9999887653
No 4
>PRK10203 hypothetical protein; Provisional
Probab=25.72 E-value=49 Score=27.08 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=29.2
Q ss_pred hhhhhhccccccccccccCCCCccccchhh------hhhhhhhhccccC
Q 028358 167 LAREYARSKKTGGASVFEGVGRTLKGRDLR------RVRDAVWSQTGFD 209 (210)
Q Consensus 167 vaRr~ars~~~aafSV~eG~GRTLKGRDL~------rVRNAVlr~TGFl 209 (210)
+-++++.......|.=+.|.|++|..-|.. ++-+-|++..||+
T Consensus 8 ~E~~I~eA~~~GefdnLpG~GKPL~~~d~~~~p~e~r~~~rilknag~l 56 (122)
T PRK10203 8 AERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCL 56 (122)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCccCCCCCHHHHHHHHHHhhCCCC
Confidence 334444333446699999999999988776 3445577777776
No 5
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=20.13 E-value=59 Score=22.97 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=27.2
Q ss_pred CCCCeeehhhhhhccccccccccccCC--CCccccchhhhhhhhhhh
Q 028358 160 MIPPHEYLAREYARSKKTGGASVFEGV--GRTLKGRDLRRVRDAVWS 204 (210)
Q Consensus 160 ~vPPHe~vaRr~ars~~~aafSV~eG~--GRTLKGRDL~rVRNAVlr 204 (210)
--|||.-|...- ..|.|.+..+. .-.|+.+||+++.+-|-.
T Consensus 14 H~PpHvHv~~g~----~~a~i~l~~l~~~~G~l~~k~l~~i~~~i~~ 56 (66)
T PF13711_consen 14 HEPPHVHVRYGG----FEAKIWLEPLEVNEGFLPRKELRKILEWIEE 56 (66)
T ss_pred CCCCeEEEEcCC----cEEEEEecchHHhcCCCCHHHHHHHHHHHHH
Confidence 469999995521 34557766533 125788999999887643
No 6
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=14.28 E-value=85 Score=24.54 Aligned_cols=18 Identities=39% Similarity=0.697 Sum_probs=15.1
Q ss_pred cccchhhhhhhhhhhcc-cc
Q 028358 190 LKGRDLRRVRDAVWSQT-GF 208 (210)
Q Consensus 190 LKGRDL~rVRNAVlr~T-GF 208 (210)
|.||.+ +|=.||+|+| ||
T Consensus 30 ls~rq~-ki~~ai~RkTyG~ 48 (100)
T PF04492_consen 30 LSGRQL-KILLAIIRKTYGW 48 (100)
T ss_pred ccHHHH-HHHHHHHHHccCC
Confidence 567777 7999999998 76
No 7
>PF13961 DUF4219: Domain of unknown function (DUF4219)
Probab=10.91 E-value=54 Score=19.89 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=7.6
Q ss_pred CCccccccccC
Q 028358 34 LGEEDVWSTVD 44 (210)
Q Consensus 34 l~EEDVW~v~~ 44 (210)
|...|+|.+++
T Consensus 17 L~~~~lW~vVe 27 (27)
T PF13961_consen 17 LESQDLWDVVE 27 (27)
T ss_pred HHHcchhhhhC
Confidence 45677888863
No 8
>PF10984 DUF2794: Protein of unknown function (DUF2794); InterPro: IPR021252 This is a bacterial family of proteins with unknown function.
Probab=10.86 E-value=1.1e+02 Score=23.78 Aligned_cols=21 Identities=43% Similarity=0.658 Sum_probs=18.2
Q ss_pred cccccccCCCCccc-cchhhhh
Q 028358 178 GGASVFEGVGRTLK-GRDLRRV 198 (210)
Q Consensus 178 aafSV~eG~GRTLK-GRDL~rV 198 (210)
..|+|..-.|.-|| |.||.+|
T Consensus 63 g~y~v~~~~G~iLkrG~~L~~v 84 (85)
T PF10984_consen 63 GAYAVIGEGGQILKRGHDLEQV 84 (85)
T ss_pred CceeeecCCCeEeeCCcchhhc
Confidence 45999988899999 9999876
No 9
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=10.07 E-value=1.3e+02 Score=26.28 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=11.6
Q ss_pred ccccchhhhhhhhhh
Q 028358 189 TLKGRDLRRVRDAVW 203 (210)
Q Consensus 189 TLKGRDL~rVRNAVl 203 (210)
||+|+-++++||+|=
T Consensus 110 ~l~Gkk~~~~Rn~in 124 (299)
T PF09924_consen 110 TLSGKKFRKKRNHIN 124 (299)
T ss_dssp H--SGGGHHHHHHHH
T ss_pred ccCCchhhhHHHHHH
Confidence 689999999999984
No 10
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=9.29 E-value=1.4e+02 Score=29.42 Aligned_cols=20 Identities=65% Similarity=1.012 Sum_probs=17.3
Q ss_pred cccccccCCC-Cccccchhhh
Q 028358 178 GGASVFEGVG-RTLKGRDLRR 197 (210)
Q Consensus 178 aafSV~eG~G-RTLKGRDL~r 197 (210)
..|||+.|+| ||-.|-||-+
T Consensus 220 GGySVF~GvGERTREGNDLY~ 240 (521)
T KOG1350|consen 220 GGYSVFAGVGERTREGNDLYH 240 (521)
T ss_pred CCeEEeeccccccccccHHHH
Confidence 4699999999 8999999854
Done!